Query 031822
Match_columns 152
No_of_seqs 96 out of 117
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 09:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 98.8 3.2E-09 1.1E-13 88.9 3.8 30 117-146 28-63 (276)
2 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 3.1E-09 1.1E-13 66.3 1.9 40 53-100 5-44 (53)
3 2ast_B S-phase kinase-associat 98.0 1.2E-06 4E-11 67.4 1.8 40 53-100 5-44 (336)
4 2p1m_B Transport inhibitor res 97.9 2.7E-06 9.1E-11 70.0 1.2 42 53-101 2-43 (594)
5 2e31_A FBS1, F-box only protei 97.9 4.4E-06 1.5E-10 70.3 2.2 40 54-101 48-88 (297)
6 2ovr_B FBW7, F-BOX/WD repeat p 97.4 4.9E-05 1.7E-09 59.8 1.6 41 53-101 15-55 (445)
7 3v7d_B Cell division control p 97.3 4.3E-05 1.5E-09 59.8 0.9 41 53-101 11-51 (464)
8 1p22_A F-BOX/WD-repeat protein 97.1 0.00012 3.9E-09 57.9 1.1 39 55-101 9-51 (435)
9 3ogk_B Coronatine-insensitive 96.9 0.00023 7.9E-09 58.6 0.9 37 57-100 13-49 (592)
10 3l2o_B F-box only protein 4; s 96.8 0.00013 4.6E-09 62.6 -0.8 38 56-101 4-41 (312)
11 2djk_A PDI, protein disulfide- 21.6 45 0.0015 22.6 1.9 23 90-114 35-57 (133)
12 2jp2_A Spred-2, sprouty-relate 21.2 47 0.0016 24.5 2.0 57 80-145 34-94 (126)
13 2hth_B Vacuolar protein sortin 20.5 55 0.0019 24.2 2.3 25 109-133 81-109 (140)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=98.77 E-value=3.2e-09 Score=88.87 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=26.0
Q ss_pred cccCCCCCCCCeeeEEeecCCC------ceeEEeec
Q 031822 117 CLKQPGPREFPHQCLIRRNKKT------STFYLYLA 146 (152)
Q Consensus 117 slKQPGPRd~~~QCfIkRnk~~------sTy~LyLg 146 (152)
-||||||||.++||||+|||++ .||||||.
T Consensus 28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~ 63 (276)
T 2fim_A 28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD 63 (276)
T ss_dssp GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC
T ss_pred HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe
Confidence 3999999999999999999998 49999995
No 2
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.73 E-value=3.1e-09 Score=66.31 Aligned_cols=40 Identities=30% Similarity=0.525 Sum_probs=33.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031822 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k 100 (152)
.+..|++||+|+|..||.+| |. ++++.|+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~~-~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence 35679999999999999999 43 689999999999999875
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.05 E-value=1.2e-06 Score=67.36 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031822 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k 100 (152)
.+..|.+||+|+|..||.+| +.+ +++.|+.|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 45789999999999999999 443 88999999999999984
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.89 E-value=2.7e-06 Score=69.96 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031822 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
+...|+.||+|+|..||.+| |..+++++|+.|||+|+++...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 34689999999999999999 7678999999999999999433
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.87 E-value=4.4e-06 Score=70.28 Aligned_cols=40 Identities=33% Similarity=0.628 Sum_probs=35.0
Q ss_pred CCCCCCCCHHHHHHHHhhhhcccCCCCCcccee-eehhhhhhHHHHHHH
Q 031822 54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD 101 (152)
Q Consensus 54 ~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VV-aCA~VCR~WR~i~kE 101 (152)
......||+|||.+||.+| |.+ +++ .|++|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence 3467899999999999999 774 788 999999999999754
No 6
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.37 E-value=4.9e-05 Score=59.79 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=35.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031822 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
...-.+.||+|++..||..|.. ++++.|+.|||+|+.++.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHTC
T ss_pred cCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcCc
Confidence 4556899999999999999943 6899999999999998753
No 7
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.34 E-value=4.3e-05 Score=59.82 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.6
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031822 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
+..-.+.||+|++..||..| |. ++++.|+.|||.|+.++.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 44557889999999999999 44 5999999999999998865
No 8
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.11 E-value=0.00012 Score=57.87 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=33.2
Q ss_pred CCCCCCCHH----HHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031822 55 GSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 55 s~WA~LPPE----LL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
.--+.||+| |+..||..|+. +++..|+.|||+|+.++.+
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 345679999 99999999944 6899999999999988854
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.86 E-value=0.00023 Score=58.62 Aligned_cols=37 Identities=14% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031822 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (152)
Q Consensus 57 WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k 100 (152)
.++||+|+|..|+.+| +..+++++|+.|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4589999999999999 556899999999999999953
No 10
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.00013 Score=62.60 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031822 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
-|.+||.|++..||..|++ +|+..|+.|||.||.++.|
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 3778999999999999955 6899999999999999876
No 11
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=21.61 E-value=45 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHhcCCCcccceec
Q 031822 90 CVCKRWREITKDIVKSPFLSGKITF 114 (152)
Q Consensus 90 ~VCR~WR~i~kEiV~~pe~sgkiTF 114 (152)
+=|+.|+.+..++.+ +..|+++|
T Consensus 35 ~~c~~~~p~l~~~A~--~~~gk~~f 57 (133)
T 2djk_A 35 EERKELSDKLKPIAE--AQRGVINF 57 (133)
T ss_dssp SSHHHHHHHHHHHHH--SSTTTSEE
T ss_pred hhHHHHHHHHHHHHH--HhCCeEEE
Confidence 689999999999976 56788877
No 12
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=21.16 E-value=47 Score=24.46 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=39.9
Q ss_pred CCccceeeehhhhhhHHHHHHHHhcCCCcccceeccccccCCCCCCCCeeeEEeec----CCCceeEEee
Q 031822 80 PHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRN----KKTSTFYLYL 145 (152)
Q Consensus 80 PaRk~VVaCA~VCR~WR~i~kEiV~~pe~sgkiTFPislKQPGPRd~~~QCfIkRn----k~~sTy~LyL 145 (152)
|.-..+++...||+ ++.|+-+++-+|=|-..--+=....+.|.|.++ +.+.+||-+-
T Consensus 34 p~~~g~ls~v~v~~---------~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~FH~w~ 94 (126)
T 2jp2_A 34 PQEGGGISRVGVCK---------VMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWK 94 (126)
T ss_dssp ECSCCSCEEEEEEC---------CBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETTEEEEE
T ss_pred eCCCCCcccEEEEE---------ecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCcceEEE
Confidence 43445666667774 466777888888875543334678999999997 6677888764
No 13
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=20.49 E-value=55 Score=24.21 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=18.5
Q ss_pred ccceecccc----ccCCCCCCCCeeeEEe
Q 031822 109 SGKITFPSC----LKQPGPREFPHQCLIR 133 (152)
Q Consensus 109 sgkiTFPis----lKQPGPRd~~~QCfIk 133 (152)
|.||+..+. .|.|||.+..-+++||
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~k 109 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIK 109 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEE
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEE
Confidence 577776655 4678998777778887
Done!