RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031818
         (152 letters)



>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 271

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 24/68 (35%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
           Q DE ++G++Y+E+  Y   +++                      ++V+E ++   K YS
Sbjct: 218 QSDETELGISYDEIDDYLEGKEV---------------------SAKVSEALE---KRYS 253

Query: 63  INRHKMTV 70
           +  HK  V
Sbjct: 254 MTEHKRQV 261


>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
           {Escherichia coli [TaxId: 562]}
          Length = 274

 Score = 32.2 bits (72), Expect = 0.016
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 24/66 (36%)

Query: 3   QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYS 62
             DEV +G+TY+ +  Y                        +  P +VA  ++++   Y 
Sbjct: 220 LPDEVALGVTYDNIDDYLE---------------------GKNVPQQVARTIENW---YL 255

Query: 63  INRHKM 68
              HK 
Sbjct: 256 KTEHKR 261


>d1k46a_ d.195.1.1 (A:) YopH tyrosine phosphatase N-terminal
          domain {Yersinia pseudotuberculosis [TaxId: 633]}
          Length = 124

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 20 GRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAES 79
          G+LR        + F+ L    GAR +    A+ V        + +     L  S    +
Sbjct: 24 GKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQS----T 79

Query: 80 YSPEDNRFDLRQ 91
               N +DLR 
Sbjct: 80 VKHNLNNYDLRS 91


>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 167

 Score = 25.3 bits (55), Expect = 2.5
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 94  YNARWPYQFRKIDELVKELDGEKV 117
           Y   W  QF +  + +K++  E  
Sbjct: 5   YQPAWVEQFEEEAQALKQILKENC 28


>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
           {Helicobacter pylori [TaxId: 210]}
          Length = 255

 Score = 25.7 bits (55), Expect = 2.6
 Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 7/68 (10%)

Query: 1   MKQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKY 60
           + Q DE D+G  Y  +    +  +          + L                VK+    
Sbjct: 186 VGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQLGYDE-------ILVKNITSR 238

Query: 61  YSINRHKM 68
              N  K+
Sbjct: 239 IQKNAFKL 246


>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 183

 Score = 24.8 bits (53), Expect = 4.3
 Identities = 7/62 (11%), Positives = 17/62 (27%)

Query: 39  YRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARW 98
           +       P+E+   +  FF +Y+ +      +            D  ++  Q       
Sbjct: 67  FSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFS 126

Query: 99  PY 100
             
Sbjct: 127 YN 128


>gi|3308969|dbj|BAA31557.1|(36-183:257) macrophage-colony
           stimulating factor alpha [Bos taurus] 
           gi|33114043|gb|AAP94638.1| colony-stimulating factor-1
           splice variant [Bos taurus]  E=5e-72 s/c=1.84 id=87%
           cov=101%
          Length = 148

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 15/55 (27%)

Query: 30  PVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPED 84
            V  F           TP ++ EK+K+ F           +L   ++  S +  +
Sbjct: 99  CVRTFHE---------TPLQLLEKIKNVFNET------KNLLKKDWNIFSKNCNN 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 626,896
Number of extensions: 30131
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 11
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)