BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031823
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure
pdb|3B6I|B Chain B, Wrba From Escherichia Coli, Native Structure
pdb|3B6J|A Chain A, Wrba From Escherichia Coli, Nadh Complex
pdb|3B6J|B Chain B, Wrba From Escherichia Coli, Nadh Complex
pdb|3B6K|A Chain A, Wrba From Escherichia Coli, Benzoquinone Complex
pdb|3B6K|B Chain B, Wrba From Escherichia Coli, Benzoquinone Complex
pdb|3B6M|A Chain A, Wrba From Escherichia Coli, Second Crystal Form
pdb|3B6M|B Chain B, Wrba From Escherichia Coli, Second Crystal Form
pdb|2R96|A Chain A, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2R96|C Chain C, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2R97|A Chain A, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2R97|C Chain C, Crystal Structure Of E. Coli Wrba In Complex With Fmn
pdb|2RG1|A Chain A, Crystal Structure Of E. Coli Wrba Apoprotein
pdb|2RG1|B Chain B, Crystal Structure Of E. Coli Wrba Apoprotein
Length = 198
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 4 GPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63
G P TP ELA+ D I+ G PTRFG M+ Q + FLD TGGLW S L GK A +F
Sbjct: 53 GKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFS 112
Query: 64 XXXXXXXXXXXXPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFA-GDG 122
T T L HHGM+ VPIGY + ++ +V+GG+PYGA T A GDG
Sbjct: 113 STGTGGGQEQTITSTWTT-LAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDG 170
Query: 123 SRQPSELELAQAFHQGKYFAGITKKLKG 150
SRQPS+ EL+ A +QG+Y AG+ KL G
Sbjct: 171 SRQPSQEELSIARYQGEYVAGLAVKLNG 198
>pdb|1ZWK|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa
pdb|1ZWK|B Chain B, Structure Of Wrba From Pseudomonas Aeruginosa
pdb|1ZWL|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa In Complex
With Fmn
Length = 207
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYXXXXXXXXX 72
T +L G+ LG PTRFG MA+ K FLD T LW + L GKPA +F
Sbjct: 72 TLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQ 131
Query: 73 XXXPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELEL 131
L+ + L+HHGM+ + I Y+ A +E GG+PYGA FAG DG R E EL
Sbjct: 132 ETTQLSMLLPLLHHGMLVLGIPYSEPA---LLETRGGGTPYGASHFAGADGKRSLDEHEL 188
Query: 132 AQAFHQGKYFAGITKKLKG 150
GK A KL+G
Sbjct: 189 TLCRALGKRLAETAGKLEG 207
>pdb|2ZKI|A Chain A, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|B Chain B, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|C Chain C, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|D Chain D, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|E Chain E, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|F Chain F, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|G Chain G, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
pdb|2ZKI|H Chain H, Crystal Structure Of Hypothetical Trp Repressor Binding
Protein From Sul Folobus Tokodaii (St0872)
Length = 199
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYXXXX 67
D+P +T +++ ADG +G PTR+G MA K FLD T LW+ L GKP F
Sbjct: 59 DIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEAST 118
Query: 68 XXXXXXXXPLTAITQLVHHGMIFVPIGYTFGAGMSEM-EKVKGGSPYGAGTFAGDGSRQP 126
LT T H GMI VPIGY G+ E+ + GG PYGA GS++
Sbjct: 119 VHGGHETTILTMSTYAYHFGMIIVPIGY----GIPELFQTTTGGGPYGATHL---GSKEE 171
Query: 127 -SELELAQAFHQGKYFAGITKKLK 149
E+E A QGK + K +K
Sbjct: 172 LDEMERKIARFQGKRITEVAKAIK 195
>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba
pdb|1YDG|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba
Length = 211
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYXXXX 67
DVP TP +L A+ I+ PTRFG +Q +AF+D GGLW S +LA K
Sbjct: 67 DVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQN 126
Query: 68 XXXXXXXXPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQP- 126
T +H G + P GYT E+ GG+PYGA A QP
Sbjct: 127 VNGGQETTLQTLYMTAMHWGAVLTPPGYT-----DEVIFKSGGNPYGASVTANG---QPL 178
Query: 127 SELELAQAFHQGKYFAGITKKL 148
E + A HQ + +T KL
Sbjct: 179 LENDRASIRHQVRRQVELTAKL 200
>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|B Chain B, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|C Chain C, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|D Chain D, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|E Chain E, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|F Chain F, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|G Chain G, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
pdb|1YRH|H Chain H, Crystal Structure Of Trp Repressor Binding Protein Wrba In
Complex With Fmn
Length = 211
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYXXXX 67
DVP TP +L A+ I+ PTRFG +Q +AF+D GGLW S +LA K
Sbjct: 67 DVPEATPADLEWAEAIVFSSPTRFGGATSQXRAFIDTLGGLWSSGKLANKTFSAXTSAQN 126
Query: 68 XXXXXXXXPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQP- 126
T H G + P GYT E+ GG+PYGA A QP
Sbjct: 127 VNGGQETTLQTLYXTAXHWGAVLTPPGYT-----DEVIFKSGGNPYGASVTANG---QPL 178
Query: 127 SELELAQAFHQGKYFAGITKKL 148
E + A HQ + +T KL
Sbjct: 179 LENDRASIRHQVRRQVELTAKL 200
>pdb|2A5L|A Chain A, The Crystal Structure Of The Trp Repressor Binding Protein
Wrba From Pseudomonas Aeruginosa
pdb|2A5L|B Chain B, The Crystal Structure Of The Trp Repressor Binding Protein
Wrba From Pseudomonas Aeruginosa
Length = 200
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYXXXXXXXXX 72
T +L G+ LG PTRFG A+ K FLD T LW + L GKPA +F
Sbjct: 65 TLEDLKNCAGLALGSPTRFGNXASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQ 124
Query: 73 XXXPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELEL 131
L+ + L+HHG + + I Y+ A +E GG+PYGA FAG DG R E EL
Sbjct: 125 ETTQLSXLLPLLHHGXLVLGIPYSEPA---LLETRGGGTPYGASHFAGADGKRSLDEHEL 181
Query: 132 AQAFHQGKYFAGITKKL 148
GK A KL
Sbjct: 182 TLCRALGKRLAETAGKL 198
>pdb|2ARK|A Chain A, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|B Chain B, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|C Chain C, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|D Chain D, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|E Chain E, Structure Of A Flavodoxin From Aquifex Aeolicus
pdb|2ARK|F Chain F, Structure Of A Flavodoxin From Aquifex Aeolicus
Length = 188
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 9 VPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDAT-GGLWRSQQLAGKPAGIFYXXXX 67
V T ++ ADG+ +G PT G+++ + K F D G LW ++ GK A F
Sbjct: 42 VDEATKEDVLWADGLAVGSPTNXGLVSWKXKRFFDDVLGDLW--GEIDGKIACAFSSSGG 99
Query: 68 XXXXXXXXPLTAITQLVHHGMI 89
+ +T L + G +
Sbjct: 100 WGGGNEVACXSILTXLXNFGFL 121
>pdb|1SQS|A Chain A, X-Ray Crystal Structure Protein Sp1951 Of Streptococcus
Pneumoniae. Northeast Structural Genomics Consortium
Target Spr27.
pdb|1SQS|B Chain B, X-Ray Crystal Structure Protein Sp1951 Of Streptococcus
Pneumoniae. Northeast Structural Genomics Consortium
Target Spr27.
pdb|2OYS|A Chain A, Crystal Structure Of Sp1951 Protein From Streptococcus
Pneumoniae In Complex With Fmn, Northeast Structural
Genomics Target Spr27
pdb|2OYS|B Chain B, Crystal Structure Of Sp1951 Protein From Streptococcus
Pneumoniae In Complex With Fmn, Northeast Structural
Genomics Target Spr27
Length = 242
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 12 ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGK 57
+ EL E+D I++ P ++ K F++ GG +LAGK
Sbjct: 72 VIKKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGK 117
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 42 LDATGGLWRSQQLAGKPAGIFYXXXXXXXXXXXXPLTAITQLVHHG 87
LD LW SQ GK +G++ +TA T+LV HG
Sbjct: 2507 LDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHG 2552
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 42 LDATGGLWRSQQLAGKPAGIFYXXXXXXXXXXXXPLTAITQLVHHG 87
LD LW SQ GK +G++ +TA T+LV HG
Sbjct: 2298 LDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHG 2343
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLF 101
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + ++ + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPAQAFSISGKQKGFEDSRGTLF 101
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 2 GAGPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW 49
G P+ D+ + + + D + GFP + + + K F D+ G L+
Sbjct: 54 GEKPEGDITQVNEKTIPDHDILCAGFPCQAFSIQGKQKGFEDSRGTLF 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,645,872
Number of Sequences: 62578
Number of extensions: 180309
Number of successful extensions: 303
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 28
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)