Query 031820
Match_columns 152
No_of_seqs 133 out of 1156
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:48:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 100.0 2.4E-48 5.3E-53 347.9 7.0 149 1-152 206-362 (550)
2 PLN03167 Chaperonin-60 beta su 100.0 2.9E-37 6.3E-42 282.0 12.2 148 1-151 247-401 (600)
3 PRK14104 chaperonin GroEL; Pro 100.0 5.8E-35 1.3E-39 264.0 11.1 148 1-151 193-347 (546)
4 PRK12852 groEL chaperonin GroE 100.0 2E-34 4.3E-39 260.1 11.6 148 1-151 193-347 (545)
5 PTZ00114 Heat shock protein 60 100.0 4E-33 8.7E-38 252.2 11.6 148 1-151 204-359 (555)
6 CHL00093 groEL chaperonin GroE 100.0 9.8E-33 2.1E-37 248.3 10.9 147 1-151 192-346 (529)
7 PRK12851 groEL chaperonin GroE 100.0 4E-31 8.6E-36 238.8 11.7 148 1-151 193-347 (541)
8 TIGR02348 GroEL chaperonin Gro 100.0 5.2E-31 1.1E-35 237.0 11.8 148 1-151 191-345 (524)
9 PRK00013 groEL chaperonin GroE 100.0 5.9E-31 1.3E-35 237.8 12.0 148 1-151 192-346 (542)
10 PRK12850 groEL chaperonin GroE 100.0 6.6E-31 1.4E-35 237.5 11.7 148 1-151 193-347 (544)
11 PRK12849 groEL chaperonin GroE 100.0 1E-29 2.2E-34 229.9 11.9 148 1-151 192-346 (542)
12 cd03344 GroEL GroEL_like type 100.0 3.8E-29 8.3E-34 224.9 12.2 148 1-151 190-344 (520)
13 COG0459 GroL Chaperonin GroEL 99.9 9.7E-28 2.1E-32 216.8 -0.5 130 1-142 199-333 (524)
14 TIGR02343 chap_CCT_epsi T-comp 99.5 1.6E-14 3.5E-19 130.4 8.1 126 1-142 223-374 (532)
15 cd03339 TCP1_epsilon TCP-1 (CT 99.5 2E-14 4.3E-19 129.3 8.3 126 1-142 219-370 (526)
16 cd03338 TCP1_delta TCP-1 (CTT 99.5 1.7E-14 3.8E-19 129.2 6.8 120 1-132 203-345 (515)
17 cd03343 cpn60 cpn60 chaperonin 99.5 8.1E-14 1.7E-18 124.8 9.0 122 1-143 211-361 (517)
18 cd03342 TCP1_zeta TCP-1 (CTT o 99.5 3.8E-14 8.2E-19 126.6 5.3 117 1-142 206-326 (484)
19 TIGR02342 chap_CCT_delta T-com 99.5 1.4E-13 3.1E-18 123.7 7.7 123 1-134 204-349 (517)
20 TIGR02345 chap_CCT_eta T-compl 99.4 5.8E-14 1.3E-18 126.4 4.4 114 1-131 211-349 (522)
21 TIGR02339 thermosome_arch ther 99.4 4.5E-13 9.7E-18 120.3 8.1 121 1-142 214-363 (519)
22 TIGR02346 chap_CCT_theta T-com 99.4 1.2E-13 2.6E-18 124.8 4.2 108 7-131 234-346 (531)
23 PTZ00212 T-complex protein 1 s 99.4 1.1E-13 2.3E-18 125.0 2.8 127 2-140 210-367 (533)
24 TIGR02340 chap_CCT_alpha T-com 99.4 1.3E-13 2.9E-18 124.4 0.4 122 1-143 210-366 (536)
25 cd03335 TCP1_alpha TCP-1 (CTT 99.3 5.2E-12 1.1E-16 113.8 9.2 122 1-142 206-361 (527)
26 TIGR02347 chap_CCT_zeta T-comp 99.3 1.9E-13 4.2E-18 123.6 -0.8 122 1-143 210-370 (531)
27 cd00309 chaperonin_type_I_II c 99.3 1.1E-11 2.3E-16 109.6 8.5 101 1-139 201-307 (464)
28 cd03336 TCP1_beta TCP-1 (CTT o 99.3 2.1E-12 4.6E-17 116.1 4.1 120 2-131 198-343 (517)
29 TIGR02341 chap_CCT_beta T-comp 99.3 2.9E-12 6.4E-17 115.5 4.7 120 2-131 199-344 (519)
30 cd03333 chaperonin_like chaper 99.3 1.7E-11 3.7E-16 97.5 7.8 94 1-132 65-160 (209)
31 cd03341 TCP1_theta TCP-1 (CTT 99.2 4.3E-11 9.4E-16 106.6 8.1 101 13-141 207-311 (472)
32 cd03340 TCP1_eta TCP-1 (CTT or 99.1 4.6E-10 1E-14 101.0 10.8 122 1-141 210-374 (522)
33 PF00118 Cpn60_TCP1: TCP-1/cpn 99.1 3.3E-10 7.2E-15 99.0 7.4 116 3-139 180-323 (485)
34 TIGR02344 chap_CCT_gamma T-com 99.0 1.1E-09 2.4E-14 98.6 7.3 111 17-142 224-364 (525)
35 cd03337 TCP1_gamma TCP-1 (CTT 98.9 4.1E-09 8.9E-14 94.2 6.7 103 2-141 215-322 (480)
36 cd03334 Fab1_TCP TCP-1 like do 96.9 0.0059 1.3E-07 51.0 8.8 102 16-131 78-198 (261)
37 KOG0357 Chaperonin complex com 92.0 0.14 3E-06 45.5 3.0 81 45-142 151-238 (400)
38 KOG0360 Chaperonin complex com 78.4 1.6 3.4E-05 40.5 2.4 81 46-141 282-371 (545)
39 COG1880 CdhB CO dehydrogenase/ 78.1 2.1 4.6E-05 34.4 2.7 61 23-83 10-71 (170)
40 TIGR00362 DnaA chromosomal rep 54.1 36 0.00079 29.6 5.8 75 23-104 198-285 (405)
41 PF07002 Copine: Copine; Inte 52.3 22 0.00047 27.5 3.7 31 26-56 112-142 (146)
42 COG1358 RPL8A Ribosomal protei 52.0 12 0.00027 28.1 2.2 34 50-83 44-79 (116)
43 PF01985 CRS1_YhbY: CRS1 / Yhb 47.6 39 0.00085 23.5 4.1 62 46-110 13-75 (84)
44 PF12694 MoCo_carrier: Putativ 46.4 36 0.00077 26.8 4.1 69 24-98 65-142 (145)
45 PRK06893 DNA replication initi 45.3 37 0.00081 27.3 4.2 75 21-101 88-175 (229)
46 KOG0359 Chaperonin complex com 44.3 24 0.00051 32.8 3.1 47 94-142 311-360 (520)
47 cd01459 vWA_copine_like VWA Co 39.8 39 0.00084 28.5 3.6 36 26-61 160-195 (254)
48 PRK06620 hypothetical protein; 37.3 47 0.001 26.7 3.7 69 24-101 85-161 (214)
49 PRK13600 putative ribosomal pr 36.4 30 0.00065 24.6 2.1 34 49-83 29-62 (84)
50 KOG0230 Phosphatidylinositol-4 36.2 60 0.0013 34.3 4.8 98 16-129 392-509 (1598)
51 PF14307 Glyco_tran_WbsX: Glyc 36.2 47 0.001 28.7 3.7 52 7-59 143-199 (345)
52 PRK00149 dnaA chromosomal repl 35.0 75 0.0016 28.2 4.9 75 23-104 210-297 (450)
53 COG1847 Jag Predicted RNA-bind 34.8 22 0.00047 29.6 1.3 42 64-108 119-161 (208)
54 PRK14088 dnaA chromosomal repl 34.7 1E+02 0.0022 27.7 5.7 74 24-104 194-280 (440)
55 cd01461 vWA_interalpha_trypsin 33.9 1.6E+02 0.0035 21.4 5.9 18 93-110 142-159 (171)
56 PF01577 Peptidase_S30: Potyvi 32.6 1.8E+02 0.0039 23.4 6.4 128 6-150 81-233 (245)
57 PRK13695 putative NTPase; Prov 32.0 1.9E+02 0.0041 21.7 6.1 14 45-58 122-135 (174)
58 COG3363 Archaeal IMP cyclohydr 30.3 68 0.0015 26.3 3.4 75 67-152 7-85 (200)
59 PF03103 DUF243: Domain of unk 29.3 45 0.00097 24.5 2.1 21 63-83 20-41 (97)
60 COG3959 Transketolase, N-termi 29.0 59 0.0013 27.7 3.0 26 35-60 214-242 (243)
61 PRK13809 orotate phosphoribosy 28.5 34 0.00075 27.8 1.5 66 2-82 29-98 (206)
62 COG0459 GroL Chaperonin GroEL 28.0 3.2E+02 0.0069 25.4 7.9 94 21-130 229-340 (524)
63 KOG0363 Chaperonin complex com 27.8 27 0.00058 32.0 0.8 55 66-127 289-344 (527)
64 PF00308 Bac_DnaA: Bacterial d 27.1 1.4E+02 0.0031 23.9 4.9 79 21-105 94-184 (219)
65 PF01808 AICARFT_IMPCHas: AICA 26.0 54 0.0012 28.7 2.3 84 51-144 194-303 (315)
66 COG4819 EutA Ethanolamine util 25.9 81 0.0018 28.7 3.5 32 48-79 406-437 (473)
67 PF04810 zf-Sec23_Sec24: Sec23 25.6 39 0.00086 20.3 1.1 12 5-16 9-21 (40)
68 PRK14086 dnaA chromosomal repl 24.6 1.7E+02 0.0037 28.0 5.5 76 22-103 375-462 (617)
69 cd03340 TCP1_eta TCP-1 (CTT or 24.0 36 0.00079 30.9 0.9 59 47-109 244-312 (522)
70 PF14242 DUF4342: Domain of un 23.9 81 0.0018 22.3 2.5 17 122-138 29-45 (84)
71 TIGR02918 accessory Sec system 23.8 1.4E+02 0.003 27.3 4.6 57 3-60 142-221 (500)
72 COG2089 SpsE Sialic acid synth 23.8 1.2E+02 0.0025 27.2 4.0 84 22-113 146-238 (347)
73 PRK07106 5-aminoimidazole-4-ca 23.0 76 0.0016 28.8 2.7 87 51-146 136-250 (390)
74 PF13987 YedD: YedD-like prote 22.7 26 0.00057 26.3 -0.2 26 58-83 23-53 (111)
75 KOG1327 Copine [Signal transdu 21.7 1.2E+02 0.0026 28.6 3.8 42 25-66 416-457 (529)
76 cd02685 MIT_C MIT_C; domain fo 21.3 1E+02 0.0022 24.3 2.8 98 8-141 11-113 (148)
77 COG4148 ModC ABC-type molybdat 21.1 88 0.0019 27.8 2.7 42 20-61 142-191 (352)
78 KOG0358 Chaperonin complex com 20.2 93 0.002 28.8 2.7 72 45-127 285-357 (534)
79 PF00391 PEP-utilizers: PEP-ut 20.1 73 0.0016 21.6 1.6 27 48-75 8-34 (80)
80 PRK13601 putative L7Ae-like ri 20.0 1E+02 0.0022 21.6 2.4 20 48-67 23-42 (82)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-48 Score=347.88 Aligned_cols=149 Identities=29% Similarity=0.401 Sum_probs=145.5
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|+|||||+|||| |+++++++|||||++|++++||+++++|+|+| +.+..+||+||||||++|||++||+||+|++++
T Consensus 206 mkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glq 285 (550)
T KOG0356|consen 206 MKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQ 285 (550)
T ss_pred ccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhcccee
Confidence 899999999999 99999999999999999999999999999999 778889999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec----cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhcC
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG----ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHS 152 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~----~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~~ 152 (152)
|| ||+| ||||+|++.|+|||++|||+++.+ ++|+.+++++||.|.++++|||+|+|+.|.+++++++.|+++
T Consensus 286 V~AvKap---gfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeq 362 (550)
T KOG0356|consen 286 VVAVKAP---GFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQ 362 (550)
T ss_pred EEEEecC---CCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHH
Confidence 99 9999 999999999999999999999999 788999999999999999999999999999999999999873
No 2
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=282.00 Aligned_cols=148 Identities=24% Similarity=0.347 Sum_probs=143.2
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||+|||| ||+++|..+|+||+||++|.+|++.++++|+| +.+.++||||+|++|+++||++|++||++|.++
T Consensus 247 ~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~ 326 (600)
T PLN03167 247 MQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLK 326 (600)
T ss_pred EEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccce
Confidence 579999999999 99999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
+| ||+| +||++|++.|+|||++|||+++++ +++++++.++||+|.+|++++|+|+|+++.|+++.+++|+.
T Consensus 327 i~aVk~p---~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~ 401 (600)
T PLN03167 327 IAALKAP---GFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVA 401 (600)
T ss_pred EEEEEcc---cCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHH
Confidence 99 9999 999999999999999999999997 57899999999999999999999999999999999999874
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.8e-35 Score=264.03 Aligned_cols=148 Identities=27% Similarity=0.410 Sum_probs=143.3
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||+|||| +|+++|.++++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||++|+.||++|+++
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~ 272 (546)
T PRK14104 193 MQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLK 272 (546)
T ss_pred EEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceee
Confidence 579999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|| ||+| +||++|++.|+|||++|||+++++ ++++++++++||+|.++++++++|++++|.++++++.+|++
T Consensus 273 i~av~~~---~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~ 347 (546)
T PRK14104 273 VAAVKAP---GFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVA 347 (546)
T ss_pred EEEEecc---CCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999998 66899999999999999999999999999999999999885
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2e-34 Score=260.10 Aligned_cols=148 Identities=26% Similarity=0.420 Sum_probs=142.8
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||+|||| +|+++|.++++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||++|+.||++|+++
T Consensus 193 ~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~ 272 (545)
T PRK12852 193 MKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLK 272 (545)
T ss_pred EEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccce
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++ ||+| +||++|+..|+|||++|||+++++ .+++++++++||+|.++++++++|++++|.+++++++.|++
T Consensus 273 i~av~~~---~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~ 347 (545)
T PRK12852 273 VAAVKAP---GFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVG 347 (545)
T ss_pred EEEEecC---CcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999996 57899999999999999999999999999999999988875
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=4e-33 Score=252.23 Aligned_cols=148 Identities=34% Similarity=0.490 Sum_probs=142.3
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||+|||| ||+++|..+++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||+.|+.|+++|+++
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~ 283 (555)
T PTZ00114 204 MSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLK 283 (555)
T ss_pred EEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceE
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec----cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG----ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~----~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++ ||.| +||++|+..|+|||.+|||+++++ ..+++++.++||+|++|++++++|++++|.+++++|++|+.
T Consensus 284 i~avk~~---~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~ 359 (555)
T PTZ00114 284 VCAVKAP---GFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVE 359 (555)
T ss_pred EEEEecC---CCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHH
Confidence 99 9999 999999999999999999999998 45688889999999999999999999999999999999874
No 6
>CHL00093 groEL chaperonin GroEL
Probab=99.98 E-value=9.8e-33 Score=248.35 Aligned_cols=147 Identities=27% Similarity=0.422 Sum_probs=139.1
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccch-HHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccc
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSK-NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQN 76 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~-~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l 76 (152)
|.||+||+|||| +++++|+++|+||+||++|.+|+.. ++++|+| +.+.++||+|+|++|++++|++|++||++|++
T Consensus 192 ~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~ 271 (529)
T CHL00093 192 MRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIV 271 (529)
T ss_pred EEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccc
Confidence 579999999999 9999999999999999999999998 7899999 88999999999999999999999999999999
Q ss_pred eEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 77 KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 77 ~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++| ||.| +||++||+.|+|||.+|||+++++ .+++++++++||+|.+|.++++.|++++ .|++++|++|++
T Consensus 272 ~i~avr~~---~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~ 346 (529)
T CHL00093 272 NVVAVRAP---GFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCE 346 (529)
T ss_pred eEEEEecC---CCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHH
Confidence 999 9999 999999999999999999999996 5789999999999999999999999998 778888887764
No 7
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=4e-31 Score=238.79 Aligned_cols=148 Identities=28% Similarity=0.429 Sum_probs=141.7
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|+| +.+.++||||++++|+++||+.|+.|+++|+++
T Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~ 272 (541)
T PRK12851 193 MQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 272 (541)
T ss_pred EEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCcee
Confidence 479999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|+ ||+| +||+.|+..|+|||.+|||+++++ .+++++++++||+|++++++++.|++++|.++++++.+|++
T Consensus 273 i~av~~p---~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~ 347 (541)
T PRK12851 273 VAAVKAP---GFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVA 347 (541)
T ss_pred EEEEecC---ccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999996 57899999999999999999999999999999988888774
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.97 E-value=5.2e-31 Score=236.97 Aligned_cols=148 Identities=28% Similarity=0.425 Sum_probs=141.1
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|+| +.+.+.||||++++|+++||+.|+.||++|+++
T Consensus 191 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~ 270 (524)
T TIGR02348 191 MQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLN 270 (524)
T ss_pred EEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccc
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++ ||+| +||++|+..|+|||++|||+++++ ++++++++++||+|.++++++++|++++|.++++++.+|+.
T Consensus 271 i~avr~~---~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~ 345 (524)
T TIGR02348 271 VCAVKAP---GFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVA 345 (524)
T ss_pred eEEEECC---CccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999996 57899999999999999999999999999999888777663
No 9
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=5.9e-31 Score=237.82 Aligned_cols=148 Identities=28% Similarity=0.420 Sum_probs=141.5
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||.|||| +++++|..+++||+||++|.+|+++++++|+| +.+.+.||||++++|+++||+.|+.|+++|+++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~ 271 (542)
T PRK00013 192 MQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLK 271 (542)
T ss_pred EEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccce
Confidence 479999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++ ||.| +||++|+..|+|||.+|||+++++ .+++++++++||+|.++++++++++++.|.++++++..|++
T Consensus 272 i~avr~~---~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~ 346 (542)
T PRK00013 272 VVAVKAP---GFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVA 346 (542)
T ss_pred EEEEecC---CcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999996 57899999999999999999999999999999888877764
No 10
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=6.6e-31 Score=237.47 Aligned_cols=148 Identities=29% Similarity=0.425 Sum_probs=141.7
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|++ +.+.+.||||++++|+++||+.|+.|+++|+++
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~ 272 (544)
T PRK12850 193 MQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLK 272 (544)
T ss_pred EEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccce
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++ ||+| +||++|+..|+|||.+|||+++++ .+++++++++||+|.+++++++.|++++|.+++.++..||+
T Consensus 273 ~~avk~p---~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~ 347 (544)
T PRK12850 273 SVAVKAP---GFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVK 347 (544)
T ss_pred EEEEeCC---CcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999996 57899999999999999999999999999999988887764
No 11
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=1e-29 Score=229.86 Aligned_cols=148 Identities=28% Similarity=0.410 Sum_probs=141.1
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||.|||| ++.++|..+++||+||++|.+|++.++++|+| +.+.+.||+|++++|+++||..|+.|+++|.++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~ 271 (542)
T PRK12849 192 MQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 271 (542)
T ss_pred EEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhcccc
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
++ ||.| +||++|+..|+|||.+|||+++++ .++++++.++||+|+++++++++|++++|.++++++..|+.
T Consensus 272 i~avr~~---~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~ 346 (542)
T PRK12849 272 VAAVKAP---GFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVA 346 (542)
T ss_pred EEEEeCC---CccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999996 57889999999999999999999999999999988877763
No 12
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.96 E-value=3.8e-29 Score=224.87 Aligned_cols=148 Identities=28% Similarity=0.430 Sum_probs=141.3
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|.||+||.|||| +++++|..+++||+||++|..+++.++++|+| +.+.++||+|++++|+++||..|+.|+++|.++
T Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~ 269 (520)
T cd03344 190 MQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLK 269 (520)
T ss_pred EEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCce
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|+ ||+| +||+.|+..|+|||.+|||+++++ .++++++.++||+|++++++++++++++|.+++++|++|+.
T Consensus 270 v~avk~~---~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~ 344 (520)
T cd03344 270 VCAVKAP---GFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIA 344 (520)
T ss_pred EEEEeCC---CCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999997 47888888999999999999999999999989988888874
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.7e-28 Score=216.77 Aligned_cols=130 Identities=28% Similarity=0.340 Sum_probs=121.7
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|+||+||+|||| +| .+++||+||++|+||+..++.+| + ..+.++||+||+||+++|+|++++.|+++++++
T Consensus 199 ~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~ 272 (524)
T COG0459 199 MVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGAN 272 (524)
T ss_pred EEecCCccCCCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789999999999 88 78889999999999999999999 6 778889999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec-cccCCCCCCCCceeeEEEEeCCceEEEcCCCC
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVA 142 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~ 142 (152)
|| |++| ||||+|+++|+|++|+||+++.++ +. + .+..+|.|+++.+.+|.|.+..|.|.
T Consensus 273 ~vvv~~~---gi~D~~~~~L~d~~Ilt~~~v~~~dl~-~--~l~~~~ga~~v~~~~d~t~~~~G~~~ 333 (524)
T COG0459 273 VVVVKAP---GIDDLAKAYLEDIAILTGRRVKKEDLG-E--RLAKLGGAKIVSVLKDLTTIVLGEGA 333 (524)
T ss_pred EEEEECC---CCcHHHHHHHHhhcceecceecchhhH-H--HHHHccCceEEeecccCceeecCccc
Confidence 77 9999 999999999999999999999988 53 2 78899999999999999999988753
No 14
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.53 E-value=1.6e-14 Score=130.39 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=105.3
Q ss_pred CccCCccccccc-cCCCC-----ceEEeeCceEEEeccc--ccchHHH-----------HHHH--HhhcCCCeEEEeccc
Q 031820 1 MKLKWRPVSSYF-TNQKA-----KDCVLENPFLLILENM--IVSKNIV-----------EQAI--AQADSRPLLIVAEDV 59 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~-----~~~ele~p~ILltd~k--Is~~~~i-----------lp~L--~~~~~rpLlIiAedv 59 (152)
|.||+||.+||| ++.++ ..++||.|++ -++.+ |++++++ .+++ +.+.+.||+|++++|
T Consensus 223 i~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~-~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I 301 (532)
T TIGR02343 223 IIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF 301 (532)
T ss_pred EEEecCcCCCCCCeeecCCcEEEEEeecccccc-ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 468999999999 99888 8899999999 57888 8899888 8888 788899999999999
Q ss_pred ccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE-----EeCCce
Q 031820 60 EDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL-----YQMTRW 134 (152)
Q Consensus 60 ~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~-----vtkd~T 134 (152)
+++|+..|.-|++.+ ||-+ |.++ |+|||.+|||++++. ++++++++||+|++|. .+++++
T Consensus 302 ~~~al~~L~~~~i~~-----v~~~-----~~~~---l~~Ia~~tGa~~i~~--l~~~~~~~LG~a~~v~~~~ig~~~~~~ 366 (532)
T TIGR02343 302 DDEANHLLLQNDLPA-----VRWV-----GGHE---LELIAIATGGRIVPR--FEELSEDKLGKAGLVREISFGTTKDRM 366 (532)
T ss_pred cHHHHHHHHHCCcEE-----EEcC-----CHHH---HHHHHHHhCCEEecc--cccCCHhHCcccceEEEEEecCCcceE
Confidence 999999999997653 6755 3333 999999999999986 6677888999999988 444567
Q ss_pred EEEcCCCC
Q 031820 135 LSLVGLVA 142 (152)
Q Consensus 135 ~il~g~g~ 142 (152)
+++.|.++
T Consensus 367 ~~i~~~~~ 374 (532)
T TIGR02343 367 LVIEQCKN 374 (532)
T ss_pred EEEECCCC
Confidence 77766554
No 15
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.53 E-value=2e-14 Score=129.31 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=104.5
Q ss_pred CccCCccccccc-cCCCC-----ceEEeeCceEEEeccc--ccchHH-----------HHHHH--HhhcCCCeEEEeccc
Q 031820 1 MKLKWRPVSSYF-TNQKA-----KDCVLENPFLLILENM--IVSKNI-----------VEQAI--AQADSRPLLIVAEDV 59 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~-----~~~ele~p~ILltd~k--Is~~~~-----------ilp~L--~~~~~rpLlIiAedv 59 (152)
|.|++||.|||| ++.++ ..++||+|++ .++.+ |+++++ +.+++ +.+.+.||+|++++|
T Consensus 219 ivi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~-~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I 297 (526)
T cd03339 219 IVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF 297 (526)
T ss_pred EEEecccCCCCCCceecCCCEEEEEecccCCcc-ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 468999999999 99888 8899999999 57777 888887 77777 788899999999999
Q ss_pred ccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE-----EeCCce
Q 031820 60 EDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL-----YQMTRW 134 (152)
Q Consensus 60 ~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~-----vtkd~T 134 (152)
+++|+..|.-|++. |||.+ + .+ .|+|||.+|||++++. +++++++.||+|+++. .+++.+
T Consensus 298 ~~~al~~L~~~~I~-----av~~v---~--~~---~LerIa~~tGa~ii~~--l~~l~~~~LG~~~~v~~~~ig~~~~~~ 362 (526)
T cd03339 298 DDEANHLLLQNGLP-----AVRWV---G--GV---EIELIAIATGGRIVPR--FEDLSPEKLGKAGLVREISFGTTKDKM 362 (526)
T ss_pred CHHHHHHHHHCCCE-----EEEeC---C--HH---HHHHHHHHhCCEEecc--hhhCChhhcccCceEEEEEecCCCcEE
Confidence 99999999987766 46767 2 22 2999999999999985 6677788999999988 445677
Q ss_pred EEEcCCCC
Q 031820 135 LSLVGLVA 142 (152)
Q Consensus 135 ~il~g~g~ 142 (152)
+++.|.++
T Consensus 363 ~~i~g~~~ 370 (526)
T cd03339 363 LVIEGCPN 370 (526)
T ss_pred EEEECCCC
Confidence 77766543
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.52 E-value=1.7e-14 Score=129.15 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=102.0
Q ss_pred CccCCccccc----cc-cCCCC---------ceEEeeCceEEEecc-cccch-----HHHHHHH--HhhcCCCeEEEecc
Q 031820 1 MKLKWRPVSS----YF-TNQKA---------KDCVLENPFLLILEN-MIVSK-----NIVEQAI--AQADSRPLLIVAED 58 (152)
Q Consensus 1 m~fdrGylSp----yf-td~~~---------~~~ele~p~ILltd~-kIs~~-----~~ilp~L--~~~~~rpLlIiAed 58 (152)
|.|++||.|| +| +|++- ++.++++++ ++++. ++.++ +++.+++ +.+.+.||+|++++
T Consensus 203 iv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~-~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 281 (515)
T cd03338 203 LVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI-VVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKS 281 (515)
T ss_pred EEEeccccCcCCCCccccCCcEEEEeccccccccccCceE-EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4699999995 58 98876 557888888 66774 66666 7788988 88889999999999
Q ss_pred cccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeCC
Q 031820 59 VEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQMT 132 (152)
Q Consensus 59 v~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtkd 132 (152)
|++++++.++.|.+++ .+++ |+- .++..|+|||.+|||++++. +++++.++||+|+++.+++.
T Consensus 282 i~~~~v~~l~~~~l~~-~~I~av~~--------~~~~~LerIa~~tGa~ii~s--l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 282 ILRDAVSDLALHFLAK-LKIMVVKD--------IEREEIEFICKTIGCKPVAS--IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred cccccccHHHHHHHHH-CCceEEec--------CCHHHHHHHHHHHCCEEecc--cccCCHhhCCCCceEEEEEE
Confidence 9999999999999997 8888 883 56778999999999999986 66677889999999998874
No 17
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.49 E-value=8.1e-14 Score=124.79 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=99.8
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccc-------------ccchHHHHHHH-------------HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIVEQAI-------------AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~k-------------Is~~~~ilp~L-------------~~~~~rpLlI 54 (152)
|.|++||.|||| ...++||.||++|.+ +++.+++.|++ +.+.+.||+|
T Consensus 211 ~v~~~~~~~~~m------~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi 284 (517)
T cd03343 211 IVIDKEVVHPGM------PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVF 284 (517)
T ss_pred EEEeccCCCCCC------ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 468999999997 245789999999999 68999999863 4567899999
Q ss_pred EecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---C
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ---M 131 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt---k 131 (152)
++++|+++|+..|. .+|.+ ||+.. ++..|+|||.+|||++++. +++++.+.||+|+++.+. +
T Consensus 285 ~~~~I~~~al~~l~---~~gI~--~v~~v--------~~~~l~~Ia~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~ig~ 349 (517)
T cd03343 285 CQKGIDDLAQHYLA---KAGIL--AVRRV--------KKSDMEKLARATGAKIVTN--IDDLTPEDLGEAELVEERKVGD 349 (517)
T ss_pred eCCCccHHHHHHHh---HCCcE--EEEeC--------CHHHHHHHHHHhCCEEecc--hhhCChhhCCccceEEEEEECC
Confidence 99999999999886 25543 35544 3668999999999999986 566777899999999998 7
Q ss_pred CceEEEcCCCCh
Q 031820 132 TRWLSLVGLVAS 143 (152)
Q Consensus 132 d~T~il~g~g~~ 143 (152)
+++++++|.+++
T Consensus 350 ~~~~~~~~~~~~ 361 (517)
T cd03343 350 DKMVFVEGCKNP 361 (517)
T ss_pred eEEEEEEcCCCC
Confidence 788888776553
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.47 E-value=3.8e-14 Score=126.62 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=96.1
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccccchHHHHHHHHhhcCCCeEEEecccccchhhhhhcccccccceEE-
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS- 79 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~- 79 (152)
|.||+||.|||| ..+++||+||++|.+++..++-++.. ...||+|++++|+++||..|..|+ ++
T Consensus 206 ~~~~~~~~~~~m------~~~~~n~~Ill~~~~le~~~~~~~~~---~~~~lvi~~~~I~~~al~~l~~~~------I~a 270 (484)
T cd03342 206 LVLDHGARHPDM------PKRVENAYILTCNVSLEYEKTEVNSG---FFYSVVINQKGIDPPSLDMLAKEG------ILA 270 (484)
T ss_pred EEEecCCCCCCC------CccccCceEEEEeCCCCCCccccCcE---EEEEEEEeCCCccHHHHHHHHHCC------CeE
Confidence 468999999998 44578999999999999887633322 124699999999999999999994 56
Q ss_pred EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEE---EEeCCceEEEcCCCC
Q 031820 80 IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEL---LYQMTRWLSLVGLVA 142 (152)
Q Consensus 80 VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v---~vtkd~T~il~g~g~ 142 (152)
||.. ++..|+|||.+|||++++. +++++.++||+|++| .++.+++++++|.++
T Consensus 271 v~~~--------~~~~l~~ia~~tGa~ii~~--l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~ 326 (484)
T cd03342 271 LRRA--------KRRNMERLTLACGGVAMNS--VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN 326 (484)
T ss_pred EEeC--------CHHHHHHHHHHhCCEEecc--cccCChhhCcccceEEEEEECCeEEEEEECCCC
Confidence 8866 3447999999999999986 677888899999999 888888888877654
No 19
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.45 E-value=1.4e-13 Score=123.70 Aligned_cols=123 Identities=10% Similarity=0.112 Sum_probs=103.2
Q ss_pred CccCCcccc----ccc-cCCC---------CceEEeeCceEEEe----cccccc-hHHHHHHH--HhhcCCCeEEEeccc
Q 031820 1 MKLKWRPVS----SYF-TNQK---------AKDCVLENPFLLIL----ENMIVS-KNIVEQAI--AQADSRPLLIVAEDV 59 (152)
Q Consensus 1 m~fdrGylS----pyf-td~~---------~~~~ele~p~ILlt----d~kIs~-~~~ilp~L--~~~~~rpLlIiAedv 59 (152)
|.||+||.| |++ +|++ ..+.++++++++.+ ++.+.. .+.+.+++ +.+.+.||||++++|
T Consensus 204 ivl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I 283 (517)
T TIGR02342 204 LVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSI 283 (517)
T ss_pred EEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 468999999 888 8886 66788899999866 455555 46888988 888899999999999
Q ss_pred ccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE-EeCCce
Q 031820 60 EDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL-YQMTRW 134 (152)
Q Consensus 60 ~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~-vtkd~T 134 (152)
++++++.++.|.+++ .+++ |+- .++..|+|||.+|||++++. +++++.++||+|+++. ++..++
T Consensus 284 ~~~~l~~l~~~~l~~-~~I~av~~--------v~~~~LerIa~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~~~~~ 349 (517)
T TIGR02342 284 LRDAVNDLALHFLAK-MKIMVVKD--------IEREEVEFICKTIGCKPIAS--IDHFTADKLGSAELVEEVTTDGG 349 (517)
T ss_pred ccccccHHHHHHHhh-CCceEEec--------CCHHHHHHHHHHHCCEEEcc--hhhcCcccCcCCceEEEEEECCe
Confidence 999999999999999 8888 884 45678999999999999986 5667788999999999 554443
No 20
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.44 E-value=5.8e-14 Score=126.36 Aligned_cols=114 Identities=24% Similarity=0.237 Sum_probs=97.7
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHHHhhcCCCeEEEeccccc-----chhhhhhcccccc
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED-----KLIGSLILGKTCL 74 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~-----eaL~tLv~Nklrg 74 (152)
|.||+||.|||| +++. .++||+||++|.+++.. +...|+.|++++++. +++..++.|++++
T Consensus 211 iv~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~---------~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~ 277 (522)
T TIGR02345 211 VAFKKTFSYAGFEQQPK----KFANPKILLLNVELELK---------AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEK 277 (522)
T ss_pred eEEecccCccccccCCc----eeccceEEEEecCcccC---------ccccceEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999 8774 48999999999997643 456799999999999 9999999999998
Q ss_pred cc----eEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec-c-------------ccCCCCCCCCceeeEEEEeC
Q 031820 75 QN----KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-A-------------TNVSFMPLMLGSCKELLYQM 131 (152)
Q Consensus 75 ~l----~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~-------------~l~~~~~~~LG~a~~v~vtk 131 (152)
.. +|| ++.| ||++++++|+|.+|+|++++.+. + ++++++.++||+|+.+...+
T Consensus 278 i~~~g~~vv~~~~~----i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~ 349 (522)
T TIGR02345 278 IVESGANVVLSKLP----IGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQ 349 (522)
T ss_pred HHhcCCcEEEeCCC----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEE
Confidence 54 888 7766 89999999999999999998877 2 56888889999998887543
No 21
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.41 E-value=4.5e-13 Score=120.33 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=98.8
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccc-------------ccchHHHHHHH-------------HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIVEQAI-------------AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~k-------------Is~~~~ilp~L-------------~~~~~rpLlI 54 (152)
|.|++||+|| +|...++||+||++|.+ |++.+++.|++ +.+.+.+|+|
T Consensus 214 ~vi~~~~~~~------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi 287 (519)
T TIGR02339 214 IVVDKEPVHP------GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVF 287 (519)
T ss_pred EEEecCCCCC------CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4688999888 46667899999999998 89999999986 4566889999
Q ss_pred EecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC---
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM--- 131 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk--- 131 (152)
++++|+++|+..|. .+|.+. |+-. ++..|+|||.+|||++++. +++++.+.||+|+++.+++
T Consensus 288 ~~~~I~~~al~~L~---~~gI~~--v~~v--------~~~~L~rIa~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~ig~ 352 (519)
T TIGR02339 288 CQKGIDDLAQHYLA---KAGILA--VRRV--------KKSDIEKLARATGAKIVSS--IKEITESDLGYAGLVEERKVGD 352 (519)
T ss_pred ECCCccHHHHHHHH---HCCCEE--EecC--------CHHHHHHHHHHhCCEEeCc--hhhCChhhccCCceEEEEEECC
Confidence 99999999999885 444433 4433 3667999999999999986 4566778899999999998
Q ss_pred CceEEEcCCCC
Q 031820 132 TRWLSLVGLVA 142 (152)
Q Consensus 132 d~T~il~g~g~ 142 (152)
+.++++.|.+.
T Consensus 353 ~~~~~~~~~~~ 363 (519)
T TIGR02339 353 DKMTFVEGCKN 363 (519)
T ss_pred eEEEEEEcCCC
Confidence 88888877654
No 22
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.41 E-value=1.2e-13 Score=124.81 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=93.4
Q ss_pred cccccc-cCCC-CceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccceEE-Ee
Q 031820 7 PVSSYF-TNQK-AKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IA 81 (152)
Q Consensus 7 ylSpyf-td~~-~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-Vk 81 (152)
|.+||| ++++ ++++++++|+.+....+.+ .+.+.+++ +.+.+.||+|.+++|++.++..|- ..+++ ||
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e-~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~------~~~I~av~ 306 (531)
T TIGR02346 234 FSCPLDTATTETKGTVLIHNAEELLNYSKGE-ENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCE------KYNIMVLK 306 (531)
T ss_pred EecCcCCCcccCceEEEECCHHHHHHHHHHH-HHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHH------HCCcEEEe
Confidence 999999 8888 8999999999999887765 68899999 888999999999999997776332 56778 99
Q ss_pred cCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC
Q 031820 82 KPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (152)
Q Consensus 82 aP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk 131 (152)
.| ++++ |+|||.+|||++++. ++++++++||+|+++.+++
T Consensus 307 ~~---~~~~-----l~~Ia~~tGa~ii~~--l~~~~~~~LG~a~~v~~~~ 346 (531)
T TIGR02346 307 IP---SKFE-----LRRLCKTVGATPLAR--LGAPQPEEIGYVDSVYVSE 346 (531)
T ss_pred cC---CHHH-----HHHHHHHHCCEEecc--cccCCHhHccccceEEEEE
Confidence 99 8886 679999999999976 5678888999999998876
No 23
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.40 E-value=1.1e-13 Score=124.99 Aligned_cols=127 Identities=19% Similarity=0.150 Sum_probs=105.2
Q ss_pred ccCCccccccc-cCCC---CceEEeeCceEEEecccc--------------cchHHHHHHH--HhhcC---CCeEEEecc
Q 031820 2 KLKWRPVSSYF-TNQK---AKDCVLENPFLLILENMI--------------VSKNIVEQAI--AQADS---RPLLIVAED 58 (152)
Q Consensus 2 ~fdrGylSpyf-td~~---~~~~ele~p~ILltd~kI--------------s~~~~ilp~L--~~~~~---rpLlIiAed 58 (152)
+|++||++||| ++.+ .|..+++||+||++|.++ ++.+++ |.+ ..+.. +|+.|++.+
T Consensus 210 si~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~-~~l~~~E~~~i~~~v~~Ii~~g 288 (533)
T PTZ00212 210 TLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKV-AEIEAAEKEKMKNKVDKILAHG 288 (533)
T ss_pred CccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999 8887 889999999999999997 788885 555 44443 699999999
Q ss_pred cccchhhhhhcccccccce---EE-Ee-cCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE---Ee
Q 031820 59 VEDKLIGSLILGKTCLQNK---VS-IA-KPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---YQ 130 (152)
Q Consensus 59 v~~eaL~tLv~Nklrg~l~---v~-Vk-aP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---vt 130 (152)
++-.+....|.|...+.|+ ++ || .| .+ -|+|||.+|||++++. +++++.++||+|+++. +.
T Consensus 289 v~vvv~~~~I~d~a~~~L~~~~I~avr~v~---~~------~l~rIa~~tGa~iis~--l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 289 CNVFINRQLIYNYPEQLFAEAGIMAIEHAD---FD------GMERLAAALGAEIVST--FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred CeEEEeCCCccHHHHHHHHHCCCEEEecCC---HH------HHHHHHHHhCCEEeec--CCCCCHHHccCCceEEEEEEC
Confidence 9888888888888898888 77 88 56 32 4779999999999986 6677788999999998 77
Q ss_pred CCceEEEcCC
Q 031820 131 MTRWLSLVGL 140 (152)
Q Consensus 131 kd~T~il~g~ 140 (152)
.++++++.|.
T Consensus 358 ~~~~~~~~~~ 367 (533)
T PTZ00212 358 EDKLIRFSGC 367 (533)
T ss_pred CeEEEEEEcc
Confidence 7777777553
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.35 E-value=1.3e-13 Score=124.41 Aligned_cols=122 Identities=13% Similarity=0.177 Sum_probs=91.2
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccccchHHHH------------------------HHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVE------------------------QAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~il------------------------p~L--~~~~~rpLlI 54 (152)
|.||+||.|| +|..+++||+||++|.+++..++.+ +.+ +.+.+..|+|
T Consensus 210 i~i~~~~~~~------~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi 283 (536)
T TIGR02340 210 YALNCTRASQ------QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVL 283 (536)
T ss_pred EEEecccCCC------CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4688898887 5777899999999999998776332 323 3345666666
Q ss_pred EecccccchhhhhhcccccccceEEEecCCCCCchhhH--hhhhhhhhhhhcCeEeec-c---ccCCCCCCCCceeeEEE
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKET--KAIMDDLAILTGGQVLNG-A---TNVSFMPLMLGSCKELL 128 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~r--k~~L~DiAilTGg~vi~~-~---~l~~~~~~~LG~a~~v~ 128 (152)
....|++.++..| +++| .++.+| +..|+|||.+|||+++++ . ..++++..+||+|+++.
T Consensus 284 ~~k~I~~~a~~~L------------~k~~---I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 284 TTGGIDDMCLKYF------------VEAG---AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred eCCCCcHHHHHHH------------HHCC---cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 6666666666654 4555 555555 788999999999999998 2 34567788899999999
Q ss_pred ---EeCCceEEEcCCCCh
Q 031820 129 ---YQMTRWLSLVGLVAS 143 (152)
Q Consensus 129 ---vtkd~T~il~g~g~~ 143 (152)
++++.++++.|.+++
T Consensus 349 ~~~ig~~~~~~i~~~~~~ 366 (536)
T TIGR02340 349 EERIADDECILIKGTKGR 366 (536)
T ss_pred EEEECCeEEEEEEcCCCC
Confidence 889999998776543
No 25
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.33 E-value=5.2e-12 Score=113.78 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=95.1
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccccchH-----------------------H-HHHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKN-----------------------I-VEQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~-----------------------~-ilp~L--~~~~~rpLlI 54 (152)
|.||+||.|| +|...++||+||++|.+++..+ + +.+.+ +.+.+.||+|
T Consensus 206 ivi~~~~~~~------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi 279 (527)
T cd03335 206 YALNCTRASQ------GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVL 279 (527)
T ss_pred EEEecccCCC------CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3578888777 4666899999999999997621 1 12444 5688999999
Q ss_pred EecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec-c---ccCCCCCCCCceeeEEE-
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-A---TNVSFMPLMLGSCKELL- 128 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~---~l~~~~~~~LG~a~~v~- 128 (152)
++++|+++|+..|.-|. +. ++-. ++..|+|||.+|||+++++ . ..+++++++||+|+++.
T Consensus 280 ~~k~I~d~al~~L~~~~------I~~v~~v--------~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~ 345 (527)
T cd03335 280 TTGGIDDMCLKYFVEAG------AMAVRRV--------KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQ 345 (527)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC--------CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEE
Confidence 99999999999998862 33 4433 4667999999999999998 2 33566777999999999
Q ss_pred --EeCCceEEEcCCCC
Q 031820 129 --YQMTRWLSLVGLVA 142 (152)
Q Consensus 129 --vtkd~T~il~g~g~ 142 (152)
++.+.++++.|.++
T Consensus 346 ~~ig~~~~~~i~g~~~ 361 (527)
T cd03335 346 ERIGDDELILIKGTKK 361 (527)
T ss_pred EEECCeEEEEEEcCCC
Confidence 88888888877554
No 26
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.31 E-value=1.9e-13 Score=123.63 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=89.7
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccccchH-------------------------------HHHHHH--Hhh
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKN-------------------------------IVEQAI--AQA 47 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~-------------------------------~ilp~L--~~~ 47 (152)
|.||+||.|||| ..+++||+||++|.+++..+ .|+++. +++
T Consensus 210 iv~~~~~~~~~~------~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 210 LVLDHGARHPDM------PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEEecCcCCCCC------ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 468999999998 22789999999999997553 222222 010
Q ss_pred c--CCC-eEEEecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCcee
Q 031820 48 D--SRP-LLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSC 124 (152)
Q Consensus 48 ~--~rp-LlIiAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a 124 (152)
. +.+ |+|....|++.++..|.-+++-+ ++-. .+..|+|||.+|||++++. +++++.++||+|
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~-----i~rv--------~~~~le~ia~~tGa~~i~~--l~~~~~~~LG~~ 348 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKEGIMA-----LRRA--------KRRNMERLTLACGGEALNS--VEDLTPECLGWA 348 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHCCceE-----EccC--------CHHHHHHHHHHhCCEEecc--cccCCccccccc
Confidence 0 234 77778999999998776643322 4433 1457999999999999975 677888999999
Q ss_pred eEE---EEeCCceEEEcCCCCh
Q 031820 125 KEL---LYQMTRWLSLVGLVAS 143 (152)
Q Consensus 125 ~~v---~vtkd~T~il~g~g~~ 143 (152)
++| .++.++++++.|.+++
T Consensus 349 ~~v~~~~ig~~~~~~i~~~~~~ 370 (531)
T TIGR02347 349 GLVYETSIGEEKYTFIEEVKNP 370 (531)
T ss_pred eEEEEEEECCeEEEEEEcCCCC
Confidence 999 9989999888876543
No 27
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.28 E-value=1.1e-11 Score=109.63 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=84.8
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccccchHHHHHHHHhhcCCCeEEEecc-cccchhhhhhcccccccceEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAED-VEDKLIGSLILGKTCLQNKVS 79 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAed-v~~eaL~tLv~Nklrg~l~v~ 79 (152)
+.|++||.+||| ..+++||+||++|.+++. ||||++ |+++|+..|.. .+++
T Consensus 201 i~~~~~~~~~~m------~~~~~n~~Ili~~~~Le~----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 201 MVFDKGYLSPYM------PKRLENAKILLLDCKLEY----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EEEecCCCCCCC------ceeecCceEEEEecCcce----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 468999999997 668999999999999987 899998 99999998876 5556
Q ss_pred -EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC----CceEEEcC
Q 031820 80 -IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM----TRWLSLVG 139 (152)
Q Consensus 80 -VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk----d~T~il~g 139 (152)
|+.. ++..|+|||.+|||++++. +++++.++||+|+++.+++ .-|.+.++
T Consensus 253 ~v~~~--------~~~~L~~Ia~~tGa~ii~~--~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~ 307 (464)
T cd00309 253 AVRRV--------RKEDLERIAKATGATIVSR--LEDLTPEDLGTAGLVEETKIGDEKYTFIEGC 307 (464)
T ss_pred EEEeC--------CHHHHHHHHHHhCCEEecc--cccCCcccCccccEEEEEEEcCeeEEEEEec
Confidence 7776 3678999999999999987 5667788999999999988 55555543
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.28 E-value=2.1e-12 Score=116.14 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=98.9
Q ss_pred ccCCccccccc-cCCCC---ceEEeeCceEEEeccccc--------------chHHHHHHH-HhhcC---CCeEEEeccc
Q 031820 2 KLKWRPVSSYF-TNQKA---KDCVLENPFLLILENMIV--------------SKNIVEQAI-AQADS---RPLLIVAEDV 59 (152)
Q Consensus 2 ~fdrGylSpyf-td~~~---~~~ele~p~ILltd~kIs--------------~~~~ilp~L-~~~~~---rpLlIiAedv 59 (152)
+++.+|++||| .+... |...++||+||++|.+++ +.+++.++. ..+.. +++.|++.++
T Consensus 198 s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv 277 (517)
T cd03336 198 SLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGI 277 (517)
T ss_pred CccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999 76543 477899999999999776 678885544 44443 6999999999
Q ss_pred ccchhhhhhcccccc---cceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC
Q 031820 60 EDKLIGSLILGKTCL---QNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (152)
Q Consensus 60 ~~eaL~tLv~Nklrg---~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk 131 (152)
+-.+++..|.|...+ ..+++ |+.| ++.+ |+|||.+|||++++. +++++.++||+|+++....
T Consensus 278 ~~v~~~~~I~~~~~~~l~~~~I~av~~v---~~~~-----L~rIa~~tGa~ii~~--l~~~~~~~LG~~~~v~~~~ 343 (517)
T cd03336 278 NCFINRQLIYNYPEQLFADAGIMAIEHA---DFDG-----VERLALVTGGEIAST--FDHPELVKLGTCKLIEEIM 343 (517)
T ss_pred eEEEeCCCccHHHHHHHHHCCcEEEecC---CHHH-----HHHHHHHhCCEEecc--cCCCCcccccccceEEEEE
Confidence 999999999999998 44788 9999 7755 999999999999985 6677888999998776544
No 29
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.28 E-value=2.9e-12 Score=115.49 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=97.2
Q ss_pred ccCCccccccc-cCCC---CceEEeeCceEEEecccccchH-------------HHHHHH--HhhcCC---CeEEEeccc
Q 031820 2 KLKWRPVSSYF-TNQK---AKDCVLENPFLLILENMIVSKN-------------IVEQAI--AQADSR---PLLIVAEDV 59 (152)
Q Consensus 2 ~fdrGylSpyf-td~~---~~~~ele~p~ILltd~kIs~~~-------------~ilp~L--~~~~~r---pLlIiAedv 59 (152)
+++.||++||| .+.+ .|..+++||+||++|.+++..+ +.++.+ ..+... +..|++.++
T Consensus 199 s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~ 278 (519)
T TIGR02341 199 SLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNI 278 (519)
T ss_pred CcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999 8876 7888999999999999998532 135555 444433 889999999
Q ss_pred ccchhhhhhccc---ccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC
Q 031820 60 EDKLIGSLILGK---TCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (152)
Q Consensus 60 ~~eaL~tLv~Nk---lrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk 131 (152)
+..+++.+|.|+ ..+..+++ |+.| +++ .|+|||.+|||++++. +++++.++||+|+++....
T Consensus 279 ~~v~~~~~I~~~~~~~l~~~~I~~v~~~---~~~-----~l~~ia~~tGa~ii~~--~~~~~~~~lG~~~~v~~~~ 344 (519)
T TIGR02341 279 NCFINRQLIYNYPEQLFADAGVMAIEHA---DFE-----GIERLALVTGGEIVST--FDHPELVKLGSCDLIEEIM 344 (519)
T ss_pred cEEEECCcCCHHHHHHHHHCCcEEEecC---CHH-----HHHHHHHHhCCEEecc--cccCCccccccCceEEEEE
Confidence 999999999999 55566777 9999 765 4899999999999986 5677788999998776543
No 30
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.26 E-value=1.7e-11 Score=97.50 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=78.7
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccccchHHHHHHHHhhcCCCeEEEecc-cccchhhhhhcccccccceEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAED-VEDKLIGSLILGKTCLQNKVS 79 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAed-v~~eaL~tLv~Nklrg~l~v~ 79 (152)
+.|++||.+|+| ...++||+||+++.+++. +|+++. |+++|+..|.- .+++
T Consensus 65 v~~~~~~~~~~m------~~~~~n~~Ill~~~~le~----------------vii~~~~I~~~al~~l~~------~~I~ 116 (209)
T cd03333 65 VVFDKGYASPYM------PKRLENAKILLLDCPLEY----------------VVIAEKGIDDLALHYLAK------AGIM 116 (209)
T ss_pred EEEeccccCCCC------CeEcCCCcEEEEeCCeeE----------------EEEecCcccHHHHHHHHH------CCCE
Confidence 358899999987 568899999999999887 888888 99999998876 3334
Q ss_pred -EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeCC
Q 031820 80 -IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQMT 132 (152)
Q Consensus 80 -VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtkd 132 (152)
|+.. ++..|+|||.+|||++++. +++++.+.||+|+++.+.+.
T Consensus 117 ~v~~~--------~~~~l~~ia~~tga~ii~~--~~~~~~~~lG~~~~v~~~~~ 160 (209)
T cd03333 117 AVRRV--------KKEDLERIARATGATIVSS--LEDLTPEDLGTAELVEETKI 160 (209)
T ss_pred EEEeC--------CHHHHHHHHHHHCCEEecc--cccCChhhceeeeEEEEEEE
Confidence 6665 3457999999999999987 56677889999999999986
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.20 E-value=4.3e-11 Score=106.65 Aligned_cols=101 Identities=11% Similarity=0.065 Sum_probs=84.4
Q ss_pred cCCCCceEEeeCceEEEecccccchHHHHHHHHhhcCCCeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhh
Q 031820 13 TNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKE 91 (152)
Q Consensus 13 td~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~ 91 (152)
+++..|..+++||+|+++|.+++. +.||||++++|+++||.. +|+ .+++ ||.| +.
T Consensus 207 ~~~~~~~~~~~n~~Ili~~~~Le~------------g~~lvi~~~~I~d~al~~--l~~----~~I~av~~~---~~--- 262 (472)
T cd03341 207 REPEGSVKRVKKAKVAVFSCPFDI------------GVNVIVAGGSVGDLALHY--CNK----YGIMVIKIN---SK--- 262 (472)
T ss_pred cccCCCceeccCCcEEEEeccccC------------CCeEEEECCCCCHHHHHH--HHH----CCeEEEEeC---CH---
Confidence 345556689999999999999887 889999999999999997 443 6677 9999 63
Q ss_pred HhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC---CceEEEcCCC
Q 031820 92 TKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM---TRWLSLVGLV 141 (152)
Q Consensus 92 rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk---d~T~il~g~g 141 (152)
..|+|||.+|||+++++ +++++.++||+|+++.+++ +.++++.|.+
T Consensus 263 --~~Le~Ia~~tGa~ii~~--~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~ 311 (472)
T cd03341 263 --FELRRLCRTVGATPLPR--LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNK 311 (472)
T ss_pred --HHHHHHHHHhCCEEecc--cccCCHhHCCCceEEEEEEECCeeEEEEEccC
Confidence 34999999999999987 5567788999999999999 7777776654
No 32
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.12 E-value=4.6e-10 Score=101.01 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=89.5
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEeccc-------------ccchHH-----------HHHHH--HhhcCCCeE
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENM-------------IVSKNI-----------VEQAI--AQADSRPLL 53 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~k-------------Is~~~~-----------ilp~L--~~~~~rpLl 53 (152)
+.|++||.|||| +++.+ ++||+||++|.+ ++++.+ +.+.+ +.+.+-.++
T Consensus 210 iv~~k~~~~~~~~~~~~~----~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vv 285 (522)
T cd03340 210 VAFKKTFSYAGFEQQPKK----FKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVV 285 (522)
T ss_pred EEEecccCccccccCCcc----ccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 468999999999 87754 899999999988 445444 34444 556666677
Q ss_pred EEecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE---E-
Q 031820 54 IVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---Y- 129 (152)
Q Consensus 54 IiAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---v- 129 (152)
+.-..|++.++..|.-+.+ + ++.+.. +..|++||.+|||++++. +++++.++||+|+++. +
T Consensus 286 l~~~~i~d~a~~~l~~~~I---~-~~~~v~---------~~~l~rIa~~tGa~ii~~--l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 286 LSKLPIGDLATQYFADRDI---F-CAGRVP---------EEDLKRVAQATGGSIQTT--VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred EeCCCCcHHHHHHHHHCCc---E-EEEeCC---------HHHHHHHHHHHCCEEeec--cccCCccccccceEEEEEEEC
Confidence 7777788888777665533 2 222332 345899999999999987 5677788999999998 4
Q ss_pred ------------eCCceEEEcCCC
Q 031820 130 ------------QMTRWLSLVGLV 141 (152)
Q Consensus 130 ------------tkd~T~il~g~g 141 (152)
++..|++++|+.
T Consensus 351 ~~~~~~~~~~~~~~~~TIllrG~t 374 (522)
T cd03340 351 GERYNIFTGCPKAKTCTIILRGGA 374 (522)
T ss_pred CEEEEEEECCCCCceEEEEEECCC
Confidence 566688888864
No 33
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.07 E-value=3.3e-10 Score=99.02 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=95.0
Q ss_pred cCCccccccccCCCCceEEeeCceEEEecccccchHH-----------------------HHHHH--HhhcCCCeEEEec
Q 031820 3 LKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNI-----------------------VEQAI--AQADSRPLLIVAE 57 (152)
Q Consensus 3 fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~-----------------------ilp~L--~~~~~rpLlIiAe 57 (152)
|+++|.+| .|.-.++||.|++++..++..++ +.+++ +.+.+.+|+|+++
T Consensus 180 ~~~~~~~~------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~ 253 (485)
T PF00118_consen 180 LDKGFSSP------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQK 253 (485)
T ss_dssp ESSSBSST------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESS
T ss_pred eecccccc------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeec
Confidence 55666555 45556699999999999999888 99999 7788899999999
Q ss_pred ccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEE---EEeCCce
Q 031820 58 DVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEL---LYQMTRW 134 (152)
Q Consensus 58 dv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v---~vtkd~T 134 (152)
+|++.++..|..|++....+| ++..|++||.+|||++++.. ++++.+.||+|+++ .+..+++
T Consensus 254 ~i~~~~l~~l~~~~I~~i~~v-------------~~~~l~~i~~~tg~~ii~~~--~~l~~~~lG~~~~v~~~~i~~~~~ 318 (485)
T PF00118_consen 254 SIDDEALQYLNKNGILVIRRV-------------SKEDLERIARATGASIISSL--DDLSDEDLGFCKSVEEREIGNKKY 318 (485)
T ss_dssp EBTHHHHHHHHHCTHEEESSE-------------HHHHHHHHHHHHTSBEBSSC--GGSTGGGSEEEEEEEEEEETSSEE
T ss_pred ccccccchhhhhhhhhccccc-------------hHHHHHhhhcccCCcEeccc--ccccchhhhhhhhhhhcccccccc
Confidence 999999999988866543222 46679999999999999883 44555679999999 8889988
Q ss_pred EEEcC
Q 031820 135 LSLVG 139 (152)
Q Consensus 135 ~il~g 139 (152)
+++.+
T Consensus 319 ~~~~~ 323 (485)
T PF00118_consen 319 IFIEG 323 (485)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 88874
No 34
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.98 E-value=1.1e-09 Score=98.62 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=85.7
Q ss_pred CceEEeeCceEEEecccccc-------------hHHHHHHH-H-----------hhcCCCeEEEecccccchhhhhhccc
Q 031820 17 AKDCVLENPFLLILENMIVS-------------KNIVEQAI-A-----------QADSRPLLIVAEDVEDKLIGSLILGK 71 (152)
Q Consensus 17 ~~~~ele~p~ILltd~kIs~-------------~~~ilp~L-~-----------~~~~rpLlIiAedv~~eaL~tLv~Nk 71 (152)
+|..+++||.||++|.+++. .+++.|++ . ....+|.|||++.. ++.++.|.
T Consensus 224 ~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~----I~dla~~~ 299 (525)
T TIGR02344 224 KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKG----VSDLAQHY 299 (525)
T ss_pred CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC----ccHHHHHH
Confidence 78899999999999999976 37887775 1 13367999999744 44577788
Q ss_pred ccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCce-eeEEEEeC---CceEEEcCCCC
Q 031820 72 TCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS-CKELLYQM---TRWLSLVGLVA 142 (152)
Q Consensus 72 lrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~-a~~v~vtk---d~T~il~g~g~ 142 (152)
+++ .+++ ++ ..++..|+|||.+|||++++. +++++.++||+ |+.+.+.+ +.++++.|.++
T Consensus 300 l~~-~~I~av~--------~v~~~~LerIa~~tGa~ii~~--l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~ 364 (525)
T TIGR02344 300 LLK-ANISAIR--------RVRKTDNNRIARACGATIVNR--PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKD 364 (525)
T ss_pred HhH-CCceEEe--------cCCHHHHHHHHHHhCCeEecc--hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCC
Confidence 887 6676 44 456778999999999999986 56677789999 98888744 67777776544
No 35
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.87 E-value=4.1e-09 Score=94.21 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=78.8
Q ss_pred ccCCccccccccCCCCceEEeeCceEEEecccccchHHHHHHHHhhcCCCeEEEecccccchhhhhhcccccccceEE-E
Q 031820 2 KLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-I 80 (152)
Q Consensus 2 ~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-V 80 (152)
.|++|+.+| +|..+++||+||+.|.+++. |+|++++|+++|+..|.-| +++ |
T Consensus 215 vi~k~~~~~------~m~~~~~n~kIlll~~~Le~---------------lvi~~k~I~d~al~~L~~~------~I~~v 267 (480)
T cd03337 215 MLNKDVTHP------KMRRRIENPRIVLLDCPLEY---------------LVITEKGVSDLAQHYLVKA------GITAL 267 (480)
T ss_pred EEeccCCCC------CCCcEecCCCEEEEecCcce---------------EEEeCCCccHHHHHHHHHC------CcEEE
Confidence 355665443 67888999999999998775 9999999999999999887 445 6
Q ss_pred ecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEE----eCCceEEEcCCC
Q 031820 81 AKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY----QMTRWLSLVGLV 141 (152)
Q Consensus 81 kaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~v----tkd~T~il~g~g 141 (152)
+.. ++..|+|||.+|||+++++ +++++.++||+|.++.. .++.++++.|.+
T Consensus 268 ~~v--------~~~~L~rIa~~tGa~ii~~--~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~ 322 (480)
T cd03337 268 RRV--------RKTDNNRIARACGATIVNR--PEELTESDVGTGAGLFEVKKIGDEYFTFITECK 322 (480)
T ss_pred EeC--------CHHHHHHHHHHHCCEEecc--hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCC
Confidence 654 3556999999999999987 55667789999655544 335566665543
No 36
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=96.95 E-value=0.0059 Score=50.99 Aligned_cols=102 Identities=14% Similarity=0.256 Sum_probs=69.9
Q ss_pred CCceEEeeCceEEEecccccch------HHHHHH-----------H--HhhcCCCeEEEecccccchhhhhhcccccccc
Q 031820 16 KAKDCVLENPFLLILENMIVSK------NIVEQA-----------I--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQN 76 (152)
Q Consensus 16 ~~~~~ele~p~ILltd~kIs~~------~~ilp~-----------L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l 76 (152)
++|.-.++||.|++.+..++.. .++-.+ + +...|--+++.-..|++.|+.-|.-+ |.
T Consensus 78 ~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~---gI- 153 (261)
T cd03334 78 KRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA---GI- 153 (261)
T ss_pred ccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC---CC-
Confidence 3567788999999998777431 222222 2 45567677777888999888766543 32
Q ss_pred eEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeC
Q 031820 77 KVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (152)
Q Consensus 77 ~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtk 131 (152)
-+ |+-+ . +.-|+.||-.|||++++.+ .+..+.+.||+|+++.+.+
T Consensus 154 ~~-v~~v---~-----~~dl~rIa~~tGa~ii~~i-~~~~~~~~lG~~~~v~~~~ 198 (261)
T cd03334 154 TL-VLNV---K-----PSVLERISRCTGADIISSM-DDLLTSPKLGTCESFRVRT 198 (261)
T ss_pred EE-EEec---C-----HHHHHHHHHHhCCEEecCh-hhhcCcccCcCcceEEEEE
Confidence 22 4555 2 2358899999999999872 1346677899998887755
No 37
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.14 Score=45.53 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=57.6
Q ss_pred HhhcCCCeEEEecccccchhhhhhcccccccceEE--EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCc
Q 031820 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS--IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLG 122 (152)
Q Consensus 45 ~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~--VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG 122 (152)
+..+|.-|.|--=.++.||=..|..|.+.. + |--| -+|=|||.|||+.+.+ +++.+.+.||
T Consensus 151 vK~~ga~l~icqwgfddeanhll~~n~lpa----vrwVGGp-----------EiEliAiaT~grIVpr--F~eL~~~kLG 213 (400)
T KOG0357|consen 151 IKETGANLAICQWGFDDEANHLLLQNNLPA----VRWVGGP-----------EIELIAIATGGRIVPR--FSELTAEKLG 213 (400)
T ss_pred HHhhCCcEEEEecccCchhhhHHhhcCCCc----eeecCCc-----------ceEEEEeecCCeeecc--HhhhCHhhcc
Confidence 677776666666789999988888876654 4 6666 2788999999999987 4566778888
Q ss_pred eeeEEE-----EeCCceEEEcCCCC
Q 031820 123 SCKELL-----YQMTRWLSLVGLVA 142 (152)
Q Consensus 123 ~a~~v~-----vtkd~T~il~g~g~ 142 (152)
+|..|. -|||+-+++.-..+
T Consensus 214 ~aglVrE~sfgttkdkmlviEqc~n 238 (400)
T KOG0357|consen 214 FAGLVREISFGTTKDKMLVIEQCKN 238 (400)
T ss_pred ccceEEEEecccccceEEEEEecCC
Confidence 877654 25555554444333
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=78.45 E-value=1.6 Score=40.46 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=54.6
Q ss_pred hhcCCCeEEEecccccchhhhhhcccccccceEEEecCCCCCchhh--HhhhhhhhhhhhcCeEeec-ccc---CCCCCC
Q 031820 46 QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKE--TKAIMDDLAILTGGQVLNG-ATN---VSFMPL 119 (152)
Q Consensus 46 ~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~--rk~~L~DiAilTGg~vi~~-~~l---~~~~~~ 119 (152)
..++..++....-|++-.+.-++--. .++=+ +|+.|+-||=.||+++++. ..+ |.+...
T Consensus 282 l~~ganvVLtt~gIddmc~K~~veag---------------amAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~ 346 (545)
T KOG0360|consen 282 LATGANVVLTTGGIDDMCLKYFVEAG---------------AMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPA 346 (545)
T ss_pred HhcCCcEEEEcCCccHHHHHHHHHcc---------------hhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChh
Confidence 34566677777766665555443321 22223 4688999999999999999 333 567778
Q ss_pred CCceeeEEE---EeCCceEEEcCCC
Q 031820 120 MLGSCKELL---YQMTRWLSLVGLV 141 (152)
Q Consensus 120 ~LG~a~~v~---vtkd~T~il~g~g 141 (152)
.||+|++|. +..|+.+++.|..
T Consensus 347 ~lG~a~evvqeri~dde~ilikg~k 371 (545)
T KOG0360|consen 347 SLGSADEVVQERIGDDELILIKGTK 371 (545)
T ss_pred hccchhHHHHHhcccceeEEeccCc
Confidence 999999875 4567766666543
No 39
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=78.09 E-value=2.1 Score=34.36 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=39.9
Q ss_pred eCceEEEecccccchHHHHHHHHhhcCCCeEEEecccc-cchhhhhhcccccccceEEEecC
Q 031820 23 ENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVE-DKLIGSLILGKTCLQNKVSIAKP 83 (152)
Q Consensus 23 e~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~-~eaL~tLv~Nklrg~l~v~VkaP 83 (152)
-+|+..-+++.-+-+-+++-.++.+++|||+|+..... +|.+-..+-=.-+..++++-.+|
T Consensus 10 fd~~~I~~~K~at~~p~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~ 71 (170)
T COG1880 10 FDPTNIATSKTATAVPEVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATAS 71 (170)
T ss_pred cCcccccccchhccccHHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecch
Confidence 34555555554443445554448999999999999987 66666555445555677765555
No 40
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=54.10 E-value=36 Score=29.61 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=45.7
Q ss_pred eCceEEEecccccc-------hHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce---EE-EecCCCCCch
Q 031820 23 ENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDYE 89 (152)
Q Consensus 23 e~p~ILltd~kIs~-------~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~---v~-VkaP~~~gfG 89 (152)
.++-+|+-|. |.. -++++.++ ..+.+++++| +-+-.++.|..+ ..+++..+. ++ +..| .+
T Consensus 198 ~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~p~~l~~l-~~~l~SRl~~g~~v~i~~p---d~- 270 (405)
T TIGR00362 198 RSVDLLLIDD-IQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRPPKELPGL-EERLRSRFEWGLVVDIEPP---DL- 270 (405)
T ss_pred HhCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCCHHHHhhh-hhhhhhhccCCeEEEeCCC---CH-
Confidence 3455666665 432 23577777 4556777655 556667777654 445555553 34 8999 66
Q ss_pred hhHhhhhhhhhhhhc
Q 031820 90 KETKAIMDDLAILTG 104 (152)
Q Consensus 90 ~~rk~~L~DiAilTG 104 (152)
+.|.++|+..+-.-|
T Consensus 271 ~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 271 ETRLAILQKKAEEEG 285 (405)
T ss_pred HHHHHHHHHHHHHcC
Confidence 457788888876543
No 41
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=52.26 E-value=22 Score=27.46 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.0
Q ss_pred eEEEecccccchHHHHHHHHhhcCCCeEEEe
Q 031820 26 FLLILENMIVSKNIVEQAIAQADSRPLLIVA 56 (152)
Q Consensus 26 ~ILltd~kIs~~~~ilp~L~~~~~rpLlIiA 56 (152)
++++||..|++.++-.-+++..++-||-||.
T Consensus 112 LlIlTDG~i~D~~~T~~aIv~AS~~PlSIIi 142 (146)
T PF07002_consen 112 LLILTDGQITDMEETIDAIVEASKLPLSIII 142 (146)
T ss_pred EEEecccccccHHHHHHHHHHHccCCeEEEE
Confidence 5688999999999888888767778998875
No 42
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=52.01 E-value=12 Score=28.07 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=23.6
Q ss_pred CCeEEEecccccchhhhhhccccc-ccceEE-EecC
Q 031820 50 RPLLIVAEDVEDKLIGSLILGKTC-LQNKVS-IAKP 83 (152)
Q Consensus 50 rpLlIiAedv~~eaL~tLv~Nklr-g~l~v~-VkaP 83 (152)
.-|+|||+|++++-+...+-.... -.++++ |...
T Consensus 44 a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk 79 (116)
T COG1358 44 AKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSK 79 (116)
T ss_pred CcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 689999999997777766655544 445665 4444
No 43
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=47.60 E-value=39 Score=23.45 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=39.0
Q ss_pred hhcCCCeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec
Q 031820 46 QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG 110 (152)
Q Consensus 46 ~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~ 110 (152)
+..-+|.+.|+.+==-+.+..-+-..++. =.++ ||... ...+.++++.+.||-.||+.++..
T Consensus 13 a~~l~p~v~IGk~Glt~~vi~~i~~~l~~-~eLvKVk~~~--~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 13 AHHLKPVVQIGKNGLTDGVIEEIDDALEK-HELVKVKVLG--NCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HTTC--SEEE-TTSS-HHHHHHHHHHHHH-HSEEEEEETT----HHHHHHHHHHHHHHHTEEEEEE
T ss_pred hcCCCCeEEECCCCCCHHHHHHHHHHHHh-CCeeEEEEcc--CCHHHHHHHHHHHHHHhCCEEEEE
Confidence 34447999988765444444444444443 3456 78772 367889999999999999999865
No 44
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=46.38 E-value=36 Score=26.80 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=37.5
Q ss_pred CceEEEecccccchHHHHHHHHhhcCCCeEEEeccccc----chhhh-hhcccccccceEE----EecCCCCCchhhHhh
Q 031820 24 NPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED----KLIGS-LILGKTCLQNKVS----IAKPHEDDYEKETKA 94 (152)
Q Consensus 24 ~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~----eaL~t-Lv~Nklrg~l~v~----VkaP~~~gfG~~rk~ 94 (152)
|.-+.++..+++.-..+--.++.+.+||+++| +.+. +.+.. |.-|+++ +|+|+ =++| |-+..-++
T Consensus 65 DgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i--~~~~~~~~~~v~~wl~~~~i~-vLNVAGPReS~~P---gI~~~~~~ 138 (145)
T PF12694_consen 65 DGTLIFTRGELTGGTALTVEFARKHGKPCLHI--DLSIPEAAAAVAEWLREHNIR-VLNVAGPRESKAP---GIYRQVRA 138 (145)
T ss_dssp SEEEEEESSS--HHHHHHHHHHHHTT--EEEE--TS-HHHHHHHHHHHHHHTT---EEEEE---TTT-T---THHHHHHH
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHhCCCEEEE--ecCcccHHHHHHHHHHHCCce-EEEeccCcccCCC---CHHHHHHH
Confidence 44556666666655444333388999999999 3332 22233 3344444 68888 6777 88777777
Q ss_pred hhhh
Q 031820 95 IMDD 98 (152)
Q Consensus 95 ~L~D 98 (152)
.|+.
T Consensus 139 ~L~~ 142 (145)
T PF12694_consen 139 FLEA 142 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=45.30 E-value=37 Score=27.29 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=48.1
Q ss_pred EeeCceEEEecccccch-------HHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce---EE-EecCCCCC
Q 031820 21 VLENPFLLILENMIVSK-------NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDD 87 (152)
Q Consensus 21 ele~p~ILltd~kIs~~-------~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~---v~-VkaP~~~g 87 (152)
.+.++-+|+-|. |..+ +.+..++ ..+.+++++|++-+..++.|.. ....++..+. ++ ++.| .
T Consensus 88 ~~~~~dlLilDD-i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~-~~~~L~sRl~~g~~~~l~~p---d 162 (229)
T PRK06893 88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI-KLPDLASRLTWGEIYQLNDL---T 162 (229)
T ss_pred hcccCCEEEEeC-hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc-cchhHHHHHhcCCeeeCCCC---C
Confidence 455677788776 4432 2455656 4555778889999998988873 2344444443 56 9999 5
Q ss_pred chhhHhhhhhhhhh
Q 031820 88 YEKETKAIMDDLAI 101 (152)
Q Consensus 88 fG~~rk~~L~DiAi 101 (152)
. +.|.++|+-.|.
T Consensus 163 ~-e~~~~iL~~~a~ 175 (229)
T PRK06893 163 D-EQKIIVLQRNAY 175 (229)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 346667776655
No 46
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=44.27 E-value=24 Score=32.77 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=34.5
Q ss_pred hhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE---EeCCceEEEcCCCC
Q 031820 94 AIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---YQMTRWLSLVGLVA 142 (152)
Q Consensus 94 ~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---vtkd~T~il~g~g~ 142 (152)
..||.+-..|||..+.+ .++.+++.||-|..|- +-.+.+|++.+..+
T Consensus 311 RNmERL~lacGG~a~ns--vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~ 360 (520)
T KOG0359|consen 311 RNMERLVLACGGEAVNS--VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN 360 (520)
T ss_pred hhHHHHHHhhccceecc--cccCChhhccccceeEEeeccceeeEeeecCCC
Confidence 45899999999998865 6788999999998774 34455555544443
No 47
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=39.79 E-value=39 Score=28.50 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=25.9
Q ss_pred eEEEecccccchHHHHHHHHhhcCCCeEEEeccccc
Q 031820 26 FLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED 61 (152)
Q Consensus 26 ~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~ 61 (152)
++++||..|++.++..-+++..++.||-||-=-|..
T Consensus 160 LLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd 195 (254)
T cd01459 160 LLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGD 195 (254)
T ss_pred EEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 456778888888888887766667788777655533
No 48
>PRK06620 hypothetical protein; Validated
Probab=37.31 E-value=47 Score=26.71 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=43.0
Q ss_pred CceEEEecccccchHH-HHHHH---HhhcCCCeEEEecccccchhhhhhcccccccce---EE-EecCCCCCchhhHhhh
Q 031820 24 NPFLLILENMIVSKNI-VEQAI---AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDYEKETKAI 95 (152)
Q Consensus 24 ~p~ILltd~kIs~~~~-ilp~L---~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~---v~-VkaP~~~gfG~~rk~~ 95 (152)
+.-+|+.|. |...++ .+.-+ +.+.|+++| |+-+-.+.-+. + +.++-.+. ++ +++| ...+ |+.+
T Consensus 85 ~~d~lliDd-i~~~~~~~lf~l~N~~~e~g~~il-its~~~p~~l~-l--~~L~SRl~~gl~~~l~~p---d~~~-~~~~ 155 (214)
T PRK06620 85 KYNAFIIED-IENWQEPALLHIFNIINEKQKYLL-LTSSDKSRNFT-L--PDLSSRIKSVLSILLNSP---DDEL-IKIL 155 (214)
T ss_pred cCCEEEEec-cccchHHHHHHHHHHHHhcCCEEE-EEcCCCccccc-h--HHHHHHHhCCceEeeCCC---CHHH-HHHH
Confidence 344666675 666653 33344 567777654 55566666554 3 77777777 77 9999 7655 5667
Q ss_pred hhhhhh
Q 031820 96 MDDLAI 101 (152)
Q Consensus 96 L~DiAi 101 (152)
++-.+-
T Consensus 156 l~k~~~ 161 (214)
T PRK06620 156 IFKHFS 161 (214)
T ss_pred HHHHHH
Confidence 666554
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.45 E-value=30 Score=24.61 Aligned_cols=34 Identities=29% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCCeEEEecccccchhhhhhcccccccceEEEecC
Q 031820 49 SRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKP 83 (152)
Q Consensus 49 ~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~VkaP 83 (152)
..-+++||+|+++.....|..=--...++++ ..|
T Consensus 29 ~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v-~V~ 62 (84)
T PRK13600 29 QVTSLIIAEDVEVYLMTRVLSQINQKNIPVS-FFK 62 (84)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EEC
Confidence 3589999999999988766554444556664 445
No 50
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=36.16 E-value=60 Score=34.27 Aligned_cols=98 Identities=22% Similarity=0.296 Sum_probs=65.0
Q ss_pred CCceEEeeCceEEEec---------ccccchHHHHH----HH---H--hhcCC-CeEEEecccccchhhhhhcccccccc
Q 031820 16 KAKDCVLENPFLLILE---------NMIVSKNIVEQ----AI---A--QADSR-PLLIVAEDVEDKLIGSLILGKTCLQN 76 (152)
Q Consensus 16 ~~~~~ele~p~ILltd---------~kIs~~~~ilp----~L---~--~~~~r-pLlIiAedv~~eaL~tLv~Nklrg~l 76 (152)
++|.-++++|-||+.- .+++++++++. .| + ..+.| -+|.+-..|++-|...|. -+|..
T Consensus 392 k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~---~k~I~ 468 (1598)
T KOG0230|consen 392 KRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLL---DKGIS 468 (1598)
T ss_pred hhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhh---ccCeE
Confidence 5688889999999864 34555544331 12 1 23345 466677788888877663 35655
Q ss_pred eEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEE
Q 031820 77 KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY 129 (152)
Q Consensus 77 ~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~v 129 (152)
-|+ ||-+ .|+-||..||+..+..+. .++..-||-|..-.+
T Consensus 469 lvlnvK~s-----------~leRIsR~tga~I~~siD--slt~~klg~C~~F~v 509 (1598)
T KOG0230|consen 469 LVLNVKRS-----------LLERISRCTGADIVPSVD--SLTSQKLGYCELFRV 509 (1598)
T ss_pred EEEeccHH-----------HHHHHHHHhcCceecchh--hhhccccCCCccHhh
Confidence 555 8877 799999999999886632 255666777765444
No 51
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=36.15 E-value=47 Score=28.65 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=39.8
Q ss_pred cccccccCCCCceEEeeCceEEEeccc-ccchHHHHHHH---HhhcC-CCeEEEeccc
Q 031820 7 PVSSYFTNQKAKDCVLENPFLLILENM-IVSKNIVEQAI---AQADS-RPLLIVAEDV 59 (152)
Q Consensus 7 ylSpyftd~~~~~~ele~p~ILltd~k-Is~~~~ilp~L---~~~~~-rpLlIiAedv 59 (152)
|+.|||.|+.=.++. ..|.++|.+-. |.++++++..+ +.+.| ..+-|||..-
T Consensus 143 ~l~~~F~D~rYikVd-GKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 143 YLLPYFKDPRYIKVD-GKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred HHHHHhCCCCceeEC-CEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 788999887777776 68999999875 45677777777 77777 4588888764
No 52
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=35.01 E-value=75 Score=28.22 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=45.4
Q ss_pred eCceEEEecccccc-------hHHHHHHH--HhhcCCCeEEEecccccchhhhh---hcccccccceEE-EecCCCCCch
Q 031820 23 ENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVS-IAKPHEDDYE 89 (152)
Q Consensus 23 e~p~ILltd~kIs~-------~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tL---v~Nklrg~l~v~-VkaP~~~gfG 89 (152)
.++-+|+-|. |.. .++++.++ ..+.+++++|.+ +-.++.|..+ +..|+.++ .++ ++.| .+
T Consensus 210 ~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits-~~~p~~l~~l~~~l~SRl~~g-l~v~i~~p---d~- 282 (450)
T PRK00149 210 RSVDVLLIDD-IQFLAGKERTQEEFFHTFNALHEAGKQIVLTS-DRPPKELPGLEERLRSRFEWG-LTVDIEPP---DL- 282 (450)
T ss_pred hcCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEEC-CCCHHHHHHHHHHHHhHhcCC-eeEEecCC---CH-
Confidence 3555777775 422 24677776 556677765554 5566665542 33444443 345 9999 66
Q ss_pred hhHhhhhhhhhhhhc
Q 031820 90 KETKAIMDDLAILTG 104 (152)
Q Consensus 90 ~~rk~~L~DiAilTG 104 (152)
+.|.++|+..+---|
T Consensus 283 ~~r~~il~~~~~~~~ 297 (450)
T PRK00149 283 ETRIAILKKKAEEEG 297 (450)
T ss_pred HHHHHHHHHHHHHcC
Confidence 567788888776443
No 53
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=34.81 E-value=22 Score=29.56 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=32.0
Q ss_pred hhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEe
Q 031820 64 IGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVL 108 (152)
Q Consensus 64 L~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi 108 (152)
|+.+.+|+.-|...=+ |-.- +|=.+|++.|..+|.-.--+|.
T Consensus 119 L~n~~l~~~~g~~~~v~ldv~---~yRerR~e~L~~LA~~~A~rV~ 161 (208)
T COG1847 119 LANLYLNKIGGKFKRVTLDVG---DYRERRKETLIKLAERAAERVL 161 (208)
T ss_pred HHHHHhhhhcCcceEEEEEhh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789988875555 9999 9999999999999975444444
No 54
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=34.66 E-value=1e+02 Score=27.65 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=43.8
Q ss_pred CceEEEecccccc------h-HHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce---EE-EecCCCCCchh
Q 031820 24 NPFLLILENMIVS------K-NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDYEK 90 (152)
Q Consensus 24 ~p~ILltd~kIs~------~-~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~---v~-VkaP~~~gfG~ 90 (152)
+|-+|+.|. +.. . ++++-++ ..+.+++++|.+ |-.++-|..+ ..+++..+. ++ +.+| .+ +
T Consensus 194 ~~dvLlIDD-i~~l~~~~~~q~elf~~~n~l~~~~k~iIits-d~~p~~l~~l-~~rL~SR~~~gl~v~i~~p---d~-e 266 (440)
T PRK14088 194 KVDVLLIDD-VQFLIGKTGVQTELFHTFNELHDSGKQIVICS-DREPQKLSEF-QDRLVSRFQMGLVAKLEPP---DE-E 266 (440)
T ss_pred cCCEEEEec-hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC-CCCHHHHHHH-HHHHhhHHhcCceEeeCCC---CH-H
Confidence 466777776 322 1 3566666 455566655554 5666666654 334443333 56 9999 66 4
Q ss_pred hHhhhhhhhhhhhc
Q 031820 91 ETKAIMDDLAILTG 104 (152)
Q Consensus 91 ~rk~~L~DiAilTG 104 (152)
.|.++|+-.+-.-|
T Consensus 267 ~r~~IL~~~~~~~~ 280 (440)
T PRK14088 267 TRKKIARKMLEIEH 280 (440)
T ss_pred HHHHHHHHHHHhcC
Confidence 67778887765433
No 55
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=33.91 E-value=1.6e+02 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=15.3
Q ss_pred hhhhhhhhhhhcCeEeec
Q 031820 93 KAIMDDLAILTGGQVLNG 110 (152)
Q Consensus 93 k~~L~DiAilTGg~vi~~ 110 (152)
..+|++||-.|||+++.-
T Consensus 142 ~~~l~~ia~~~gG~~~~~ 159 (171)
T cd01461 142 TYLLERLAREGRGIARRI 159 (171)
T ss_pred HHHHHHHHHcCCCeEEEe
Confidence 468999999999997754
No 56
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=32.60 E-value=1.8e+02 Score=23.43 Aligned_cols=128 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred ccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH---HhhcCCCeEEEeccc----------ccchhhhhhccc
Q 031820 6 RPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI---AQADSRPLLIVAEDV----------EDKLIGSLILGK 71 (152)
Q Consensus 6 GylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L---~~~~~rpLlIiAedv----------~~eaL~tLv~Nk 71 (152)
++-+||. ....++.-.-....+-+++. + +.++--| +.+.+.|+=||..-- .+....-+.+.|
T Consensus 81 ~~~~~~~~~t~k~~k~~~~~k~~~~~~~-~---~~l~~~v~~i~~~~~~~vEiIgKrk~~~~~~~~~~~~~~~~kv~~~H 156 (245)
T PF01577_consen 81 SFKTPFWKRTTKKMKKKKKPKKVKMSDT-F---DNLIRQVLKIAKKKGKPVEIIGKRKKRTRARYKRRGGKRYLKVETKH 156 (245)
T ss_pred ccCCCCccccccccccccCCcccccchh-H---HHHHHHHHHHHHhcCCeEEEEecCCceEEEEEEEECCEEEEEEECCc
Confidence 3456644 44444444444344444443 3 3444444 667788999998754 222333334444
Q ss_pred ccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCC-ceeeEEEEeC---------CceEEEcCC
Q 031820 72 TCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLML-GSCKELLYQM---------TRWLSLVGL 140 (152)
Q Consensus 72 lrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~L-G~a~~v~vtk---------d~T~il~g~ 140 (152)
.+|..+-. +..| .+-..++.-+|-.+....... ...+ |...=|.-.. ++..|+.|.
T Consensus 157 e~G~~~r~Dl~~~------~~~~~i~~~~a~~~~~~~~~~-------~~~~~G~SG~vl~~~~~~~~~~~~~~~FIVRGr 223 (245)
T PF01577_consen 157 ERGKRKRRDLNID------EFTESILRLLAKKTYRGRIVD-------DIKIKGDSGLVLPRRKLIGFGRTRDDFFIVRGR 223 (245)
T ss_pred cCCCcccEECCcc------HHHHHHHHHHHhhcCCCcccc-------cceeccceEEEEeCCcccCccccCCCeEEEEec
Confidence 44444444 4444 233455666666433322211 1122 5544444444 788999998
Q ss_pred CChHhhhhhh
Q 031820 141 VASLLLKKDV 150 (152)
Q Consensus 141 g~~~~i~~rv 150 (152)
-+-..+++|.
T Consensus 224 ~~GkLvDAr~ 233 (245)
T PF01577_consen 224 HEGKLVDARS 233 (245)
T ss_pred cCCEEEehhh
Confidence 7766666653
No 57
>PRK13695 putative NTPase; Provisional
Probab=31.99 E-value=1.9e+02 Score=21.73 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=7.0
Q ss_pred HhhcCCCeEEEecc
Q 031820 45 AQADSRPLLIVAED 58 (152)
Q Consensus 45 ~~~~~rpLlIiAed 58 (152)
+.+.++|++++.-+
T Consensus 122 ~~~~~~~~i~v~h~ 135 (174)
T PRK13695 122 VLDSEKPVIATLHR 135 (174)
T ss_pred HHhCCCeEEEEECc
Confidence 33445555555544
No 58
>COG3363 Archaeal IMP cyclohydrolase [Nucleotide transport and metabolism]
Probab=30.29 E-value=68 Score=26.27 Aligned_cols=75 Identities=9% Similarity=0.153 Sum_probs=50.2
Q ss_pred hhcccccccceEE---EecCCCCCchhhHhhhhhhhhhhhcCeEeec-cccCCCCCCCCceeeEEEEeCCceEEEcCCCC
Q 031820 67 LILGKTCLQNKVS---IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVA 142 (152)
Q Consensus 67 Lv~Nklrg~l~v~---VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~ 142 (152)
|++-|++.+-+++ |.+- +|.++|....++= ..|+.. .+-...++-.==+|-|++ |+|.++..+..
T Consensus 7 lvvGk~~~g~~~aaYrVsSR---SFpnR~~~~re~~-----vaVVP~d~~e~~~NPYvtYnCiriv---~~~~VvsNGsh 75 (200)
T COG3363 7 LVVGKLEDGTPFAAYRVSSR---SFPNRRIEVREGA-----VAVVPEDPSEITENPYVTYNCIRIV---DETAVVSNGSH 75 (200)
T ss_pred EEEeecCCCCceEEEEEecc---cCCCcceeeccCc-----eEEeccCccccccCCcEEEEEEEEE---CCeEEEcCCcc
Confidence 5666775555555 8888 9999887666642 345555 332333444445666654 78888988888
Q ss_pred hHhhhhhhcC
Q 031820 143 SLLLKKDVHS 152 (152)
Q Consensus 143 ~~~i~~rv~~ 152 (152)
.+-|.+.+|+
T Consensus 76 tD~IadKl~~ 85 (200)
T COG3363 76 TDPIADKLES 85 (200)
T ss_pred cchHHHHHhc
Confidence 8999988875
No 59
>PF03103 DUF243: Domain of unknown function (DUF243); InterPro: IPR004145 This domain is only found in fly proteins. It is found associated with YLP motifs (IPR004019 from INTERPRO) in some proteins.
Probab=29.31 E-value=45 Score=24.51 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.2
Q ss_pred hhhhhhcccccccceEE-EecC
Q 031820 63 LIGSLILGKTCLQNKVS-IAKP 83 (152)
Q Consensus 63 aL~tLv~Nklrg~l~v~-VkaP 83 (152)
.-..++.+..+..++|+ ||||
T Consensus 20 ~~~~~~~~~~~K~yrVvFIKaP 41 (97)
T PF03103_consen 20 QAAHQLAGPPQKHYRVVFIKAP 41 (97)
T ss_pred cchhhhcccCCCCcEEEEEECC
Confidence 34468889999999999 9999
No 60
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=28.96 E-value=59 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.8
Q ss_pred cchHHHHHHH--HhhcC-CCeEEEecccc
Q 031820 35 VSKNIVEQAI--AQADS-RPLLIVAEDVE 60 (152)
Q Consensus 35 s~~~~ilp~L--~~~~~-rpLlIiAedv~ 60 (152)
+++++|.+.+ ..+.+ ||-+|||+-+-
T Consensus 214 ~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 214 HDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred cCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 5688999999 55544 99999998764
No 61
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=28.54 E-value=34 Score=27.77 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=40.5
Q ss_pred ccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHHH--hhcCCCeEEEecccccchhhhhhcccccccceE
Q 031820 2 KLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAIA--QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKV 78 (152)
Q Consensus 2 ~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L~--~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v 78 (152)
.+-.|.-|||| .-.. .+.+|..+ +.+.-.++ .+....=+|++-+..+-.+++.+..++. ++.
T Consensus 29 ~L~SG~~S~~y~D~~~----i~~~p~~l---------~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~--~p~ 93 (206)
T PRK13809 29 ILASGEETPIYVDMRL----VISSPEVL---------QTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYN--IPM 93 (206)
T ss_pred EECCcCCCCEEEEChh----hccCHHHH---------HHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhC--CCE
Confidence 35679999999 4322 44444322 22222331 1222456799999999999999988863 555
Q ss_pred E-Eec
Q 031820 79 S-IAK 82 (152)
Q Consensus 79 ~-Vka 82 (152)
+ ++.
T Consensus 94 ~~~RK 98 (206)
T PRK13809 94 VLRRK 98 (206)
T ss_pred EEEeC
Confidence 6 554
No 62
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=3.2e+02 Score=25.43 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=62.3
Q ss_pred EeeCceEEEecccccchHHHHHHH--------------HhhcCCC-eEEEecccccchhhhhhcccccccceEE-EecCC
Q 031820 21 VLENPFLLILENMIVSKNIVEQAI--------------AQADSRP-LLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPH 84 (152)
Q Consensus 21 ele~p~ILltd~kIs~~~~ilp~L--------------~~~~~rp-LlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~ 84 (152)
+..+|.+- +...|++.++++-++ ..+.+.. .++-+..|+.-+.+.|.=+.+ +.+- |+..
T Consensus 229 ~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I---lt~~~v~~~- 303 (524)
T COG0459 229 EIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI---LTGRRVKKE- 303 (524)
T ss_pred ccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc---eecceecch-
Confidence 34444444 455555555554444 3455778 899999999988887765432 3333 5555
Q ss_pred CCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCce--eeEEEEe
Q 031820 85 EDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS--CKELLYQ 130 (152)
Q Consensus 85 ~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~--a~~v~vt 130 (152)
+.| +-|+-+|||+.++. +++.+...+|. |..+.-+
T Consensus 304 --dl~-------~~l~~~~ga~~v~~--~~d~t~~~~G~~~~~~ve~~ 340 (524)
T COG0459 304 --DLG-------ERLAKLGGAKIVSV--LKDLTTIVLGEGAAGLVEET 340 (524)
T ss_pred --hhH-------HHHHHccCceEEee--cccCceeecCccccceEEEe
Confidence 444 26899999998876 56677888998 8888776
No 63
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=27.78 E-value=27 Score=31.99 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=35.4
Q ss_pred hhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEE
Q 031820 66 SLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEL 127 (152)
Q Consensus 66 tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v 127 (152)
.||+|--...|.-+ |-|=..-.|- -.|.+|..|||.+.|- +++.+...||+|+.|
T Consensus 289 QLiYnyPeqLf~dagi~aIEHADFd-----GiERLalvtGGeI~ST--Fd~p~~~klG~C~~I 344 (527)
T KOG0363|consen 289 QLIYNYPEQLFADAGIMAIEHADFD-----GIERLALVTGGEIVST--FDNPELVKLGECDLI 344 (527)
T ss_pred hHhhcCHHHHHhhcCcceeecccch-----hHHHHhhcccceeeec--cCCcchhccccchhh
Confidence 46666655555444 3333101342 2577999999998875 667777888998754
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=27.08 E-value=1.4e+02 Score=23.89 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=46.1
Q ss_pred EeeCceEEEecccccch-------HHHHHHH--HhhcCCCeEEEecccccchhhh---hhcccccccceEEEecCCCCCc
Q 031820 21 VLENPFLLILENMIVSK-------NIVEQAI--AQADSRPLLIVAEDVEDKLIGS---LILGKTCLQNKVSIAKPHEDDY 88 (152)
Q Consensus 21 ele~p~ILltd~kIs~~-------~~ilp~L--~~~~~rpLlIiAedv~~eaL~t---Lv~Nklrg~l~v~VkaP~~~gf 88 (152)
.|++.=+|+.|. |..+ +.+.-++ ..+.++++ |++-+..+..|.. =+.+|+.+++.+-++.| ..
T Consensus 94 ~~~~~DlL~iDD-i~~l~~~~~~q~~lf~l~n~~~~~~k~l-i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p---d~ 168 (219)
T PF00308_consen 94 RLRSADLLIIDD-IQFLAGKQRTQEELFHLFNRLIESGKQL-ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP---DD 168 (219)
T ss_dssp HHCTSSEEEEET-GGGGTTHHHHHHHHHHHHHHHHHTTSEE-EEEESS-TTTTTTS-HHHHHHHHCSEEEEE-------H
T ss_pred hhhcCCEEEEec-chhhcCchHHHHHHHHHHHHHHhhCCeE-EEEeCCCCccccccChhhhhhHhhcchhhcCCC---CH
Confidence 355566666664 3322 3466666 66777775 5555667777663 35577887766559999 66
Q ss_pred hhhHhhhhhhhhhhhcC
Q 031820 89 EKETKAIMDDLAILTGG 105 (152)
Q Consensus 89 G~~rk~~L~DiAilTGg 105 (152)
+.|+.+|+..|---|-
T Consensus 169 -~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 169 -EDRRRILQKKAKERGI 184 (219)
T ss_dssp -HHHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 6677888888775443
No 65
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=25.98 E-value=54 Score=28.74 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=48.0
Q ss_pred CeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec--cccCC------CC---C
Q 031820 51 PLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG--ATNVS------FM---P 118 (152)
Q Consensus 51 pLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~--~~l~~------~~---~ 118 (152)
==+|||.|+++|||..|-- |..++++ +..+. .+ +. -.++--+.||-++-+ ..+.+ ++ +
T Consensus 194 ~EviiAP~f~~eAleiL~~---KKnlRll~~~~~~--~~---~~--~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~P 263 (315)
T PF01808_consen 194 LEVIIAPDFTPEALEILKK---KKNLRLLKLPDPP--NS---KP--ELEFRSVDGGLLVQDRDNALIDPDDWKVVTKRQP 263 (315)
T ss_dssp EEEEEESEB-HHHHHHHHC---TCCGEEEEEEEST--TC-------SEEEEEETTEEEEEE--SGGCSGGGGEEESSS--
T ss_pred EEEEEeCCCCHHHHHHHHh---cCCeEEEEecccc--cC---CC--CeEEEEEeccEEEEcCCCCCCCHHHCeEecCCCC
Confidence 3479999999999997743 4578887 55541 11 01 234555677766655 11100 11 1
Q ss_pred -----C---------CCceeeEEEEeCCceEEEcCCCChH
Q 031820 119 -----L---------MLGSCKELLYQMTRWLSLVGLVASL 144 (152)
Q Consensus 119 -----~---------~LG~a~~v~vtkd~T~il~g~g~~~ 144 (152)
. -.-+..-|++.||..++=-|.|...
T Consensus 264 t~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~s 303 (315)
T PF01808_consen 264 TEEELEDLLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMS 303 (315)
T ss_dssp -HHHHHHHHHHHHHHHCSSSSEEEEEETTEEEEEEESSSS
T ss_pred CHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEeCCCCcc
Confidence 0 1234566788888877766666543
No 66
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=25.94 E-value=81 Score=28.73 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.6
Q ss_pred cCCCeEEEecccccchhhhhhcccccccceEE
Q 031820 48 DSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS 79 (152)
Q Consensus 48 ~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~ 79 (152)
.++||+++||.==+.||..++.-++.|.++..
T Consensus 406 ~~hplivv~~~D~gKaLGq~l~~~l~~~~pli 437 (473)
T COG4819 406 NPHPLIVVAEQDFGKALGQLLRPQLPGQLPLI 437 (473)
T ss_pred CCCcEEEEEhhHHHHHHHHHhcccCCCCccEE
Confidence 35799999999999999999999999988764
No 67
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=25.65 E-value=39 Score=20.34 Aligned_cols=12 Identities=0% Similarity=0.055 Sum_probs=6.6
Q ss_pred Cccccccc-cCCC
Q 031820 5 WRPVSSYF-TNQK 16 (152)
Q Consensus 5 rGylSpyf-td~~ 16 (152)
++|++||. -+..
T Consensus 9 ~aylNp~~~~~~~ 21 (40)
T PF04810_consen 9 RAYLNPFCQFDDG 21 (40)
T ss_dssp --BS-TTSEEETT
T ss_pred CCEECCcceEcCC
Confidence 68999999 4443
No 68
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=24.62 E-value=1.7e+02 Score=27.99 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=47.4
Q ss_pred eeCceEEEecccccc-------hHHHHHHH--HhhcCCCeEEEecccccchhhhh---hcccccccceEEEecCCCCCch
Q 031820 22 LENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVSIAKPHEDDYE 89 (152)
Q Consensus 22 le~p~ILltd~kIs~-------~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tL---v~Nklrg~l~v~VkaP~~~gfG 89 (152)
|.++-+|+.|. |.. -++++-++ ..+.+++++| +-+..+.-|..| +..|+..++.+-|+.| .+
T Consensus 375 y~~~DLLlIDD-Iq~l~gke~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~P---D~- 448 (617)
T PRK14086 375 YREMDILLVDD-IQFLEDKESTQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPP---EL- 448 (617)
T ss_pred hhcCCEEEEeh-hccccCCHHHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCC---CH-
Confidence 44556677765 322 24577766 5555777665 556666666543 5566766655449999 76
Q ss_pred hhHhhhhhhhhhhh
Q 031820 90 KETKAIMDDLAILT 103 (152)
Q Consensus 90 ~~rk~~L~DiAilT 103 (152)
+.|.++|+=.|-.-
T Consensus 449 EtR~aIL~kka~~r 462 (617)
T PRK14086 449 ETRIAILRKKAVQE 462 (617)
T ss_pred HHHHHHHHHHHHhc
Confidence 46777877666543
No 69
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=23.96 E-value=36 Score=30.93 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=43.3
Q ss_pred hcCCCeEEEeccccc-----chhhhhhccccccc----ceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEee
Q 031820 47 ADSRPLLIVAEDVED-----KLIGSLILGKTCLQ----NKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLN 109 (152)
Q Consensus 47 ~~~rpLlIiAedv~~-----eaL~tLv~Nklrg~----l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~ 109 (152)
+...++.|..++++. ++...++.|+++.. .+++ ++. ++++..+.+|.|-.|++..++-.
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~----~i~d~a~~~l~~~~I~~~~~v~~ 312 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKL----PIGDLATQYFADRDIFCAGRVPE 312 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC----CCcHHHHHHHHHCCcEEEEeCCH
Confidence 334567777777655 55566788887655 7777 544 58999999999999987776643
No 70
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=23.88 E-value=81 Score=22.34 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=15.7
Q ss_pred ceeeEEEEeCCceEEEc
Q 031820 122 GSCKELLYQMTRWLSLV 138 (152)
Q Consensus 122 G~a~~v~vtkd~T~il~ 138 (152)
|++.|+.|.+|+.+++.
T Consensus 29 GNv~Ri~Ikk~~~tll~ 45 (84)
T PF14242_consen 29 GNVTRIIIKKDDKTLLD 45 (84)
T ss_pred cCeEEEEEEcCCeEEEE
Confidence 99999999999999875
No 71
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=23.77 E-value=1.4e+02 Score=27.26 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=34.8
Q ss_pred cC-Cccccccc-cCCCCceEEeeC------------c-------eEEEecccccchHHHHHHH--HhhcCCCeEEEeccc
Q 031820 3 LK-WRPVSSYF-TNQKAKDCVLEN------------P-------FLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDV 59 (152)
Q Consensus 3 fd-rGylSpyf-td~~~~~~ele~------------p-------~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv 59 (152)
|| |||.|-|| ++....+...+. - ++ +.|+...+.+++.... ..+..+|=++|++.-
T Consensus 142 yd~~~~~s~~~~~~~~~~~i~~~~~~~~~G~~~~e~~~~~~~~~~~-~~~~~f~~~~~l~~~f~~~L~~~~~di~i~dr~ 220 (500)
T TIGR02918 142 YSYTRYFSEYYAPADNKAKLYQRTFYNEDGSIAYEEYIDGDESIFV-FPDKILYSKQELIAYFLKQLNLTKKDIIILDRS 220 (500)
T ss_pred EeCCceEEEEccCCCcCCcEEEEEEECCCCcEEEEeeeCCCeeEEE-EeeeEECCHHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 45 89999999 653322222222 1 22 3478888888888877 334556667777554
Q ss_pred c
Q 031820 60 E 60 (152)
Q Consensus 60 ~ 60 (152)
.
T Consensus 221 ~ 221 (500)
T TIGR02918 221 T 221 (500)
T ss_pred c
Confidence 4
No 72
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.77 E-value=1.2e+02 Score=27.21 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=45.7
Q ss_pred eeCceEEEecccccchHHHHHHH--HhhcCCC--eEEEeccccc---chhhhhhcccccccceEEEecCCCCCchhhHhh
Q 031820 22 LENPFLLILENMIVSKNIVEQAI--AQADSRP--LLIVAEDVED---KLIGSLILGKTCLQNKVSIAKPHEDDYEKETKA 94 (152)
Q Consensus 22 le~p~ILltd~kIs~~~~ilp~L--~~~~~rp--LlIiAedv~~---eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~ 94 (152)
...|.||=|- +.++.++-+++ +.+.+.| .|.-|-.-=+ |=...-.+++++-.|++ + -||.|.-..
T Consensus 146 ~~kPiIlSTG--ma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~----~--vGlSDHT~g 217 (347)
T COG2089 146 KGKPIILSTG--MATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNA----I--VGLSDHTLG 217 (347)
T ss_pred cCCCEEEEcc--cccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCC----c--cccccCccc
Confidence 3445555554 46666666666 5555556 3333332211 11222334444444422 1 277788777
Q ss_pred hhhhhhhhh-cCeEeec-ccc
Q 031820 95 IMDDLAILT-GGQVLNG-ATN 113 (152)
Q Consensus 95 ~L~DiAilT-Gg~vi~~-~~l 113 (152)
.+-.+|.+. ||.||.. +++
T Consensus 218 ~~a~l~AvALGA~viEKHFtl 238 (347)
T COG2089 218 ILAPLAAVALGASVIEKHFTL 238 (347)
T ss_pred hhHHHHHHHhcccceeeeeee
Confidence 888877655 8888877 444
No 73
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=22.99 E-value=76 Score=28.76 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=50.1
Q ss_pred CeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCC--------
Q 031820 51 PLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLML-------- 121 (152)
Q Consensus 51 pLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~L-------- 121 (152)
-=+|||.++++|||..|--.| .|.+.++ +. | .+.. .. .++--+.||.++-+.....++.+.|
T Consensus 136 ~EvIIAP~f~~eALeiL~~KK-n~nlriL~~~-~---~~~~---~~-~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vVT~~~ 206 (390)
T PRK07106 136 SDGIIAPGYTPEALEILKAKK-KGNYNIIKID-P---NYEP---AP-IETKDVFGITFEQGRNELKIDEDLLKNIVTENK 206 (390)
T ss_pred EEEEEcCCCCHHHHHHHHhCc-CCceEEEEcC-C---CCCC---Cc-eEEEEEeeEEEEECCCCCCCCHHHhhcccCCCC
Confidence 347999999999999776433 4567776 52 2 2211 11 1333446777665511000011111
Q ss_pred -------------------ceeeEEEEeCCceEEEcCCCChHhh
Q 031820 122 -------------------GSCKELLYQMTRWLSLVGLVASLLL 146 (152)
Q Consensus 122 -------------------G~a~~v~vtkd~T~il~g~g~~~~i 146 (152)
=+...|.+.||..+|=-|.|.+..+
T Consensus 207 ~pt~~e~~DL~fAw~vvK~vkSNaIv~akdg~tvGIGaGQ~SRV 250 (390)
T PRK07106 207 ELPDEAKRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQSRI 250 (390)
T ss_pred CcCHHHHHHHHHHHHHHHhcccceEEEEeCCeEEEeCCCCcchH
Confidence 1334789999999998888876544
No 74
>PF13987 YedD: YedD-like protein
Probab=22.69 E-value=26 Score=26.27 Aligned_cols=26 Identities=38% Similarity=0.334 Sum_probs=21.8
Q ss_pred ccccchhhhhhcccccccceEE-----EecC
Q 031820 58 DVEDKLIGSLILGKTCLQNKVS-----IAKP 83 (152)
Q Consensus 58 dv~~eaL~tLv~Nklrg~l~v~-----VkaP 83 (152)
-|++||+++||+++--.+|.|= |--|
T Consensus 23 lvSpeAiASLivt~~GdTLDCRQWQRVia~P 53 (111)
T PF13987_consen 23 LVSPEAIASLIVTKEGDTLDCRQWQRVIAKP 53 (111)
T ss_pred ccChhheeEEEEccCCCccchhhhheeeecc
Confidence 4799999999999998888774 5566
No 75
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=21.67 E-value=1.2e+02 Score=28.61 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=33.2
Q ss_pred ceEEEecccccchHHHHHHHHhhcCCCeEEEecccccchhhh
Q 031820 25 PFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGS 66 (152)
Q Consensus 25 p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv~~eaL~t 66 (152)
-++++||.-|++.++-.-+++..++-||-||-=.|.+.-+..
T Consensus 416 VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVGd~df~~ 457 (529)
T KOG1327|consen 416 VLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVGDADFDM 457 (529)
T ss_pred EEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeCCCCHHH
Confidence 467889999999999888888888889988876666554443
No 76
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=21.34 E-value=1e+02 Score=24.28 Aligned_cols=98 Identities=11% Similarity=0.174 Sum_probs=50.7
Q ss_pred ccccccCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccceEE-EecCC
Q 031820 8 VSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPH 84 (152)
Q Consensus 8 lSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~ 84 (152)
..||++|.- .++.+++|||= .-..+.-++.++ +++.- .....+- |+.|+
T Consensus 11 Fg~Yl~d~~-~~I~ieDPYir----~~hQi~Nl~~F~El~vk~~-----------------------~~~~~i~LvT~~d 62 (148)
T cd02685 11 FGPYLDDGV-TEITVEDPYIR----NFHQIRNFLRFCELVVKPP-----------------------CELKYIHLVTGED 62 (148)
T ss_pred HHHHHhCCc-eEEEEeCcccc----chHHHHHHHHHHHHHhcCc-----------------------cceEEEEEEecCC
Confidence 479995433 38999999973 222334444444 33311 1122233 78884
Q ss_pred CCCchhhHhhhhhhhhhhh--cCeEeeccccCCCCCCCCceeeEEEEeCCceEEEcCCC
Q 031820 85 EDDYEKETKAIMDDLAILT--GGQVLNGATNVSFMPLMLGSCKELLYQMTRWLSLVGLV 141 (152)
Q Consensus 85 ~~gfG~~rk~~L~DiAilT--Gg~vi~~~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g 141 (152)
+ .-++.+++.|+-|+--. +|-.+ ....++ + -..++|+ +.+.++|.=|.|
T Consensus 63 ~-~~~~~Q~~~l~~i~~sl~~~gI~~-~~~f~~-t----iHDR~I~-~~nGw~IkigRG 113 (148)
T cd02685 63 E-DNGKQQIEALEEIKQSLASHGVEF-TWEFSD-T----IHDREIR-TDNGWIIKIGRG 113 (148)
T ss_pred C-CCHHHHHHHHHHHHHHHHhCCcEE-EEEECC-C----ccceEEE-ecCCeEEEECCc
Confidence 3 34667778887776422 23222 122221 1 2345554 445777776665
No 77
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.11 E-value=88 Score=27.84 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=35.0
Q ss_pred EEeeCceEEEecccccch-----HHHHHHH---HhhcCCCeEEEeccccc
Q 031820 20 CVLENPFLLILENMIVSK-----NIVEQAI---AQADSRPLLIVAEDVED 61 (152)
Q Consensus 20 ~ele~p~ILltd~kIs~~-----~~ilp~L---~~~~~rpLlIiAedv~~ 61 (152)
+-|..|-+|+-|.++++. +|++|.| ..+.+-|.|-+.-.+++
T Consensus 142 ALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 142 ALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 457899999999999986 4899999 45667799999888765
No 78
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=93 Score=28.76 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=50.8
Q ss_pred HhhcCCCeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCce
Q 031820 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS 123 (152)
Q Consensus 45 ~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~ 123 (152)
+.++|-.+|+|-..+=.||++.|.+.=+.. +++. ||-- .|++ .|=+.-..|.+.+++ ++..+.+.||+
T Consensus 285 IKk~gcnvLliQKSILRdavsDLAlHfL~k-lkimvikdi-------eRed-iefick~l~c~Pia~--id~f~~d~Lg~ 353 (534)
T KOG0358|consen 285 IKKAGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVIKDI-------ERED-IEFICKTLGCKPIAD--IDHFTADKLGS 353 (534)
T ss_pred HHhcCCeEEEEeHHHHHHHHHHHHHHHHHh-CcEEEEccc-------cHhh-HHHHHhhcCCeecch--hhhcChhhcCc
Confidence 667788999999999999999998887775 7777 8888 4432 233344446666655 55566667766
Q ss_pred eeEE
Q 031820 124 CKEL 127 (152)
Q Consensus 124 a~~v 127 (152)
|.=+
T Consensus 354 adlv 357 (534)
T KOG0358|consen 354 ADLV 357 (534)
T ss_pred chhh
Confidence 6543
No 79
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=20.10 E-value=73 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=21.2
Q ss_pred cCCCeEEEecccccchhhhhhccccccc
Q 031820 48 DSRPLLIVAEDVEDKLIGSLILGKTCLQ 75 (152)
Q Consensus 48 ~~rpLlIiAedv~~eaL~tLv~Nklrg~ 75 (152)
...+.+++|++..+.-+. +...+.+|.
T Consensus 8 ~~~~~IlV~~~~~p~~~~-~~~~~~~Gi 34 (80)
T PF00391_consen 8 LPEGVILVAEELTPSDLA-LDLQRVAGI 34 (80)
T ss_dssp TTSTEEEEESS--TTCHH-SHHTTSSEE
T ss_pred CCCCEEEEECCCCHHHHh-cchhheEEE
Confidence 456889999999999999 888888884
No 80
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.04 E-value=1e+02 Score=21.62 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=14.8
Q ss_pred cCCCeEEEecccccchhhhh
Q 031820 48 DSRPLLIVAEDVEDKLIGSL 67 (152)
Q Consensus 48 ~~rpLlIiAedv~~eaL~tL 67 (152)
.+--|+|||+|.+++.-..+
T Consensus 23 gkakLViiA~Da~~~~~k~i 42 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKI 42 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHH
Confidence 34589999999997655543
Done!