Query 031820
Match_columns 152
No_of_seqs 133 out of 1156
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3osx_A 60 kDa chaperonin; alph 100.0 1.4E-69 4.9E-74 436.4 11.7 148 1-151 15-169 (201)
2 3m6c_A 60 kDa chaperonin 1; ch 100.0 2E-69 6.8E-74 434.0 11.1 148 1-151 8-162 (194)
3 1srv_A Protein (groel (HSP60 c 100.0 9.6E-69 3.3E-73 413.6 11.6 137 1-140 2-145 (145)
4 3rtk_A 60 kDa chaperonin 2; he 100.0 1.8E-39 6.3E-44 292.4 11.2 148 1-151 191-345 (546)
5 1kp8_A Groel protein; chaperon 100.0 4.5E-39 1.5E-43 289.7 12.6 148 1-151 192-346 (547)
6 1we3_A CPN60(groel); chaperoni 100.0 2.7E-38 9.4E-43 284.1 10.5 148 1-151 191-345 (543)
7 1iok_A Chaperonin 60; chaperon 100.0 3.4E-38 1.2E-42 283.7 10.0 148 1-151 193-347 (545)
8 3iyg_E T-complex protein 1 sub 99.9 1.6E-22 5.5E-27 180.1 9.5 129 1-144 206-359 (515)
9 3p9d_E T-complex protein 1 sub 99.8 1.1E-21 3.7E-26 176.8 8.2 128 1-143 243-401 (562)
10 3p9d_A T-complex protein 1 sub 99.8 1.4E-21 4.7E-26 176.0 6.6 123 1-142 222-379 (559)
11 3aq1_B Thermosome subunit; gro 99.8 4.6E-21 1.6E-25 170.3 7.4 120 1-142 170-319 (500)
12 3iyg_H T-complex protein 1 sub 99.8 1.1E-20 3.9E-25 168.5 9.1 124 1-143 205-358 (515)
13 1a6d_A Thermosome (alpha subun 99.8 4.6E-21 1.6E-25 172.0 6.1 120 1-142 216-365 (545)
14 1q3q_A Thermosome alpha subuni 99.8 8.9E-21 3E-25 170.2 7.0 120 1-142 219-368 (548)
15 1a6d_B Thermosome (beta subuni 99.8 1.6E-20 5.4E-25 168.3 6.4 120 1-142 217-366 (543)
16 3ruv_A Chaperonin, CPN; double 99.8 2.3E-20 8E-25 167.3 7.1 123 1-144 212-363 (543)
17 3ko1_A Chaperonin; 9-fold symm 99.8 6.7E-20 2.3E-24 164.9 8.0 123 1-144 226-377 (553)
18 3p9d_C T-complex protein 1 sub 99.8 1.7E-19 5.7E-24 163.8 6.2 123 1-145 223-376 (590)
19 3iyg_B T-complex protein 1 sub 99.8 9.8E-19 3.3E-23 155.8 9.5 117 1-140 205-352 (513)
20 3iyg_Z T-complex protein 1 sub 99.8 6.7E-19 2.3E-23 157.1 8.4 122 1-144 202-362 (517)
21 3p9d_D T-complex protein 1 sub 99.7 1.8E-18 6.3E-23 154.6 8.7 109 1-130 213-353 (528)
22 3iyg_D T-complex protein 1 sub 99.7 2.1E-18 7.3E-23 153.8 8.1 123 1-140 206-358 (518)
23 3p9d_F T-complex protein 1 sub 99.7 1.3E-18 4.3E-23 156.1 4.5 122 1-143 213-373 (546)
24 3iyg_A T-complex protein 1 sub 99.7 6.4E-18 2.2E-22 151.0 8.5 122 1-143 208-364 (529)
25 3p9d_G T-complex protein 1 sub 99.7 1.1E-17 3.8E-22 150.3 6.9 121 1-140 218-368 (550)
26 3p9d_B T-complex protein 1 sub 99.7 2.2E-17 7.4E-22 147.4 4.3 117 1-140 212-359 (527)
27 3iyg_Q T-complex protein 1 sub 99.7 1.4E-16 4.8E-21 141.8 8.8 114 1-132 205-339 (512)
28 3iyg_G T-complex protein 1 sub 99.6 1.9E-16 6.4E-21 141.2 8.3 122 1-143 206-357 (515)
29 3p9d_H T-complex protein 1 sub 99.5 3.6E-15 1.2E-19 134.5 3.9 116 1-140 226-374 (568)
30 1ass_A Thermosome; chaperonin, 97.9 5.6E-05 1.9E-09 57.8 8.9 110 18-142 15-153 (159)
31 1gml_A T-complex protein 1 sub 97.3 0.00072 2.5E-08 52.4 7.8 108 17-139 20-157 (178)
32 2dun_A POL MU, DNA polymerase 40.5 6.1 0.00021 29.5 0.1 26 87-112 22-47 (133)
33 3n2l_A OPRT, oprtase, orotate 31.0 20 0.00067 28.7 1.7 69 2-83 49-126 (238)
34 2pt7_G HP1451, hypothetical pr 29.7 27 0.00091 26.3 2.1 32 66-101 63-94 (152)
35 2coe_A Deoxynucleotidyltransfe 29.0 34 0.0012 24.7 2.5 25 87-111 32-56 (120)
36 3imk_A Putative molybdenum car 26.5 1.5E+02 0.005 22.6 5.8 73 23-99 74-156 (158)
37 3m3h_A OPRT, oprtase, orotate 25.3 18 0.00062 28.7 0.5 64 3-81 49-118 (234)
38 3v7e_A Ribosome-associated pro 25.1 27 0.00093 23.0 1.3 34 46-79 23-57 (82)
39 3dez_A OPRT, oprtase, orotate 23.2 24 0.00083 28.1 0.9 65 3-82 61-131 (243)
40 1jo0_A Hypothetical protein HI 23.1 94 0.0032 21.5 3.9 61 47-110 16-77 (98)
41 1lh0_A OMP synthase; loop clos 21.9 22 0.00076 27.2 0.4 67 2-81 24-99 (213)
42 2aee_A OPRT, oprtase, orotate 21.5 24 0.00083 26.8 0.5 25 50-74 68-92 (211)
43 1rq8_A Conserved hypothetical 21.1 86 0.0029 22.0 3.3 61 47-110 15-76 (104)
44 4a5z_A MITD1, MIT domain-conta 21.0 1.3E+02 0.0045 22.9 4.6 99 8-141 27-130 (163)
45 4hwm_A Uncharacterized protein 20.4 21 0.00072 26.3 -0.0 22 58-79 34-55 (130)
No 1
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=100.00 E-value=1.4e-69 Score=436.36 Aligned_cols=148 Identities=24% Similarity=0.381 Sum_probs=146.1
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|||||||+|||| ||+++|+|+|+|||||+||+|||++++|+|+| +++.+||||||||||++|||+|||+||+||+++
T Consensus 15 ~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs~i~~ilP~LE~v~~~~rpLlIIAEDvegEALatLvvNklrg~l~ 94 (201)
T 3osx_A 15 MQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIAEDVEGEALATLVVNNMRGIVK 94 (201)
T ss_dssp EEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEECCHHHHHHHHHHHHTSSCCEEEEEEEECHHHHHHHHHHHHHTSCC
T ss_pred cEecCccCChheeecccCCEEEecCCeEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEeccccchhhhHHHHhhccceEE
Confidence 899999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|| |||| ||||+||++|+||||+|||+||++ ++|+++++++||+|++|+||||+|+|++|.|++++|++||+
T Consensus 95 v~AVKAP---gFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~ 169 (201)
T 3osx_A 95 VASVKAP---GFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVT 169 (201)
T ss_dssp EEEEECS---SCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred EEEEeCC---CCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEcCCceEEecCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999999 89999999999999999999999999999999999999985
No 2
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-69 Score=433.96 Aligned_cols=148 Identities=26% Similarity=0.367 Sum_probs=146.2
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|||||||+|||| ||+++|+|+|+|||||+||+|||++++|+|+| +.+++||||||||||++|||+|||+||+||+++
T Consensus 8 mqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs~i~~ilP~LE~~~~~~kpLlIIAedvegeaLatLvvNklrg~l~ 87 (194)
T 3m6c_A 8 IGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLK 87 (194)
T ss_dssp EEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHHHTSSC
T ss_pred eEccCcccCceeeeccCCcEEEEecceEEEEcCccCCHHHHHHHHHHHHHhCCCeEEEecccccchhhhhhhhhccceEE
Confidence 899999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|| |||| ||||+||++|+|||++|||+||++ ++|+++++++||+|++|+||||+|+|++|+|++++|++||+
T Consensus 88 v~AVKAP---gfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~T~iv~G~g~~~~I~~Rv~ 162 (194)
T 3m6c_A 88 AVAVKGP---YFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAK 162 (194)
T ss_dssp EEEEECS---SCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred EEEEECC---CCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEEEEcCCceEEecCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999999 89999999999999999999999999999999999999985
No 3
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=100.00 E-value=9.6e-69 Score=413.58 Aligned_cols=137 Identities=26% Similarity=0.417 Sum_probs=135.0
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|||||||+|||| ||+++|+++|||||||+||+|||+++|++|+| ++|++||||||||||++|||+|||+||+||+++
T Consensus 2 mqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedvegeaLatLvvNklrg~l~ 81 (145)
T 1srv_A 2 YQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLS 81 (145)
T ss_dssp EEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHTTSCC
T ss_pred ccccCCccCceeecCccccEEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccchhhhhhhhhhhhcccce
Confidence 899999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCC
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGL 140 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~ 140 (152)
|| |||| ||||+||++|+|||++|||+||++ ++|+++++++||+|++|+||||+|+|++|+
T Consensus 82 v~AVKAP---gfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtkd~TtIv~G~ 145 (145)
T 1srv_A 82 VAAVKAP---GFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGK 145 (145)
T ss_dssp EEEEECC---SSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEEC
T ss_pred EEEEeCC---CcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcCCCeEEeCCC
Confidence 99 9999 999999999999999999999999 999999999999999999999999999874
No 4
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=1.8e-39 Score=292.37 Aligned_cols=148 Identities=26% Similarity=0.429 Sum_probs=143.7
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|+|||||+|||| ||+++|..+++||+||++|.||+++++++|+| +.+.++||||++++|+++||++|+.|++||+++
T Consensus 191 m~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~ 270 (546)
T 3rtk_A 191 MRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFK 270 (546)
T ss_dssp EEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCC
T ss_pred EEEcCCccCcccccCcccCeeEecccEEEEECCccCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceE
Confidence 689999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|+ ||+| +||++|++.|+|||++|||+++++ ++++++++++||+|++|++++|+|+++.|.++++++..|++
T Consensus 271 v~aVk~~---~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~~d~~~~i~g~~~~~~i~~r~~ 345 (546)
T 3rtk_A 271 SVAVKAP---GFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVA 345 (546)
T ss_dssp EEEEECS---SCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEECSSCEEEEEECSCHHHHHHHHH
T ss_pred EEEeccc---cccccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEcCCeEEEEcCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999997 68999999999999999999999999999999998888875
No 5
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=4.5e-39 Score=289.67 Aligned_cols=148 Identities=25% Similarity=0.392 Sum_probs=143.9
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|+|||||+|||| ||+++|.++++||+||++|.||+++++++|+| +.+.++||||++++|+++||++|+.|++||+++
T Consensus 192 ~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~ 271 (547)
T 1kp8_A 192 MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVK 271 (547)
T ss_dssp EEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSC
T ss_pred EEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhccccccee
Confidence 689999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|| |||| +||++|++.|+|||++|||+++++ ++++++++++||+|+++++++|+|+++.|.++++++++|++
T Consensus 272 v~aVk~~---~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~ 346 (547)
T 1kp8_A 272 VAAVKAP---GFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA 346 (547)
T ss_dssp EEEEECS---SCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred EEEEecc---ccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEEccceEEEEcCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999998 78999999999999999999999999999999988888875
No 6
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=2.7e-38 Score=284.08 Aligned_cols=148 Identities=24% Similarity=0.380 Sum_probs=143.6
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|+|||||+|||| ||+++|.++++||+||++|+||+++++++|+| +.+.++||||++++|+++||++|+.|++||+++
T Consensus 191 ~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~ 270 (543)
T 1we3_A 191 YQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLS 270 (543)
T ss_dssp EEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhcccccee
Confidence 689999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|| ||+| +||++|++.|+|||++|||+++++ ++++++++++||+|+++++++|+|+++.|.++++++++|++
T Consensus 271 v~aVk~~---~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~ 345 (543)
T 1we3_A 271 VAAVKAP---GFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARIN 345 (543)
T ss_dssp EEEEECS---SSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred EEEEecc---chhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEEEcCEEEEEcCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999997 78999999999999999999999999999999988888874
No 7
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=3.4e-38 Score=283.74 Aligned_cols=148 Identities=28% Similarity=0.398 Sum_probs=107.0
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccce
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
|+|||||+|||| ||+++|.++++||+||++|.||+++++++|+| +.+.++||||++++|+++||.+|+.|++||+++
T Consensus 193 ~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~ 272 (545)
T 1iok_A 193 MQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLK 272 (545)
T ss_dssp EECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBCCCCC-----------CCCCEEEESCBC-----------------
T ss_pred EEEecCccccccccCcccCceeecCCeEEEEcCCcCCHHHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccce
Confidence 689999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHhhhhhhc
Q 031820 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVH 151 (152)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g~~~~i~~rv~ 151 (152)
|+ |||| +||++|++.|+|||.+|||+++++ ++++++++++||+|++|++++|+|+++.|.++++++++|++
T Consensus 273 v~aVk~~---~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~ 347 (545)
T 1iok_A 273 IAAVKAP---GFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVS 347 (545)
T ss_dssp CEEEECS---CCTTHHHHHHHHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCCCCHHHHHHHHH
T ss_pred eEEEecc---hhhhccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEecCEEEEEeCCCCHHHHHHHHH
Confidence 99 9999 999999999999999999999997 78999999999999999999999999999999988888764
No 8
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.87 E-value=1.6e-22 Score=180.12 Aligned_cols=129 Identities=15% Similarity=0.077 Sum_probs=114.8
Q ss_pred CccCCccccccc-cCCCC-ceEEeeCceEEE-----ecccccchHHH-----------HHHH--HhhcCCCeEEEecccc
Q 031820 1 MKLKWRPVSSYF-TNQKA-KDCVLENPFLLI-----LENMIVSKNIV-----------EQAI--AQADSRPLLIVAEDVE 60 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~-~~~ele~p~ILl-----td~kIs~~~~i-----------lp~L--~~~~~rpLlIiAedv~ 60 (152)
|+|||||+|||| ++.++ +.+.|+.||.+. ++.+|++++++ .|++ +.+.++||||++++|+
T Consensus 206 ~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~ 285 (515)
T 3iyg_E 206 VIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFD 285 (515)
T ss_pred EEEecccccccccccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 689999999999 99875 889999999998 78899999997 6777 8889999999999999
Q ss_pred cchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEE-----eCCceE
Q 031820 61 DKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY-----QMTRWL 135 (152)
Q Consensus 61 ~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~v-----tkd~T~ 135 (152)
++||.+|+.|++++ |+.+ + +..|+|||.+|||++++. ++++++++||+|+++.+ ++++++
T Consensus 286 ~~al~~L~~~~I~~-----v~~v---~-----k~~le~ia~~tGa~ii~~--l~~l~~~~LG~a~~v~~~~ig~~k~~~~ 350 (515)
T 3iyg_E 286 DEANHLLLQNDLPA-----VRWV---G-----GPEIELIAIATGGRIVPR--FSELTAEKLGFAGLVKEISFGTTKDKML 350 (515)
T ss_pred HHHHHHHHHCCCEE-----Eecc---C-----HHHHHHHHHHhCCEEecc--cccCCHHHCCcceEEEEEEeccccceEE
Confidence 99999999999875 5666 3 668999999999999985 77889999999999999 889999
Q ss_pred EEcCCCChH
Q 031820 136 SLVGLVASL 144 (152)
Q Consensus 136 il~g~g~~~ 144 (152)
++.|.+++.
T Consensus 351 ~~~g~~~~~ 359 (515)
T 3iyg_E 351 VIEQCKNSR 359 (515)
T ss_pred EEEcCCCCc
Confidence 998876543
No 9
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=99.85 E-value=1.1e-21 Score=176.77 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=113.0
Q ss_pred CccCCccccccc-cCC-------CCceEEeeCceEEEec-----ccccchHH-----------HHHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYF-TNQ-------KAKDCVLENPFLLILE-----NMIVSKNI-----------VEQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyf-td~-------~~~~~ele~p~ILltd-----~kIs~~~~-----------ilp~L--~~~~~rpLlI 54 (152)
|+|||||+|||| ++. +.+.+.|+.||.+..+ .+|+++++ +.|.+ +.+.|+||||
T Consensus 243 mv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI 322 (562)
T 3p9d_E 243 VILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVI 322 (562)
T ss_dssp EEESSCCCTTSCCC-----TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCE
T ss_pred EEEecCCCCCCcCcccccccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 689999999999 986 8888999999999866 68999999 67988 8899999999
Q ss_pred EecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEE-----
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY----- 129 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~v----- 129 (152)
++++|+++||.+|+.|++++ |+.| + ++.|+|||.+|||++++. ++++++++||+|+++.+
T Consensus 323 ~~~~I~~~Al~~L~~~~I~~-----v~~v---~-----k~~le~ia~~TGa~iis~--l~~l~~~~LG~a~~v~~~~ig~ 387 (562)
T 3p9d_E 323 CQWGFDDEANHLLLQNDLPA-----VRWV---G-----GQELEHIAISTNGRIVPR--FQDLSKDKLGTCSRIYEQEFGT 387 (562)
T ss_dssp ECSSCCSHHHHHHHTTTCCC-----EECC---C-----TTTHHHHHHHHCCCEEES--SSCCCTTSCEECSCEEEECCSS
T ss_pred EeCCCCHHHHHHHHHCCCEE-----Eecc---C-----HHHHHHHHHHhCCEEEec--cccCCHHHCCcceEEEEEEecc
Confidence 99999999999999999986 6777 3 567999999999999986 78889999999999999
Q ss_pred eCCceEEEcCCCCh
Q 031820 130 QMTRWLSLVGLVAS 143 (152)
Q Consensus 130 tkd~T~il~g~g~~ 143 (152)
++++++++.|.+++
T Consensus 388 ~~~~~~~i~g~~~~ 401 (562)
T 3p9d_E 388 TKDRMLIIEQSKET 401 (562)
T ss_dssp SSCCEEEECCCSCC
T ss_pred CCceEEEEecCCCC
Confidence 68999999886653
No 10
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=99.84 E-value=1.4e-21 Score=176.00 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=105.0
Q ss_pred CccCCccccccccCCCCceEEee--CceEEEecccc-------------cchHH-----------HHHHH--HhhcCCCe
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLE--NPFLLILENMI-------------VSKNI-----------VEQAI--AQADSRPL 52 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele--~p~ILltd~kI-------------s~~~~-----------ilp~L--~~~~~rpL 52 (152)
|.||+||+|||| ..+++ ||+||++|.++ ++.++ +.|++ +.+.++||
T Consensus 222 ~v~dk~~~~~~m------~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~l 295 (559)
T 3p9d_A 222 YALNCTVASQAM------PKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQV 295 (559)
T ss_dssp ECCCCCCSSTTS------CSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeecccCCCc------ceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 689999999998 12566 99999999997 56766 78888 88999999
Q ss_pred EEEecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeec---ccc-CCCCCCCCceeeEEE
Q 031820 53 LIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATN-VSFMPLMLGSCKELL 128 (152)
Q Consensus 53 lIiAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l-~~~~~~~LG~a~~v~ 128 (152)
||++++|+++||.+|+.|++ + .+++.|+..|+|||.+|||+++++ +++ +++++++||+|++|.
T Consensus 296 vI~~~~I~~~al~~L~~~~I------~-------av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~ 362 (559)
T 3p9d_A 296 VLTTKGIDDLCLKEFVEAKI------M-------GVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVV 362 (559)
T ss_dssp EEESSCCCGGGTHHHHHTTC------E-------EESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEE
T ss_pred EEEcCCCCHHHHHHHHHcCC------c-------eEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEE
Confidence 99999999999999999975 2 334557888999999999999998 333 789999999999999
Q ss_pred ---EeCCceEEEcCCCC
Q 031820 129 ---YQMTRWLSLVGLVA 142 (152)
Q Consensus 129 ---vtkd~T~il~g~g~ 142 (152)
+++++++++.|.++
T Consensus 363 ~~~ig~~~~~~~~g~~~ 379 (559)
T 3p9d_A 363 QAKFSDDECILIKGTSK 379 (559)
T ss_dssp EEECSSCEEECEEEESS
T ss_pred EEEEcCceEEEEEcCCC
Confidence 78999999887543
No 11
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=99.83 E-value=4.6e-21 Score=170.33 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=100.3
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccc-------------ccchHHH-----------HHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIV-----------EQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~k-------------Is~~~~i-----------lp~L--~~~~~rpLlI 54 (152)
|.|||||+|||| ..+++||+||++|.+ |++++++ .|.+ +.+.++||||
T Consensus 170 ~v~dk~~~~~~m------~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi 243 (500)
T 3aq1_B 170 LVIDKERSHPNM------PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVF 243 (500)
T ss_dssp EEESCCCSSTTS------CSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEE
T ss_pred eEEeecCCCCCC------cccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEE
Confidence 679999999998 226899999999999 9999997 9999 8899999999
Q ss_pred EecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ--- 130 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt--- 130 (152)
++++|+++||.+|+.|+ ++ |+ +.|++.|+|||.+|||++++. ++++++++||+|+++.+.
T Consensus 244 ~~~~I~~~al~~L~~~~------I~av~--------~~~k~~le~ia~~tGa~iis~--l~~~~~~~LG~a~~v~~~~ig 307 (500)
T 3aq1_B 244 CQKGIDDMAQYYIEKAG------IYAVR--------RVKKSDLKRLSKVTGATIIQD--LDQITTEDVGTAGLVEEKEVR 307 (500)
T ss_dssp ESSCBCHHHHHHHHHTT------CEEEC--------SCCHHHHHHHHHHHCCCCBSC--TTCCCSTTCEEEEEEEEEECS
T ss_pred ECCCcCHHHHHHHHHCC------EEEEE--------eCCHHHHHHHHHHhCCeEecc--cccCCHhHCCCceEEEEEEec
Confidence 99999999999999986 34 53 567889999999999999985 778999999999999998
Q ss_pred CCceEEEcCCCC
Q 031820 131 MTRWLSLVGLVA 142 (152)
Q Consensus 131 kd~T~il~g~g~ 142 (152)
+++++++.|.++
T Consensus 308 ~~~~~~~~g~~~ 319 (500)
T 3aq1_B 308 GGKMTYVTGCQN 319 (500)
T ss_dssp SSEEEEEEEETT
T ss_pred CeEEEEEECCCC
Confidence 889999887553
No 12
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.82 E-value=1.1e-20 Score=168.49 Aligned_cols=124 Identities=11% Similarity=0.134 Sum_probs=105.1
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecc-------------cccchHHH-----------HHHH--HhhcCCCeE
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILEN-------------MIVSKNIV-----------EQAI--AQADSRPLL 53 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~-------------kIs~~~~i-----------lp~L--~~~~~rpLl 53 (152)
|+|||||+|||| |+++ +++||+||++|. +|++++++ .|.+ +.+.+.||+
T Consensus 205 ~~~dk~~~~p~~~~~p~----~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vv 280 (515)
T 3iyg_H 205 VAFKKTFSYAGFEMQPK----KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVV 280 (515)
T ss_pred eEEecCccCcccccCCc----cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 689999999999 9887 799999999999 69999998 5556 788999999
Q ss_pred EEecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---
Q 031820 54 IVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ--- 130 (152)
Q Consensus 54 IiAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt--- 130 (152)
|.+++|++ +++..+| .+|.+ .+++.|+..|+|||.+|||+++++ ++++++++||+|+++.++
T Consensus 281 i~~~~I~d--la~~~l~-~~gI~----------~v~~~~k~~leria~~tGa~ii~~--l~~~~~~~LG~a~~v~~~~ig 345 (515)
T 3iyg_H 281 LSKLPIGD--VATQYFA-DRDMF----------CAGRVPEEDLKRTMMACGGSIQTS--VNALSSDVLGRCQVFEETQIG 345 (515)
T ss_pred EECCcccH--HHHHHHH-HcCCc----------ccccccHHHHHHHHHHhCCEEeec--cccCCHHHCCcccEEEEEEEc
Confidence 99999985 7777777 57764 234566889999999999999986 678889999999999988
Q ss_pred CCceEEEcCCCCh
Q 031820 131 MTRWLSLVGLVAS 143 (152)
Q Consensus 131 kd~T~il~g~g~~ 143 (152)
+++++++.|.+++
T Consensus 346 ~~~~~~i~g~~~~ 358 (515)
T 3iyg_H 346 GERYNFFTGCPKA 358 (515)
T ss_pred CeEEEEEecCCCC
Confidence 5888888775543
No 13
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=99.82 E-value=4.6e-21 Score=171.99 Aligned_cols=120 Identities=16% Similarity=0.246 Sum_probs=105.1
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccc-------------ccchHHH-----------HHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIV-----------EQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~k-------------Is~~~~i-----------lp~L--~~~~~rpLlI 54 (152)
|.|||||.|||| + ..++||+||++|.+ |++++++ .|.+ +.+.++||||
T Consensus 216 ~v~dk~~~~~~m--~----~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi 289 (545)
T 1a6d_A 216 IVIDKEKVHSKM--P----DVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVL 289 (545)
T ss_dssp EEESCCCSCTTS--C----SEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEeccCCCCCC--c----ceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 689999999999 1 24899999999999 9999997 8988 8899999999
Q ss_pred EecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ--- 130 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt--- 130 (152)
++++|+++||.+|+.|+ ++ |+ +.|++.|+|||.+|||++++. ++++++++||+|++|.++
T Consensus 290 ~~~~I~~~al~~L~~~~------I~av~--------~~~k~~le~ia~~tGa~iis~--l~~~~~~~LG~a~~v~~~~ig 353 (545)
T 1a6d_A 290 CQKGIDDVAQHYLAKEG------IYAVR--------RVKKSDMEKLAKATGAKIVTD--LDDLTPSVLGEAETVEERKIG 353 (545)
T ss_dssp ESSCBCHHHHHHHHHHT------CEEEC--------SCCHHHHHHHHHHHCCCEESS--GGGCCGGGCEEEEEEEEEEET
T ss_pred ECCCccHHHHHHHHHCC------eeEec--------cCCHHHHHHHHHHhCCeeecc--cccCCHHHCCCceEEEEEEec
Confidence 99999999999999986 34 54 467889999999999999985 778889999999999997
Q ss_pred CCceEEEcCCCC
Q 031820 131 MTRWLSLVGLVA 142 (152)
Q Consensus 131 kd~T~il~g~g~ 142 (152)
+++++++.|.++
T Consensus 354 ~~~~~~~~g~~~ 365 (545)
T 1a6d_A 354 DDRMTFVMGCKN 365 (545)
T ss_dssp TEEEEEEEEESC
T ss_pred CceEEEEecCCC
Confidence 588888877543
No 14
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=99.82 E-value=8.9e-21 Score=170.25 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=106.3
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccc-------------ccchHHH-----------HHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIV-----------EQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~k-------------Is~~~~i-----------lp~L--~~~~~rpLlI 54 (152)
|.||+||.|||| + .+++||+||++|.+ |++++++ .|.+ +.+.++||||
T Consensus 219 ~v~dk~~~~~~m--~----~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi 292 (548)
T 1q3q_A 219 VVIDKEVVHPRM--P----KRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVF 292 (548)
T ss_dssp EEESCCCSSTTS--C----SEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEeccCCCCCC--c----ceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEE
Confidence 679999999999 1 25899999999999 9999997 8888 8899999999
Q ss_pred EecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ--- 130 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt--- 130 (152)
++++|+++||.+|+.|+ ++ |+ +.|++.|+|||.+|||++++. ++++++++||+|+++.++
T Consensus 293 ~~~~I~~~al~~L~~~~------I~av~--------~~~k~~le~ia~~tGa~ii~~--l~~~~~~~LG~a~~v~~~~ig 356 (548)
T 1q3q_A 293 VQKGIDDLAQHYLAKYG------IMAVR--------RVKKSDMEKLAKATGAKIVTN--VKDLTPEDLGYAEVVEERKLA 356 (548)
T ss_dssp ESSCBCHHHHHHHHHTT------CEEEC--------SCCHHHHHHHHHHHCCCCBSS--GGGCCGGGCEEESEEEEEEET
T ss_pred EcCCcCHHHHHHHHHCC------cEEEc--------cCCHHHHHHHHHHhCCeEecc--cccCCHHHCCCceEEEEEEec
Confidence 99999999999999986 34 53 467889999999999999985 778889999999999998
Q ss_pred CCceEEEcCCCC
Q 031820 131 MTRWLSLVGLVA 142 (152)
Q Consensus 131 kd~T~il~g~g~ 142 (152)
+++++++.|.++
T Consensus 357 ~~~~~~~~g~~~ 368 (548)
T 1q3q_A 357 GENMIFVEGCKN 368 (548)
T ss_dssp TEEEEEEECCSS
T ss_pred CceEEEEecCCC
Confidence 889999988654
No 15
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=99.81 E-value=1.6e-20 Score=168.34 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=105.2
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccc-------------ccchHHH-----------HHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIV-----------EQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~k-------------Is~~~~i-----------lp~L--~~~~~rpLlI 54 (152)
|.|||||.|||| + ..++||+||++|.+ |++++++ .|.+ +.+.++||||
T Consensus 217 ~v~dk~~~~~~m--~----~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi 290 (543)
T 1a6d_B 217 IIVDKEKVHPGM--P----DVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVI 290 (543)
T ss_dssp EEESCCCSSTTS--C----SEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEecCCCCCCC--c----ceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 679999999999 1 24899999999999 9999997 8988 8899999999
Q ss_pred EecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ--- 130 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt--- 130 (152)
++++|+++||.+|+.|+ ++ |+ +.|+..|+|||.+|||++++. ++++++++||+|+++.+.
T Consensus 291 ~~~~I~~~al~~L~~~~------I~av~--------~v~k~~le~ia~~tGa~iis~--l~~l~~~~LG~a~~v~~~~ig 354 (543)
T 1a6d_B 291 TQKGIDDMAQHYLSRAG------IYAVR--------RVKKSDMDKLAKATGASIVST--IDEISSSDLGTAERVEQVKVG 354 (543)
T ss_dssp ESSCBCHHHHHHHHHTT------CEEEC--------SCCHHHHHHHHHHHTCCEESC--GGGCCGGGCEEEEEEEEEEET
T ss_pred ECCCcCHHHHHHHHHCC------eeEec--------cCCHHHHHHHHHHhCCceecc--cccCCHHHCCCceEEEEEEec
Confidence 99999999999999985 34 54 457889999999999999985 678889999999999997
Q ss_pred CCceEEEcCCCC
Q 031820 131 MTRWLSLVGLVA 142 (152)
Q Consensus 131 kd~T~il~g~g~ 142 (152)
+++++++.|.++
T Consensus 355 ~~~~~~~~g~~~ 366 (543)
T 1a6d_B 355 EDYMTFVTGCKN 366 (543)
T ss_dssp TEEEEEEEEESS
T ss_pred CceEEEEecCCC
Confidence 888888887553
No 16
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=99.81 E-value=2.3e-20 Score=167.35 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=104.8
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecc-------------cccchHH-----------HHHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILEN-------------MIVSKNI-----------VEQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~-------------kIs~~~~-----------ilp~L--~~~~~rpLlI 54 (152)
|+|||||+|||| ..+++||+||++|. +|+++++ +.|.+ +.+.+.||||
T Consensus 212 ~v~dk~~~~~~m------~~~~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi 285 (543)
T 3ruv_A 212 VLVDKERVSAQM------PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLF 285 (543)
T ss_dssp EEESCCCSCTTS------CSEEEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred eEEeccccCccc------cccccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 689999999998 33689999999999 6899988 56666 7888999999
Q ss_pred EecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---C
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ---M 131 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt---k 131 (152)
++++|+++||..|+ .+|.+. |+.. |+..|+|||.+|||++++. ++++++++||+|+++.++ +
T Consensus 286 ~~~~I~~~al~~L~---~~gI~~--v~~v--------~k~~le~ia~~tGa~iis~--l~~l~~~~LG~a~~v~~~~ig~ 350 (543)
T 3ruv_A 286 CQKGIDDLAQHYLA---KEGIVA--ARRV--------KKSDMEKLAKATGANVIAA--IAALSAQDLGDAGLVEERKISG 350 (543)
T ss_dssp ESSCBCHHHHHHHH---HTTCEE--ECSC--------CHHHHHHHHHHHCCCEESC--GGGCCGGGCEEEEEEEEEEETT
T ss_pred EeCCccHHHHHHHH---HcCcEE--EeeC--------CHHHHHHHHHHhCCceecc--cccCCHHHCCcccEEEEEEeCC
Confidence 99999999999997 366543 4433 4778999999999999986 678889999999999988 8
Q ss_pred CceEEEcCCCChH
Q 031820 132 TRWLSLVGLVASL 144 (152)
Q Consensus 132 d~T~il~g~g~~~ 144 (152)
++++++.|.+++.
T Consensus 351 ~~~~~i~g~~~~~ 363 (543)
T 3ruv_A 351 DSMIFVEECKHPK 363 (543)
T ss_dssp EEEEEEECCSSCS
T ss_pred ceEEEEECCCCCc
Confidence 9999999877654
No 17
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=99.80 E-value=6.7e-20 Score=164.93 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=104.6
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecc-------------cccchHH-----------HHHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILEN-------------MIVSKNI-----------VEQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~-------------kIs~~~~-----------ilp~L--~~~~~rpLlI 54 (152)
|.|||||+|||| ..+++||+||++|. +|+++++ +.|.+ +.+.+.||||
T Consensus 226 ~v~dk~~~~~~m------~~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI 299 (553)
T 3ko1_A 226 IVVDKEVVHPGM------PKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVII 299 (553)
T ss_dssp EEECSCBSCTTS------CSCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEecccccCCCC------ccccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 689999999998 23589999999999 7899998 55666 7888999999
Q ss_pred EecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---C
Q 031820 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ---M 131 (152)
Q Consensus 55 iAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt---k 131 (152)
++++|+++||..|+ .+|.+. |+.. |+..|+|||.+|||++++. ++++++++||+|+++.+. +
T Consensus 300 ~~~~I~~~al~~L~---~~gI~~--v~~v--------~k~~leria~~tGa~ivs~--l~~l~~~~LG~a~~v~~~~ig~ 364 (553)
T 3ko1_A 300 CQKGIDEVAQSYLA---KKGVLA--VRRA--------KKSDLEKLARATGGRVVSN--IDEISEQDLGYASLIEERKVGE 364 (553)
T ss_dssp CSSCBCSHHHHHHH---HHTCEE--ECCC--------CHHHHHHHHTTTTCCEESC--GGGCCSSSSEECSEEECCCCSS
T ss_pred eccChHHHHHHHHH---hcchhh--hhhh--------hhhhHHHHHHhhCCeeecc--cccCChhhcchHHHHHHhhcCc
Confidence 99999999999997 356543 4443 4678999999999999985 678889999999999988 8
Q ss_pred CceEEEcCCCChH
Q 031820 132 TRWLSLVGLVASL 144 (152)
Q Consensus 132 d~T~il~g~g~~~ 144 (152)
++++++.|.+++.
T Consensus 365 d~~~~i~g~~~~~ 377 (553)
T 3ko1_A 365 DKMVFVEGAKNPK 377 (553)
T ss_dssp SCCEEEESCSSSS
T ss_pred ceEEEeccCCCCc
Confidence 9999999877654
No 18
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=99.77 E-value=1.7e-19 Score=163.76 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecc-----c--------ccchHHHHHHH-H------------hhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILEN-----M--------IVSKNIVEQAI-A------------QADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~-----k--------Is~~~~ilp~L-~------------~~~~rpLlI 54 (152)
|.||+|+ +++ +|..+++||+||++|. | |++++++.|++ . .+ .+|+||
T Consensus 223 mvfdk~~-----~~~-~m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~-~g~~vI 295 (590)
T 3p9d_C 223 VLLNKDV-----VHP-KMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILA-VRPTLV 295 (590)
T ss_dssp EEECCCC-----SCT-TSCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHT-TCCSEE
T ss_pred EEEeccc-----CCC-CCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcEE
Confidence 4566663 444 6888999999999999 5 67788888877 2 23 369999
Q ss_pred Eecc-cccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCce-eeEEE---E
Q 031820 55 VAED-VEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS-CKELL---Y 129 (152)
Q Consensus 55 iAed-v~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~-a~~v~---v 129 (152)
||++ |+++||..|+-|+ .+ .||+.|++.|+|||++|||++++. ++++++++||+ |+++. +
T Consensus 296 I~e~~I~d~Al~~L~k~~----------I~---av~~~~k~~le~ia~~TGa~iis~--l~~~~~~~LG~~a~~v~~~~i 360 (590)
T 3p9d_C 296 ITEKGVSDLAQHYLLKGG----------CS---VLRRVKKSDNNRIARVTGATIVNR--VEDLKESDVGTNCGLFKVEMI 360 (590)
T ss_dssp CCSSCCCTHHHHHHHHTT----------CC---CCCCCCHHHHHHHHHHHTCCCCSC--STTCCTTSCBCCCSEEECCEE
T ss_pred EecCCcCHHHHHHHHhcc----------ce---eeccCCHHHHHHHHHHhCCceeec--ccCCCHHHhCCcCCEEEEEEE
Confidence 9999 9999999998764 24 678889999999999999999985 78899999999 99995 6
Q ss_pred eCCceEEEcCCCChHh
Q 031820 130 QMTRWLSLVGLVASLL 145 (152)
Q Consensus 130 tkd~T~il~g~g~~~~ 145 (152)
++|+|+++.|.+++..
T Consensus 361 g~d~~~~i~g~~~~~~ 376 (590)
T 3p9d_C 361 GDEYFSFLDNCKEPGS 376 (590)
T ss_dssp TTEECEEECC------
T ss_pred cCcEEEEEeCCCCccc
Confidence 8899999999988887
No 19
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=99.76 E-value=9.8e-19 Score=155.80 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=100.8
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecc--------------cccchHHHHH-----------HH--HhhcCCCeE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILEN--------------MIVSKNIVEQ-----------AI--AQADSRPLL 53 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~--------------kIs~~~~ilp-----------~L--~~~~~rpLl 53 (152)
|.||+||.+| |..+++||+||++|. +|++++++.| .+ +.+.++||+
T Consensus 205 ~v~dk~~~~~-------m~~~~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vv 277 (513)
T 3iyg_B 205 FLLDKKIGVN-------QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCF 277 (513)
T ss_pred EEEeccccCC-------CceeecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 6899999888 567899999999998 7999999987 45 788899999
Q ss_pred EEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE---E
Q 031820 54 IVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---Y 129 (152)
Q Consensus 54 IiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---v 129 (152)
|++++|+++||..|.- .+++ ||.| +|. .|+|||.+|||++++. ++++++++||+|+++. +
T Consensus 278 i~~~~I~~~al~~L~~------~~I~av~~~---~~~-----~le~ia~~tGa~ii~~--l~~l~~~~LG~a~~v~~~~i 341 (513)
T 3iyg_B 278 INRQLIYNYPEQLFGA------AGVMAIEHA---DFV-----GVERLALVTGGEIAST--FDHPELVKLGSCKLIEEVMI 341 (513)
T ss_pred EEcCCccHHHHHHHHH------cCceEEecC---CHH-----HHHHHHHHhCCEEecc--cccCCHhHCCcccEEEEEEE
Confidence 9999999999998874 4567 9999 774 4899999999999985 6788899999999998 6
Q ss_pred eCCceEEEcCC
Q 031820 130 QMTRWLSLVGL 140 (152)
Q Consensus 130 tkd~T~il~g~ 140 (152)
..++++++.|.
T Consensus 342 g~~~~~~~~g~ 352 (513)
T 3iyg_B 342 GEDKLIHFSGV 352 (513)
T ss_pred CCeEEEEEecC
Confidence 67777766653
No 20
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.76 E-value=6.7e-19 Score=157.10 Aligned_cols=122 Identities=11% Similarity=0.133 Sum_probs=101.6
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecccc-------------------------------cchHHHHHHH--H-h
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMI-------------------------------VSKNIVEQAI--A-Q 46 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kI-------------------------------s~~~~ilp~L--~-~ 46 (152)
|.||+||+||| |..+++||+||++|.++ +.+++|+|++ + .
T Consensus 202 ~v~dk~~~~p~------m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~ 275 (517)
T 3iyg_Z 202 LVLDHGARHPD------MKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCG 275 (517)
T ss_pred EEEeccCCCCC------ccccccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 68999999998 46689999999999987 4578888888 3 4
Q ss_pred hcCCCeEEEe-cccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCC-Ccee
Q 031820 47 ADSRPLLIVA-EDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLM-LGSC 124 (152)
Q Consensus 47 ~~~rpLlIiA-edv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~-LG~a 124 (152)
+.++|||||+ ++|+++|+..|..| |.+. |+.. ++..|+|||.+|||++++. ++++++++ ||+|
T Consensus 276 ~~~~~lvIi~~~~I~d~al~~L~~~---gI~~--v~~v--------~~~~leria~~tGa~iv~~--l~~l~~~~~LG~a 340 (517)
T 3iyg_Z 276 DSDKGFVVINQKGIDPFSLDALAKE---GIIA--LRRA--------KRRNMERLTLACGGIALNS--LDDLNPDCLLGHA 340 (517)
T ss_pred ccCCceEEEecccCCHHHHHHHHHC---CCEE--EEec--------CHHHHHHHHHHhCCEEecc--hhhCcccccCCcc
Confidence 5689999998 89999999999875 4332 5655 1456999999999999985 77888999 9999
Q ss_pred eEE---EEeCCceEEEcCCCChH
Q 031820 125 KEL---LYQMTRWLSLVGLVASL 144 (152)
Q Consensus 125 ~~v---~vtkd~T~il~g~g~~~ 144 (152)
+ + .+.+++++++.|.+++.
T Consensus 341 ~-v~e~~ig~~~~~~~~g~~~~~ 362 (517)
T 3iyg_Z 341 G-VYEYTLGEEKFTFIEKCNNPR 362 (517)
T ss_pred e-EEEEEEcCceEEEEeCCCCch
Confidence 9 9 88999999998876653
No 21
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=99.75 E-value=1.8e-18 Score=154.62 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=94.9
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccccc-------------chHH-----------HHHHH--HhhcCCCeEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIV-------------SKNI-----------VEQAI--AQADSRPLLI 54 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs-------------~~~~-----------ilp~L--~~~~~rpLlI 54 (152)
|.||+||+|||| |..+++||+||++|.+++ +.++ +.|.+ +.+.+.||||
T Consensus 213 ~v~dk~~~~~~~-----m~~~ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi 287 (528)
T 3p9d_D 213 VVLTQTAIKSAG-----GPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLL 287 (528)
T ss_dssp CBCCCCCCCSSS-----CCSEESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEeecccCccc-----CcccccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 789999999998 667899999999999987 5554 78888 8899999999
Q ss_pred Eeccc-----ccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE
Q 031820 55 VAEDV-----EDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL 128 (152)
Q Consensus 55 iAedv-----~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~ 128 (152)
++++| +++||..|+.|+ ++ |+-+ |+..|+|||.+|||+++++ ++++++++||+|+++.
T Consensus 288 ~~~~I~~~a~~~~al~~L~~~~------I~av~~~--------~k~~le~ia~~tGa~ii~~--~~~l~~~~LG~a~~v~ 351 (528)
T 3p9d_D 288 IQKSILRDAVNDLALHFLSKLN------IMVVKDI--------EREEIEFLSKGLGCKPIAD--IELFTEDRLDSADLVE 351 (528)
T ss_dssp ESSCSCTTSCSCHHHHHHTTTS------CCEEECC--------CTHHHHHHHHHHTCCCCSC--STTCCSSSEEEESCEE
T ss_pred EeCCcccccCCHHHHHHHHHcC------cEEEEeC--------CHHHHHHHHHHHCCEEecc--cccCCHHHCCcccEEE
Confidence 99999 888888888775 44 7866 3667999999999999987 4778899999999998
Q ss_pred Ee
Q 031820 129 YQ 130 (152)
Q Consensus 129 vt 130 (152)
++
T Consensus 352 ~~ 353 (528)
T 3p9d_D 352 EI 353 (528)
T ss_dssp CC
T ss_pred EE
Confidence 77
No 22
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.74 E-value=2.1e-18 Score=153.77 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=105.4
Q ss_pred CccCCcccc--ccc-cCCCC--ceEEeeCceEEEecc--cccchH-----------HHHHHH--HhhcCCCeEEE-----
Q 031820 1 MKLKWRPVS--SYF-TNQKA--KDCVLENPFLLILEN--MIVSKN-----------IVEQAI--AQADSRPLLIV----- 55 (152)
Q Consensus 1 m~fdrGylS--pyf-td~~~--~~~ele~p~ILltd~--kIs~~~-----------~ilp~L--~~~~~rpLlIi----- 55 (152)
|+||+||.| ||+ +|++- +.+.|++|++. ++. +|++++ .+.|.+ +.+.++||||+
T Consensus 206 ~~~dk~~~~~mp~~i~n~kIlll~~~Le~~k~~-~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~ 284 (518)
T 3iyg_D 206 LVLTQKVANSGITRVEKAKIGLIQFCLSAPKTD-MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSIL 284 (518)
T ss_pred EEEecccccCCCccccCceEEEEEeeccccccc-cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 689999999 999 99887 68999999998 788 688886 478888 88999999999
Q ss_pred ecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeCCce
Q 031820 56 AEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQMTRW 134 (152)
Q Consensus 56 Aedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtkd~T 134 (152)
+++|+++||.+|+.| +++ ||.| +|++ |+|||.+|||+++++ ++++++++||+|+++.+.+..+
T Consensus 285 ~~~I~~~Al~~L~~~------~I~av~~~---~~~~-----le~ia~~tGa~ii~~--l~~l~~~~LG~a~~v~~~~~g~ 348 (518)
T 3iyg_D 285 RDALSDLALHFLNKM------KIMVVKDI---ERED-----IEFICKTIGTKPVAH--VDQFTADMLGSAELAEEVSLNG 348 (518)
T ss_pred ccCcCHHHHHHHHHc------CcEEEecC---CHHH-----HHHHHHHhCCEEecc--cccCCHHHCCcCcEEEEEEeCC
Confidence 999999999999987 356 9999 7754 899999999999988 6788899999999999876433
Q ss_pred ----EEEcCC
Q 031820 135 ----LSLVGL 140 (152)
Q Consensus 135 ----~il~g~ 140 (152)
+++.|.
T Consensus 349 ~~~~~~~~g~ 358 (518)
T 3iyg_D 349 SGKLIKITGC 358 (518)
T ss_pred CceEEEEECC
Confidence 455553
No 23
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=99.73 E-value=1.3e-18 Score=156.09 Aligned_cols=122 Identities=12% Similarity=0.210 Sum_probs=96.2
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEeccccc-------------------------------chHHHHHHH--Hhh
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIV-------------------------------SKNIVEQAI--AQA 47 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs-------------------------------~~~~ilp~L--~~~ 47 (152)
|.||+||.||+ |..+++||+||++|.+++ .+++|+|++ +.+
T Consensus 213 ~v~dk~~~~~~------m~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~ 286 (546)
T 3p9d_F 213 LVLDHGGRHPD------MPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCG 286 (546)
T ss_dssp CEESCCCCSSS------SCSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred EEEeccccccc------CcceecCceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67999999996 567899999999984432 467788877 455
Q ss_pred --cCCCeEEEec-ccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCcee
Q 031820 48 --DSRPLLIVAE-DVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSC 124 (152)
Q Consensus 48 --~~rpLlIiAe-dv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a 124 (152)
+++|+|||++ +|+++||..|+.|++ ++|+.. . +..|+|||.+|||++++. ++++++++||+|
T Consensus 287 ~~~g~~~vIi~~k~I~~~Al~~L~~~gI-----~~vr~v-------~-~~~leria~~tGa~ii~~--l~~l~~~~LG~a 351 (546)
T 3p9d_F 287 MDPDKGFVIINQKGIDPMSLDVFAKHNI-----LALRRA-------K-RRNMERLQLVTGGEAQNS--VEDLSPQILGFS 351 (546)
T ss_dssp ------CEEEESSCCCHHHHHHHTTTTC-----EEECCC-------C-HHHHHHHHHTTTBCCCCC--CSSCSTTCCBCC
T ss_pred hccCCceEEEecCcCcHHHHHHHHHCCC-----eeEecC-------C-HHHHHHHHHHhCCEEecc--hhhCCHhHCCcc
Confidence 7899999997 999999999999975 236766 2 347899999999999985 788999999999
Q ss_pred eEE---EEeCCceEEEcCCCCh
Q 031820 125 KEL---LYQMTRWLSLVGLVAS 143 (152)
Q Consensus 125 ~~v---~vtkd~T~il~g~g~~ 143 (152)
+++ .+++++++++.|.+++
T Consensus 352 ~~v~~~~ig~~~~~~i~g~~~~ 373 (546)
T 3p9d_F 352 GLVYQETIGEEKFTYVTENTDP 373 (546)
T ss_dssp CCBCBCCCSSCCCEECSSCSCC
T ss_pred cEEEEEEecCceEEEEecCCCC
Confidence 999 7899999999887654
No 24
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.72 E-value=6.4e-18 Score=151.03 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=101.6
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEecccc-------------------cchHH-----HHHHH--HhhcCCCeE
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMI-------------------VSKNI-----VEQAI--AQADSRPLL 53 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~kI-------------------s~~~~-----ilp~L--~~~~~rpLl 53 (152)
|.||+||.|||| + .++||+|+++|..+ +++.+ +.|.+ +.+.+.+|+
T Consensus 208 ~v~dk~~~~~~m~~-------~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvv 280 (529)
T 3iyg_A 208 YALNCVVGSQGMPK-------RIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVI 280 (529)
T ss_pred eEEecCcccccCCc-------ccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 689999999999 6 47899999999943 33332 67777 889999999
Q ss_pred EEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec---cc-cCCCCCCCCceeeEEE
Q 031820 54 IVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---AT-NVSFMPLMLGSCKELL 128 (152)
Q Consensus 54 IiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~-l~~~~~~~LG~a~~v~ 128 (152)
|++++|+++||..|+.|+ ++ |+. .|+..|++||.+|||+++++ ++ +++++.++||+|+++.
T Consensus 281 i~~~~I~d~al~~L~~~g------I~av~~--------v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~ 346 (529)
T 3iyg_A 281 LTTGGIDDMCLKYFVEAG------AMAVRR--------VLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVV 346 (529)
T ss_pred EECCCCCHHHHHHHHHcC------Cceecc--------CCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEE
Confidence 999999999999999995 34 553 46778999999999999998 33 4668889999999998
Q ss_pred ---EeCCceEEEcCCCCh
Q 031820 129 ---YQMTRWLSLVGLVAS 143 (152)
Q Consensus 129 ---vtkd~T~il~g~g~~ 143 (152)
+.+++++++.|.+++
T Consensus 347 ~~~ig~~~~~~~~g~~~~ 364 (529)
T 3iyg_A 347 QERICDDELILIKNTKAR 364 (529)
T ss_pred EEEeCCceEEEEEcCCCC
Confidence 889999999886553
No 25
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=99.70 E-value=1.1e-17 Score=150.35 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=99.6
Q ss_pred CccCCccccccc-cCCCCceEEeeCceEEEeccc-------------ccchHHHHHH-----------H--HhhcCCCeE
Q 031820 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENM-------------IVSKNIVEQA-----------I--AQADSRPLL 53 (152)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~ele~p~ILltd~k-------------Is~~~~ilp~-----------L--~~~~~rpLl 53 (152)
|+|||||+|||| +++++ ++||+||++|.+ |++++++.|+ + +.+.+.+|+
T Consensus 218 ~~~dk~~~s~yf~~~~~~----~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vV 293 (550)
T 3p9d_G 218 VAFKKTFSYAGFEQQPKK----FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIV 293 (550)
T ss_dssp EEECCCSSCTTCSCSCSC----CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEE
T ss_pred EEEeccccccccccCccc----ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 689999999999 98886 999999999998 7888888884 4 668899999
Q ss_pred EEecccccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEE---e
Q 031820 54 IVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY---Q 130 (152)
Q Consensus 54 IiAedv~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~v---t 130 (152)
|++++|++ +++..+| .+|.+-+ ++.|+..|++||.+|||++++. +++++.++||+|+++.+ .
T Consensus 294 i~~~~I~d--la~~~L~-~~gI~~v----------~~v~k~~lerIa~~tGa~iis~--l~~l~~~~LG~a~~v~~~~ig 358 (550)
T 3p9d_G 294 LSKLPIGD--LATQFFA-DRNIFCA----------GRVSADDMNRVIQAVGGSIQST--TSDIKPEHLGTCALFEEMQIG 358 (550)
T ss_dssp EESSCCCH--HHHHTTG-GGTCEEE----------ECCCTTHHHHHHHHTCCCCBSS--GGGCCGGGCCCCSBCCCCCCS
T ss_pred EECCCccH--HHHHHHH-HcCCccc----------cCcCHHHHHHHHHHhCCceecc--hhhCCHHHcCCceEEEEEEeC
Confidence 99999986 6666777 4565432 3445678999999999999985 67788899999999987 4
Q ss_pred CCceEEEcCC
Q 031820 131 MTRWLSLVGL 140 (152)
Q Consensus 131 kd~T~il~g~ 140 (152)
+++++++.|.
T Consensus 359 ~e~~~~~~g~ 368 (550)
T 3p9d_G 359 SERYNLFQGC 368 (550)
T ss_dssp SSCCEEEBCC
T ss_pred CeEEEEEecC
Confidence 6777777764
No 26
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=99.67 E-value=2.2e-17 Score=147.44 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=98.2
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEe------------ccc--ccchHHH-----------HHHH--HhhcCCCeE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLIL------------ENM--IVSKNIV-----------EQAI--AQADSRPLL 53 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILlt------------d~k--Is~~~~i-----------lp~L--~~~~~rpLl 53 (152)
|+|||||.||| +++ ++||+||++ +.+ |++++++ +|.+ +.+.|.||+
T Consensus 212 ~~~dk~~~~~~---p~~----~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vv 284 (527)
T 3p9d_B 212 FILAKKFGNNQ---PKR----IENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTF 284 (527)
T ss_dssp CCCSCCCSSSC---CSC----CSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEE
T ss_pred EEEecccCCCC---Cee----eecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 78999999998 454 368888885 444 7788876 5677 788999999
Q ss_pred EEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEE---E
Q 031820 54 IVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---Y 129 (152)
Q Consensus 54 IiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~---v 129 (152)
|++++|+++||.+|..|+ ++ |+.| +|++ |++||.+|||++++. +++++.+.||+|+++. +
T Consensus 285 i~~~~I~~~al~~L~~~~------i~av~~~---~~~d-----le~ia~~tGa~iv~~--~~~~~~~~LG~a~~v~~~~i 348 (527)
T 3p9d_B 285 INRQLIYDYPEQLFTDLG------INSIEHA---DFEG-----VERLALVTGGEVVST--FDEPSKCKLGECDVIEEIML 348 (527)
T ss_dssp ESSCCCTTTHHHHHHHTC------BCCCCCC---HHHH-----HHHHHHHTCCCCCST--TSCCTTSCEECSBCCBCCCS
T ss_pred EECCCCCHHHHHHHHHCC------CEEEecC---CHHH-----HHHHHHHhCCEEecc--hhhCCHHHCCCCcEEEEEEe
Confidence 999999999999999885 45 9999 7776 899999999999987 6778889999999998 6
Q ss_pred eCCceEEEcCC
Q 031820 130 QMTRWLSLVGL 140 (152)
Q Consensus 130 tkd~T~il~g~ 140 (152)
.+++++++.|.
T Consensus 349 g~~~~~~~~g~ 359 (527)
T 3p9d_B 349 GEQPFLKFSGC 359 (527)
T ss_dssp SSCCBCCBCSS
T ss_pred cceEEEEEECC
Confidence 67777777663
No 27
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.66 E-value=1.4e-16 Score=141.77 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=97.7
Q ss_pred CccCCccccccc-cCCC-CceEEeeCce-EEEeccc----ccchHHHHHH-------H------HhhcCCCeEEEecccc
Q 031820 1 MKLKWRPVSSYF-TNQK-AKDCVLENPF-LLILENM----IVSKNIVEQA-------I------AQADSRPLLIVAEDVE 60 (152)
Q Consensus 1 m~fdrGylSpyf-td~~-~~~~ele~p~-ILltd~k----Is~~~~ilp~-------L------~~~~~rpLlIiAedv~ 60 (152)
|+|||||.| | ++.+ .+.+.|+.|| ++.+|.| |+++++++|+ | +.+.|+||+|++++|+
T Consensus 205 ~~~dk~~~~--~~~~~~n~kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~ 282 (512)
T 3iyg_Q 205 MVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVA 282 (512)
T ss_pred EEEecCcCC--CCcccccCceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 689999987 8 8777 6778899999 9999999 9999999998 5 5678999999999998
Q ss_pred cchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEeCC
Q 031820 61 DKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQMT 132 (152)
Q Consensus 61 ~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vtkd 132 (152)
+.++. .+|+ .+++ ||.| +|++ |+|||.+|||++++. ++++++++||+|+++.+++.
T Consensus 283 ~la~~--~l~k----~~I~av~~~---~~~d-----le~ia~~tGa~iis~--l~~~~~~~LG~a~~v~~~~~ 339 (512)
T 3iyg_Q 283 DMALH--YANK----YNIMLVRLN---SKWD-----LRRLCKTVGATALPR--LNPPVLEEMGHCDSVYLSEV 339 (512)
T ss_pred HHHHH--HHHH----CCeEEEEeC---CHHH-----HHHHHHHhCCEEecc--cccCCHHHCCcccEEEEEEe
Confidence 85544 3343 5678 9999 8876 899999999999985 77888999999999988754
No 28
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.65 E-value=1.9e-16 Score=141.15 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=99.1
Q ss_pred CccCCccccccccCCCCceEEeeCceEEEecc-------------cccchHHHHHHH-H-----------hhcCCCeEEE
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILEN-------------MIVSKNIVEQAI-A-----------QADSRPLLIV 55 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele~p~ILltd~-------------kIs~~~~ilp~L-~-----------~~~~rpLlIi 55 (152)
|.||+||.||+ |..+++||+||++|. +|++++++.|++ . ....+|.|||
T Consensus 206 ~v~dk~~~~~~------m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi 279 (515)
T 3iyg_G 206 VMINKDVTHPR------MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVI 279 (515)
T ss_pred EEEeCCCCCCC------CcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 68999999996 567899999999999 999999999998 1 1235799999
Q ss_pred ecc-cccchhhhhhcccccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCce-eeEEEEeCC-
Q 031820 56 AED-VEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS-CKELLYQMT- 132 (152)
Q Consensus 56 Aed-v~~eaL~tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~-a~~v~vtkd- 132 (152)
+++ |++.|+..|.- ..++ .+++.|+..|+|||.+|||+++++ ++++++++||+ |+.+.+++.
T Consensus 280 ~~~~I~~~al~~L~~------~~I~-------av~~~~k~~leria~~tGa~ii~~--l~~l~~~~LG~~a~~v~~~~~g 344 (515)
T 3iyg_G 280 TEKGISDLAQHYLMR------ANIT-------AIRRVRKTDNNRIARACGARIVSR--PEELREEDVGTGAGLLEIKKIG 344 (515)
T ss_pred ECCccCHHHHHHHHH------CCce-------eeccCCHHHHHHHHHHhCCeeecc--ccccChhhcCCcccEEEEEEEC
Confidence 996 88888887652 2233 346778899999999999999987 67888999999 999998875
Q ss_pred --ceEEEcCCCCh
Q 031820 133 --RWLSLVGLVAS 143 (152)
Q Consensus 133 --~T~il~g~g~~ 143 (152)
+++++.|.+++
T Consensus 345 ~~~~~~i~g~~~~ 357 (515)
T 3iyg_G 345 DEYFTFITECKDP 357 (515)
T ss_pred CceEEEEeCCCCC
Confidence 57777775543
No 29
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=99.52 E-value=3.6e-15 Score=134.46 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=95.5
Q ss_pred CccCCccccccccCCCCceEEee---CceEEEeccc-------------ccchHHHHH-----------HH--HhhcCCC
Q 031820 1 MKLKWRPVSSYFTNQKAKDCVLE---NPFLLILENM-------------IVSKNIVEQ-----------AI--AQADSRP 51 (152)
Q Consensus 1 m~fdrGylSpyftd~~~~~~ele---~p~ILltd~k-------------Is~~~~ilp-----------~L--~~~~~rp 51 (152)
|.|||||. .|..+++ ||+||++|.+ |++.+++.| .+ +.+.+.|
T Consensus 226 ~v~dk~~~--------~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~ 297 (568)
T 3p9d_H 226 MVFNREPE--------GHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVE 297 (568)
T ss_dssp CCBSSCBS--------SGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEeeccc--------CCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 56777772 4556677 9999999998 889999988 45 6788999
Q ss_pred eEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe
Q 031820 52 LLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ 130 (152)
Q Consensus 52 LlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt 130 (152)
|||++++|+++|+..|+-|+ ++ |+.| ++ ..|++||.+|||+++++ ++++++++||+|+++.+.
T Consensus 298 vvi~~~~I~~~al~~L~~~g------I~av~~v---~~-----~~leria~~tGa~ivs~--l~~l~~~~LG~a~~v~~~ 361 (568)
T 3p9d_H 298 CIVAGAGVGELALHYLNRYG------ILVLKVP---SK-----FELRRLCRVCGATPLPR--LGAPTPEELGLVETVKTM 361 (568)
T ss_dssp EEEECSCCCHHHHHHHHHHT------CEEECCC---CH-----HHHHHHHHHHSCCCCSS--SSCCCGGGCEECSCCCCC
T ss_pred EEEECCCcChHHHHHHHHCC------eEEEecC---CH-----HHHHHHHHHhCCEEEec--cccCCHHHCCcceEEEEE
Confidence 99999999999999998763 56 9999 64 35999999999999987 677889999999999877
Q ss_pred C---CceEEEcCC
Q 031820 131 M---TRWLSLVGL 140 (152)
Q Consensus 131 k---d~T~il~g~ 140 (152)
+ ++++++.|.
T Consensus 362 ~ig~~~~~~~~g~ 374 (568)
T 3p9d_H 362 EIGGDRVTVFKQE 374 (568)
T ss_dssp EETTEECBCCCCC
T ss_pred EecCceEEEEecC
Confidence 6 555555553
No 30
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=97.91 E-value=5.6e-05 Score=57.85 Aligned_cols=110 Identities=14% Similarity=0.213 Sum_probs=78.4
Q ss_pred ceEEeeCceEEEeccccc-------------chHHHHHHH-------------HhhcCCCeEEEecccccchhhhhhccc
Q 031820 18 KDCVLENPFLLILENMIV-------------SKNIVEQAI-------------AQADSRPLLIVAEDVEDKLIGSLILGK 71 (152)
Q Consensus 18 ~~~ele~p~ILltd~kIs-------------~~~~ilp~L-------------~~~~~rpLlIiAedv~~eaL~tLv~Nk 71 (152)
|.-.++||.|++.+-.++ +.+++..++ +.+.|--+++.-..|++.|+.-|.-+.
T Consensus 15 mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~g 94 (159)
T 1ass_A 15 MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEG 94 (159)
T ss_dssp SCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTT
T ss_pred CCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCccCHHHHHHHHHCC
Confidence 455678999999987554 455555444 455677788888899999888765442
Q ss_pred ccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCceeeEEEEe---CCceEEEcCCCC
Q 031820 72 TCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ---MTRWLSLVGLVA 142 (152)
Q Consensus 72 lrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~a~~v~vt---kd~T~il~g~g~ 142 (152)
+-+ |+-. . +.-|+-||-.|||++++. +++++.+.||+|..+... .++.+++.|..+
T Consensus 95 ----I~~-v~~v---~-----~~dleria~atGa~iv~~--~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 95 ----IYA-VRRV---K-----KSDMEKLAKATGAKIVTD--LDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153 (159)
T ss_dssp ----CEE-ECSC---C-----HHHHHHHHHHHTCCCBSS--TTSCCTTSCEEEEEEEEEEETTEEEEEEESCC-
T ss_pred ----CEE-EccC---C-----HHHHHHHHHHhCCeeeCc--cccCCcccCccceEEEEEEECCeEEEEEECCCC
Confidence 333 3333 1 345789999999999987 567788999999998765 467888877543
No 31
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=97.33 E-value=0.00072 Score=52.36 Aligned_cols=108 Identities=11% Similarity=0.128 Sum_probs=71.7
Q ss_pred CceEEeeCceEEEeccccc-------------chHHHHHHH-------------HhhcCCCeEEEecccccchhhhhhcc
Q 031820 17 AKDCVLENPFLLILENMIV-------------SKNIVEQAI-------------AQADSRPLLIVAEDVEDKLIGSLILG 70 (152)
Q Consensus 17 ~~~~ele~p~ILltd~kIs-------------~~~~ilp~L-------------~~~~~rpLlIiAedv~~eaL~tLv~N 70 (152)
.|.-.++||.|++.+-.++ +.+++-.++ +.+.|--+++.-..|++.|+.-|.-+
T Consensus 20 ~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~ 99 (178)
T 1gml_A 20 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRA 99 (178)
T ss_dssp TSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHT
T ss_pred CCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHHHHHHHHHC
Confidence 3555678999999887555 233333333 45567778888889999998877544
Q ss_pred cccccceEEEecCCCCCchhhHhhhhhhhhhhhcCeEeeccccCCCCCCCCce-eeEEEEe---CCceEEEcC
Q 031820 71 KTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS-CKELLYQ---MTRWLSLVG 139 (152)
Q Consensus 71 klrg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~~~~~~LG~-a~~v~vt---kd~T~il~g 139 (152)
. +-+ |+-. ++.-|+-||-.|||++++. +++++.+.||+ |+.+... .++.+++.|
T Consensus 100 g----I~~-vr~v--------~~~dleria~atGa~iv~~--~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~g 157 (178)
T 1gml_A 100 N----VTA-IRRV--------RKTDNNRIARACGARIVSR--PEELREDDVGTGAGLLEIKKIGDEYFTFITD 157 (178)
T ss_dssp T----CEE-ECCC--------CHHHHHHHHHHHCCCEESC--GGGCCGGGSBCCEEEEEEEEETTEEEEEEEE
T ss_pred C----CEE-EecC--------CHHHHHHHHHHhCCeEeCC--hhhCChhhhCCcccEEEEEEECCeEEEEEEC
Confidence 3 223 3333 1335789999999999987 45677889999 8888743 244444444
No 32
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=40.54 E-value=6.1 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.3
Q ss_pred CchhhHhhhhhhhhhhhcCeEeeccc
Q 031820 87 DYEKETKAIMDDLAILTGGQVLNGAT 112 (152)
Q Consensus 87 gfG~~rk~~L~DiAilTGg~vi~~~~ 112 (152)
+.|..|++.|..+|.--|++|...++
T Consensus 22 kmG~sRr~fL~~la~~kGf~v~~~~S 47 (133)
T 2dun_A 22 RMGRSRRAFLTGLARSKGFRVLDACS 47 (133)
T ss_dssp HHCSHHHHHHHHHHHHHTEEECSSCC
T ss_pred CcCHHHHHHHHHHHHhcCCEeccccC
Confidence 88999999999999999999987733
No 33
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=31.03 E-value=20 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=43.1
Q ss_pred ccCCccccccccCCCCceEEeeCceEEEecccccchHHHHHHH---HhhcC-CCeEEEecccccchhhhhhccccc----
Q 031820 2 KLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAI---AQADS-RPLLIVAEDVEDKLIGSLILGKTC---- 73 (152)
Q Consensus 2 ~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L---~~~~~-rpLlIiAedv~~eaL~tLv~Nklr---- 73 (152)
.+-.|..||||-|. + .+.+|-. .+.+...+ +...+ .+=+|++-+..|-.+++.+..++.
T Consensus 49 ~L~SG~~Sp~y~d~-~---ll~~p~~---------l~~l~~~la~~i~~~~~~~D~Vvg~~~gGi~~A~~lA~~L~~~~g 115 (238)
T 3n2l_A 49 TLKSGRKSPYFFNA-G---LFNTGRD---------LARLGRFYAAALVDSGIEFDVLFGPAYKGIPIATTTAVALADHHD 115 (238)
T ss_dssp ECSSSCEEEEEECG-G---GCCBHHH---------HHHHHHHHHHHHHHHTCCCSEEEECTTTHHHHHHHHHHHHHHHSC
T ss_pred EecCCCcccEEEEC-C---CCCCHHH---------HHHHHHHHHHHHHhhCCCCCEEEecccChHHHHHHHHHHHhHhhC
Confidence 45689999999332 1 1233321 23344444 22323 578999999999999999988762
Q ss_pred ccceEE-EecC
Q 031820 74 LQNKVS-IAKP 83 (152)
Q Consensus 74 g~l~v~-VkaP 83 (152)
-.++++ ++-+
T Consensus 116 ~~vp~~~~RK~ 126 (238)
T 3n2l_A 116 VDTPYCFNRKE 126 (238)
T ss_dssp CCCBEEEECCC
T ss_pred CCccEEEEeec
Confidence 246677 6543
No 34
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=29.68 E-value=27 Score=26.25 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=26.1
Q ss_pred hhhcccccccceEEEecCCCCCchhhHhhhhhhhhh
Q 031820 66 SLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAI 101 (152)
Q Consensus 66 tLv~Nklrg~l~v~VkaP~~~gfG~~rk~~L~DiAi 101 (152)
.+++|+-.+ ++|.+-+- +|=++|++.|+.+|.
T Consensus 63 ~~~vn~~~~-~~V~LDve---~YRerReetL~~lA~ 94 (152)
T 2pt7_G 63 FNWIHPTYG-YSIRLEIS---TFLQNQEKVMDTQLQ 94 (152)
T ss_dssp HHHHHHHHS-CEEEEEET---THHHHHHHHHHHHHH
T ss_pred HHHhhhcCC-ceEEEEhH---HhHHHHHHHHHHHHH
Confidence 356888766 66668788 999999999999984
No 35
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.02 E-value=34 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=23.2
Q ss_pred CchhhHhhhhhhhhhhhcCeEeecc
Q 031820 87 DYEKETKAIMDDLAILTGGQVLNGA 111 (152)
Q Consensus 87 gfG~~rk~~L~DiAilTGg~vi~~~ 111 (152)
+.|..|.+++..+|...|++|.+.+
T Consensus 32 ~~g~~R~~~l~~l~r~~G~~V~~~l 56 (120)
T 2coe_A 32 KMGTTRRALLMELARRKGFRVENEL 56 (120)
T ss_dssp TTCHHHHHHHHHHHHHHTCEECSSC
T ss_pred ccchHHHHHHHHHHHHcCCEEeecc
Confidence 8999999999999999999999764
No 36
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=26.55 E-value=1.5e+02 Score=22.62 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=44.4
Q ss_pred eCceEEEecccccchHHHHHHHHhhcCCCeEEEeccc-----ccchhhh-hhcccccccceEE----EecCCCCCchhhH
Q 031820 23 ENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDV-----EDKLIGS-LILGKTCLQNKVS----IAKPHEDDYEKET 92 (152)
Q Consensus 23 e~p~ILltd~kIs~~~~ilp~L~~~~~rpLlIiAedv-----~~eaL~t-Lv~Nklrg~l~v~----VkaP~~~gfG~~r 92 (152)
.|.-+.++..+.+.--.+--.++.+.+||+++|=-+- ..+.+.. |..|+++ +|+|+ =++| |-+..-
T Consensus 74 SDgTLI~~~g~lsGGT~lT~~~a~~~~KP~l~i~l~~~~~~~~~~~v~~wl~~~~i~-vLNVAGPReS~~P---gI~~~~ 149 (158)
T 3imk_A 74 SDGTLIISHGILKGGSALTEFFAEQYKKPCLHIDLDRISIEDAATLINSWTVSHHIQ-VLNIAGPRAGKDP---EIYQAT 149 (158)
T ss_dssp SSEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEETTTSCHHHHHHHHHHHHHHTTCC-EEEEECCCTTTCT---THHHHH
T ss_pred cCeEEEEecCCCCCchHHHHHHHHHhCCCEEEEecccccccchHHHHHHHHHHCCce-EEEeccCcccCCC---CHHHHH
Confidence 3444555545566554444333889999999985443 1122223 4445554 68888 6778 888877
Q ss_pred hhhhhhh
Q 031820 93 KAIMDDL 99 (152)
Q Consensus 93 k~~L~Di 99 (152)
++.|+.+
T Consensus 150 ~~~L~~~ 156 (158)
T 3imk_A 150 MDLLEVF 156 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 37
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=25.28 E-value=18 Score=28.67 Aligned_cols=64 Identities=8% Similarity=0.084 Sum_probs=36.4
Q ss_pred cCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH---Hhhc-CCCeEEEecccccchhhhhhcccccccce
Q 031820 3 LKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI---AQAD-SRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 3 fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L---~~~~-~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
+-.|..|||| ... ..+.+|- -.+.+...| +... ..+-+|++-+-.+-.+++.+..++. ++
T Consensus 49 l~SG~~Sp~Y~d~~----~~~~~p~---------~~~~l~~~la~~i~~~~~~~D~Ivg~~~gGi~~a~~lA~~L~--~p 113 (234)
T 3m3h_A 49 WSSGMKSPIYCDNR----LTLSYPK---------VRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMD--LP 113 (234)
T ss_dssp CTTSCEESEEECGG----GGGGCHH---------HHHHHHHHHHHHHHHHCTTCCEEEEC---CHHHHHHHHHHHT--CC
T ss_pred cCcCCcCCEEEeCH----HhccCHH---------HHHHHHHHHHHHHHHhCCCCCEEEEeccchHHHHHHHHHHcC--CC
Confidence 4588899998 433 1233331 122344444 2222 2577899999999999998888774 44
Q ss_pred EE-Ee
Q 031820 78 VS-IA 81 (152)
Q Consensus 78 v~-Vk 81 (152)
.+ ++
T Consensus 114 ~~~vr 118 (234)
T 3m3h_A 114 MCYVR 118 (234)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 55 44
No 38
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=25.15 E-value=27 Score=23.00 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=20.5
Q ss_pred hhcC-CCeEEEecccccchhhhhhcccccccceEE
Q 031820 46 QADS-RPLLIVAEDVEDKLIGSLILGKTCLQNKVS 79 (152)
Q Consensus 46 ~~~~-rpLlIiAedv~~eaL~tLv~Nklrg~l~v~ 79 (152)
.+.+ .-|+|||+|++++....+..-=....++++
T Consensus 23 i~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~ 57 (82)
T 3v7e_A 23 LKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVS 57 (82)
T ss_dssp HTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEE
T ss_pred HHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444 589999999999655443221122346665
No 39
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=23.23 E-value=24 Score=28.13 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=37.5
Q ss_pred cCCccccccc-cCCCCceEEeeCceEEEecccccchHHHHHHH---Hhhc-CCCeEEEecccccchhhhhhcccccccce
Q 031820 3 LKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI---AQAD-SRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (152)
Q Consensus 3 fdrGylSpyf-td~~~~~~ele~p~ILltd~kIs~~~~ilp~L---~~~~-~rpLlIiAedv~~eaL~tLv~Nklrg~l~ 77 (152)
+-.|..|||| ... ..+.+|-+ .+.+...| +... ..+=+|++-+..+=.+++.+..++. ++
T Consensus 61 L~SG~~Sp~Y~d~~----~~l~~p~~---------~~~l~~~la~~i~~~~~~~DvIvg~~~gGi~~A~~lA~~L~--~p 125 (243)
T 3dez_A 61 WASGIKSPIYTDNR----ITLSYPET---------RTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMN--LP 125 (243)
T ss_dssp C---CEESEEECTT----GGGGCHHH---------HHHHHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTT--CC
T ss_pred eCCCCCCCEEEeCH----HhccCHHH---------HHHHHHHHHHHHHhhCCCCCEEEEecCchHHHHHHHHHHcC--CC
Confidence 3478999988 543 23344421 22333333 2222 2577999999999999998888875 44
Q ss_pred EE-Eec
Q 031820 78 VS-IAK 82 (152)
Q Consensus 78 v~-Vka 82 (152)
.+ ++.
T Consensus 126 ~~~vrk 131 (243)
T 3dez_A 126 LAYIRS 131 (243)
T ss_dssp EEEECS
T ss_pred EEEEEE
Confidence 45 443
No 40
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=23.10 E-value=94 Score=21.46 Aligned_cols=61 Identities=7% Similarity=0.046 Sum_probs=41.3
Q ss_pred hcCCCeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec
Q 031820 47 ADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG 110 (152)
Q Consensus 47 ~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~ 110 (152)
..-+|.+-|+.+==.|++-.=+-+.++. =..+ ||... ...+.|+++.+.||-.|||.++..
T Consensus 16 h~l~pvv~IGk~GlT~~vi~ei~~aL~~-~ELIKVkvl~--~~~~~~~e~a~~la~~t~a~~Vq~ 77 (98)
T 1jo0_A 16 HHLNPVVMLGGNGLTEGVLAEIENALNH-HELIKVKVAG--ADRETKQLIINAIVRETKAAQVQT 77 (98)
T ss_dssp TTBCCSEEECTTCSCHHHHHHHHHHHHH-HSEEEEEETT--CCHHHHHHHHHHHHHHHCCEEEEE
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH-CCeEEEEEeC--CCHHHHHHHHHHHHHHhCCEEEEE
Confidence 3347999998765444444344444443 2334 66662 456889999999999999998865
No 41
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=21.86 E-value=22 Score=27.25 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=42.2
Q ss_pred ccCCccccccccCCCCceEEeeCceEEEecccccchHHHHHHH---Hhhc-CCCeEEEecccccchhhhhhcccc----c
Q 031820 2 KLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAI---AQAD-SRPLLIVAEDVEDKLIGSLILGKT----C 73 (152)
Q Consensus 2 ~fdrGylSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L---~~~~-~rpLlIiAedv~~eaL~tLv~Nkl----r 73 (152)
.+.+|.-||||-|. + ++.+.+ ..+.+...| +... ..+-+|++-+..|-.+++.+..++ .
T Consensus 24 ~l~SG~~s~~y~d~-~----------ll~~~~--~~~~~~~~la~~i~~~~~~~d~Ivgv~~~G~~~a~~lA~~L~~~~~ 90 (213)
T 1lh0_A 24 TLKSGRKSPYFFNA-G----------LFNTGR--DLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHD 90 (213)
T ss_dssp ECTTSCEEEEEECG-G----------GCCBHH--HHHHHHHHHHHHHHHHCCCCSEEECCTTTHHHHHHHHHHHHHHHHC
T ss_pred EECCCCcccEEEec-C----------ccCCHH--HHHHHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHHHHHhhC
Confidence 46689999999332 1 122221 234455555 3332 357899999999999999998888 2
Q ss_pred ccceEE-Ee
Q 031820 74 LQNKVS-IA 81 (152)
Q Consensus 74 g~l~v~-Vk 81 (152)
-.++++ ++
T Consensus 91 ~~~~~~~~r 99 (213)
T 1lh0_A 91 KDLPYCFNR 99 (213)
T ss_dssp CCCBEEEEC
T ss_pred CCCCEEEEE
Confidence 246666 55
No 42
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=21.51 E-value=24 Score=26.76 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCeEEEecccccchhhhhhcccccc
Q 031820 50 RPLLIVAEDVEDKLIGSLILGKTCL 74 (152)
Q Consensus 50 rpLlIiAedv~~eaL~tLv~Nklrg 74 (152)
.+.+|++-+-.|-.++..+..++.-
T Consensus 68 ~~d~vv~v~~~g~~~a~~la~~l~~ 92 (211)
T 2aee_A 68 EVEVIAGTATAGIPHGAIIADKMTL 92 (211)
T ss_dssp TCCEEEEETTTTHHHHHHHHHHHTC
T ss_pred CCCEEEEeccCcHHHHHHHHHHhCC
Confidence 5788999999888888888877753
No 43
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=21.12 E-value=86 Score=22.04 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=39.6
Q ss_pred hcCCCeEEEecccccchhhhhhcccccccceEE-EecCCCCCchhhHhhhhhhhhhhhcCeEeec
Q 031820 47 ADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG 110 (152)
Q Consensus 47 ~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~ 110 (152)
..-+|.+-|+.+==.|++-.=+-+.++.. ..+ ||... ..++.|+++.+.||-.|||.++..
T Consensus 15 h~Lkpvv~IGK~GlTe~vi~ei~~aL~~h-ELIKVkvl~--~~~~d~~e~a~~la~~t~a~vVq~ 76 (104)
T 1rq8_A 15 HNIDPIFQIGKGGINENMIKQIDDTLENR-ELIKVHVLQ--NNFDDKKELAETLSEATRSELVQV 76 (104)
T ss_dssp TSSCCSCEECSSSCCHHHHHHHHHHHHHS-SEEEEEECC--CCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHC-CcEEEEEeC--CCHHHHHHHHHHHHHHhCCEEEEE
Confidence 33479999987654343333333444331 233 55552 357889999999999999998865
No 44
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=21.03 E-value=1.3e+02 Score=22.91 Aligned_cols=99 Identities=12% Similarity=0.220 Sum_probs=53.6
Q ss_pred ccccccCCCCceEEeeCceEEEecccccchHHHHHHH--HhhcCCCeEEEecccccchhhhhhcccccccceEE-EecCC
Q 031820 8 VSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPH 84 (152)
Q Consensus 8 lSpyftd~~~~~~ele~p~ILltd~kIs~~~~ilp~L--~~~~~rpLlIiAedv~~eaL~tLv~Nklrg~l~v~-VkaP~ 84 (152)
..||+++ ...++..++|||=.. ..++-++.++ +++. | +..-.+- ++.|+
T Consensus 27 Fg~YL~~-~~~~I~IeDPYIR~~----hQi~NfvrF~Ellvk~--~---------------------~~~~~I~L~T~~d 78 (163)
T 4a5z_A 27 FREYLNE-TVTEVWIEDPYIRHT----HQLYNFLRFCEMLIKR--P---------------------CKVKTIHLLTSLD 78 (163)
T ss_dssp HGGGCCT-TCCEEEEECSCCCSH----HHHHHHHHHHHHHHC-------------------------CCCCEEEEEECCC
T ss_pred HHHHHhC-CceEEEEECCccccH----HHHHHHHHHHHHHHhc--C---------------------CCccEEEEEeCCc
Confidence 4799943 346899999997322 2233444444 2322 1 1111133 77775
Q ss_pred CCCchhhHhhhhhhhhhh--hcCeEeeccccCCCCCCCCceeeEEEEeCCceEEEcCCC
Q 031820 85 EDDYEKETKAIMDDLAIL--TGGQVLNGATNVSFMPLMLGSCKELLYQMTRWLSLVGLV 141 (152)
Q Consensus 85 ~~gfG~~rk~~L~DiAil--TGg~vi~~~~l~~~~~~~LG~a~~v~vtkd~T~il~g~g 141 (152)
++...+.+++.|+.|.-- +.|-.+. ...++ + -..++|..+ +.++|.=|.|
T Consensus 79 ~~~~~~~Q~~~L~~ik~sL~~~gI~l~-~~fs~-t----iHDR~I~~d-nGW~IkiGRG 130 (163)
T 4a5z_A 79 EGIEQVQQSRGLQEIEESLRSHGVLLE-VQYSS-S----IHDREIRFN-NGWMIKIGRG 130 (163)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCEEE-EEECT-T----CCCCEEEET-TSEEEEETTT
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCEEE-EEeCC-C----ccceEEEec-CCeEEEECCC
Confidence 433577888999988643 3343322 22211 1 155666555 7788877766
No 45
>4hwm_A Uncharacterized protein YEDD; YEDD-like protein, PF13987 family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 1.38A {Klebsiella pneumoniae subsp}
Probab=20.36 E-value=21 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=19.7
Q ss_pred ccccchhhhhhcccccccceEE
Q 031820 58 DVEDKLIGSLILGKTCLQNKVS 79 (152)
Q Consensus 58 dv~~eaL~tLv~Nklrg~l~v~ 79 (152)
-|++||+++||+++--.+|.|=
T Consensus 34 lvSpeAiASLivt~eGdTLDCR 55 (130)
T 4hwm_A 34 MMSPDAIASLIVTKEGDTFDCR 55 (130)
T ss_dssp SSSTTCEEEEEECTTSEEEEEE
T ss_pred ccChhheeeEEEcCCCCccchh
Confidence 4899999999999998888875
Done!