Query 031823
Match_columns 152
No_of_seqs 154 out of 1600
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3135 1,4-benzoquinone reduc 100.0 1.2E-29 2.6E-34 182.0 13.5 150 1-150 50-202 (203)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 4.8E-28 1E-32 181.8 15.9 142 6-148 55-197 (197)
3 PRK03767 NAD(P)H:quinone oxido 100.0 1.3E-27 2.8E-32 179.7 16.9 137 13-150 63-200 (200)
4 COG0655 WrbA Multimeric flavod 99.9 5.9E-22 1.3E-26 149.7 12.4 142 6-149 63-206 (207)
5 PRK05569 flavodoxin; Provision 99.7 6.8E-16 1.5E-20 109.6 11.8 101 9-142 38-140 (141)
6 PRK06242 flavodoxin; Provision 99.7 2.4E-16 5.3E-21 112.9 9.4 111 14-144 38-149 (150)
7 PRK05568 flavodoxin; Provision 99.7 2.6E-15 5.7E-20 106.7 11.9 102 9-143 38-141 (142)
8 PRK11921 metallo-beta-lactamas 99.6 9.3E-16 2E-20 126.0 10.4 99 14-145 295-393 (394)
9 PRK05452 anaerobic nitric oxid 99.6 1.4E-15 3.1E-20 127.7 10.5 98 15-146 300-397 (479)
10 PF03358 FMN_red: NADPH-depend 99.6 2.9E-16 6.3E-21 112.6 5.4 88 5-95 57-144 (152)
11 PRK06756 flavodoxin; Provision 99.6 9.8E-15 2.1E-19 104.6 10.9 102 14-144 44-146 (148)
12 TIGR01753 flav_short flavodoxi 99.6 1.7E-14 3.8E-19 101.7 10.4 104 9-142 35-140 (140)
13 TIGR03566 FMN_reduc_MsuE FMN r 99.6 6.1E-15 1.3E-19 108.5 8.0 115 8-146 58-172 (174)
14 PRK10569 NAD(P)H-dependent FMN 99.6 2.9E-14 6.3E-19 106.7 10.5 117 8-147 56-174 (191)
15 PRK06703 flavodoxin; Provision 99.5 8.2E-14 1.8E-18 100.2 10.8 109 11-148 40-150 (151)
16 TIGR03567 FMN_reduc_SsuE FMN r 99.5 4E-14 8.6E-19 104.0 6.8 115 8-143 55-170 (171)
17 COG0426 FpaA Uncharacterized f 99.5 7.1E-14 1.5E-18 113.5 8.7 104 6-143 285-388 (388)
18 PRK07308 flavodoxin; Validated 99.5 2.6E-13 5.7E-18 97.1 10.3 107 8-143 37-144 (146)
19 TIGR02690 resist_ArsH arsenica 99.4 1.7E-12 3.6E-17 98.9 10.9 119 14-149 85-204 (219)
20 PRK00170 azoreductase; Reviewe 99.4 6.4E-13 1.4E-17 99.4 7.7 84 8-92 76-170 (201)
21 PRK01355 azoreductase; Reviewe 99.3 1.2E-11 2.5E-16 93.0 10.1 85 7-92 66-164 (199)
22 PRK09267 flavodoxin FldA; Vali 99.3 6.5E-11 1.4E-15 86.5 12.1 124 10-142 37-164 (169)
23 PRK13556 azoreductase; Provisi 99.3 4.1E-11 9E-16 90.5 10.4 79 14-92 84-176 (208)
24 PRK09739 hypothetical protein; 99.3 9.3E-12 2E-16 93.4 5.7 60 8-68 69-132 (199)
25 PRK13555 azoreductase; Provisi 99.2 4E-10 8.7E-15 85.4 11.6 56 14-69 84-148 (208)
26 COG0431 Predicted flavoprotein 99.2 6.2E-11 1.3E-15 88.1 7.1 76 14-94 62-137 (184)
27 PRK12359 flavodoxin FldB; Prov 99.1 1.6E-09 3.6E-14 79.8 11.8 104 8-115 34-142 (172)
28 PF02525 Flavodoxin_2: Flavodo 99.1 4.8E-10 1E-14 83.9 7.4 79 14-92 73-172 (199)
29 PRK04930 glutathione-regulated 99.1 1.6E-09 3.5E-14 80.6 10.0 86 7-93 50-150 (184)
30 PRK00871 glutathione-regulated 99.0 3.4E-09 7.5E-14 78.3 9.3 80 14-93 50-142 (176)
31 TIGR01752 flav_long flavodoxin 99.0 1.2E-08 2.5E-13 74.7 11.0 88 9-100 34-124 (167)
32 PRK09271 flavodoxin; Provision 98.9 7.6E-09 1.6E-13 75.2 8.4 98 14-145 46-147 (160)
33 COG1182 AcpD Acyl carrier prot 98.9 1.3E-08 2.7E-13 76.2 9.6 76 14-89 82-170 (202)
34 KOG4530 Predicted flavoprotein 98.9 1.2E-08 2.5E-13 73.5 8.9 69 14-90 81-149 (199)
35 PRK06934 flavodoxin; Provision 98.9 5.4E-09 1.2E-13 79.7 7.0 60 14-82 124-183 (221)
36 PRK07116 flavodoxin; Provision 98.7 4E-08 8.7E-13 71.3 7.2 60 14-82 71-130 (160)
37 PF12682 Flavodoxin_4: Flavodo 98.7 1.6E-08 3.5E-13 73.3 4.9 60 14-82 68-127 (156)
38 COG2249 MdaB Putative NADPH-qu 98.7 2.4E-07 5.1E-12 69.3 9.5 60 7-67 56-124 (189)
39 PF12724 Flavodoxin_5: Flavodo 98.5 9.7E-08 2.1E-12 68.0 3.6 50 14-68 38-87 (143)
40 TIGR01754 flav_RNR ribonucleot 98.5 9.6E-07 2.1E-11 62.6 8.3 63 14-83 45-110 (140)
41 PRK11104 hemG protoporphyrinog 98.5 1.6E-07 3.4E-12 69.5 4.1 48 14-66 41-88 (177)
42 PRK09004 FMN-binding protein M 98.2 1E-05 2.3E-10 57.9 7.5 79 13-93 40-119 (146)
43 PF00258 Flavodoxin_1: Flavodo 98.1 5E-06 1.1E-10 58.7 5.2 81 14-94 40-125 (143)
44 PF12641 Flavodoxin_3: Flavodo 98.0 2.6E-05 5.7E-10 56.8 6.4 42 17-67 37-78 (160)
45 COG0716 FldA Flavodoxins [Ener 97.8 0.00021 4.6E-09 51.2 9.1 102 16-143 45-149 (151)
46 PRK08105 flavodoxin; Provision 97.6 0.00016 3.5E-09 52.0 6.0 74 18-93 47-121 (149)
47 PRK05723 flavodoxin; Provision 97.2 0.0032 6.8E-08 45.4 8.0 81 12-93 38-122 (151)
48 PRK10953 cysJ sulfite reductas 97.0 0.0057 1.2E-07 53.3 9.5 85 7-92 96-181 (600)
49 COG4635 HemG Flavodoxin [Energ 96.9 0.00044 9.6E-09 50.1 1.8 45 16-65 44-88 (175)
50 TIGR01931 cysJ sulfite reducta 96.8 0.0095 2.1E-07 51.9 9.2 85 7-92 93-178 (597)
51 PRK03600 nrdI ribonucleotide r 96.4 0.012 2.7E-07 41.5 6.1 43 16-65 35-82 (134)
52 TIGR00333 nrdI ribonucleoside- 96.0 0.077 1.7E-06 37.1 8.3 39 16-65 33-72 (125)
53 PRK10834 vancomycin high tempe 80.4 5 0.00011 31.2 5.4 70 14-88 39-111 (239)
54 PRK02551 flavoprotein NrdI; Pr 78.6 16 0.00034 26.5 7.1 41 18-65 52-103 (154)
55 PF13344 Hydrolase_6: Haloacid 74.3 2.7 5.9E-05 27.8 2.1 57 18-91 3-59 (101)
56 PF07972 Flavodoxin_NdrI: NrdI 71.2 4.4 9.6E-05 28.1 2.6 41 18-65 36-81 (122)
57 COG1780 NrdI Protein involved 71.1 30 0.00064 24.7 6.7 42 17-65 37-83 (141)
58 PF01210 NAD_Gly3P_dh_N: NAD-d 65.0 10 0.00022 27.0 3.6 43 14-67 64-106 (157)
59 cd06259 YdcF-like YdcF-like. Y 62.4 30 0.00064 24.0 5.6 63 22-88 3-65 (150)
60 TIGR00333 nrdI ribonucleoside- 58.9 24 0.00052 24.5 4.5 65 29-95 1-73 (125)
61 COG1445 FrwB Phosphotransferas 57.2 11 0.00024 26.2 2.4 21 9-29 46-66 (122)
62 KOG2728 Uncharacterized conser 55.0 20 0.00044 28.2 3.8 34 27-66 7-40 (302)
63 KOG1159 NADP-dependent flavopr 50.9 36 0.00078 29.5 4.9 83 9-91 37-121 (574)
64 cd03140 GATase1_PfpI_3 Type 1 50.3 28 0.00061 24.8 3.9 44 14-64 53-99 (170)
65 PRK12490 6-phosphogluconate de 49.8 1.3E+02 0.0027 23.7 8.1 61 20-96 60-121 (299)
66 PF10087 DUF2325: Uncharacteri 49.6 37 0.00079 22.0 4.0 42 14-65 43-84 (97)
67 PRK15438 erythronate-4-phospha 44.9 1.6E+02 0.0035 24.4 7.9 72 12-92 72-144 (378)
68 cd03141 GATase1_Hsp31_like Typ 43.6 45 0.00097 25.1 4.2 41 17-64 88-131 (221)
69 PRK00257 erythronate-4-phospha 43.3 1.6E+02 0.0035 24.5 7.7 72 12-92 72-144 (381)
70 TIGR01019 sucCoAalpha succinyl 42.8 1.7E+02 0.0037 23.3 7.9 65 13-94 54-121 (286)
71 PF06554 Olfactory_mark: Olfac 42.3 28 0.00061 24.6 2.6 17 131-147 108-124 (151)
72 COG0061 nadF NAD kinase [Coenz 41.7 15 0.00033 29.0 1.4 12 18-29 164-175 (281)
73 PRK05752 uroporphyrinogen-III 41.5 37 0.0008 26.0 3.5 27 14-47 50-76 (255)
74 PF06283 ThuA: Trehalose utili 41.0 67 0.0015 23.9 4.8 40 7-46 40-79 (217)
75 COG1587 HemD Uroporphyrinogen- 39.8 38 0.00083 25.9 3.4 43 14-64 45-87 (248)
76 PRK09393 ftrA transcriptional 38.7 45 0.00097 26.4 3.7 45 14-65 70-115 (322)
77 COG0078 ArgF Ornithine carbamo 37.7 1.7E+02 0.0038 23.7 6.7 56 52-140 149-204 (310)
78 PRK05928 hemD uroporphyrinogen 37.5 58 0.0013 24.2 4.0 42 14-63 47-88 (249)
79 PRK10444 UMP phosphatase; Prov 36.8 52 0.0011 25.3 3.7 56 18-90 6-61 (248)
80 PRK14077 pnk inorganic polypho 36.7 20 0.00044 28.5 1.4 12 18-29 175-186 (287)
81 PRK08818 prephenate dehydrogen 36.7 22 0.00048 29.4 1.7 26 4-29 36-61 (370)
82 PRK03958 tRNA 2'-O-methylase; 36.7 55 0.0012 24.2 3.6 32 14-46 117-148 (176)
83 cd01979 Pchlide_reductase_N Pc 35.7 1.8E+02 0.0039 24.0 6.9 78 7-91 104-184 (396)
84 PF09822 ABC_transp_aux: ABC-t 35.5 76 0.0017 24.5 4.5 69 14-91 191-265 (271)
85 PRK14818 NADH dehydrogenase su 35.5 1.1E+02 0.0024 22.6 4.9 43 16-67 67-109 (173)
86 PRK01185 ppnK inorganic polyph 35.2 19 0.00041 28.4 1.0 12 18-29 156-167 (271)
87 PRK02649 ppnK inorganic polyph 34.9 22 0.00047 28.6 1.3 12 18-29 179-190 (305)
88 PRK03372 ppnK inorganic polyph 34.9 23 0.00049 28.5 1.4 12 18-29 183-194 (306)
89 TIGR01383 not_thiJ DJ-1 family 34.2 45 0.00097 23.7 2.8 44 14-64 56-104 (179)
90 PRK01911 ppnK inorganic polyph 34.1 20 0.00043 28.6 1.0 12 18-29 174-185 (292)
91 PF02662 FlpD: Methyl-viologen 33.9 73 0.0016 21.9 3.7 12 19-30 52-64 (124)
92 PRK02645 ppnK inorganic polyph 33.6 24 0.00053 28.2 1.4 12 18-29 177-188 (305)
93 PRK03501 ppnK inorganic polyph 33.6 24 0.00053 27.7 1.4 12 18-29 147-158 (264)
94 PRK04885 ppnK inorganic polyph 33.5 25 0.00054 27.6 1.4 12 18-29 146-157 (265)
95 cd06578 HemD Uroporphyrinogen- 33.5 69 0.0015 23.5 3.8 42 14-63 44-85 (239)
96 KOG0057 Mitochondrial Fe/S clu 32.8 72 0.0016 28.0 4.1 36 54-92 376-411 (591)
97 PRK00561 ppnK inorganic polyph 32.8 24 0.00051 27.7 1.2 12 18-29 135-146 (259)
98 cd03138 GATase1_AraC_2 AraC tr 32.7 55 0.0012 23.7 3.1 44 14-64 64-112 (195)
99 PRK14075 pnk inorganic polypho 32.7 26 0.00057 27.3 1.4 12 18-29 144-155 (256)
100 PRK04539 ppnK inorganic polyph 32.6 25 0.00055 28.1 1.3 11 19-29 180-190 (296)
101 PRK01231 ppnK inorganic polyph 32.4 25 0.00055 28.0 1.3 12 18-29 173-184 (295)
102 cd04161 Arl2l1_Arl13_like Arl2 32.0 1.2E+02 0.0026 21.2 4.7 48 15-65 62-109 (167)
103 PRK02231 ppnK inorganic polyph 32.0 27 0.00058 27.6 1.4 11 19-29 155-165 (272)
104 CHL00023 ndhK NADH dehydrogena 31.9 1.2E+02 0.0027 23.3 4.9 42 17-67 69-110 (225)
105 PRK03708 ppnK inorganic polyph 31.8 27 0.00059 27.6 1.4 12 18-29 163-174 (277)
106 cd04158 ARD1 ARD1 subfamily. 31.7 99 0.0021 21.6 4.3 48 15-65 62-109 (169)
107 PF02698 DUF218: DUF218 domain 31.6 33 0.00072 23.9 1.7 65 20-88 2-68 (155)
108 PRK04761 ppnK inorganic polyph 30.9 29 0.00064 27.0 1.4 11 19-29 133-143 (246)
109 PRK09599 6-phosphogluconate de 30.9 1.5E+02 0.0033 23.2 5.5 61 20-95 60-120 (301)
110 PRK02155 ppnK NAD(+)/NADH kina 30.8 28 0.0006 27.7 1.3 12 18-29 174-185 (291)
111 PF02153 PDH: Prephenate dehyd 30.4 98 0.0021 23.9 4.3 28 14-47 40-67 (258)
112 COG2242 CobL Precorrin-6B meth 29.8 2.2E+02 0.0047 21.3 5.8 69 8-95 92-161 (187)
113 PRK02842 light-independent pro 29.6 2.6E+02 0.0056 23.3 6.9 78 7-91 114-195 (427)
114 cd03147 GATase1_Ydr533c_like T 29.6 67 0.0014 24.6 3.2 42 16-64 91-135 (231)
115 cd03135 GATase1_DJ-1 Type 1 gl 29.5 56 0.0012 22.7 2.6 45 13-64 52-101 (163)
116 PF00919 UPF0004: Uncharacteri 28.9 74 0.0016 20.9 2.9 47 15-65 32-78 (98)
117 COG0386 BtuE Glutathione perox 28.9 1.2E+02 0.0027 22.1 4.2 42 53-95 22-65 (162)
118 PRK08811 uroporphyrinogen-III 28.8 98 0.0021 24.1 4.1 39 14-63 64-102 (266)
119 TIGR02717 AcCoA-syn-alpha acet 28.1 3.7E+02 0.0079 22.7 7.7 68 14-94 58-128 (447)
120 cd01968 Nitrogenase_NifE_I Nit 27.9 2.1E+02 0.0046 23.6 6.1 80 7-92 103-189 (410)
121 PRK08410 2-hydroxyacid dehydro 27.8 3.1E+02 0.0068 21.8 7.9 74 11-92 76-173 (311)
122 PF11038 DGF-1_5: Dispersed ge 27.6 1.3E+02 0.0028 22.9 4.3 46 17-67 106-151 (278)
123 PRK14813 NADH dehydrogenase su 27.6 1.5E+02 0.0032 22.3 4.6 42 18-68 66-107 (189)
124 cd01965 Nitrogenase_MoFe_beta_ 27.5 2.1E+02 0.0045 23.8 6.0 81 7-92 98-187 (428)
125 cd03148 GATase1_EcHsp31_like T 26.9 1.3E+02 0.0027 23.1 4.3 29 18-46 95-126 (232)
126 PRK13143 hisH imidazole glycer 26.8 65 0.0014 23.8 2.6 15 14-28 33-47 (200)
127 cd01977 Nitrogenase_VFe_alpha 26.8 3.1E+02 0.0068 22.7 6.9 80 7-92 105-193 (415)
128 cd03136 GATase1_AraC_ArgR_like 26.7 94 0.002 22.2 3.5 43 15-64 60-103 (185)
129 PRK06975 bifunctional uroporph 26.7 77 0.0017 28.3 3.4 39 14-63 50-88 (656)
130 TIGR01861 ANFD nitrogenase iro 26.1 3.3E+02 0.0072 23.6 7.1 80 7-92 145-233 (513)
131 PRK11574 oxidative-stress-resi 25.9 93 0.002 22.6 3.3 45 14-65 59-108 (196)
132 cd00316 Oxidoreductase_nitroge 25.7 2.1E+02 0.0045 23.2 5.7 71 18-92 110-184 (399)
133 cd03139 GATase1_PfpI_2 Type 1 25.7 1.1E+02 0.0024 21.7 3.6 45 14-65 57-103 (183)
134 smart00178 SAR Sar1p-like memb 25.5 1.3E+02 0.0028 21.5 4.0 47 16-65 81-127 (184)
135 cd01971 Nitrogenase_VnfN_like 25.5 2.7E+02 0.0059 23.2 6.3 83 7-92 103-191 (427)
136 PF11382 DUF3186: Protein of u 25.3 1.7E+02 0.0036 23.5 4.9 49 40-92 67-115 (308)
137 KOG2178 Predicted sugar kinase 25.1 40 0.00088 28.2 1.3 13 18-30 284-296 (409)
138 cd03137 GATase1_AraC_1 AraC tr 24.9 1.1E+02 0.0025 21.8 3.6 45 14-65 59-105 (187)
139 cd01862 Rab7 Rab7 subfamily. 24.7 1.7E+02 0.0036 20.1 4.4 52 14-65 67-118 (172)
140 PRK10474 putative PTS system f 24.7 81 0.0018 20.3 2.5 21 9-29 28-48 (88)
141 COG3260 Ni,Fe-hydrogenase III 24.6 1.8E+02 0.0039 20.8 4.3 42 18-68 48-89 (148)
142 PRK03378 ppnK inorganic polyph 24.6 42 0.00091 26.7 1.3 13 18-30 174-186 (292)
143 PRK14816 NADH dehydrogenase su 24.4 2E+02 0.0043 21.5 4.7 42 18-68 80-121 (182)
144 PRK12439 NAD(P)H-dependent gly 24.2 3.5E+02 0.0076 21.7 6.6 26 15-46 73-98 (341)
145 TIGR01458 HAD-SF-IIA-hyp3 HAD- 24.0 1.5E+02 0.0033 22.8 4.3 40 18-64 6-45 (257)
146 cd04101 RabL4 RabL4 (Rab-like4 24.0 1.4E+02 0.003 20.4 3.8 46 15-65 71-116 (164)
147 PRK07168 bifunctional uroporph 23.4 82 0.0018 27.0 2.9 43 13-63 294-337 (474)
148 PF09314 DUF1972: Domain of un 23.4 1.2E+02 0.0025 22.6 3.4 32 58-89 3-36 (185)
149 COG3643 Glutamate formiminotra 23.4 1.4E+02 0.003 23.6 3.8 21 125-145 99-119 (302)
150 PLN02935 Bifunctional NADH kin 23.4 42 0.00091 29.1 1.1 12 18-29 378-389 (508)
151 cd00877 Ran Ran (Ras-related n 23.3 2.1E+02 0.0045 19.9 4.7 47 14-65 67-113 (166)
152 TIGR01282 nifD nitrogenase mol 23.1 1.9E+02 0.0042 24.6 5.1 36 52-95 331-366 (466)
153 cd03134 GATase1_PfpI_like A ty 22.6 1.4E+02 0.003 20.8 3.6 41 18-65 61-103 (165)
154 cd04124 RabL2 RabL2 subfamily. 22.4 1.5E+02 0.0033 20.4 3.8 47 14-65 67-113 (161)
155 TIGR02931 anfK_nitrog Fe-only 22.4 2.5E+02 0.0054 23.8 5.6 68 19-91 132-199 (461)
156 TIGR00110 ilvD dihydroxy-acid 22.3 2.1E+02 0.0046 25.1 5.1 22 126-147 201-222 (535)
157 cd03169 GATase1_PfpI_1 Type 1 22.0 1.3E+02 0.0027 21.6 3.3 39 19-64 76-116 (180)
158 TIGR01459 HAD-SF-IIA-hyp4 HAD- 21.9 3.4E+02 0.0074 20.4 5.9 27 32-65 23-49 (242)
159 PRK05678 succinyl-CoA syntheta 21.9 4.1E+02 0.009 21.1 7.9 65 13-94 56-123 (291)
160 PLN02645 phosphoglycolate phos 21.9 1.3E+02 0.0028 23.8 3.7 55 19-90 34-88 (311)
161 TIGR01196 edd 6-phosphoglucona 21.6 2.3E+02 0.0051 25.2 5.3 22 126-147 249-270 (601)
162 TIGR00829 FRU PTS system, fruc 21.5 1E+02 0.0022 19.7 2.5 20 10-29 43-62 (85)
163 PRK14815 NADH dehydrogenase su 21.2 2.5E+02 0.0054 21.0 4.7 43 17-68 71-113 (183)
164 PLN02929 NADH kinase 21.1 52 0.0011 26.5 1.2 12 18-29 194-205 (301)
165 smart00177 ARF ARF-like small 21.0 1.3E+02 0.0029 21.2 3.3 46 17-65 78-123 (175)
166 TIGR01957 nuoB_fam NADH-quinon 20.9 1.7E+02 0.0037 20.9 3.7 42 18-68 56-97 (145)
167 KOG2448 Dihydroxy-acid dehydra 20.8 3.1E+02 0.0068 23.0 5.6 21 126-146 261-281 (596)
168 cd01967 Nitrogenase_MoFe_alpha 20.7 4.3E+02 0.0093 21.6 6.6 80 7-92 104-191 (406)
169 PRK06411 NADH dehydrogenase su 20.6 2.8E+02 0.0061 20.7 4.9 42 18-68 73-114 (183)
170 PRK05282 (alpha)-aspartyl dipe 20.5 4E+02 0.0087 20.5 7.2 65 21-93 2-67 (233)
171 TIGR00670 asp_carb_tr aspartat 20.5 3.2E+02 0.007 21.8 5.6 61 26-91 117-180 (301)
172 PF01935 DUF87: Domain of unkn 20.5 1.2E+02 0.0026 22.5 3.0 36 53-91 20-56 (229)
173 PF05596 Taeniidae_ag: Taeniid 20.3 90 0.002 19.1 1.9 13 137-149 28-40 (64)
174 TIGR01862 N2-ase-Ialpha nitrog 20.3 5.2E+02 0.011 21.7 7.1 80 7-92 135-222 (443)
175 smart00175 RAB Rab subfamily o 20.2 2.8E+02 0.0062 18.6 6.7 75 14-92 67-141 (164)
176 PRK04147 N-acetylneuraminate l 20.2 2.1E+02 0.0046 22.4 4.5 28 19-46 99-126 (293)
177 PRK08250 glutamine amidotransf 20.1 1.4E+02 0.0031 22.7 3.4 15 16-30 42-57 (235)
No 1
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=181.99 Aligned_cols=150 Identities=77% Similarity=1.193 Sum_probs=139.4
Q ss_pred CCCCCCC-CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHH
Q 031823 1 MGAGPKS-DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTA 79 (152)
Q Consensus 1 ~~~~~~~-~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~ 79 (152)
|.++||+ |.|.++.+.+.+||+.+||-||.+|+|++++|+|+|+...+|..+.|.||++++|.|.|..+||++.+...-
T Consensus 50 m~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta 129 (203)
T KOG3135|consen 50 MKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTA 129 (203)
T ss_pred hcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHH
Confidence 5678885 999999999999999999999999999999999999999999999999999999999997778888888888
Q ss_pred HHHHHHcCcEEecCCCc-CCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 80 ITQLVHHGMIFVPIGYT-FGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 80 ~~~l~~~g~~~v~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
+..|.++||+.|+.+|+ .+.....+++|++|++||++.+++ |+.+.|++-+++.++..|+.+++.+++|+.
T Consensus 130 ~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 130 ITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred HHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 88999999999999998 555556778899999999999999 999999999999999999999999999975
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.96 E-value=4.8e-28 Score=181.81 Aligned_cols=142 Identities=54% Similarity=0.870 Sum_probs=122.6
Q ss_pred CCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031823 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 6 ~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~ 85 (152)
+++.+.++.+++.+||+||||||+|+++++++||.|+|++..+|....+.||++++|+|+||.+|+.+.++..++..+.+
T Consensus 55 ~~~~~~~~~~~l~~aD~ii~GSPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~ 134 (197)
T TIGR01755 55 DQTAPVATPQELADYDAIIFGTPTRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLH 134 (197)
T ss_pred ccCCccCCHHHHHHCCEEEEEecccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34556666789999999999999999999999999999999888767899999999999999878888899999999999
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031823 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~l 148 (152)
+||.+|+.+|.. ........++++++||+.++.+ ++...|++.+++.|+.+|+|+|+++++|
T Consensus 135 ~Gm~vv~~~~~~-~~~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 135 HGMIIVPLPYAA-QEQMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCCEEeCCCccc-ccccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987642 2222233357899999999987 6667899999999999999999999986
No 3
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.96 E-value=1.3e-27 Score=179.69 Aligned_cols=137 Identities=57% Similarity=0.904 Sum_probs=119.7
Q ss_pred CHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
+.+++.+||+||||||+|++++++++|.|+|++..+|....+.+|++++|+++||.+|+.+.++..++..+.++||.+|+
T Consensus 63 ~~~~l~~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 63 TPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred CHHHHHhCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeC
Confidence 48999999999999999999999999999999998887678999999999999998888888999999999999999999
Q ss_pred CCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
.++.. ..+......++|++||+.++.+ ++...|++++++.|+.+|+|+|+++++|++
T Consensus 143 ~~~~~-~~~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 143 LPYAF-QGQMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCCcc-ccccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77653 1111122346789999999876 666789999999999999999999999974
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.88 E-value=5.9e-22 Score=149.68 Aligned_cols=142 Identities=46% Similarity=0.677 Sum_probs=114.4
Q ss_pred CCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHH-hcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHH
Q 031823 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA-TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV 84 (152)
Q Consensus 6 ~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~-l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~ 84 (152)
+|+++++ .++|.+||+||||||||+++++++||+|||| +..+|....+.+|+++.|++.+..+|+++.++..+..++.
T Consensus 63 dD~~~~i-~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~ 141 (207)
T COG0655 63 DDDMNEI-YEKLLEADGIIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFL 141 (207)
T ss_pred cccHHHH-HHHHHHCCEEEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHH
Confidence 3557788 9999999999999999999999999999999 7777777789999999999998877777668899999999
Q ss_pred HcCcEEecCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031823 85 HHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~l~ 149 (152)
+++|.+++.++.....-........|.++|+...+. +.. .+.+.+++.++.+++++++.+.++.
T Consensus 142 ~~~~~~v~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 142 HHGMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLS-RPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred HcCCeEecccccccccCcccccccCCCCcccceecccccc-ccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999987765211100011256788888887765 332 3777889999999999998887764
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.68 E-value=6.8e-16 Score=109.65 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=80.3
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCCch--HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEADGILLGFPTRFGMMA--AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~--~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+....++.+||+||||||||+++++ ++++.|+|++.. ..++||++++|+|+||..+. .+..+.+.+...
T Consensus 38 ~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~----~~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~ 110 (141)
T PRK05569 38 VADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKL----TPNENKKCILFGSYGWDNGE---FMKLWKDRMKDY 110 (141)
T ss_pred CCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhc----cCcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHC
Confidence 444556799999999999999999864 689999999864 24689999999999885322 456677777778
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la 142 (152)
|+++++. +.+ + ..|+++++++|+++|++|+
T Consensus 111 g~~~~~~-~~~----------~---------------~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 111 GFNVIGD-LAV----------N---------------ESPNKEELNSAKELGKKLA 140 (141)
T ss_pred CCeEeee-EEE----------c---------------cCCCHHHHHHHHHHHHHHh
Confidence 9998863 221 1 5699999999999999986
No 6
>PRK06242 flavodoxin; Provisional
Probab=99.68 E-value=2.4e-16 Score=112.88 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=81.7
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|.||||||+|+++++++++.|+|++. .++||++++|+|+||..++. ...+.+.+...|+++++.
T Consensus 38 ~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 38 PEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred cccHhHCCEEEEeCchhcCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999999984 35899999999998854332 667777888899999874
Q ss_pred CCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~ 144 (152)
+.. .+-..++...+.+ .....|++++++.|+++|++|++.
T Consensus 109 -~~~----------~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 109 -FSC----------KGFDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred -Eec----------CCcccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 221 1111111111101 112569999999999999998753
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.65 E-value=2.6e-15 Score=106.66 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=81.5
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCCch--HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEADGILLGFPTRFGMMA--AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~--~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+....++.++|+||||||+|+++++ +.++.|++++.. .+++|++++|+++||..+ .....+.+.+...
T Consensus 38 ~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~~---~~~~~~~~~l~~~ 109 (142)
T PRK05568 38 VSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGDG---EWMRDWVERMEGY 109 (142)
T ss_pred CCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCCC---hHHHHHHHHHHHC
Confidence 344446689999999999999999984 689999999853 468999999999988432 2466677778889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
|+++++.++.. + ..|+++++++|+++|+.|+.
T Consensus 110 g~~~~~~~~~~----------~---------------~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 110 GANLVNEGLIV----------N---------------NTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred CCEEeCCcEEE----------e---------------cCCCHHHHHHHHHHHHHHHh
Confidence 99999865431 1 45899999999999999864
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.65 E-value=9.3e-16 Score=125.96 Aligned_cols=99 Identities=23% Similarity=0.221 Sum_probs=82.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+||||||||++++.+.++.|++.+.. ..++||++++|||+||. |+ ++..+.+.|...|+++++.
T Consensus 295 ~~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~----~~~~~K~~a~FGsygw~-g~---a~~~~~~~l~~~g~~~v~~ 366 (394)
T PRK11921 295 ITEVFKSKAILVGSSTINRGILSSTAAILEEIKG----LGFKNKKAAAFGSYGWS-GE---SVKIITERLKKAGFEIVND 366 (394)
T ss_pred HHHHHhCCEEEEECCCcCccccHHHHHHHHHhhc----cCcCCCEEEEEecCCCc-cH---HHHHHHHHHHHCCCEEccC
Confidence 4456789999999999999999999999999874 46899999999999984 33 4677888888899999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~ 145 (152)
++.+ + ..|+++++++|+++|++|++.+
T Consensus 367 ~~~~----------~---------------~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 367 GIRE----------L---------------WNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred cEEE----------E---------------eCCCHHHHHHHHHHHHHHHHhh
Confidence 5442 1 4689999999999999998643
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.64 E-value=1.4e-15 Score=127.67 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=81.3
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCC
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 94 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~ 94 (152)
.++.+||+||||||||++++.++|+.|++.+.. ..++||++++||||||. |+ +...+.+.|...|++++. +
T Consensus 300 ~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~~----~~l~gK~~~vFGSygw~-g~---a~~~~~~~l~~~g~~~~~-~ 370 (479)
T PRK05452 300 TNVFRSKGVLVGSSTMNNVMMPKIAGLLEEITG----LRFRNKRASAFGSHGWS-GG---AVDRLSTRLQDAGFEMSL-S 370 (479)
T ss_pred hHHhhCCEEEEECCccCCcchHHHHHHHHHhhc----cCcCCCEEEEEECCCcC-cH---HHHHHHHHHHHCCCEEec-c
Confidence 444579999999999999999999999999975 36899999999999984 33 366788888889999974 4
Q ss_pred CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031823 95 YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~ 146 (152)
+.+ + ..|+++++++|+++|++|++.++
T Consensus 371 l~~----------~---------------~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 371 LKA----------K---------------WRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred EEE----------E---------------ecCCHHHHHHHHHHHHHHHHHHh
Confidence 331 1 56999999999999999997655
No 10
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.64 E-value=2.9e-16 Score=112.62 Aligned_cols=88 Identities=34% Similarity=0.484 Sum_probs=72.3
Q ss_pred CCCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHH
Q 031823 5 PKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV 84 (152)
Q Consensus 5 ~~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~ 84 (152)
.+|++.++ .+++.+||+|||+||+|+++++++||+||||+.. +....+++|++++++++|+.. +......++...+.
T Consensus 57 ~~d~~~~~-~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~-g~~~~~~~l~~~~~ 133 (152)
T PF03358_consen 57 IPDDVQEL-YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRR-GGLRALEQLRQILD 133 (152)
T ss_dssp TSHHHHHH-HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSS-TTHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhceecCCeEEEeecEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCc-HHHHHHHHHHHHHH
Confidence 35566666 8999999999999999999999999999999964 334688999999998887643 44567888888888
Q ss_pred HcCcEEecCCC
Q 031823 85 HHGMIFVPIGY 95 (152)
Q Consensus 85 ~~g~~~v~~~~ 95 (152)
.+||.+++..+
T Consensus 134 ~~~~~~~~~~~ 144 (152)
T PF03358_consen 134 YLGMIVVPSGV 144 (152)
T ss_dssp HTTBEEECCSE
T ss_pred HCCCEEcCCcE
Confidence 99999998643
No 11
>PRK06756 flavodoxin; Provisional
Probab=99.61 E-value=9.8e-15 Score=104.64 Aligned_cols=102 Identities=26% Similarity=0.317 Sum_probs=83.5
Q ss_pred HHHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..++.++|+||||||||+ +.++..++.|++.+.. ..++||++++|+++++..++...++..+.+.|...|+.+++
T Consensus 44 ~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~----~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 44 ASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS----IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhc----CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC
Confidence 578899999999999996 7777789999999863 36899999999997654344446688888899999999997
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~ 144 (152)
.+..+ + ..|+++++++|+++|++|++.
T Consensus 120 ~~~~~----------~---------------~~p~~~d~~~~~~~~~~~~~~ 146 (148)
T PRK06756 120 EGLKV----------E---------------LTPEDEDVEKCLQFGAEFVKH 146 (148)
T ss_pred CCeEE----------e---------------cCCCHHHHHHHHHHHHHHHHh
Confidence 65431 1 569999999999999999764
No 12
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.59 E-value=1.7e-14 Score=101.66 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=82.0
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCC-ch-HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEADGILLGFPTRFGM-MA-AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~-~~-~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+....++.++|.||||+|||+.+ ++ +.++.|++++.. ..++||++++|+++||... ...+...+.+.|...
T Consensus 35 ~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~ 109 (140)
T TIGR01753 35 VADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEA 109 (140)
T ss_pred cccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHC
Confidence 4455567899999999999999865 65 799999999864 3579999999999887431 235677788888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la 142 (152)
|+.++..++.. . ..|+++++++|+++|++|+
T Consensus 110 g~~~v~~~~~~----------~---------------~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 110 GATIIAEGLKV----------D---------------GDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred CCEEecCCeee----------e---------------cCCCHHHHHHHHHHHHHhC
Confidence 99998765331 1 4589999999999999874
No 13
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.58 E-value=6.1e-15 Score=108.53 Aligned_cols=115 Identities=23% Similarity=0.213 Sum_probs=79.2
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
++..+ .++|.+||+|||+||+||+++|+++|+|||++.. ..+.||++++++++|... +.......+...+..++
T Consensus 58 ~~~~~-~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~ 131 (174)
T TIGR03566 58 DAERI-LQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQ 131 (174)
T ss_pred HHHHH-HHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhC
Confidence 33344 8899999999999999999999999999999862 468999999998876532 22222333555666678
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031823 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~ 146 (152)
+.+++...... . ..+. ++ ...|++..++.+.+.+.+++.+.
T Consensus 132 ~~~~~~~~~~~-----------~-----~~~~-~g-~l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 132 ALTLPTGVYAS-----------D-----ADFA-DY-RLASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred cccccceEEEE-----------h-----hhhc-cc-cccCHHHHHHHHHHHHHHHHHhc
Confidence 77665322110 0 0111 12 23577888899998888887654
No 14
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.57 E-value=2.9e-14 Score=106.66 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=83.9
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchH-HHHHHHHHHc
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHH 86 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~-~~~~~~l~~~ 86 (152)
++..+ .++|.+||+|||+||+||+++|+.+|+|||++.. ..|+||++++++++|.. | ....+ ..++..+..+
T Consensus 56 ~~~~~-~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~~-~-~~~~~~~~lr~~l~~l 128 (191)
T PRK10569 56 ALKTF-TEQLAQADGLIVATPVYKASFSGALKTLLDLLPE----RALEHKVVLPLATGGSV-A-HMLAVDYALKPVLSAL 128 (191)
T ss_pred HHHHH-HHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCCc-h-hHHHHHHHHHHHHHHc
Confidence 33344 7899999999999999999999999999999842 57899999999987553 3 33344 3455566778
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
|+.+++.+...... .... |.+...+++..++.+.+.+.+++.++.
T Consensus 129 ~a~~~~~~~~~~~~----------------~~~~~d~~~~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 129 KAQEILHGVFADDS----------------QVIDYHHQPQFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred CCeecCceEEEech----------------hhhccccccccCHHHHHHHHHHHHHHHHHHcc
Confidence 98887765432110 0110 122345889999999999999876543
No 15
>PRK06703 flavodoxin; Provisional
Probab=99.54 E-value=8.2e-14 Score=100.16 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=84.6
Q ss_pred CCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 11 TITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+....++.++|.|||||||| .+.++..++.|++.+.. ..+++|++++|++++|..+........+.+.|...|+.
T Consensus 40 ~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~----~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~ 115 (151)
T PRK06703 40 GMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLEN----IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAE 115 (151)
T ss_pred hCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhc----CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCE
Confidence 33456789999999999999 57788889999999863 36789999999998774332234566688888889999
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 031823 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~-~e~~~~a~~lG~~la~~~~~l 148 (152)
+++..+.+ . ..|+ ++++++|++++++|++.++++
T Consensus 116 ~~~~~~~~----------~---------------~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 116 LVQEGLKI----------E---------------LAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred EcccCeEE----------e---------------cCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 98765432 1 4465 799999999999999876654
No 16
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.51 E-value=4e-14 Score=104.02 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchH-HHHHHHHHHc
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHH 86 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~-~~~~~~l~~~ 86 (152)
++..+ .+++.+||+|||+||+||+++|+.+|+|||++. ...+.+|++++++++|.. ++ ...+ ..+...+..+
T Consensus 55 ~~~~l-~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~----~~~l~~K~v~~~~~gg~~-~~-~~~~~~~l~~~l~~l 127 (171)
T TIGR03567 55 AIKAA-TAQVAQADGVVVATPVYKASYSGVLKALLDLLP----QRALRGKVVLPIATGGSI-AH-LLAIDYALKPVLSAL 127 (171)
T ss_pred HHHHH-HHHHHHCCEEEEECCcccCCCCHHHHHHHHhCC----hhhhCCCEEEEEEcCCch-hH-HHHHHHHHHHHHHHc
Confidence 44445 889999999999999999999999999999985 247899999988776542 22 2223 2456666678
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
|+.++...+.++.. . ..++.++....|++..+++++++++++.
T Consensus 128 ~~~~~~~~v~~~~~-------~-------~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 128 GARHILPGVFALDS-------Q-------IERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred CCccccceEEEEhh-------H-------hccccCCccccCHHHHHHHHHHHHHHHh
Confidence 88654433221100 0 0011122211477778888888877653
No 17
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.50 E-value=7.1e-14 Score=113.45 Aligned_cols=104 Identities=27% Similarity=0.291 Sum_probs=87.2
Q ss_pred CCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031823 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 6 ~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~ 85 (152)
.++.+++ .++|.+|++||+||||+++++++.+..++-.+.. ...++|++++|+|+||. |++ ...+.+.|..
T Consensus 285 ~~~~~eI-~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~----~~~~~k~~~vfgS~GW~-g~a---v~~i~~~l~~ 355 (388)
T COG0426 285 DADPSEI-VEEILDAKGLVVGSPTINGGAHPPIQTALGYVLA----LAPKNKLAGVFGSYGWS-GEA---VDLIEEKLKD 355 (388)
T ss_pred cCCHHHH-HHHHhhcceEEEecCcccCCCCchHHHHHHHHHh----ccCcCceEEEEeccCCC-Ccc---hHHHHHHHHh
Confidence 4578888 9999999999999999999999999999999975 36799999999999995 444 4556777778
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
.|+++...++. ++ ..|+++++++|+++|+.+|+
T Consensus 356 ~g~~~~~~~i~----------vk---------------~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 356 LGFEFGFDGIE----------VK---------------FRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred cCcEEeccceE----------EE---------------ecCCHHHHHHHHHHHHHhcC
Confidence 89988765433 22 67999999999999999874
No 18
>PRK07308 flavodoxin; Validated
Probab=99.50 E-value=2.6e-13 Score=97.05 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=82.3
Q ss_pred CCCCCCHHHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 8 DVPTITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
++.+...+++.++|+|||+||||. +.++..++.|++.+.. ..++||++++||++....++.......+.+.+...
T Consensus 37 ~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~----~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~ 112 (146)
T PRK07308 37 ECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLAD----LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALT 112 (146)
T ss_pred ecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHc
Confidence 334455678899999999999997 7788899999999874 46799999999994321222234567777788889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
|+.++...+.+ . ..|++++++.|+++|++|++
T Consensus 113 g~~~~~~~~~~----------~---------------~~p~~~~~~~~~~~~~~l~~ 144 (146)
T PRK07308 113 GATKGAESVKV----------D---------------LAAEDEDIERLEAFAEELAA 144 (146)
T ss_pred CCeEccCcEEE----------e---------------CCCCHHHHHHHHHHHHHHHh
Confidence 99988654432 1 45899999999999999975
No 19
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.43 E-value=1.7e-12 Score=98.91 Aligned_cols=119 Identities=12% Similarity=0.024 Sum_probs=87.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~-~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+.+.+||++||+||.||+++++.+|++||.+...+. ...+.+||+++++++|+. + +..++..++..+..+++.+++
T Consensus 85 ~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~-~-g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 85 RQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS-Q-SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred HHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH-h-HHHHHHHHHHHHHHCCCcccc
Confidence 5788899999999999999999999999999986543 136899999999876443 2 455678888888889999887
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~ 149 (152)
....+... ...++.++. ..+++..+..+++.+.+...++..+
T Consensus 163 ~~v~i~~a--------------~~~fd~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 163 NQSSVAKA--------------FDEFDEAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred chhhhhhh--------------HhhcCcCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 64332110 011222232 4577778888888888887777654
No 20
>PRK00170 azoreductase; Reviewed
Probab=99.42 E-value=6.4e-13 Score=99.40 Aligned_cols=84 Identities=21% Similarity=0.143 Sum_probs=60.5
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----c----cCCCCCCeEEEEEecCCCCCCC--cchH
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----R----SQQLAGKPAGIFYSTGSQGGGQ--ETTP 76 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~-----~----~~~l~gK~~~~~~s~G~~~gg~--~~~~ 76 (152)
++.++ .++|.+||+|||+||+||+++|+++|+||||+.... . .+.++||++.+++++|...++. ....
T Consensus 76 ~~~~l-~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~ 154 (201)
T PRK00170 76 LSDEL-LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGV 154 (201)
T ss_pred HHHHH-HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHH
Confidence 44445 789999999999999999999999999999986421 0 1357999999999876532211 2334
Q ss_pred HHHHHHHHHcCcEEec
Q 031823 77 LTAITQLVHHGMIFVP 92 (152)
Q Consensus 77 ~~~~~~l~~~g~~~v~ 92 (152)
..+...+...|+..++
T Consensus 155 ~~~~~~~~~~G~~~~~ 170 (201)
T PRK00170 155 PYLKTFLGFIGITDVE 170 (201)
T ss_pred HHHHHHHHhcCCCceE
Confidence 4444555567877654
No 21
>PRK01355 azoreductase; Reviewed
Probab=99.33 E-value=1.2e-11 Score=93.01 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc--------c----cCCCCCCeEEEEEecCCCCCCC--
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW--------R----SQQLAGKPAGIFYSTGSQGGGQ-- 72 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~--------~----~~~l~gK~~~~~~s~G~~~gg~-- 72 (152)
+++..+ .+++.+||+|||+||+||+++|+++|+||||+.... . .+.++||++.+++++|...+..
T Consensus 66 ~~~~~~-~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~ 144 (199)
T PRK01355 66 EVSDKY-INQLKSVDKVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPW 144 (199)
T ss_pred hhHHHH-HHHHHhCCEEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCc
Confidence 455555 899999999999999999999999999999985321 0 1357899999999988543221
Q ss_pred cchHHHHHHHHHHcCcEEec
Q 031823 73 ETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 73 ~~~~~~~~~~l~~~g~~~v~ 92 (152)
......+...+..+|++.+.
T Consensus 145 ~~~~~~l~~~~~~~G~~~~~ 164 (199)
T PRK01355 145 GSHTNYLEGTWEFLGAKVVD 164 (199)
T ss_pred cchHHHHHHHHHhcCCCcee
Confidence 23444555555667777654
No 22
>PRK09267 flavodoxin FldA; Validated
Probab=99.30 E-value=6.5e-11 Score=86.55 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCCHHHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC---cchHHHHHHHHHH
Q 031823 10 PTITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ---ETTPLTAITQLVH 85 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~---~~~~~~~~~~l~~ 85 (152)
++....++.++|.||||+|||+ +.+++.++.|++++.. ..++||++++|++++.. +.. ...+..+.+.+..
T Consensus 37 ~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~----~~l~~k~vaifg~g~~~-~~~~~~~~~~~~l~~~l~~ 111 (169)
T PRK09267 37 AKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEE----IDFSGKKVALFGLGDQE-DYAEYFCDAMGTLYDIVEP 111 (169)
T ss_pred hhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEecCCCC-cchHHHHHHHHHHHHHHHH
Confidence 3444578899999999999996 8888999999998853 46899999999986542 222 3456677788888
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031823 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la 142 (152)
.|+.+++.--..+|.+....+++++.++|.. .+ .+..++..+ ++.+++.+.|.
T Consensus 112 ~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~-~d--~~~~~~~td-~~i~~w~~~i~ 164 (169)
T PRK09267 112 RGATIVGHWPTDGYTFEASKAVDDGKFVGLA-LD--EDNQSELTD-ERIEAWVKQIK 164 (169)
T ss_pred CCCEEECccCCCCccccccceeeCCEEEEEE-ec--CCCchhhhH-HHHHHHHHHHH
Confidence 9999998622223444333344556677664 32 223344444 66666655554
No 23
>PRK13556 azoreductase; Provisional
Probab=99.28 E-value=4.1e-11 Score=90.50 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=59.0
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----c----cCCCCCCeEEEEEecCCCCCC-C----cchHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----R----SQQLAGKPAGIFYSTGSQGGG-Q----ETTPLTA 79 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~-----~----~~~l~gK~~~~~~s~G~~~gg-~----~~~~~~~ 79 (152)
.+++.+||.|||++|+||+++|+.+|+||||+.... . .+.+++|++.+++++|+...+ . ......+
T Consensus 84 ~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l 163 (208)
T PRK13556 84 LNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYV 163 (208)
T ss_pred HHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHH
Confidence 689999999999999999999999999999997541 1 135899999999997764311 1 1223445
Q ss_pred HHHHHHcCcEEec
Q 031823 80 ITQLVHHGMIFVP 92 (152)
Q Consensus 80 ~~~l~~~g~~~v~ 92 (152)
...|...|+..++
T Consensus 164 ~~il~~~G~~~~~ 176 (208)
T PRK13556 164 ASMMGFFGVTNME 176 (208)
T ss_pred HHHHHhcCCCcee
Confidence 5566667777654
No 24
>PRK09739 hypothetical protein; Provisional
Probab=99.26 E-value=9.3e-12 Score=93.41 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc----ccCCCCCCeEEEEEecCCC
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~----~~~~l~gK~~~~~~s~G~~ 68 (152)
++..+ .+++.+||+|||++|+||+++|+.+|+|||++.... ....+.+|++.++.+.|+.
T Consensus 69 ~~~~~-~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 69 EVHQL-YSELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred HHHHH-HHHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 33444 889999999999999999999999999999985321 1235789999888887654
No 25
>PRK13555 azoreductase; Provisional
Probab=99.19 E-value=4e-10 Score=85.36 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQG 69 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~---------~~~~l~gK~~~~~~s~G~~~ 69 (152)
.+++.+||.|||++|+||+++|+.+|+|||++.... ..+.++||++.++++.|+..
T Consensus 84 ~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~ 148 (208)
T PRK13555 84 LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDY 148 (208)
T ss_pred HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCC
Confidence 688999999999999999999999999999987431 12468999999999977644
No 26
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.19 E-value=6.2e-11 Score=88.15 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=65.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.++|.+||++||+||+|++++++.+|+.||.+.. ..+.+|++++++++|+.. +...+...++..+..+++..++.
T Consensus 62 ~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~----~~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 62 REAIAAADGLIIATPEYNGSYPGALKNAIDWLSR----EALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred HHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCH----hHhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 6789999999999999999999999999999974 368999999999987653 44556777888888899999876
Q ss_pred C
Q 031823 94 G 94 (152)
Q Consensus 94 ~ 94 (152)
+
T Consensus 137 ~ 137 (184)
T COG0431 137 G 137 (184)
T ss_pred c
Confidence 5
No 27
>PRK12359 flavodoxin FldB; Provisional
Probab=99.12 E-value=1.6e-09 Score=79.76 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=77.3
Q ss_pred CCCCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHH
Q 031823 8 DVPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLV 84 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~--~~~~~~~~~~l~ 84 (152)
++.+...+++.++|.||||+||| .+.++..+..|++.+.. ..|+||++++||++...+.+. ..++..+.+.+.
T Consensus 34 ~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~ 109 (172)
T PRK12359 34 NLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDD----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLA 109 (172)
T ss_pred EcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhh----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHH
Confidence 34555577899999999999998 67889999999998863 478999999999875421111 234566777777
Q ss_pred HcCcEEecCCCcCCCCCccccccc-cCC-CCCC
Q 031823 85 HHGMIFVPIGYTFGAGMSEMEKVK-GGS-PYGA 115 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~-~~~-~~g~ 115 (152)
..|.++++.--..+|.|...+.+. .|. +.|.
T Consensus 110 ~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl 142 (172)
T PRK12359 110 PKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGL 142 (172)
T ss_pred hCCCeEEeeEeCCCcccccceeeEcCCCEEEEE
Confidence 889999986446677777667664 333 6666
No 28
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.07 E-value=4.8e-10 Score=83.87 Aligned_cols=79 Identities=27% Similarity=0.255 Sum_probs=58.7
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc---c--------ccCCCCCCeEEEEEecCCCC---C---CC----
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL---W--------RSQQLAGKPAGIFYSTGSQG---G---GQ---- 72 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~---~--------~~~~l~gK~~~~~~s~G~~~---g---g~---- 72 (152)
++++.+||.|||++|+||++||+.+|.||||+... + ..+.|+||++.+++++|... + ..
T Consensus 73 ~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~ 152 (199)
T PF02525_consen 73 IEELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSM 152 (199)
T ss_dssp HHHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHH
T ss_pred HHHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCCh
Confidence 48899999999999999999999999999998421 1 13578999999999987651 1 11
Q ss_pred cchHHHHHHHHHHcCcEEec
Q 031823 73 ETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 73 ~~~~~~~~~~l~~~g~~~v~ 92 (152)
+..+..+...+...|++.+.
T Consensus 153 ~~~~~~~~~~~~~~G~~~~~ 172 (199)
T PF02525_consen 153 DHLLPYLRGILKFCGIKDVE 172 (199)
T ss_dssp HHHHHHHHHHHHHTTEEEEE
T ss_pred hhhHHHHHHHHHhCCCceee
Confidence 12333455556678999885
No 29
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.07 E-value=1.6e-09 Score=80.55 Aligned_cols=86 Identities=22% Similarity=0.175 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc----cCCCCCCeEEEEEecCCCC-----CCCc-ch
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-WR----SQQLAGKPAGIFYSTGSQG-----GGQE-TT 75 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~-~~----~~~l~gK~~~~~~s~G~~~-----gg~~-~~ 75 (152)
.|+... .+++.+||.|||..|+||+++|+.+|.|+|++... |. ...++||.+.++.|+|+.. +|.. ..
T Consensus 50 ~d~~~e-q~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~ 128 (184)
T PRK04930 50 IDIPHE-QALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYP 128 (184)
T ss_pred CCHHHH-HHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCC
Confidence 344333 77999999999999999999999999999998642 11 1368999999998876532 1212 23
Q ss_pred HHHH----HHHHHHcCcEEecC
Q 031823 76 PLTA----ITQLVHHGMIFVPI 93 (152)
Q Consensus 76 ~~~~----~~~l~~~g~~~v~~ 93 (152)
++++ ...+..+||+.++.
T Consensus 129 ~~~ll~p~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 129 MSDILRPFELTAAMCRMHWLSP 150 (184)
T ss_pred HHHHHHHHHHHHHHcCCeEcCc
Confidence 3333 33445679988763
No 30
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.00 E-value=3.4e-09 Score=78.31 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=57.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-c---c-cCCCCCCeEEEEEecCCCC-----CCCc---chHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-W---R-SQQLAGKPAGIFYSTGSQG-----GGQE---TTPLTAI 80 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~-~---~-~~~l~gK~~~~~~s~G~~~-----gg~~---~~~~~~~ 80 (152)
.+.+.+||.|||..|.||+++|+.+|.|+|++... + . ...|+||++.++.+.|+.. ++.. ..+..+.
T Consensus 50 q~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~ 129 (176)
T PRK00871 50 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQ 129 (176)
T ss_pred HHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHH
Confidence 77899999999999999999999999999998532 1 1 2358999988888776531 1211 1233444
Q ss_pred HHHHHcCcEEecC
Q 031823 81 TQLVHHGMIFVPI 93 (152)
Q Consensus 81 ~~l~~~g~~~v~~ 93 (152)
..+...||..++.
T Consensus 130 ~~~~~~G~~~l~~ 142 (176)
T PRK00871 130 ATALYCGLNWLPP 142 (176)
T ss_pred HHHHHcCCeEcce
Confidence 4555678887753
No 31
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=98.96 E-value=1.2e-08 Score=74.71 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=64.6
Q ss_pred CCCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHH
Q 031823 9 VPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVH 85 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~-~g-g~~~~~~~~~~~l~~ 85 (152)
+.+....++.++|.||||+||| .+.++..++.|++.+.. ..++||++++|++++.. .+ ....++..+.+.|..
T Consensus 34 ~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~ 109 (167)
T TIGR01752 34 IAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKA 109 (167)
T ss_pred cccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Confidence 3444456899999999999999 57788899999998853 36799999999986432 11 123456778888888
Q ss_pred cCcEEecCCCcCCCC
Q 031823 86 HGMIFVPIGYTFGAG 100 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~ 100 (152)
.|+++++.-...+|.
T Consensus 110 ~G~~~ig~~~~~gy~ 124 (167)
T TIGR01752 110 RGAKVVGFWPTDGYH 124 (167)
T ss_pred cCCeEEceecCCCcc
Confidence 999999853333443
No 32
>PRK09271 flavodoxin; Provisional
Probab=98.91 E-value=7.6e-09 Score=75.19 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=64.3
Q ss_pred HHHHhhCCEEEEeccccCCCc-hHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHHHcCcEE
Q 031823 14 PNELAEADGILLGFPTRFGMM-AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~-~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~--~~~~~~~~~~l~~~g~~~ 90 (152)
..++.++|+||||||||+++. +..++.|++.+.. ...++|++++|++++...++. -.+.+.+...|... +
T Consensus 46 ~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~----~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-~-- 118 (160)
T PRK09271 46 PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE----TIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-Y-- 118 (160)
T ss_pred ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH----HhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-C--
Confidence 456778999999999997665 5579999999863 234789999999973211110 13445555444321 1
Q ss_pred ecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q 031823 91 VPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSE-LELAQAFHQGKYFAGIT 145 (152)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~-e~~~~a~~lG~~la~~~ 145 (152)
..+. +. ..|++ ++++.++++++++++.+
T Consensus 119 --~~l~----------~~---------------~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 119 --PRLK----------IE---------------QMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred --Ccee----------ee---------------cCCccchhHHHHHHHHHHHHHHh
Confidence 1111 11 34554 56899999999998766
No 33
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=98.91 E-value=1.3e-08 Score=76.17 Aligned_cols=76 Identities=24% Similarity=0.177 Sum_probs=58.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCCCCC----cchHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ----ETTPLTAI 80 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~---------~~~~l~gK~~~~~~s~G~~~gg~----~~~~~~~~ 80 (152)
++++..||.+||++|+||.++|+++|+|||++.... ..+.+.||++.++.+.|+..++. +.....+.
T Consensus 82 ~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YLr 161 (202)
T COG1182 82 LEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLR 161 (202)
T ss_pred HHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHHH
Confidence 788999999999999999999999999999986421 13578999999999988776654 33444555
Q ss_pred HHHHHcCcE
Q 031823 81 TQLVHHGMI 89 (152)
Q Consensus 81 ~~l~~~g~~ 89 (152)
..|...|++
T Consensus 162 ~ilgF~Git 170 (202)
T COG1182 162 TILGFLGIT 170 (202)
T ss_pred HHhhhcCCC
Confidence 555555654
No 34
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=73.52 Aligned_cols=69 Identities=29% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
-.+|.++|.|+|.||.||++.++.+|+.+|+++. .+.|||+.+++ ||+ +||.. ...++.+.....+|.+
T Consensus 81 ~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivS-yGG-hGGg~-c~~qL~~v~~fLkm~v 149 (199)
T KOG4530|consen 81 RQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVS-YGG-HGGGR-CQYQLRQVGVFLKMHV 149 (199)
T ss_pred HHHHhhcceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEE-ecC-CCCch-HHHHHHHHHhhheeee
Confidence 4689999999999999999999999999999974 67999998765 555 45543 3455555555567764
No 35
>PRK06934 flavodoxin; Provisional
Probab=98.89 E-value=5.4e-09 Score=79.73 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=50.7
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~ 82 (152)
.+++.+||.|+||+|+||+.+++.+++||++. +++||.+..|.++|+. |...+++.|.+.
T Consensus 124 ~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggs--g~g~s~~~i~~l 183 (221)
T PRK06934 124 IQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGS--RFSDSLREIKRL 183 (221)
T ss_pred HHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCC--CccchHHHHHHH
Confidence 57999999999999999999999999999986 6799999999998653 344456666654
No 36
>PRK07116 flavodoxin; Provisional
Probab=98.74 E-value=4e-08 Score=71.32 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=47.7
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~ 82 (152)
..++.++|.||||+|+|++++++.++.|++++ .+++|++++|+++|++. ...+..++.+.
T Consensus 71 ~~~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~--~g~~~~~~~~~ 130 (160)
T PRK07116 71 IENIAEYDVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSG--IGNAEKELKKS 130 (160)
T ss_pred HhhHHhCCEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCC--cCcHHHHHHHH
Confidence 34788999999999999999999999999975 57899999999987643 22345555543
No 37
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.73 E-value=1.6e-08 Score=73.33 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=44.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~ 82 (152)
..++.++|.|+||+|+|++++++++.+||++. +++||.++.|.++|++ +...+...|.+.
T Consensus 68 ~~d~~~YD~I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~ 127 (156)
T PF12682_consen 68 IPDLSDYDTIFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKL 127 (156)
T ss_dssp -S-GGG-SEEEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH
T ss_pred ccCcccCCEEEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHH
Confidence 45889999999999999999999999999975 6899999999998753 333456666544
No 38
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=98.66 E-value=2.4e-07 Score=69.27 Aligned_cols=60 Identities=32% Similarity=0.324 Sum_probs=50.2
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc----cc-----CCCCCCeEEEEEecCC
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW----RS-----QQLAGKPAGIFYSTGS 67 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~----~~-----~~l~gK~~~~~~s~G~ 67 (152)
.|+... .+++.+||.|||--|.||+++|+.+|.||||+...- .. +.|+||.+.+++|+|.
T Consensus 56 ~Dv~~E-~e~l~~AD~ivlqfPlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~ 124 (189)
T COG2249 56 IDVKAE-QEKLLWADVIVLQFPLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGA 124 (189)
T ss_pred CCHHHH-HHHHHhcceEEEEcCchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCC
Confidence 344444 889999999999999999999999999999986432 11 5799999999999876
No 39
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.51 E-value=9.7e-08 Score=68.04 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=44.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
..++.++|.||+|+|+|.+.+++.++.|+++.. ..+++|++++|+++++.
T Consensus 38 ~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~-----~~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 38 EPDLSDYDAVIFGSPIYAGRIPGEMREFIKKNK-----DNLKNKKVALFSVGGSS 87 (143)
T ss_pred ccccccCCEEEEEEEEECCcCCHHHHHHHHHHH-----HHHcCCcEEEEEEeCCC
Confidence 457899999999999999999999999999874 36799999999998774
No 40
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=98.49 E-value=9.6e-07 Score=62.63 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=45.4
Q ss_pred HHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHH
Q 031823 14 PNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQL 83 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~--~~~~~~~~~~l 83 (152)
..++.++|.|||||||| .+.++..++.|++.+. .++|.+++|++++...++. -.+.+.+.+.|
T Consensus 45 ~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l 110 (140)
T TIGR01754 45 PLDPENYDLVFLGTWTWERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFF 110 (140)
T ss_pred cCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHH
Confidence 34677899999999998 5667779999999974 2789999999984211110 13555565554
No 41
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=98.48 E-value=1.6e-07 Score=69.46 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=42.7
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G 66 (152)
..++.+||.||||+|+|++.+++.++.|+++.. ..|++|++++|+++.
T Consensus 41 ~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 41 EPDLSDYDRVVIGASIRYGHFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred ccCHHHCCEEEEECccccCCcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 346889999999999999999999999999864 478999999999874
No 42
>PRK09004 FMN-binding protein MioC; Provisional
Probab=98.17 E-value=1e-05 Score=57.94 Aligned_cols=79 Identities=11% Similarity=-0.002 Sum_probs=61.0
Q ss_pred CHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 13 TPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..+++.++|.+||++||| .|.++...+.|++.+... ...++|+++++||.+.+....--.....+.+.|..+|.+.|
T Consensus 40 ~~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v 117 (146)
T PRK09004 40 LLDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQI 117 (146)
T ss_pred CHHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEe
Confidence 367899999999999999 899999999999988642 24689999999998755321112345667777778899887
Q ss_pred cC
Q 031823 92 PI 93 (152)
Q Consensus 92 ~~ 93 (152)
..
T Consensus 118 ~~ 119 (146)
T PRK09004 118 GE 119 (146)
T ss_pred ec
Confidence 64
No 43
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=98.13 E-value=5e-06 Score=58.70 Aligned_cols=81 Identities=23% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHHHhhCCEEEEeccccCCC-chHHHHHHHHHhcCcc----ccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031823 14 PNELAEADGILLGFPTRFGM-MAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~-~~~~~k~fld~l~~~~----~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
..++.+++.+|+++|||+.+ ++..++.++.++...+ ....+++|.+++|+.+.+..+.--.+...+.+.|..+|+
T Consensus 40 ~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~ 119 (143)
T PF00258_consen 40 PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGA 119 (143)
T ss_dssp HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTE
T ss_pred hhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCC
Confidence 55899999999999999855 5544443444433222 135789999999998765322222567888888999999
Q ss_pred EEecCC
Q 031823 89 IFVPIG 94 (152)
Q Consensus 89 ~~v~~~ 94 (152)
+++...
T Consensus 120 ~~~~~~ 125 (143)
T PF00258_consen 120 KRVGPL 125 (143)
T ss_dssp EEESSS
T ss_pred EEEECc
Confidence 998753
No 44
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=97.96 E-value=2.6e-05 Score=56.81 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=39.2
Q ss_pred HhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031823 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~ 67 (152)
+.++|.|++|+++|.|+..+.++.||.++ +||.+++|+|.|.
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l---------~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKL---------KGKKVALFGTAGA 78 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHc---------cCCeEEEEEecCC
Confidence 78899999999999999999999999975 7899999999876
No 45
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=97.82 E-value=0.00021 Score=51.25 Aligned_cols=102 Identities=21% Similarity=0.120 Sum_probs=67.4
Q ss_pred HHhhCCEEEEeccccCCCchH-HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHHHcCcEEec
Q 031823 16 ELAEADGILLGFPTRFGMMAA-QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~-~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~--~~~~~~~~~~l~~~g~~~v~ 92 (152)
++.++|.+++|||||..+-.+ .+..|++.+.. ..+++|++++|+++.. .... -.....+...+...|...++
T Consensus 45 ~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~-~~~~~fc~~~~~~~~~~~~~g~~~~~ 119 (151)
T COG0716 45 LLESYDELLLGTPTWGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQ-SYYGYFCEAGGNFEDILEEKGAKAVG 119 (151)
T ss_pred hhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc----cCcCCceEEEEecccc-ccchHHHHHHHHHHHHHHHcCccccc
Confidence 446899999999999766655 99999999974 4789999999999432 2222 22345555666666643332
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
..-..+ . .. ...+++++.++++++.+++..
T Consensus 120 ~~~~~~----------------~-~~----~~~~~e~~~~~~~~w~~~~~~ 149 (151)
T COG0716 120 ILETLG----------------Y-IF----DASPNEEDEKRIKEWVKQILN 149 (151)
T ss_pred cccccc----------------e-ec----cCCCCCccHHHHHHHHHHHHh
Confidence 110100 0 00 134778889999999988765
No 46
>PRK08105 flavodoxin; Provisional
Probab=97.64 E-value=0.00016 Score=51.95 Aligned_cols=74 Identities=12% Similarity=-0.023 Sum_probs=55.8
Q ss_pred hhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 18 AEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 18 ~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.|||++||| .|.++..++.|++.+... ...|+|+.+++||.+....----.....+.+.|..+|.+.+..
T Consensus 47 ~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 47 YQDELVLVVTSTTGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred ccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 4479999999999 789999999999998742 2378999999999875322111234566777777889888764
No 47
>PRK05723 flavodoxin; Provisional
Probab=97.18 E-value=0.0032 Score=45.41 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCHHHHhhC--CEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCC-CcchHHHHHHHHHHcC
Q 031823 12 ITPNELAEA--DGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHG 87 (152)
Q Consensus 12 ~~~~~i~~a--D~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg-~~~~~~~~~~~l~~~g 87 (152)
....++.++ |.|||+++|| .|.+|.....|.+.+.... ...|+|+.+++|+.+....+. --.+...+.+.|...|
T Consensus 38 ~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lG 116 (151)
T PRK05723 38 ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELG 116 (151)
T ss_pred CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCC
Confidence 446677766 9999999999 6889999999999986421 127999999999986443221 1245566777777788
Q ss_pred cEEecC
Q 031823 88 MIFVPI 93 (152)
Q Consensus 88 ~~~v~~ 93 (152)
.+.|..
T Consensus 117 A~rv~~ 122 (151)
T PRK05723 117 VREVQP 122 (151)
T ss_pred CcEeec
Confidence 877653
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=97.02 E-value=0.0057 Score=53.31 Aligned_cols=85 Identities=9% Similarity=-0.065 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031823 7 SDVPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~ 85 (152)
.++.+...+++.+.+.+||.++|| .|.++..++.|.+.+.... ...|.|+.+++||.+.+...---.+...+.+.|..
T Consensus 96 ~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~ 174 (600)
T PRK10953 96 VNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAE 174 (600)
T ss_pred echHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999 8999999999999885321 24689999999998755421112345566677777
Q ss_pred cCcEEec
Q 031823 86 HGMIFVP 92 (152)
Q Consensus 86 ~g~~~v~ 92 (152)
+|.+.+.
T Consensus 175 lGA~rl~ 181 (600)
T PRK10953 175 LGAERLL 181 (600)
T ss_pred CCCeEee
Confidence 8887764
No 49
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=96.95 E-value=0.00044 Score=50.14 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=41.1
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++.++|+||||+|+|++.....++.|+.+-. ..|..||.++|.+.
T Consensus 44 ~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~-----e~L~~kP~A~f~vn 88 (175)
T COG4635 44 ALEDYDAVVIGASIRYGHFHEAVQSFVKKHA-----EALSTKPSAFFSVN 88 (175)
T ss_pred ChhhCceEEEecchhhhhhHHHHHHHHHHHH-----HHHhcCCceEEEee
Confidence 7889999999999999999999999999874 47899999999875
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=96.81 E-value=0.0095 Score=51.87 Aligned_cols=85 Identities=14% Similarity=-0.058 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031823 7 SDVPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~ 85 (152)
.++.+...+++.+.+.+||.++|| .|.++..++.|.+.+.... ...|+|+.+++||.+.+....--.+...+.+.|..
T Consensus 93 ~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~ 171 (597)
T TIGR01931 93 SSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEE 171 (597)
T ss_pred echHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHH
Confidence 345566678899999999999999 7999999999999885421 24689999999997654321112344566667777
Q ss_pred cCcEEec
Q 031823 86 HGMIFVP 92 (152)
Q Consensus 86 ~g~~~v~ 92 (152)
+|.+.+.
T Consensus 172 lGa~ri~ 178 (597)
T TIGR01931 172 LGGKRLL 178 (597)
T ss_pred cCCeEee
Confidence 8887764
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=96.42 E-value=0.012 Score=41.54 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHhhCCEEEEeccccC-----CCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 16 ELAEADGILLGFPTRF-----GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~-----g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.+...+-+||.+|||. |.+|.+++.|++.... .....++++++
T Consensus 35 ~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n-------~~~~~gV~gsG 82 (134)
T PRK03600 35 RLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN-------RKLLRGVIASG 82 (134)
T ss_pred cccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc-------CCcEEEEEEec
Confidence 3456788999999997 4899999999988531 23467777764
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=96.02 E-value=0.077 Score=37.09 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 16 ELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++ ++|.|++ |+|| .|.+|.++..|++.+. + +..++|+|+
T Consensus 33 ~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~------n---~~~gV~gSG 72 (125)
T TIGR00333 33 HV-DQEFVLI-TYTGGFGAVPKQTISFLNKKH------N---LLRGVAASG 72 (125)
T ss_pred hc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhh------h---cEEEEEEcC
Confidence 44 8999999 9999 5779999999999874 2 889999875
No 53
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=80.45 E-value=5 Score=31.17 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=43.1
Q ss_pred HHHHhhCC-EEEEeccccC--CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031823 14 PNELAEAD-GILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 14 ~~~i~~aD-~iIlgsP~y~--g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
.+++..+| +||||+-.|. +.+++.++.=++.-..++. +||..-++.|+|.. +........|.+.|..+|.
T Consensus 39 ~~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk----~gk~~~ilvSGg~~-~~~~~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 39 LQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYN----SGKVNYLLLSGDNA-LQSYNEPMTMRKDLIAAGV 111 (239)
T ss_pred HhhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHH----hCCCCEEEEeCCCC-CCCCCHHHHHHHHHHHcCC
Confidence 34444445 6788987764 5677776666665544432 56666677776653 3333456678888877764
No 54
>PRK02551 flavoprotein NrdI; Provisional
Probab=78.58 E-value=16 Score=26.47 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=27.6
Q ss_pred hhCCEEEEecccc-CCC----------chHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 18 AEADGILLGFPTR-FGM----------MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 18 ~~aD~iIlgsP~y-~g~----------~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-.-.|+-+||| .++ ++.++..|+..- ..+....++|+|+
T Consensus 52 ~~~~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsG 103 (154)
T PRK02551 52 PETEPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGSG 103 (154)
T ss_pred ccCCCEEEEEeeecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEeec
Confidence 4446788999999 555 677777777532 2256677888875
No 55
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=74.33 E-value=2.7 Score=27.84 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=36.5
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.+.||++.- ...+.+....+++++.. .||++.++++.+. ....++.+.|..+|+.+-
T Consensus 3 ~D~dGvl~~----g~~~ipga~e~l~~L~~-------~g~~~~~lTNns~------~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 3 FDLDGVLYN----GNEPIPGAVEALDALRE-------RGKPVVFLTNNSS------RSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EESTTTSEE----TTEE-TTHHHHHHHHHH-------TTSEEEEEES-SS------S-HHHHHHHHHHTTTT--
T ss_pred EeCccEeEe----CCCcCcCHHHHHHHHHH-------cCCCEEEEeCCCC------CCHHHHHHHHHhcCcCCC
Confidence 345666654 44456667889999864 6899999987533 234667777788887753
No 56
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=71.16 E-value=4.4 Score=28.14 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=25.3
Q ss_pred hhCCEEEEeccccC-CC----chHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 18 AEADGILLGFPTRF-GM----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 18 ~~aD~iIlgsP~y~-g~----~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-.+=.|+-+|||. |. ++.++..||+.-. -.....++++|+
T Consensus 36 ~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~-------N~~~l~GVigSG 81 (122)
T PF07972_consen 36 EVDEPFVLITPTYGFGENDGGVPKQVIRFLENPD-------NRKLLRGVIGSG 81 (122)
T ss_dssp --SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHH-------HGGGEEEEEEEE
T ss_pred cCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHH-------HHhhheeEEecC
Confidence 33456788899995 55 8999999999421 133466777765
No 57
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=71.14 E-value=30 Score=24.68 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=30.0
Q ss_pred HhhCCEEEEeccccCCC-----chHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 17 LAEADGILLGFPTRFGM-----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~-----~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
+.-.+-.|+-+|||.++ ++.++-.||..- .-..+.-++++|+
T Consensus 37 ~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSG 83 (141)
T COG1780 37 IEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE-------HNRALCRGVIASG 83 (141)
T ss_pred ccCCCCeEEEeccccCCCccCccCHHHHHHhccc-------cchhheEEEEecC
Confidence 55567899999999655 888888888631 2345567777764
No 58
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=65.03 E-value=10 Score=26.99 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~ 67 (152)
.+-+.+||.||++.|++. ++.+++++.. .++.....++.+-|-
T Consensus 64 ~~a~~~ad~IiiavPs~~------~~~~~~~l~~-----~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 64 EEALEDADIIIIAVPSQA------HREVLEQLAP-----YLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHTT-SEEEE-S-GGG------HHHHHHHHTT-----TSHTT-EEEETS-SE
T ss_pred HHHhCcccEEEecccHHH------HHHHHHHHhh-----ccCCCCEEEEecCCc
Confidence 345788999999999964 5778888864 444444445555443
No 59
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=62.41 E-value=30 Score=24.01 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=35.5
Q ss_pred EEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031823 22 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 22 ~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
.||||.+.+....++.++.=++....++. +++.--++.|+|...+........+.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 58899999977666555555554443332 3333345555554332233445667777776663
No 60
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=58.92 E-value=24 Score=24.53 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=37.5
Q ss_pred ccCCCchHHHHHHHHHhcCcc----cc----CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031823 29 TRFGMMAAQFKAFLDATGGLW----RS----QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 29 ~y~g~~~~~~k~fld~l~~~~----~~----~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
+|+.++++..+.|++++...- .. ..+ +.+..++ +|.|..|.-...+..+++.+..+-.-+++.|.
T Consensus 1 IvY~S~TGNte~fv~~lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n~~~gV~gSGn 73 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHNLLRGVAASGN 73 (125)
T ss_pred CEEEcccccHHHHHHHcCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhhcEEEEEEcCC
Confidence 367889999999999886321 01 133 6777777 77664333333444444444443344555553
No 61
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=57.18 E-value=11 Score=26.23 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCCCCHHHHhhCCEEEEeccc
Q 031823 9 VPTITPNELAEADGILLGFPT 29 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~ 29 (152)
-+.++.++|.+||+|||++=.
T Consensus 46 eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 46 ENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred cCcCCHHHHHhCCEEEEEecc
Confidence 356789999999999999865
No 62
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=54.99 E-value=20 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=26.5
Q ss_pred ccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecC
Q 031823 27 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 27 sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G 66 (152)
.|.+.......++.|+++-. .++|+.+++++|+|
T Consensus 7 ~p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGG 40 (302)
T KOG2728|consen 7 VPESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGG 40 (302)
T ss_pred CcccccchhHHHHHHHHHHh------hccCceEEEEecCC
Confidence 47778888888999999964 45777777777765
No 63
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=50.87 E-value=36 Score=29.47 Aligned_cols=83 Identities=13% Similarity=-0.024 Sum_probs=58.5
Q ss_pred CCCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCcc-ccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLW-RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~-~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+..++++.+.+.|||.+.|- -|.+|.-||.|..-+.+.. ....|++--.+++|=+.++...-.-+.+.+.+.|.++
T Consensus 37 ~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qL 116 (574)
T KOG1159|consen 37 MDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQL 116 (574)
T ss_pred ccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHh
Confidence 3455688999999999988887 6889999998866654321 1235678889999875443333344667777788877
Q ss_pred CcEEe
Q 031823 87 GMIFV 91 (152)
Q Consensus 87 g~~~v 91 (152)
|...+
T Consensus 117 GA~~~ 121 (574)
T KOG1159|consen 117 GANSV 121 (574)
T ss_pred Ccccc
Confidence 77654
No 64
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=50.29 E-value=28 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHH--hhCCEEEEecc-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 14 PNEL--AEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i--~~aD~iIlgsP-~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
++++ .++|+|++..- .+.....+.++.|+.+... ++|+++.+.+
T Consensus 53 ~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~ 99 (170)
T cd03140 53 LDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALK-------QGKPVAAICG 99 (170)
T ss_pred hhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHH-------cCCEEEEECh
Confidence 4444 67898776543 3333345678888888742 5677766654
No 65
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=49.75 E-value=1.3e+02 Score=23.72 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCEEEEeccccCCCchHHHHHHHHHhcCccccCCC-CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031823 20 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 20 aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
+|.||+..|.. ..++.+++.+.. .+ +|+.+ +-.|... ......+.+.+...|..+++.++.
T Consensus 60 advVi~~vp~~-----~~~~~v~~~i~~-----~l~~g~iv-id~st~~-----~~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG-----EVTESVIKDLYP-----LLSPGDIV-VDGGNSR-----YKDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc-----hHHHHHHHHHhc-----cCCCCCEE-EECCCCC-----chhHHHHHHHHHHcCCeEEeCCCC
Confidence 69999999974 355666666542 23 34433 2222211 223566777777788888876543
No 66
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.65 E-value=37 Score=22.04 Aligned_cols=42 Identities=17% Similarity=0.023 Sum_probs=33.2
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
...+.++|.||+-+=.-..++...+|....+ .++|+...-+.
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~~~~ 84 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYSRSR 84 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEECCC
Confidence 6789999999999999899999988877766 45676555433
No 67
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=44.88 E-value=1.6e+02 Score=24.45 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=43.7
Q ss_pred CCHHHHhhCCEEEEeccccCCCchHHHH-HHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 12 ITPNELAEADGILLGFPTRFGMMAAQFK-AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~k-~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
+..+.+.+....+..+|-++...-++.- ..+=.+... ....+.||.++++|.+ .. -..+.+.+..+||.+
T Consensus 72 iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~-~g~~L~gktvGIIG~G-~I-------G~~vA~~l~a~G~~V 142 (378)
T PRK15438 72 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER-DGFSLHDRTVGIVGVG-NV-------GRRLQARLEALGIKT 142 (378)
T ss_pred cCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc-CCCCcCCCEEEEECcC-HH-------HHHHHHHHHHCCCEE
Confidence 4456677788888889988765543321 111111111 1247899999999873 21 233555666789998
Q ss_pred ec
Q 031823 91 VP 92 (152)
Q Consensus 91 v~ 92 (152)
+.
T Consensus 143 ~~ 144 (378)
T PRK15438 143 LL 144 (378)
T ss_pred EE
Confidence 85
No 68
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=43.60 E-value=45 Score=25.15 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=26.0
Q ss_pred HhhCCEEEEec---cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 17 LAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 17 i~~aD~iIlgs---P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++|+|+|.- |.+...-...+..|+.++.. ++|+++.+++
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~-------~~k~iaaIC~ 131 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYE-------NGKVVAAVCH 131 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHH-------cCCEEEEEcc
Confidence 44789998864 34444456778888877642 5566665554
No 69
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=43.35 E-value=1.6e+02 Score=24.45 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=43.6
Q ss_pred CCHHHHhhCCEEEEeccccCCCchHHH-HHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 12 ITPNELAEADGILLGFPTRFGMMAAQF-KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~-k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
+..+.+.+....+.-+|-++...-++. -..+=.+... ....+.||.++++|.+ . .-..+.+.+..+||++
T Consensus 72 iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-~g~~l~gktvGIIG~G-~-------IG~~va~~l~a~G~~V 142 (381)
T PRK00257 72 LDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-EGVDLAERTYGVVGAG-H-------VGGRLVRVLRGLGWKV 142 (381)
T ss_pred cCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-cCCCcCcCEEEEECCC-H-------HHHHHHHHHHHCCCEE
Confidence 445667777788888898876554442 1111112111 1247899999999863 2 1233555666789998
Q ss_pred ec
Q 031823 91 VP 92 (152)
Q Consensus 91 v~ 92 (152)
+.
T Consensus 143 ~~ 144 (381)
T PRK00257 143 LV 144 (381)
T ss_pred EE
Confidence 75
No 70
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=42.84 E-value=1.7e+02 Score=23.26 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=42.1
Q ss_pred CHHHHhhC---CEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 13 TPNELAEA---DGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 13 ~~~~i~~a---D~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+++++.+. |..|+..|- ..+...++.+.. +|=+.+++.+.|.. +...+.+.+.....|+.
T Consensus 54 sv~dlp~~~~~Dlavi~vpa------~~v~~~l~e~~~-------~Gvk~avIis~Gf~----e~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 54 SVKEAVEETGANASVIFVPA------PFAADAIFEAID-------AGIELIVCITEGIP----VHDMLKVKRYMEESGTR 116 (286)
T ss_pred CHHHHhhccCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 36677764 999999984 444555555542 45456666665532 22345677777889999
Q ss_pred EecCC
Q 031823 90 FVPIG 94 (152)
Q Consensus 90 ~v~~~ 94 (152)
++|++
T Consensus 117 ilGPN 121 (286)
T TIGR01019 117 LIGPN 121 (286)
T ss_pred EECCC
Confidence 99965
No 71
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=42.34 E-value=28 Score=24.62 Aligned_cols=17 Identities=29% Similarity=0.222 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031823 131 LAQAFHQGKYFAGITKK 147 (152)
Q Consensus 131 ~~~a~~lG~~la~~~~~ 147 (152)
...+.++|+|||++|+-
T Consensus 108 EADa~EFGERiaELAKi 124 (151)
T PF06554_consen 108 EADAQEFGERIAELAKI 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45688999999999874
No 72
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=41.70 E-value=15 Score=28.98 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..|||||++|||
T Consensus 164 ~r~DGliVsTPT 175 (281)
T COG0061 164 FRGDGLIVSTPT 175 (281)
T ss_pred EecCEEEEEcCC
Confidence 469999999998
No 73
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=41.52 E-value=37 Score=26.04 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=20.7
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~ 47 (152)
+.++.++|.|||.||. .++.|++++..
T Consensus 50 l~~l~~~d~iifTS~n-------aV~~~~~~l~~ 76 (255)
T PRK05752 50 LLELDRYCAVIVVSKP-------AARLGLELLDR 76 (255)
T ss_pred HhcCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 4567899999999987 46777777643
No 74
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=40.96 E-value=67 Score=23.89 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhc
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~ 46 (152)
+|....+.+.+..+|+||+-+-.-..--..+.+.|.+.+.
T Consensus 40 ~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 40 EDPDDLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVE 79 (217)
T ss_dssp CSGGCTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHH
T ss_pred eCcccCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 4455566778999999999877611124566666666664
No 75
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=39.79 E-value=38 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++.++|.|||.||. .++.|++++...... .++++++.++|.
T Consensus 45 l~~l~~~d~vvfTS~~-------av~~~~~~l~~~~~~-~~~~~~i~aVG~ 87 (248)
T COG1587 45 LEDLDSADWVVFTSPN-------AVRFFFEALKEQGLD-ALKNKKIAAVGE 87 (248)
T ss_pred HhccccCCEEEEECHH-------HHHHHHHHHHhhccc-ccccCeEEEEcH
Confidence 6667779999999997 678888888653221 456888888873
No 76
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=38.72 E-value=45 Score=26.44 Aligned_cols=45 Identities=18% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHhhCCEEEEecc-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP-~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++++.++|.||+... .......+.+..|+.+.. -++|.++.+.++
T Consensus 70 ~~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 115 (322)
T PRK09393 70 LELLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICSG 115 (322)
T ss_pred ccccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcHH
Confidence 445678999998442 112233667777777653 266676666654
No 77
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=37.68 E-value=1.7e+02 Score=23.66 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=36.3
Q ss_pred CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHH
Q 031823 52 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELEL 131 (152)
Q Consensus 52 ~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~ 131 (152)
+.++|+.++.+|-+ ......++.....+||.+.-.. | ++ ..|+++-+
T Consensus 149 g~l~g~k~a~vGDg-------NNv~nSl~~~~a~~G~dv~ia~-----P--------------------k~-~~p~~~~~ 195 (310)
T COG0078 149 GSLKGLKLAYVGDG-------NNVANSLLLAAAKLGMDVRIAT-----P--------------------KG-YEPDPEVV 195 (310)
T ss_pred CcccCcEEEEEcCc-------chHHHHHHHHHHHhCCeEEEEC-----C--------------------Cc-CCcCHHHH
Confidence 35899999888754 2346667666677788764210 0 11 35788888
Q ss_pred HHHHHHHHH
Q 031823 132 AQAFHQGKY 140 (152)
Q Consensus 132 ~~a~~lG~~ 140 (152)
+.|+++++.
T Consensus 196 ~~a~~~a~~ 204 (310)
T COG0078 196 EKAKENAKE 204 (310)
T ss_pred HHHHHHHHh
Confidence 888887653
No 78
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.53 E-value=58 Score=24.23 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=27.0
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
...+.++|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 47 ~~~~~~~d~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 88 (249)
T PRK05928 47 QLAALGADWVIFTSKN-------AVEFLLSALKKKK-LKWPKNKKYAAIG 88 (249)
T ss_pred HhhCCCCCEEEEECHH-------HHHHHHHHHHhcC-cCCCCCCEEEEEC
Confidence 4677889999999987 5677777664111 1234555555554
No 79
>PRK10444 UMP phosphatase; Provisional
Probab=36.77 E-value=52 Score=25.34 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=37.3
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
.+.||+++-.- .+.+....+++++.. +||++.+++..+. .....+.+.|..+|+.+
T Consensus 6 ~DlDGtL~~~~----~~~p~a~~~l~~L~~-------~g~~~~~~Tn~~~------~~~~~~~~~l~~~G~~~ 61 (248)
T PRK10444 6 CDIDGVLMHDN----VAVPGAAEFLHRILD-------KGLPLVLLTNYPS------QTGQDLANRFATAGVDV 61 (248)
T ss_pred EeCCCceEeCC----eeCccHHHHHHHHHH-------CCCeEEEEeCCCC------CCHHHHHHHHHHcCCCC
Confidence 46788887664 456677788888863 7889888775432 22455666677777754
No 80
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.73 E-value=20 Score=28.49 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 175 ~~~DGlIVSTPT 186 (287)
T PRK14077 175 YFGDGVIVATPA 186 (287)
T ss_pred EEcCEEEEeCCC
Confidence 359999999998
No 81
>PRK08818 prephenate dehydrogenase; Provisional
Probab=36.72 E-value=22 Score=29.37 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=17.5
Q ss_pred CCCCCCCCCCHHHHhhCCEEEEeccc
Q 031823 4 GPKSDVPTITPNELAEADGILLGFPT 29 (152)
Q Consensus 4 ~~~~~~~~~~~~~i~~aD~iIlgsP~ 29 (152)
|+.|+...-..+.+.+||.|||++|+
T Consensus 36 D~~d~~~~~~~~~v~~aDlVilavPv 61 (370)
T PRK08818 36 DPADPGSLDPATLLQRADVLIFSAPI 61 (370)
T ss_pred cCCccccCCHHHHhcCCCEEEEeCCH
Confidence 44443332224567899999999998
No 82
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=36.70 E-value=55 Score=24.24 Aligned_cols=32 Identities=19% Similarity=0.027 Sum_probs=26.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhc
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~ 46 (152)
.+-+..||.+| |--.|++++-+.+.-|||||.
T Consensus 117 ~evye~aDynl-gvg~qpHSvrAAlAI~LDRL~ 148 (176)
T PRK03958 117 REVYELADWNV-AVGNQPHSEVAALAVFLDRLF 148 (176)
T ss_pred HHHHhhCCEEe-ccCCCChHHHHHHHHHHHHhc
Confidence 45566788877 888888999999999999986
No 83
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.67 E-value=1.8e+02 Score=23.98 Aligned_cols=78 Identities=10% Similarity=-0.065 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHH
Q 031823 7 SDVPTITPNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL 83 (152)
Q Consensus 7 ~~~~~~~~~~i~---~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l 83 (152)
||+..+ ..++. ....|.+-||-|-++.+.....+++.+........-..+.+.++|.. +. + -+.++...|
T Consensus 104 DDi~~v-~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~-~~--~---d~~el~~lL 176 (396)
T cd01979 104 MDLEGA-APRLSAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSL-PD--I---VEDQLRREL 176 (396)
T ss_pred cCHHHH-HHHHhhcCCCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeC-Cc--c---hHHHHHHHH
Confidence 444444 44443 46788888999888776666777776654332222344556777765 22 1 156677778
Q ss_pred HHcCcEEe
Q 031823 84 VHHGMIFV 91 (152)
Q Consensus 84 ~~~g~~~v 91 (152)
..+|+.++
T Consensus 177 ~~~Gi~v~ 184 (396)
T cd01979 177 EQLGIPVV 184 (396)
T ss_pred HHcCCeEE
Confidence 88999886
No 84
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=35.48 E-value=76 Score=24.49 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHH-hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCC-CCC----cchHHHHHHHHHHcC
Q 031823 14 PNEL-AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG-GGQ----ETTPLTAITQLVHHG 87 (152)
Q Consensus 14 ~~~i-~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~-gg~----~~~~~~~~~~l~~~g 87 (152)
.++| .+||++||+.|.- .++..-...||+.. .+|..+.++....... .+. ......+...|..+|
T Consensus 191 ~~~IP~~~d~Lvi~~P~~--~ls~~e~~~l~~yl-------~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~G 261 (271)
T PF09822_consen 191 NEEIPDDADVLVIAGPKT--DLSEEELYALDQYL-------MNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYG 261 (271)
T ss_pred ccccCCCCCEEEEECCCC--CCCHHHHHHHHHHH-------HcCCeEEEEECCcccccccccccccccccCHHHHHHHcC
Confidence 3456 7899999999995 23344444444432 1444555555432110 000 000223555566788
Q ss_pred cEEe
Q 031823 88 MIFV 91 (152)
Q Consensus 88 ~~~v 91 (152)
+.+-
T Consensus 262 i~~~ 265 (271)
T PF09822_consen 262 IRIN 265 (271)
T ss_pred CEeC
Confidence 8764
No 85
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=35.47 E-value=1.1e+02 Score=22.65 Aligned_cols=43 Identities=16% Similarity=-0.010 Sum_probs=29.6
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031823 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~ 67 (152)
.-+.||.+|+.-|+ ..+|.+.++...|.+ .+=|.+.++|+...
T Consensus 67 SPRhADvLlVtG~v-T~km~~~l~~~yeqm--------PePK~VIA~G~CA~ 109 (173)
T PRK14818 67 SPRQADFMIVAGTL-TYKMAERARLLYDQM--------PEPKYVISMGSCSN 109 (173)
T ss_pred CcccccEEEEeCcC-ccccHHHHHHHHHhC--------CCCCEEEEeccccc
Confidence 44678988888777 555666666666554 36678888888755
No 86
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.17 E-value=19 Score=28.42 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 156 ~~~DGlIVsTPT 167 (271)
T PRK01185 156 FKADGVIVATPT 167 (271)
T ss_pred EEeeEEEEeCCC
Confidence 469999999998
No 87
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.94 E-value=22 Score=28.58 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 179 ~~~DGlIVsTPT 190 (305)
T PRK02649 179 IAADGVILSTPT 190 (305)
T ss_pred EecCeEEEeCCC
Confidence 469999999998
No 88
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.88 E-value=23 Score=28.53 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=10.7
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 183 ~~~DGlIVsTPT 194 (306)
T PRK03372 183 FGCDGVLVSTPT 194 (306)
T ss_pred EecCEEEEeCCC
Confidence 368999999998
No 89
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=34.24 E-value=45 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=25.9
Q ss_pred HHH--HhhCCEEEEeccc---cCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 14 PNE--LAEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~--i~~aD~iIlgsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
+++ ..++|+||+.... ......+.+..|+.++.. ++|+++.+.+
T Consensus 56 ~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~-------~~~~i~~ic~ 104 (179)
T TIGR01383 56 LEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQES-------KGKLVAAICA 104 (179)
T ss_pred HHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHH-------CCCEEEEECh
Confidence 444 4578999986532 111234567777776642 5677666654
No 90
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.15 E-value=20 Score=28.62 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 174 ~~~DGlIVsTPT 185 (292)
T PRK01911 174 YWADGLIVATPT 185 (292)
T ss_pred EeeceeEECCCC
Confidence 359999999999
No 91
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=33.89 E-value=73 Score=21.92 Aligned_cols=12 Identities=42% Similarity=0.711 Sum_probs=9.1
Q ss_pred hCCEEEE-ecccc
Q 031823 19 EADGILL-GFPTR 30 (152)
Q Consensus 19 ~aD~iIl-gsP~y 30 (152)
-||+|++ |+|.-
T Consensus 52 GADGV~V~gC~~g 64 (124)
T PF02662_consen 52 GADGVLVAGCHPG 64 (124)
T ss_pred CCCEEEEeCCCCC
Confidence 3999988 77754
No 92
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.64 E-value=24 Score=28.21 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 177 ~~gDGlIVsTPt 188 (305)
T PRK02645 177 YQGDGLIVSTPT 188 (305)
T ss_pred EecCEEEEecCC
Confidence 379999999999
No 93
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.63 E-value=24 Score=27.72 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=10.7
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 147 ~~~DGlIVsTPt 158 (264)
T PRK03501 147 FRGDGMVVSTPT 158 (264)
T ss_pred EecCEEEEeCCC
Confidence 369999999998
No 94
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.50 E-value=25 Score=27.64 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 146 ~~gDGlIVsTpt 157 (265)
T PRK04885 146 FRGDGLCVSTPT 157 (265)
T ss_pred EEcCEEEEECCC
Confidence 469999999998
No 95
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=33.48 E-value=69 Score=23.49 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
...+..+|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 44 ~~~~~~~~~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 85 (239)
T cd06578 44 LADLDEYDWLIFTSPN-------AVEAFFEALEELG-LRALAGLKIAAVG 85 (239)
T ss_pred HHhcCCCCEEEEECHH-------HHHHHHHHHHhhC-CccccCCEEEEEC
Confidence 3455579999999995 5577776664321 1234566665554
No 96
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.81 E-value=72 Score=28.04 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 54 LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 54 l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+|+.++++|+.|+ |....+..++.++...|=.+|+
T Consensus 376 ~kGekVaIvG~nGs---GKSTilr~LlrF~d~sG~I~Id 411 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGS---GKSTILRLLLRFFDYSGSILID 411 (591)
T ss_pred cCCCEEEEECCCCC---CHHHHHHHHHHHhccCCcEEEC
Confidence 47999999998654 4556677778887777777776
No 97
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.76 E-value=24 Score=27.74 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 135 ~~gDGlIVsTPt 146 (259)
T PRK00561 135 YRGSGLLIGPRT 146 (259)
T ss_pred EecCEEEEeCch
Confidence 469999999998
No 98
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=32.73 E-value=55 Score=23.70 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=26.1
Q ss_pred HHHHhhCCEEEEecc---cc--CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 14 PNELAEADGILLGFP---TR--FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP---~y--~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++..++|+||+... .. ...-...+..|+.+... ++|+++.+++
T Consensus 64 ~~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~ 112 (195)
T cd03138 64 LADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHA-------NGATVAAACT 112 (195)
T ss_pred ccccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHH-------cCCEEEEecH
Confidence 345678999998442 11 12335667777776642 5666666654
No 99
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.67 E-value=26 Score=27.29 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 144 ~~~DG~ivsTpt 155 (256)
T PRK14075 144 FFADGVVISTPT 155 (256)
T ss_pred EecCEEEEeCCC
Confidence 469999999999
No 100
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.60 E-value=25 Score=28.07 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=10.4
Q ss_pred hCCEEEEeccc
Q 031823 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||+|++|||
T Consensus 180 ~~DGlIVsTPT 190 (296)
T PRK04539 180 RSDGLIVSTPT 190 (296)
T ss_pred ecCeEEEECCC
Confidence 69999999999
No 101
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.41 E-value=25 Score=28.04 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 173 ~~~DGlivsTpt 184 (295)
T PRK01231 173 QRSDGLIVSTPT 184 (295)
T ss_pred EEcceEEEeCCC
Confidence 479999999999
No 102
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=31.99 E-value=1.2e+02 Score=21.22 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..+.+||++|+.--.-...-....+.++..+.. ...+.++|+.++++-
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK 109 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANK 109 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeC
Confidence 446789999996333222223344556666542 234578999998874
No 103
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.98 E-value=27 Score=27.61 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=10.5
Q ss_pred hCCEEEEeccc
Q 031823 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||||++|||
T Consensus 155 ~~DGlIVsTPt 165 (272)
T PRK02231 155 RSDGLIISTPT 165 (272)
T ss_pred ecCeEEEECCC
Confidence 69999999999
No 104
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=31.91 E-value=1.2e+02 Score=23.31 Aligned_cols=42 Identities=17% Similarity=-0.048 Sum_probs=27.2
Q ss_pred HhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031823 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~ 67 (152)
=+.||.+|+.-|+ -..|.+.++...+.+ .+=|.+.++|+...
T Consensus 69 PRhADvliVtG~V-T~km~~~L~rlyeqm--------PePK~VIA~GaCA~ 110 (225)
T CHL00023 69 PRQADLILTAGTV-TMKMAPSLVRLYEQM--------PEPKYVIAMGACTI 110 (225)
T ss_pred cccceEEEEecCC-ccccHHHHHHHHHhc--------CCCCeEEEEccccc
Confidence 3568888887766 445555555555543 35578888888754
No 105
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.84 E-value=27 Score=27.56 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 163 ~~gDGvIvsTpt 174 (277)
T PRK03708 163 VRADGLIISTPT 174 (277)
T ss_pred EecCEEEEeCCC
Confidence 469999999998
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=31.69 E-value=99 Score=21.60 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=31.7
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+....-...-...++.++..+.. ...+.++++.++++-
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 109 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANK 109 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeC
Confidence 456889999998776554434556666666642 124566788888874
No 107
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=31.59 E-value=33 Score=23.88 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=24.9
Q ss_pred CC-EEEEe-ccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031823 20 AD-GILLG-FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 20 aD-~iIlg-sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
+| .|||| .+.+.+.+++....=+|....++. +|..--++.|+|...+......+.+.+.+...|+
T Consensus 2 aD~ivVlG~~~~~~~~~~~~~~~R~~~a~~L~~----~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gv 68 (155)
T PF02698_consen 2 ADAIVVLGSALDPDGQLSPESRERLDEAARLYK----AGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGV 68 (155)
T ss_dssp -SEEEEES-----------S-HHHHHHHHHHHH-----HHT--EEEE--SSTTHTS-HHHHHHHHHHHT--
T ss_pred CcEEEECCcCccccccccHhHHHHHHHHHHHHh----cCCCCeEEECCCCCCCCCCCHHHHHHHHHHhccc
Confidence 44 45667 444456666666655565544433 2223335556554333233456777778777764
No 108
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=30.94 E-value=29 Score=27.01 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=10.4
Q ss_pred hCCEEEEeccc
Q 031823 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||||++||+
T Consensus 133 ~gDGlIVSTPt 143 (246)
T PRK04761 133 VCDGVLVATPA 143 (246)
T ss_pred ecCeEEEeCCc
Confidence 69999999999
No 109
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=30.86 E-value=1.5e+02 Score=23.25 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031823 20 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 20 aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
+|.||+..|. ...++..++.+.. .++...+.+-.+.++ . .....+.+.+...|..+++.+.
T Consensus 60 ~dvvi~~v~~-----~~~~~~v~~~l~~-----~l~~g~ivid~st~~----~-~~~~~~~~~~~~~g~~~~dapv 120 (301)
T PRK09599 60 PRVVWLMVPA-----GEITDATIDELAP-----LLSPGDIVIDGGNSY----Y-KDDIRRAELLAEKGIHFVDVGT 120 (301)
T ss_pred CCEEEEEecC-----CcHHHHHHHHHHh-----hCCCCCEEEeCCCCC----h-hHHHHHHHHHHHcCCEEEeCCC
Confidence 6999999987 2244445555432 222222222222212 1 2345566777788999887554
No 110
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=30.81 E-value=28 Score=27.72 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 174 ~~gDGlIVsTPt 185 (291)
T PRK02155 174 QRSDGLIVATPT 185 (291)
T ss_pred EecCeEEEECCC
Confidence 379999999998
No 111
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=30.40 E-value=98 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=20.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~ 47 (152)
.+.+.++|.|||++|+ ..+..++..+..
T Consensus 40 ~~~~~~~DlvvlavP~------~~~~~~l~~~~~ 67 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV------SAIEDVLEEIAP 67 (258)
T ss_dssp HHHGGCCSEEEE-S-H------HHHHHHHHHHHC
T ss_pred HhHhcCCCEEEEcCCH------HHHHHHHHHhhh
Confidence 5678999999999998 557777888764
No 112
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.84 E-value=2.2e+02 Score=21.34 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=46.6
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
+.|+. +.++.+.|+|.+|-- ++....+....+++.. -||.++-+.+- ..+....+.+..+|
T Consensus 92 ~Ap~~-L~~~~~~daiFIGGg---~~i~~ile~~~~~l~~-------ggrlV~naitl--------E~~~~a~~~~~~~g 152 (187)
T COG2242 92 DAPEA-LPDLPSPDAIFIGGG---GNIEEILEAAWERLKP-------GGRLVANAITL--------ETLAKALEALEQLG 152 (187)
T ss_pred cchHh-hcCCCCCCEEEECCC---CCHHHHHHHHHHHcCc-------CCeEEEEeecH--------HHHHHHHHHHHHcC
Confidence 44555 556668999999876 7888888888888752 56666555542 23455667778888
Q ss_pred c-EEecCCC
Q 031823 88 M-IFVPIGY 95 (152)
Q Consensus 88 ~-~~v~~~~ 95 (152)
+ +++-..+
T Consensus 153 ~~ei~~v~i 161 (187)
T COG2242 153 GREIVQVQI 161 (187)
T ss_pred CceEEEEEe
Confidence 8 6665443
No 113
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.64 E-value=2.6e+02 Score=23.35 Aligned_cols=78 Identities=10% Similarity=-0.066 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHh----hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031823 7 SDVPTITPNELA----EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 7 ~~~~~~~~~~i~----~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~ 82 (152)
||+..+ .+++. ....|.+-||-|.++.......++..+........-..+.+.++|... . +. ..++...
T Consensus 114 DDi~~v-~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~-~--~d---~~el~~l 186 (427)
T PRK02842 114 LDLEGL-AERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLA-D--VV---EDQLTLE 186 (427)
T ss_pred CCHHHH-HHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCC-c--ch---HHHHHHH
Confidence 455555 45444 345777779999887555555555555433222222345557777652 1 21 3557777
Q ss_pred HHHcCcEEe
Q 031823 83 LVHHGMIFV 91 (152)
Q Consensus 83 l~~~g~~~v 91 (152)
|..+|++++
T Consensus 187 L~~~Gi~v~ 195 (427)
T PRK02842 187 FKKLGIGVV 195 (427)
T ss_pred HHHcCCeeE
Confidence 777898875
No 114
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=29.61 E-value=67 Score=24.59 Aligned_cols=42 Identities=5% Similarity=-0.136 Sum_probs=27.2
Q ss_pred HHhhCCEEEEec---cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 16 ELAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 16 ~i~~aD~iIlgs---P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
+..++|+|+|-- |++...-+..++.++.++.. +||++++++.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~-------~gK~iaAICh 135 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYA-------NGGVVAAVCH 135 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECh
Confidence 356899988743 55544557777888877653 5666666654
No 115
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=29.48 E-value=56 Score=22.66 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=25.8
Q ss_pred CHHHH--hhCCEEEEeccc---cCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 13 TPNEL--AEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 13 ~~~~i--~~aD~iIlgsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++++ .++|+||+..-. ....-.+.+..|+.++.. ++|+++.+++
T Consensus 52 ~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~-------~~~~i~~ic~ 101 (163)
T cd03135 52 TLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNA-------KGKLIAAICA 101 (163)
T ss_pred CHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHH-------cCCEEEEEch
Confidence 35555 689998885422 011124556667766542 5677666654
No 116
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=28.94 E-value=74 Score=20.93 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=32.8
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++..+||.|||-|-+.-.+.-..+...+.++.... =+++++++-|.+
T Consensus 32 ~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~----~~~~~ivv~GC~ 78 (98)
T PF00919_consen 32 DDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLK----KPGAKIVVTGCM 78 (98)
T ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhc----CCCCEEEEEeCc
Confidence 45578999999999988888888888777776421 134455555544
No 117
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=1.2e+02 Score=22.06 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=30.7
Q ss_pred CCCCCeEEEEEecCCCCC--CCcchHHHHHHHHHHcCcEEecCCC
Q 031823 53 QLAGKPAGIFYSTGSQGG--GQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 53 ~l~gK~~~~~~s~G~~~g--g~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
.++||++.++-++.- .| -+-..++.+.+.+...|+.+++.+.
T Consensus 22 ~~~GkVlLIVNtASk-CGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASK-CGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccc-cCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 578999988877632 33 2234677888888899999998753
No 118
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=28.79 E-value=98 Score=24.13 Aligned_cols=39 Identities=13% Similarity=-0.099 Sum_probs=24.0
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
++++.++|.|||.||+ .++.|+..+. ...+.+.+++++|
T Consensus 64 l~~l~~~d~iiftS~N-------AV~~~~~~~~----~~~~~~~~~~AVG 102 (266)
T PRK08811 64 LRQALAAPIVVFTSPA-------AVRAAHRLLP----LQRPARAHWLSVG 102 (266)
T ss_pred HhhcccCCEEEEECHH-------HHHHHHHHhc----ccCccCCeEEEEC
Confidence 4667799999999987 4555553321 1233455555554
No 119
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.11 E-value=3.7e+02 Score=22.68 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHhh-CCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHHHcCcEE
Q 031823 14 PNELAE-ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~-aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~--~~~~~~~~~~l~~~g~~~ 90 (152)
++++.+ -|..|+..|. ..+...++.+.. .|-+.+++.+.|....+. ....+.+.+.....|+.+
T Consensus 58 l~~lp~~~Dlavi~vp~------~~~~~~l~e~~~-------~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girv 124 (447)
T TIGR02717 58 VLEIPDPVDLAVIVVPA------KYVPQVVEECGE-------KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRL 124 (447)
T ss_pred HHHCCCCCCEEEEecCH------HHHHHHHHHHHh-------cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEE
Confidence 344433 4888888883 455666666542 333444555554422121 122356777778899999
Q ss_pred ecCC
Q 031823 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
+|.+
T Consensus 125 lGPn 128 (447)
T TIGR02717 125 LGPN 128 (447)
T ss_pred EecC
Confidence 9864
No 120
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.89 E-value=2.1e+02 Score=23.58 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCcccc----CCCCCCeEEEEEecCCCCCCCcchHHHH
Q 031823 7 SDVPTITPNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRS----QQLAGKPAGIFYSTGSQGGGQETTPLTA 79 (152)
Q Consensus 7 ~~~~~~~~~~i~---~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~----~~l~gK~~~~~~s~G~~~gg~~~~~~~~ 79 (152)
||+..+ .+++. ....|.+-||-|.++........++.+...+.. ..-..+.+-+++...+. + -+.++
T Consensus 103 dDi~~v-~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~--~---d~~el 176 (410)
T cd01968 103 DDIDAV-CKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA--G---ELWGV 176 (410)
T ss_pred cCHHHH-HHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc--c---cHHHH
Confidence 455555 44443 467888889999887655555454444332211 11124567777765442 2 24567
Q ss_pred HHHHHHcCcEEec
Q 031823 80 ITQLVHHGMIFVP 92 (152)
Q Consensus 80 ~~~l~~~g~~~v~ 92 (152)
...|..+|++++.
T Consensus 177 ~~lL~~~Gl~v~~ 189 (410)
T cd01968 177 KPLLEKLGIRVLA 189 (410)
T ss_pred HHHHHHcCCeEEE
Confidence 7777788988763
No 121
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=27.78 E-value=3.1e+02 Score=21.81 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=45.7
Q ss_pred CCCHHHHhhCCEEEEeccccCCCchHHH-----HHHHHHhc--------Cccc-----------cCCCCCCeEEEEEecC
Q 031823 11 TITPNELAEADGILLGFPTRFGMMAAQF-----KAFLDATG--------GLWR-----------SQQLAGKPAGIFYSTG 66 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~g~~~~~~-----k~fld~l~--------~~~~-----------~~~l~gK~~~~~~s~G 66 (152)
-+..+...+-...|.-+|-|+...-+++ -.+..++. ..|. ...+.||.++++|.+
T Consensus 76 ~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G- 154 (311)
T PRK08410 76 NVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLG- 154 (311)
T ss_pred cccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCC-
Confidence 3456777888888999999987654332 22222221 1232 136899999999863
Q ss_pred CCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 67 SQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 67 ~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
. .-+.+.+.+..+||+++.
T Consensus 155 ~-------IG~~vA~~~~~fgm~V~~ 173 (311)
T PRK08410 155 T-------IGKRVAKIAQAFGAKVVY 173 (311)
T ss_pred H-------HHHHHHHHHhhcCCEEEE
Confidence 2 123344555678999885
No 122
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=27.61 E-value=1.3e+02 Score=22.89 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=34.9
Q ss_pred HhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031823 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~ 67 (152)
.-.|.++++|+-|.+.++++.+...+-.+. +-..+--++.+...||
T Consensus 106 ~ggc~gvl~gsfti~sntp~~~a~al~~i~-----gv~a~aa~~av~~~g~ 151 (278)
T PF11038_consen 106 FGGCKGVLLGSFTINSNTPPALASALSAIT-----GVVAGAAAVAVVVTGG 151 (278)
T ss_pred cCCcceEEEeeEEecCCCcHHHHHHHHHHh-----hhhhcceEEEEEEecC
Confidence 345889999999999999999888877774 3445666666666665
No 123
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=27.59 E-value=1.5e+02 Score=22.28 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=27.5
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
+.||.+|+.-|+ ..++...++...+.+ .+=|.+.++|+....
T Consensus 66 R~ADvllVtG~V-t~km~~~l~~~y~qm--------PePK~VIA~GaCA~s 107 (189)
T PRK14813 66 RQSDLMIVAGTV-TMKMAERVVRLYEQM--------PEPRYVLSMGSCSNC 107 (189)
T ss_pred ccceEEEEeccC-chhhHHHHHHHHHhC--------CCCCEEEEecccccC
Confidence 458888887666 445555555555554 366788888987653
No 124
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.50 E-value=2.1e+02 Score=23.81 Aligned_cols=81 Identities=11% Similarity=0.031 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHh-------hCCEEEEeccccCCCchHHHHHHHHHhcCccccCC--CCCCeEEEEEecCCCCCCCcchHH
Q 031823 7 SDVPTITPNELA-------EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQ--LAGKPAGIFYSTGSQGGGQETTPL 77 (152)
Q Consensus 7 ~~~~~~~~~~i~-------~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~--l~gK~~~~~~s~G~~~gg~~~~~~ 77 (152)
||+..+ .+++. ....+.+-||-|.++........+..+...+.... -+.+.+-+++.+... .+ -+.
T Consensus 98 dDi~~v-~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~-~~---d~~ 172 (428)
T cd01965 98 DDVAGF-IKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLT-PG---DVR 172 (428)
T ss_pred CCHHHH-HHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCC-cc---CHH
Confidence 455555 55554 45677888999988776665555555543221111 234456666543221 11 256
Q ss_pred HHHHHHHHcCcEEec
Q 031823 78 TAITQLVHHGMIFVP 92 (152)
Q Consensus 78 ~~~~~l~~~g~~~v~ 92 (152)
++...|..+|++++.
T Consensus 173 el~~lL~~~Gl~v~~ 187 (428)
T cd01965 173 EIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHcCCCEEE
Confidence 777788888988765
No 125
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=26.90 E-value=1.3e+02 Score=23.10 Aligned_cols=29 Identities=10% Similarity=-0.166 Sum_probs=19.1
Q ss_pred hhCCEEEEe---ccccCCCchHHHHHHHHHhc
Q 031823 18 AEADGILLG---FPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 18 ~~aD~iIlg---sP~y~g~~~~~~k~fld~l~ 46 (152)
.++|+|++- .|++...-...+..++.++.
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~ 126 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAI 126 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHH
Confidence 589998874 35555555666777776654
No 126
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.78 E-value=65 Score=23.81 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=11.9
Q ss_pred HHHHhhCCEEEEecc
Q 031823 14 PNELAEADGILLGFP 28 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP 28 (152)
.+++.++|+|||+-+
T Consensus 33 ~~~~~~~d~iii~G~ 47 (200)
T PRK13143 33 PEEILDADGIVLPGV 47 (200)
T ss_pred HHHHccCCEEEECCC
Confidence 456789999999775
No 127
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.77 E-value=3.1e+02 Score=22.72 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHh----hCCEEEEeccccCCC-chHH----HHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHH
Q 031823 7 SDVPTITPNELA----EADGILLGFPTRFGM-MAAQ----FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPL 77 (152)
Q Consensus 7 ~~~~~~~~~~i~----~aD~iIlgsP~y~g~-~~~~----~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~ 77 (152)
||+..+ ++++. +...|.+-||-|.+. ...- ++.+++.+........-..+.+-+++..-+. + -+.
T Consensus 105 dDi~~v-~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~-~----d~~ 178 (415)
T cd01977 105 DDIKAV-AKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQ-G----DTE 178 (415)
T ss_pred CCHHHH-HHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCc-c----cHH
Confidence 455555 44443 366888889999874 3322 3456666553211112234567777754332 2 245
Q ss_pred HHHHHHHHcCcEEec
Q 031823 78 TAITQLVHHGMIFVP 92 (152)
Q Consensus 78 ~~~~~l~~~g~~~v~ 92 (152)
++...|..+|++++.
T Consensus 179 ei~~lL~~~Gl~v~~ 193 (415)
T cd01977 179 VLQKYFERMGIQVLS 193 (415)
T ss_pred HHHHHHHHcCCeEEE
Confidence 677777888999863
No 128
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=26.71 E-value=94 Score=22.25 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHHhhCCEEEEec-cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 15 NELAEADGILLGF-PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 15 ~~i~~aD~iIlgs-P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
++..++|.||+.. +.....-.+.+..|+.+... ++|.++.+++
T Consensus 60 ~~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~-------~~~~i~aic~ 103 (185)
T cd03136 60 EDAPPLDYLFVVGGLGARRAVTPALLAWLRRAAR-------RGVALGGIDT 103 (185)
T ss_pred cccCCCCEEEEeCCCCccccCCHHHHHHHHHHHh-------cCCEEEEEcH
Confidence 3556789998832 11113345566667766532 5566665554
No 129
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=26.66 E-value=77 Score=28.27 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
+.++.++|.|||.||. .++.|++++...| +.+.+++++|
T Consensus 50 l~~L~~yd~iIFTS~n-------AV~~~~~~l~~~~----~~~~~i~AVG 88 (656)
T PRK06975 50 LARLSDYALVVFVSPN-------AVDRALARLDAIW----PHALPVAVVG 88 (656)
T ss_pred HHhCCCCCEEEEECHH-------HHHHHHHHHHhhC----ccCCeEEEEC
Confidence 4677899999999997 5677777765332 2344555554
No 130
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=26.14 E-value=3.3e+02 Score=23.61 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHh----hCCEEEEeccccCC-CchH----HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHH
Q 031823 7 SDVPTITPNELA----EADGILLGFPTRFG-MMAA----QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPL 77 (152)
Q Consensus 7 ~~~~~~~~~~i~----~aD~iIlgsP~y~g-~~~~----~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~ 77 (152)
||+..+ ..++. ....|-+-||-|.| +.++ .++.+++++........-....+-+++.+-+. |. +.
T Consensus 145 DDi~av-~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~-gD----~~ 218 (513)
T TIGR01861 145 DDIAAI-AKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQ-GD----QE 218 (513)
T ss_pred CCHHHH-HHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCc-cC----HH
Confidence 566666 44433 35688889999987 3333 47788887653211111112334567665432 22 45
Q ss_pred HHHHHHHHcCcEEec
Q 031823 78 TAITQLVHHGMIFVP 92 (152)
Q Consensus 78 ~~~~~l~~~g~~~v~ 92 (152)
.+...|..+|+.++.
T Consensus 219 eik~lLe~~Gl~v~~ 233 (513)
T TIGR01861 219 VMVDYFQRMGIQVLS 233 (513)
T ss_pred HHHHHHHHCCCeEEE
Confidence 677777788999874
No 131
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=25.85 E-value=93 Score=22.60 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=26.5
Q ss_pred HHHH--hhCCEEEEeccc---cCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNEL--AEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i--~~aD~iIlgsP~---y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++++ .++|+|++..-. ....-.+.+..|+.+.. -+||+++.++++
T Consensus 59 l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 108 (196)
T PRK11574 59 LVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICAA 108 (196)
T ss_pred HHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECHh
Confidence 4454 368998885321 11122345677776654 278888887764
No 132
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=25.73 E-value=2.1e+02 Score=23.16 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=44.3
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCcccc----CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRS----QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~----~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.....+.+-+|-|.++........+..+...+.. ..-+.+.+-+++..... . .-+.++...|..+|++++.
T Consensus 110 ~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~--~--~d~~el~~ll~~~G~~v~~ 184 (399)
T cd00316 110 IGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLG--G--GDLRELKRLLEEMGIRVNA 184 (399)
T ss_pred hCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCc--h--hhHHHHHHHHHHcCCcEEE
Confidence 4678999999999876766655555555433221 23345567777764321 1 2356677777888988764
No 133
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=25.70 E-value=1.1e+02 Score=21.71 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=26.4
Q ss_pred HHHHhhCCEEEEeccccC--CCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~--g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
+++..++|+||+..-... ..-.+.+..|+.+... ++|+++.+.++
T Consensus 57 ~~~~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~-------~~k~i~aic~g 103 (183)
T cd03139 57 FADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAA-------RAKYVTSVCTG 103 (183)
T ss_pred cccCCCCCEEEECCCcchhhhccCHHHHHHHHHhcc-------cCCEEEEEchH
Confidence 344557999998753211 1224556777766542 67777766553
No 134
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=25.48 E-value=1.3e+02 Score=21.46 Aligned_cols=47 Identities=26% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
-+..+|++|+..-.....-....+..++++.. ...+.++|+.++++-
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK 127 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNK 127 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeC
Confidence 35689999997655443333445666666542 234578888888874
No 135
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=25.46 E-value=2.7e+02 Score=23.21 Aligned_cols=83 Identities=18% Similarity=0.029 Sum_probs=44.9
Q ss_pred CCCCCCCHHHH--hhCCEEEEeccccCCCchHH----HHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHH
Q 031823 7 SDVPTITPNEL--AEADGILLGFPTRFGMMAAQ----FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAI 80 (152)
Q Consensus 7 ~~~~~~~~~~i--~~aD~iIlgsP~y~g~~~~~----~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~ 80 (152)
||+..+ .+++ .....|.+-||-|.++...- ++.+++++... ...-..+.+-+++.+.........-+.++.
T Consensus 103 dDi~~v-~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~--~~~~~~~~VNiiG~~~~~~~~~~~d~~elk 179 (427)
T cd01971 103 DDVGAV-VSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVGQ--SEEKEPGLVNLWGPVPYQDPFWRGDLEEIK 179 (427)
T ss_pred cCHHHH-HHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhccC--CCCCCCCeEEEEeccCCccccccccHHHHH
Confidence 444444 4444 34679999999998876555 44555544321 001233456667643111110011256677
Q ss_pred HHHHHcCcEEec
Q 031823 81 TQLVHHGMIFVP 92 (152)
Q Consensus 81 ~~l~~~g~~~v~ 92 (152)
..|..+|++++.
T Consensus 180 ~lL~~~Gl~v~~ 191 (427)
T cd01971 180 RVLEGIGLKVNI 191 (427)
T ss_pred HHHHHCCCeEEE
Confidence 777888988753
No 136
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.25 E-value=1.7e+02 Score=23.49 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 40 AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 40 ~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.|++.+......+.|.||+++++..-+.. ......+.+.+...|..+.+
T Consensus 67 ~f~~~~~~~lv~g~L~g~~V~vV~~p~a~----~~~~~~v~~~L~~AGA~v~g 115 (308)
T PF11382_consen 67 QFIAAVAPRLVAGRLTGRSVAVVTLPGAD----DEDVDAVRELLEQAGATVTG 115 (308)
T ss_pred HHHHHHHHHHhcCccCCCEEEEEEcCCCC----hHHHHHHHHHHHHCCCeEEE
Confidence 34444333333579999999999864332 23467788888889998876
No 137
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=25.08 E-value=40 Score=28.20 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=11.3
Q ss_pred hhCCEEEEecccc
Q 031823 18 AEADGILLGFPTR 30 (152)
Q Consensus 18 ~~aD~iIlgsP~y 30 (152)
.++||+|++|||=
T Consensus 284 vq~DGliVaTPTG 296 (409)
T KOG2178|consen 284 VQGDGLIVATPTG 296 (409)
T ss_pred EecceEEEecCCc
Confidence 4699999999993
No 138
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=24.94 E-value=1.1e+02 Score=21.75 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=28.0
Q ss_pred HHHHhhCCEEEEeccccC--CCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~--g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.++..++|+||+..-.-. ......+..|+.++. -++|+++.++++
T Consensus 59 ~~~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 105 (187)
T cd03137 59 LDALAAADTVIVPGGPDVDGRPPPPALLAALRRAA-------ARGARVASVCTG 105 (187)
T ss_pred ccccCCCCEEEECCCcccccccCCHHHHHHHHHHH-------hcCCEEEEECHH
Confidence 335668899998753211 344566777777653 257777777654
No 139
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=24.73 E-value=1.7e+02 Score=20.06 Aligned_cols=52 Identities=10% Similarity=-0.079 Sum_probs=29.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+-.......-...+..|.+.+..........++|..++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 3455679998888765544333445555554432111123457888888764
No 140
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=24.72 E-value=81 Score=20.26 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.0
Q ss_pred CCCCCHHHHhhCCEEEEeccc
Q 031823 9 VPTITPNELAEADGILLGFPT 29 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~ 29 (152)
.+.++.+++..||.||+..-+
T Consensus 28 ~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 28 ENELTAEDVASADMVILTKDI 48 (88)
T ss_pred CCCCCHHHHHhCCEEEEEecC
Confidence 345667999999999998766
No 141
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=24.59 E-value=1.8e+02 Score=20.81 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=27.8
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
+.||+||+.-|+ +-+|+.-+.+.+. ...+=|.+.++|+.+..
T Consensus 48 RhADiLlVTG~v-----T~~~~e~lkk~Ye----a~PePKiViA~GaCa~~ 89 (148)
T COG3260 48 RHADILLVTGAV-----TRQMREPLKKAYE----AMPEPKIVIAVGACALS 89 (148)
T ss_pred ccccEEEEeccc-----cHHHHHHHHHHHH----hCCCCcEEEEEcccccC
Confidence 457777776554 5666666666652 34477888888887653
No 142
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.57 E-value=42 Score=26.75 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=11.2
Q ss_pred hhCCEEEEecccc
Q 031823 18 AEADGILLGFPTR 30 (152)
Q Consensus 18 ~~aD~iIlgsP~y 30 (152)
..+||+|++|||=
T Consensus 174 ~~~DGlIvsTptG 186 (292)
T PRK03378 174 QRSDGLIISTPTG 186 (292)
T ss_pred EEccEEEEeCCCc
Confidence 4699999999983
No 143
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=24.42 E-value=2e+02 Score=21.49 Aligned_cols=42 Identities=14% Similarity=-0.022 Sum_probs=25.5
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
+.||.+|+.-|+ +-.|+..+.++.. ..-+=|.+.++|+....
T Consensus 80 RhADvllVtG~V-----T~~m~~~l~~~~e----~~p~pK~VIAvGsCA~~ 121 (182)
T PRK14816 80 RQADMIMVCGTI-----TNKMAPVLKRLYD----QMADPKYVIAVGGCAVS 121 (182)
T ss_pred CcceEEEEecCC-----cchhHHHHHHHHH----hcCCCCEEEEecccccc
Confidence 458888776555 4444444445442 23366888888887654
No 144
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.21 E-value=3.5e+02 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=19.8
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhc
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~ 46 (152)
+.+..+|.||++.|.+ .+..+++++.
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~ 98 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELA 98 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHH
Confidence 3467899999999965 5667777765
No 145
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=24.02 E-value=1.5e+02 Score=22.76 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=27.0
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
.+.||+++-.-.-.+.+.+....+++++.. +|+++.+++.
T Consensus 6 ~D~DGtl~~~~~~~~~~~~~a~~al~~l~~-------~G~~~~~~Tn 45 (257)
T TIGR01458 6 LDISGVLYISDAKSGVAVPGSQEAVKRLRG-------ASVKVRFVTN 45 (257)
T ss_pred EeCCCeEEeCCCcccCcCCCHHHHHHHHHH-------CCCeEEEEEC
Confidence 456888886543223366677888888763 6888887765
No 146
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=24.01 E-value=1.4e+02 Score=20.38 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=31.3
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+.++|++|+....-...-...++.|+..+.. ...+.++.++++-
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK 116 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRT-----ASKHMPGVLVGNK 116 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEEC
Confidence 456679999998776555445667778777653 1146788888774
No 147
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=23.43 E-value=82 Score=26.97 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=30.3
Q ss_pred CHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-ccCCCCCCeEEEEE
Q 031823 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-RSQQLAGKPAGIFY 63 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~-~~~~l~gK~~~~~~ 63 (152)
.++++.++|-|||.||. .++.|++++.... +.+.|. ..++++|
T Consensus 294 ~l~~l~~ydwlvFTS~n-------gV~~Ff~~l~~~~~D~R~l~-~kiaavG 337 (474)
T PRK07168 294 QINEIFNVNRLVFCSAE-------SVEILMQSCSKYKKDIRSLQ-AELQHMN 337 (474)
T ss_pred HHHHhccCCEEEEcCHH-------HHHHHHHHHHHcCCChHHhC-CEEEEEC
Confidence 37889999999999987 7799999987532 123454 4444544
No 148
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.42 E-value=1.2e+02 Score=22.63 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=13.9
Q ss_pred eEEEEEecCC--CCCCCcchHHHHHHHHHHcCcE
Q 031823 58 PAGIFYSTGS--QGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 58 ~~~~~~s~G~--~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
.++++|+-|- ..||-|...+++...+...|++
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~ 36 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGID 36 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCce
Confidence 3444554432 1244444444444444444443
No 149
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=23.37 E-value=1.4e+02 Score=23.64 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 031823 125 QPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 125 ~~~~e~~~~a~~lG~~la~~~ 145 (152)
.-.+|..+.++++|+++.+.+
T Consensus 99 ~tteecveiske~gkrvgeel 119 (302)
T COG3643 99 TTTEECVEISKELGKRVGEEL 119 (302)
T ss_pred ccHHHHHHHHHHHHHHhhHhh
Confidence 346888999999999998754
No 150
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=23.36 E-value=42 Score=29.06 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 378 ~rgDGLIVSTPT 389 (508)
T PLN02935 378 VQGDGLILSTTS 389 (508)
T ss_pred EECCcEEEecCc
Confidence 469999999998
No 151
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=23.32 E-value=2.1e+02 Score=19.92 Aligned_cols=47 Identities=4% Similarity=-0.065 Sum_probs=31.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
...+..+|++|+.--.....-...++.|+..+.. ...+.|+.++++=
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~piiiv~nK 113 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCGNIPIVLCGNK 113 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEc
Confidence 3456679999997766555545566778777753 2237888877763
No 152
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=23.08 E-value=1.9e+02 Score=24.56 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=23.6
Q ss_pred CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031823 52 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 52 ~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
..|+||++++++. .. . ...+...+..+||+++..+.
T Consensus 331 ~~L~GKrv~i~~g--~~--~----~~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 331 PRLEGKTVMLYVG--GL--R----PRHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HhcCCCEEEEECC--CC--c----HHHHHHHHHHCCCEEEEEee
Confidence 5889999988852 11 1 23344456789999986543
No 153
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=22.63 E-value=1.4e+02 Score=20.82 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=23.7
Q ss_pred hhCCEEEEec-cccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 18 AEADGILLGF-PTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 18 ~~aD~iIlgs-P~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.++|+|++.. |... ....+.+..|+.+... ++|+++.++++
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~-------~~~~i~~ic~G 103 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAE-------AGKPVAAICHG 103 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHH-------cCCeEEEEchH
Confidence 3689877765 3211 1234667777776642 66776666543
No 154
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=22.40 E-value=1.5e+02 Score=20.40 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=31.2
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+.-..-...-...++.|++.+.. ...++|+.++++-
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~nK 113 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVANK 113 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEC
Confidence 4457789999997766544444556777777642 2346788888874
No 155
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.40 E-value=2.5e+02 Score=23.83 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=40.5
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 19 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
....|-+-||-|-++...-....+..+...+....-....+-+++.+-+ .+ -+.++...|..+|++++
T Consensus 132 ~~~ii~v~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~--~~---D~~elk~lL~~~Gl~v~ 199 (461)
T TIGR02931 132 EVHLIPIHTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGWVN--PG---DVKELKHLLEEMDIEAN 199 (461)
T ss_pred CCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCC--hh---hHHHHHHHHHHcCCceE
Confidence 3568899999998888666666655554221111112233556654311 12 25667777788899876
No 156
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=22.28 E-value=2.1e+02 Score=25.05 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 031823 126 PSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 126 ~~~e~~~~a~~lG~~la~~~~~ 147 (152)
.+++.++.|++-|+++.+.+++
T Consensus 201 ~~~~r~~~a~~ag~~iv~l~~~ 222 (535)
T TIGR00110 201 TSAEKKRIAKNSGKRIVELVKK 222 (535)
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 5788899999999999998764
No 157
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=22.00 E-value=1.3e+02 Score=21.58 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.0
Q ss_pred hCCEEEEecccc--CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 19 EADGILLGFPTR--FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 19 ~aD~iIlgsP~y--~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
++|+||+....- .....+.++.|+.+... .+|+++.+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~-------~~k~i~~ic~ 116 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAE-------ANKPVAAICH 116 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHH-------cCCEEEEECc
Confidence 689887765321 11123567777777642 5677766654
No 158
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=21.92 E-value=3.4e+02 Score=20.36 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=19.0
Q ss_pred CCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 32 GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 32 g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..+.+..+.+++++.. +|++++++++.
T Consensus 23 ~~~~pga~e~L~~L~~-------~G~~~~ivTN~ 49 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIA-------QGKPVYFVSNS 49 (242)
T ss_pred CccCccHHHHHHHHHH-------CCCEEEEEeCC
Confidence 3456777888888753 67888888763
No 159
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=21.91 E-value=4.1e+02 Score=21.14 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=40.5
Q ss_pred CHHHHhh---CCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 13 TPNELAE---ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 13 ~~~~i~~---aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+++++.+ -|..|+..|- ..+...++.+.. +|=+.+++.|.|-. ......+.+.....||.
T Consensus 56 sv~dlp~~~~~DlAvi~vp~------~~v~~~l~e~~~-------~gvk~avI~s~Gf~----~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 56 TVAEAVEATGANASVIYVPP------PFAADAILEAID-------AGIDLIVCITEGIP----VLDMLEVKAYLERKKTR 118 (291)
T ss_pred CHHHHhhccCCCEEEEEcCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 3666666 4999999984 444455555532 44455555565431 11123677777889999
Q ss_pred EecCC
Q 031823 90 FVPIG 94 (152)
Q Consensus 90 ~v~~~ 94 (152)
++|++
T Consensus 119 vlGPN 123 (291)
T PRK05678 119 LIGPN 123 (291)
T ss_pred EECCC
Confidence 99965
No 160
>PLN02645 phosphoglycolate phosphatase
Probab=21.89 E-value=1.3e+02 Score=23.84 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=32.9
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 19 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
+.||+++-. ..+.+..+.+++++.. +|+++.++++-+. .....+.+.|..+|+.+
T Consensus 34 D~DGtl~~~----~~~~~ga~e~l~~lr~-------~g~~~~~~TN~~~------~~~~~~~~~l~~lGi~~ 88 (311)
T PLN02645 34 DCDGVIWKG----DKLIEGVPETLDMLRS-------MGKKLVFVTNNST------KSRAQYGKKFESLGLNV 88 (311)
T ss_pred eCcCCeEeC----CccCcCHHHHHHHHHH-------CCCEEEEEeCCCC------CCHHHHHHHHHHCCCCC
Confidence 344444432 3455666888888853 6888888775322 23455556666677654
No 161
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=21.60 E-value=2.3e+02 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 031823 126 PSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 126 ~~~e~~~~a~~lG~~la~~~~~ 147 (152)
.+++-.+.+++-|+++.+.+++
T Consensus 249 ~~~~r~~la~~ag~~iv~l~~~ 270 (601)
T TIGR01196 249 NTPLRDALTREAAKRLARMTGN 270 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 5677889999999999998865
No 162
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=21.51 E-value=1e+02 Score=19.72 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.6
Q ss_pred CCCCHHHHhhCCEEEEeccc
Q 031823 10 PTITPNELAEADGILLGFPT 29 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~ 29 (152)
+.++.+++.+||.||+..-+
T Consensus 43 ~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 43 NALTAEDIAAADGVILAADR 62 (85)
T ss_pred CCCCHHHHHhCCEEEEeccC
Confidence 44567999999999999766
No 163
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=21.22 E-value=2.5e+02 Score=20.97 Aligned_cols=43 Identities=12% Similarity=-0.067 Sum_probs=27.0
Q ss_pred HhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
=+.||.+++.-|+ +-.|+..+.++.. ...+-|.+.++|+....
T Consensus 71 PR~ADillVtG~V-----T~~m~~~l~r~ye----~~p~pK~VIAvGsCA~~ 113 (183)
T PRK14815 71 PRQADVMIVAGTV-----TYKMALAVRRIYD----QMPEPKWVIAMGACASS 113 (183)
T ss_pred CccccEEEEeCcC-----chhhHHHHHHHHH----hCCCCCEEEEecccccc
Confidence 3568888876554 5555555556542 23466888888887553
No 164
>PLN02929 NADH kinase
Probab=21.10 E-value=52 Score=26.50 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 194 ~~~DGliVsTpT 205 (301)
T PLN02929 194 VRSSGLRVSTAA 205 (301)
T ss_pred eecCcEEEeCCc
Confidence 478999999999
No 165
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=20.99 E-value=1.3e+02 Score=21.16 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=25.9
Q ss_pred HhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
+.+||++|+..-.-.-.-....+.++.++.. ...+.+.|+.++++=
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK 123 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLN---EDELRDAVILVFANK 123 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhh---CHhhcCCcEEEEEeC
Confidence 5789999996433222223334455554432 123467788888863
No 166
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=20.92 E-value=1.7e+02 Score=20.90 Aligned_cols=42 Identities=12% Similarity=-0.060 Sum_probs=24.4
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
+.||.+++.-|+-. .++..+.++.. ..-+-|.+.++|+....
T Consensus 56 r~aDvllVtG~vt~-----~~~~~l~~~~e----~~p~pk~VIA~GsCA~~ 97 (145)
T TIGR01957 56 RQADVMIVAGTVTK-----KMAPALRRLYD----QMPEPKWVISMGACANS 97 (145)
T ss_pred CcceEEEEecCCcH-----HHHHHHHHHHH----hccCCceEEEecceeec
Confidence 34888887666533 33444444432 22366788888887553
No 167
>KOG2448 consensus Dihydroxy-acid dehydratase [Amino acid transport and metabolism]
Probab=20.85 E-value=3.1e+02 Score=23.04 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 031823 126 PSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 126 ~~~e~~~~a~~lG~~la~~~~ 146 (152)
.+++.+.+|+..|+.+-++++
T Consensus 261 ~speklaec~~ag~yik~ll~ 281 (596)
T KOG2448|consen 261 ESPEKLAECRLAGKYIKELLK 281 (596)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 467899999999999987765
No 168
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.69 E-value=4.3e+02 Score=21.58 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHh---hCCEEEEeccccCC-CchH----HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHH
Q 031823 7 SDVPTITPNELA---EADGILLGFPTRFG-MMAA----QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLT 78 (152)
Q Consensus 7 ~~~~~~~~~~i~---~aD~iIlgsP~y~g-~~~~----~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~ 78 (152)
||+..+ ..++. ....|.+-||-|.+ +... .++.+++.+........-..+.+-+++...+. + -+.+
T Consensus 104 dDi~~v-~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~--~---d~~e 177 (406)
T cd01967 104 DDIEAV-AKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG--G---DAWV 177 (406)
T ss_pred cCHHHH-HHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc--h---hHHH
Confidence 444444 34443 37788889997766 5444 44555555542110012245567787765332 2 2566
Q ss_pred HHHHHHHcCcEEec
Q 031823 79 AITQLVHHGMIFVP 92 (152)
Q Consensus 79 ~~~~l~~~g~~~v~ 92 (152)
+...|..+|+++..
T Consensus 178 l~~lL~~~Gi~~~~ 191 (406)
T cd01967 178 IKPLLEELGIRVNA 191 (406)
T ss_pred HHHHHHHcCCEEEE
Confidence 77777788998764
No 169
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=20.65 E-value=2.8e+02 Score=20.68 Aligned_cols=42 Identities=17% Similarity=0.053 Sum_probs=26.6
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031823 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~ 68 (152)
+.||.+|+.-++-.. +...++...+.+ .+=|.+.++|+....
T Consensus 73 r~aDvllV~G~vt~~-~~~~l~~~~e~m--------p~pk~VIA~GaCA~~ 114 (183)
T PRK06411 73 RQADLMIVAGTLTNK-MAPALRRLYDQM--------PEPKWVISMGSCANS 114 (183)
T ss_pred CceeEEEEEeCCCcc-chHHHHHHHHHc--------CcCCeEEEEeccccc
Confidence 458888887776333 455555554443 356788888887553
No 170
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=20.54 E-value=4e+02 Score=20.45 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=39.8
Q ss_pred CEEEEeccccCCCch-HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 21 DGILLGFPTRFGMMA-AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 21 D~iIlgsP~y~g~~~-~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
..+++.+.++.++-. .-...++.++.. .+|.++++-+++.. +........+.+.+...|+++...
T Consensus 2 ~~ll~s~~~~~~~~~l~~~~~~~~~~~~-------~~~~v~fIPtAs~~-~~~~~y~~~~~~af~~lG~~v~~l 67 (233)
T PRK05282 2 ELLLLSNSTLPGTGYLEHALPLIAELLA-------GRRKAVFIPYAGVT-QSWDDYTAKVAEALAPLGIEVTGI 67 (233)
T ss_pred cEEEEecCCCCCCchHHHHHHHHHHHHc-------CCCeEEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEe
Confidence 357788888766433 455555555431 56677777665432 333344666788888899987643
No 171
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=20.53 E-value=3.2e+02 Score=21.81 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=38.1
Q ss_pred eccccCCC---chHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 26 GFPTRFGM---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 26 gsP~y~g~---~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..|+.|+. -.-+.+.+.|-+.-....+.++|+.++++|-. ....+...+...+..+|+++.
T Consensus 117 ~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~-----~~~~v~~Sl~~~~a~~g~~v~ 180 (301)
T TIGR00670 117 EVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDL-----KYGRTVHSLAEALTRFGVEVY 180 (301)
T ss_pred CCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccC-----CCCcHHHHHHHHHHHcCCEEE
Confidence 56888763 24566777775432111256899999887742 112457777777777888765
No 172
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=20.50 E-value=1.2e+02 Score=22.53 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCCCCeEEEEEecCCCCCCCcchHHHHHHHHH-HcCcEEe
Q 031823 53 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLV-HHGMIFV 91 (152)
Q Consensus 53 ~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~-~~g~~~v 91 (152)
.+-++.+++||++|. |...++..+.+.+. ..+..++
T Consensus 20 ~l~~~H~~I~G~TGs---GKS~~~~~ll~~l~~~~~~~~i 56 (229)
T PF01935_consen 20 KLFNRHIAIFGTTGS---GKSNTVKVLLEELLKKKGAKVI 56 (229)
T ss_pred HhccceEEEECCCCC---CHHHHHHHHHHHHHhcCCCCEE
Confidence 445689999999865 44456667777766 5544433
No 173
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=20.34 E-value=90 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhh
Q 031823 137 QGKYFAGITKKLK 149 (152)
Q Consensus 137 lG~~la~~~~~l~ 149 (152)
+|++||++++.|.
T Consensus 28 lGqkIa~l~kdw~ 40 (64)
T PF05596_consen 28 LGQKIAQLAKDWN 40 (64)
T ss_pred hHHHHHHHHHHHH
Confidence 6777777766654
No 174
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=20.33 E-value=5.2e+02 Score=21.71 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHhh---CCEEEEeccccCCCc-h----HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHH
Q 031823 7 SDVPTITPNELAE---ADGILLGFPTRFGMM-A----AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLT 78 (152)
Q Consensus 7 ~~~~~~~~~~i~~---aD~iIlgsP~y~g~~-~----~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~ 78 (152)
||+..+ .+++.+ ...|.+-||-|.+.. . ..++.+++.+........-..+.+-+++...+. + -+.+
T Consensus 135 dDi~~v-~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~-~----d~~e 208 (443)
T TIGR01862 135 DDIEAV-AKEVSKEIGKDVVAVNCPGFAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIG-G----DAWV 208 (443)
T ss_pred cCHHHH-HHHHHHhcCCCEEEEecCCccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCc-c----cHHH
Confidence 555555 444432 578888999987732 2 235555666543211111234567777755442 2 2456
Q ss_pred HHHHHHHcCcEEec
Q 031823 79 AITQLVHHGMIFVP 92 (152)
Q Consensus 79 ~~~~l~~~g~~~v~ 92 (152)
+...|..+|++++.
T Consensus 209 l~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 209 MRIYLEEMGIQVVA 222 (443)
T ss_pred HHHHHHHcCCeEEE
Confidence 77777888998863
No 175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=20.23 E-value=2.8e+02 Score=18.59 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=40.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..-+..+|++|+....-...-...+..|++.+... ...+.|..++++--..........+.........++.++.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e 141 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFE 141 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEE
Confidence 34566799999987765544445566677766431 1257888888874221111111223344444455666543
No 176
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=20.20 E-value=2.1e+02 Score=22.41 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=22.2
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhc
Q 031823 19 EADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~fld~l~ 46 (152)
.+|++++..|-|+..-...+..++..+.
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREII 126 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 3799999999998766677777777764
No 177
>PRK08250 glutamine amidotransferase; Provisional
Probab=20.14 E-value=1.4e+02 Score=22.74 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=11.3
Q ss_pred HHhhCCEEEE-ecccc
Q 031823 16 ELAEADGILL-GFPTR 30 (152)
Q Consensus 16 ~i~~aD~iIl-gsP~y 30 (152)
++.++|+||+ |+|..
T Consensus 42 ~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 42 NADGFDLLIVMGGPQS 57 (235)
T ss_pred CccccCEEEECCCCCC
Confidence 5668999776 88864
Done!