Query 031819
Match_columns 152
No_of_seqs 166 out of 232
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 08:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 99.8 7.6E-20 2.6E-24 165.3 7.7 80 2-84 525-604 (634)
2 3sdb_A Glutamine-dependent NAD 99.4 2E-13 7E-18 124.8 8.2 81 2-83 555-653 (680)
3 4f4h_A Glutamine dependent NAD 99.1 1.1E-10 3.6E-15 104.8 6.8 70 2-83 480-551 (565)
4 1xng_A NH(3)-dependent NAD(+) 99.0 1.6E-10 5.4E-15 93.4 4.2 72 2-85 189-264 (268)
5 1kqp_A NAD+ synthase, NH(3)-de 98.9 4.4E-10 1.5E-14 92.0 3.6 50 2-76 217-266 (271)
6 1wxi_A NH(3)-dependent NAD(+) 98.9 5.1E-10 1.7E-14 92.3 4.0 50 2-76 220-269 (275)
7 2e18_A NH(3)-dependent NAD(+) 98.9 1.3E-09 4.4E-14 87.2 5.4 69 2-81 186-254 (257)
8 3q4g_A NH(3)-dependent NAD(+) 98.7 1.2E-08 4.1E-13 85.1 4.4 50 2-75 229-278 (279)
9 3dpi_A NAD+ synthetase; ssgcid 98.5 4.1E-08 1.4E-12 82.4 4.0 45 2-70 229-273 (285)
10 3fiu_A NH(3)-dependent NAD(+) 98.5 5.9E-08 2E-12 78.8 3.0 45 2-70 199-243 (249)
11 3n05_A NH(3)-dependent NAD(+) 98.4 2.7E-07 9.3E-12 82.4 6.7 70 2-83 501-570 (590)
12 3p52_A NH(3)-dependent NAD(+) 98.2 3.9E-07 1.3E-11 74.0 1.4 57 2-74 190-246 (249)
13 2vxo_A GMP synthase [glutamine 70.6 2.2 7.4E-05 39.5 2.6 22 2-23 452-473 (697)
14 2v79_A DNA replication protein 60.8 11 0.00039 27.6 4.5 86 8-116 27-117 (135)
15 3zta_A MTR, anti-sigma-factor 47.6 36 0.0012 25.8 5.3 43 5-58 22-70 (146)
16 3rmr_A ATR1, avirulence protei 44.6 47 0.0016 27.3 5.9 86 20-113 166-255 (260)
17 2vn2_A DNAD, chromosome replic 44.1 82 0.0028 22.2 6.7 85 8-113 27-114 (128)
18 2a9i_A IRAK-4, interleukin-1 r 36.9 72 0.0025 22.9 5.4 45 6-54 43-88 (113)
19 3mop_A Myeloid differentiation 36.0 61 0.0021 23.3 4.9 42 8-57 35-78 (110)
20 1wxp_A THO complex subunit 1; 33.1 59 0.002 22.7 4.3 31 8-42 38-68 (110)
21 2jro_A Uncharacterized protein 28.6 20 0.00067 25.2 1.1 57 44-115 6-66 (78)
22 3v62_C ATP-dependent DNA helic 24.0 16 0.00056 25.2 0.0 18 80-97 2-19 (69)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=7.6e-20 Score=165.34 Aligned_cols=80 Identities=31% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 81 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys 81 (152)
.||||.+| |||++||.|+++++..++||.+|+.++...|+ +++++|+++|++||++|++|||||+.+||++|+++||
T Consensus 525 ~q~de~~l-~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~~~--~~~~~i~~~v~~~~~~~~~~~~Kr~~~pp~~~v~~~~ 601 (634)
T 3ilv_A 525 TQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFHMDDFN 601 (634)
T ss_dssp ------CC-CTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHTHHHHTTCCCBCCCSSCC
T ss_pred CCCCcccc-CCHHHHHHHHHHHHHcCCCHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHHHhHhccccCCCceEEeCCC
Confidence 69999999 99999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred CCC
Q 031819 82 PED 84 (152)
Q Consensus 82 pDd 84 (152)
+|.
T Consensus 602 ~~p 604 (634)
T 3ilv_A 602 IDP 604 (634)
T ss_dssp CCT
T ss_pred CCC
Confidence 993
No 2
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=99.43 E-value=2e-13 Score=124.81 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCC----------------CChHHHHHHHHHHHH-Hhhhc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGAR----------------LTPSEVAEKVKHFFK-YYSIN 64 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~----------------~sp~eia~kVkrFF~-~ys~N 64 (152)
.|+||.+|| ||++||.|.+.....+++|..|+..+.+.|.+. +++++|+.|+++||+ ||++|
T Consensus 555 ~q~de~~lg-~Y~~~D~~L~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~f~~rf~~~~ 633 (680)
T 3sdb_A 555 LQSSEAKVG-PFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFS 633 (680)
T ss_dssp ---CHHHHC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCCchhhcC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHhccccccccccccchhhhcCCCHHHHHHHHHHHHHHHhhhc
Confidence 599999998 999999999999999999999999999988753 899999999999999 88889
Q ss_pred ccccccCCCcccc-ccCCCC
Q 031819 65 RHKMTVLTPSYHA-ESYSPE 83 (152)
Q Consensus 65 rHKrt~ltPSfH~-e~YspD 83 (152)
||||..+||++|+ ...|++
T Consensus 634 qfKr~~~p~gpkv~~~~~ls 653 (680)
T 3sdb_A 634 QFKRSALPNGPKVSHGGALS 653 (680)
T ss_dssp HHHHTTCCCCCCCCTTCCCC
T ss_pred cCCcccCCCCCEeCCCCCcC
Confidence 9999999999999 665665
No 3
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=99.09 E-value=1.1e-10 Score=104.77 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccc--c
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAE--S 79 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e--~ 79 (152)
.|+||.+|| ||++||.|.++....+++|.+++.. ++++ +.|++|++++.+|||||..+||..|.. +
T Consensus 480 ~Q~ded~l~-~Y~~lD~~l~~~~~~~~~~~~i~~~-------~~~~----~~v~~~~~~~~~~~~KR~~~p~g~kv~~~a 547 (565)
T 4f4h_A 480 NQTDQDSLP-PYDVLDAIMRMYMEEDRPLAEIVAA-------GYSE----ADVKRVTRLIKINEYKRRQAPVGIRVTHRA 547 (565)
T ss_dssp -------CC-CHHHHHHHHHHHTTSCCCHHHHHHT-------TCCH----HHHHHHHHHHHHTHHHHTTSCCBCCCSSSC
T ss_pred CCCCcccCC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCH----HHHHHHHHHHHHhhhchhcCCCceEECCCC
Confidence 499999997 9999999999999999999888642 3555 457888888999999999999999976 5
Q ss_pred CCCC
Q 031819 80 YSPE 83 (152)
Q Consensus 80 YspD 83 (152)
||+|
T Consensus 548 f~~d 551 (565)
T 4f4h_A 548 FGRD 551 (565)
T ss_dssp SSTT
T ss_pred CCCC
Confidence 8884
No 4
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.02 E-value=1.6e-10 Score=93.43 Aligned_cols=72 Identities=17% Similarity=0.091 Sum_probs=51.8
Q ss_pred CCCcccCcCCCHHHHHHHHHHHh--hhc--cChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcccc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRK--IFH--CGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHA 77 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk--~~k--~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~ 77 (152)
.|+||.+|||||++|+.|.+..| +++ ++|-++..+ +++++. |++|+++|.+|||||+ +||..+.
T Consensus 189 ~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~~~~~i~~~-------~~~~~~----~~~~~~~~~~~~~kr~-~~~~~~~ 256 (268)
T 1xng_A 189 GQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQL-------GYDEIL----VKNITSRIQKNAFKLE-LPAIAKR 256 (268)
T ss_dssp TCCHHHHHSSCHHHHHHHHHHHHHHSSSSCCCHHHHHHT-------TCCHHH----HHHHHHHHHHTGGGGS-CCEECCC
T ss_pred CCcchhhcCCCHHHHHHHHHHHHHHhhccCCCHHHHHHc-------CCCHHH----HHHHHHHHHHhHhccc-CCCCccc
Confidence 49999999999999999999875 332 566666541 234332 8999999999999999 6999999
Q ss_pred ccCCCCCC
Q 031819 78 ESYSPEDN 85 (152)
Q Consensus 78 e~YspDdn 85 (152)
.+..+.-+
T Consensus 257 ~~~~~~~~ 264 (268)
T 1xng_A 257 FNPELEHH 264 (268)
T ss_dssp C-------
T ss_pred cchhhccc
Confidence 88776654
No 5
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=98.92 E-value=4.4e-10 Score=92.01 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=40.7
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYH 76 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH 76 (152)
.|+||.+|||||++||.|.+. ...+++++++|++++ .+|+||| .+||..|
T Consensus 217 ~q~De~~lg~~Y~~ld~~l~~---------------------~~~~~~~~~~v~~~~---~~~~~Kr-~~p~~~~ 266 (271)
T 1kqp_A 217 QQSDETELGISYDEIDDYLEG---------------------KEVSAKVSEALEKRY---SMTEHKR-QVPASMF 266 (271)
T ss_dssp TCBHHHHHSSCHHHHHHHHTT---------------------CCCCHHHHHHHHHHH---HHTGGGG-SSCBCTT
T ss_pred CCCCHHHhCCCHHHHHHHHHh---------------------cCCCHHHHHHHHHHH---HHhHHhc-CCCCCCc
Confidence 599999999999999999871 234667777777765 9999999 6688776
No 6
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=98.92 E-value=5.1e-10 Score=92.26 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=39.2
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYH 76 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH 76 (152)
.|+||.+|||||++||.|.+. ...+++++++|++++ .+|+||| .+||.+|
T Consensus 220 ~q~De~~lg~~Y~~lD~~l~~---------------------~~~~~~~~~~i~~~~---~~~~~Kr-~~p~~~~ 269 (275)
T 1wxi_A 220 SLPDEVALGVTYDNIDDYLEG---------------------KNVPQQVARTIENWY---LKTEHKR-RPPITVF 269 (275)
T ss_dssp ---CHHHHSSCHHHHHHHHTT---------------------CCCCHHHHHHHHHHH---HHTGGGG-SSCCCTT
T ss_pred CCCCHHHhCCCHHHHHHHHHh---------------------cCCCHHHHHHHHHHH---HHhHHhc-CCCCCCc
Confidence 599999999999999999872 234677888887765 9999999 6799876
No 7
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=98.90 E-value=1.3e-09 Score=87.25 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 81 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys 81 (152)
.|+||.+|||||++|+.|.+.....+++|-++... . +++++ .|++|+++|.+|||||+ ++|..+..+.|
T Consensus 186 ~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~i~~~-----~-~~~~~----~~~~~~~~~~~~~~kr~-~~~~~~~~~~~ 254 (257)
T 2e18_A 186 GQTDEDELGISYNLLDEILWRMIDLKIGKEEIAKD-----L-GIPLS----LVERVEELIKKSEHKRR-LPIGPSFEDLI 254 (257)
T ss_dssp TCCHHHHHTSCHHHHHHHHHHHHTSCCCHHHHHHT-----T-TCCHH----HHHHHHHHHHTTGGGSS-CCCCCCCGGGE
T ss_pred CCcCHhhcCCCHHHHHHHHHHHHhcCCCHHHHHHH-----h-CCCHH----HHHHHHHHHHHhHhhcc-CCCCCCCCCCC
Confidence 49999999999999999988655555666665532 0 23332 47999999999999999 68888876543
No 8
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=98.67 E-value=1.2e-08 Score=85.14 Aligned_cols=50 Identities=22% Similarity=0.516 Sum_probs=31.9
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCcc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSY 75 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSf 75 (152)
.||||.+|||||++||.|.. +.--++++.++|.+.+ .+|+|||..+|+-|
T Consensus 229 ~q~DE~~lg~~Y~~lD~~L~---------------------~~~~~~~~~~~i~~~~---~~~~hKr~~~p~~~ 278 (279)
T 3q4g_A 229 QKADEAALNLTYEQIDDFLE---------------------GKAVPAEVSQRLVAIY---HATQHKRQPIPTIY 278 (279)
T ss_dssp --------CCCHHHHHHHHH---------------------TCCCCHHHHHHHHHHH---HHTHHHHSCCCCTT
T ss_pred CCCCHHHcCCCHHHHHHHHh---------------------cCCCCHHHHHHHHHHH---HHhHhccCCCCCCC
Confidence 49999999999999999986 2224567777777776 99999998655433
No 9
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=98.54 E-value=4.1e-08 Score=82.42 Aligned_cols=45 Identities=31% Similarity=0.527 Sum_probs=34.9
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 70 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ 70 (152)
.||||.+|||||++||.|.. +.--++++.++|.+.+ .+|+|||..
T Consensus 229 ~q~DE~~lg~~Y~~lD~~L~---------------------~~~~~~~~~~~i~~~~---~~~~hKR~~ 273 (285)
T 3dpi_A 229 QRPDEHAYGITYEQIDDFLE---------------------GKPMDDAVAETVLRFY---DATRHKRAL 273 (285)
T ss_dssp SCC--CCCCCCHHHHHHHHH---------------------TCSCCHHHHHHHHHHH---HHHHHHHHC
T ss_pred CCCcHHHcCCCHHHHHHHHc---------------------CCCCCHHHHHHHHHHH---HHhhhcccC
Confidence 49999999999999999976 2224567777887777 999999986
No 10
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=98.47 E-value=5.9e-08 Score=78.78 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=36.8
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhccccccc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTV 70 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ 70 (152)
.|+||.+|||||++||.|... +--++++.++|.+.+ .+|+|||..
T Consensus 199 ~q~de~~lg~~y~~ld~~l~~---------------------~~~~~~~~~~i~~~~---~~~~~Kr~~ 243 (249)
T 3fiu_A 199 GQTDEDEMGVTYQEIDDFLDG---------------------KQVSAKALERINFWH---NRSHHKRKL 243 (249)
T ss_dssp TCCHHHHHTSCHHHHHHHHHT---------------------CCCCHHHHHHHHHHH---HTTHHHHSC
T ss_pred CCCCHHHcCCCHHHHHHHHhc---------------------CCCCHHHHHHHHHHH---HHhHhcccC
Confidence 499999999999999999871 123567777777776 999999986
No 11
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=98.43 E-value=2.7e-07 Score=82.37 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=49.7
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCC
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYS 81 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ys 81 (152)
.|+||.+|| ||++||.|.+.....+++|-++... +++++ .|+++.+++.+|+|||..+||..++.+.|
T Consensus 501 ~q~de~~l~-~Y~~~D~~l~~~~~~~~~~~~i~~~-------~~~~~----~v~~~~~~~~~~~~KR~~~p~~~~v~~~~ 568 (590)
T 3n05_A 501 GQVDTDSLP-DYPVLDAILELYVDRDTGADAIVAA-------GYDRE----LVVKTLRMVDTAEYKRRQYPPGTKISAKG 568 (590)
T ss_dssp ----------CHHHHHHHHHHHHTSCCCHHHHHHT-------TCCHH----HHHHHHHHHHHTHHHHHSSCCCCCCSSSS
T ss_pred CCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHHc-------CCCHH----HHHHHHHHHHhchhhhccCCCCceecCCC
Confidence 499999997 9999999999888888999998862 36654 34444555589999999999999999988
Q ss_pred CC
Q 031819 82 PE 83 (152)
Q Consensus 82 pD 83 (152)
..
T Consensus 569 ~~ 570 (590)
T 3n05_A 569 FG 570 (590)
T ss_dssp SC
T ss_pred CC
Confidence 77
No 12
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=98.17 E-value=3.9e-07 Score=74.05 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCcccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCc
Q 031819 2 KQLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPS 74 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPS 74 (152)
.|+||.+|||||++||.|...- .++-++ ... +.+ +++.++|.+.+ .+|+|||. +||.
T Consensus 190 ~q~de~~lg~~y~~ld~~l~~~----~~~~~~----~~~---~~~-~~~~~~i~~~~---~~~~~kr~-~p~~ 246 (249)
T 3p52_A 190 NQSDEADLGFSYTKIDEGLKAL----ETNDEK----LLR---TLD-PSLIAMLKNRM---QKNAFKGK-MPEI 246 (249)
T ss_dssp ---------CCCCHHHHHHHHH----HTTCHH----HHH---HSC-HHHHHHHHHHH---HHTGGGGS-CCEE
T ss_pred CCCCHHHcCCCHHHHHHHHHHc----cChHHH----HHc---CCC-HHHHHHHHHHH---HhhhhccC-CCCC
Confidence 4999999999999999988743 222222 111 123 34455555554 99999998 4664
No 13
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=70.56 E-value=2.2 Score=39.53 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=19.0
Q ss_pred CCCcccCcCCCHHHHHHHHHHH
Q 031819 2 KQLDEVDMGMTYEELSVYGRLR 23 (152)
Q Consensus 2 ~QTDE~DMGMTY~ELd~~grLr 23 (152)
.|+||.++|++|++|+.+.+..
T Consensus 452 ~~~de~~~g~~Y~~ld~iL~~~ 473 (697)
T 2vxo_A 452 ICAEEPYICKDFPETNNILKIV 473 (697)
T ss_dssp CCBSSCCCCTTHHHHHHHHHHH
T ss_pred cccchhhhcCCHHHHHHHHHHH
Confidence 4899999999999999876643
No 14
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=60.83 E-value=11 Score=27.60 Aligned_cols=86 Identities=12% Similarity=0.235 Sum_probs=52.7
Q ss_pred CcCCCHHHHHHHHHHHh-----hhccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCCC
Q 031819 8 DMGMTYEELSVYGRLRK-----IFHCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSP 82 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk-----~~k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~Ysp 82 (152)
++|||-.|+-.+.-|-. ...+.|.. |... -++++.+|...|.+.-.-=-+.+-.+. +.-+-
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~----LA~~--~~~s~~~v~~~L~~L~~KGlI~i~~~~--------d~~g~ 92 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQ----LQEG--MSISVEECTNRLRMFIQKGFLFIEECE--------DQNGI 92 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHH----HHTT--SSSCHHHHHHHHHHHHHHTSCEEEEEE--------CTTCC
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHH----HHHH--HCcCHHHHHHHHHHHHHCCCEEEEeEe--------cCCCc
Confidence 68899999888777766 34445543 3333 258999999999998842222221111 11122
Q ss_pred CCCCCcccccccCCCCchhhhHHHHHHHHhhcCC
Q 031819 83 EDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 116 (152)
Q Consensus 83 DdnrfDlRpfly~~~~~~qf~~id~~~~~~~~~~ 116 (152)
-.++|||.|. |.|++.+++.-+.+.
T Consensus 93 ~~~~ydL~pL---------~ekL~~~~~~~~~~~ 117 (135)
T 2v79_A 93 KFEKYSLQPL---------WGKLYEYIQLAQNQT 117 (135)
T ss_dssp EEEEEECHHH---------HHHHHHHHHHHHC--
T ss_pred eEEEeeHHHH---------HHHHHHHHHHHHHHH
Confidence 2268888887 789999987654433
No 15
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=47.65 E-value=36 Score=25.80 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=28.8
Q ss_pred cccCcCCCHHHHHHHHHHHhhhccChHHHHHH-HHHHhC-CCCC----hHHHHHHHHHHH
Q 031819 5 DEVDMGMTYEELSVYGRLRKIFHCGPVSMFKN-LCYRWG-ARLT----PSEVAEKVKHFF 58 (152)
Q Consensus 5 DE~DMGMTY~ELd~~grLrk~~k~GP~smf~~-L~~~w~-~~~s----p~eia~kVkrFF 58 (152)
-|..-|.-+.|++...| =||+ ++..-. .+.+ ..||++|||-+|
T Consensus 22 kedqagvhfneisaltr-----------dfcrailsdleqsgfttselekeiadkvkimf 70 (146)
T 3zta_A 22 KEDQAGVHFNEISALTR-----------DFCRAILSDLEQSGFTTSELEKEIADKVKIMF 70 (146)
T ss_dssp TSCCTTCCHHHHHHHHH-----------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhcCccHHHHHHHHH-----------HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 45667999999999887 2333 333222 1333 458999999999
No 16
>3rmr_A ATR1, avirulence protein; effector, RPP1-recognized, alpha-helical, W-motif, seahorse, RPP1, R-protein, protein binding; 2.30A {Hyaloperonospora parasitica}
Probab=44.59 E-value=47 Score=27.31 Aligned_cols=86 Identities=19% Similarity=0.345 Sum_probs=53.6
Q ss_pred HHHHhhhccChHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHhhhcccccccC---CCccccccCCCCCCCCcccccccC
Q 031819 20 GRLRKIFHCGPVSMFKNLCYRW-GARLTPSEVAEKVKHFFKYYSINRHKMTVL---TPSYHAESYSPEDNRFDLRQFLYN 95 (152)
Q Consensus 20 grLrk~~k~GP~smf~~L~~~w-~~~~sp~eia~kVkrFF~~ys~NrHKrt~l---tPSfH~e~YspDdnrfDlRpfly~ 95 (152)
--+.+..+..|.--|...++.. +.+...+++...-+-+|++|+..|.--+.. -|.|.-|+|..-..|.|-.-
T Consensus 166 ~aif~yfgsnpsryfsavlhamekp~ad~r~le~sk~wmf~~ya~~~~~~~~fe~~l~~~q~ed~a~~ga~n~y~k---- 241 (260)
T 3rmr_A 166 NAIFEYFGSNPSRYFSAVLHAMEKPDADSRVLESSKKWMFQCYAQKQFPTPVFERTLAAYQSEDYAIRGARNHYEK---- 241 (260)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTC------------CCC----
T ss_pred hHHHHHhcCChhHHHHHHHHHHhCCCchHHHhhcchhHHHHHHhcCCCCChhHHHHHHHhccchhhhhcccchhhh----
Confidence 3457788899999999998844 346788899999999999999887332221 17788899988887777542
Q ss_pred CCCchhhhHHHHHHHHhh
Q 031819 96 ARWPYQFRKIDELVKELD 113 (152)
Q Consensus 96 ~~~~~qf~~id~~~~~~~ 113 (152)
..-..|.++|++..
T Consensus 242 ----ls~sqi~~lv~eys 255 (260)
T 3rmr_A 242 ----LSLSQIEELVEEYS 255 (260)
T ss_dssp ----CCHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHh
Confidence 34467888887653
No 17
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.05 E-value=82 Score=22.19 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=49.2
Q ss_pred CcCCCHHHHHHHHHHHhhh---ccChHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhcccccccCCCccccccCCCCC
Q 031819 8 DMGMTYEELSVYGRLRKIF---HCGPVSMFKNLCYRWGARLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPED 84 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~---k~GP~smf~~L~~~w~~~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~YspDd 84 (152)
++|+|=.|+..+..|.... .++| -...|... -++++.+|...|++.-.-=-+.+ + + +-++-+--.
T Consensus 27 ~lgLt~~e~~vll~L~~~~~~~~~~p--s~~~LA~~--l~~s~~~V~~~l~~Le~kGlI~~---~---~--~~~~~g~~~ 94 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFFEEGVLFP--TPAELAER--MTVSAAECMEMVRRLLQKGMIAI---E---E--HTDEQGIRN 94 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTCSSC--CHHHHHHT--SSSCHHHHHHHHHHHHHTTSSEE---C---C-----------
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCC--CHHHHHHH--HCcCHHHHHHHHHHHHHCCCEEE---E---e--EECCCCcEE
Confidence 6789999988888877642 2333 22334444 25889999988888873222222 1 1 111112222
Q ss_pred CCCcccccccCCCCchhhhHHHHHHHHhh
Q 031819 85 NRFDLRQFLYNARWPYQFRKIDELVKELD 113 (152)
Q Consensus 85 nrfDlRpfly~~~~~~qf~~id~~~~~~~ 113 (152)
|.|||.|. |.||+++++.-+
T Consensus 95 ~~Ydl~pl---------~~kL~~~~~~~~ 114 (128)
T 2vn2_A 95 EKYTLEPL---------WEKLVHHLYTQA 114 (128)
T ss_dssp -CEECHHH---------HHHHHHHHHHHH
T ss_pred EEEehHHH---------HHHHHHHHHHHH
Confidence 68999887 789998886544
No 18
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=36.92 E-value=72 Score=22.94 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=30.0
Q ss_pred ccCcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhCC-CCChHHHHHHH
Q 031819 6 EVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWGA-RLTPSEVAEKV 54 (152)
Q Consensus 6 E~DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~~-~~sp~eia~kV 54 (152)
+.+|+.+|.++..|+.. ....-+|... |+.+|+. +.+..++-+..
T Consensus 43 ~~~~ky~~~~i~~~e~~-~~~~~SPT~~---LL~~Wg~~~~TV~~Ll~lL 88 (113)
T 2a9i_A 43 SGDDRYNQFHIRRFEAL-LQTGLSPTCE---LLFDWGTTNCTVGDLVDLL 88 (113)
T ss_dssp TSSBSSCHHHHHHHHHT-TTTTCCHHHH---HHHHHGGGTCBHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHh-hccCCCHHHH---HHHHHccCCCcHHHHHHHH
Confidence 45899999999999987 4455666654 5677763 34455444443
No 19
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=36.05 E-value=61 Score=23.30 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=28.8
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhC--CCCChHHHHHHHHHH
Q 031819 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWG--ARLTPSEVAEKVKHF 57 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~--~~~sp~eia~kVkrF 57 (152)
+||++|.+|..|++ +-+|.. .|+..|. .+.+...+.+..+..
T Consensus 35 ~Lg~~~~~I~~fe~-----~~sPT~---~lL~~W~~r~~aTVg~L~~~L~~i 78 (110)
T 3mop_A 35 EMDFEYLEIRQLET-----QADPTG---RLLDAWQGRPGASVGRLLELLTKL 78 (110)
T ss_dssp TTTCCHHHHHHHTS-----SSSHHH---HHHHHHHSSSSCSHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhC-----CCCcHH---HHHHHHhcCCCCcHHHHHHHHHHc
Confidence 79999999999876 457754 4566774 345666666655443
No 20
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=33.07 E-value=59 Score=22.68 Aligned_cols=31 Identities=16% Similarity=0.032 Sum_probs=22.1
Q ss_pred CcCCCHHHHHHHHHHHhhhccChHHHHHHHHHHhC
Q 031819 8 DMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYRWG 42 (152)
Q Consensus 8 DMGMTY~ELd~~grLrk~~k~GP~smf~~L~~~w~ 42 (152)
.||+++.+|+.|.. ...+..+--..|+..|.
T Consensus 38 ~Lg~~~~~I~~ie~----~~~~~~eq~~~mL~~W~ 68 (110)
T 1wxp_A 38 YLEMKDSEIRQIEC----DSEDMKMRAKQLLVAWQ 68 (110)
T ss_dssp TTTCCHHHHHHHHH----HCSSHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH----cCCCHHHHHHHHHHHHH
Confidence 58999999998773 44566566666666674
No 21
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=28.63 E-value=20 Score=25.25 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHHhhhcccccccCCCccccccCCCCCCCCcccccccCCCCch----hhhHHHHHHHHhhcC
Q 031819 44 RLTPSEVAEKVKHFFKYYSINRHKMTVLTPSYHAESYSPEDNRFDLRQFLYNARWPY----QFRKIDELVKELDGE 115 (152)
Q Consensus 44 ~~sp~eia~kVkrFF~~ys~NrHKrt~ltPSfH~e~YspDdnrfDlRpfly~~~~~~----qf~~id~~~~~~~~~ 115 (152)
.|.|.+||..||.|| .=.++.++ .-.-+||-=-+|.|..=.= -++.|..+|.+|...
T Consensus 6 ~Y~P~~IAK~VktlF-------------~Gri~I~g--~G~FeFd~GkillP~~~d~~~~~~~sEIN~~I~~L~~e 66 (78)
T 2jro_A 6 VYAPKLIVKHARIFL-------------TGVIWVKD--LGRLEFEKGRFLLPRKSLPKVKQAILELNELIEAQNHQ 66 (78)
T ss_dssp SCCHHHHHHHHHHHC-------------SEEEEETT--TEEEEEETTEECCCSSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHc-------------cceEEEEe--cccEEEcCCEEeCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999 23344433 2334677667777765422 244555556665543
No 22
>3v62_C ATP-dependent DNA helicase SRS2, proliferating cell nuclear antigen; ubiquitin-like protein PCNA; HET: MLY; 2.90A {Saccharomyces cerevisiae}
Probab=23.97 E-value=16 Score=25.20 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccccCCC
Q 031819 80 YSPEDNRFDLRQFLYNAR 97 (152)
Q Consensus 80 YspDdnrfDlRpfly~~~ 97 (152)
.+|||-+.|-||.|-|+.
T Consensus 2 HNPdDl~iDnRPIltnAK 19 (69)
T 3v62_C 2 HNPDDTTVDNRPIISNAK 19 (69)
T ss_dssp ------------------
T ss_pred CCcccccccCcchhhhhH
Confidence 589999999999999985
Done!