Query 031823
Match_columns 152
No_of_seqs 154 out of 1600
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 09:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7n_A Flavodoxin, WRBA-like p 99.9 3.3E-24 1.1E-28 158.8 8.9 144 8-151 43-190 (193)
2 3b6i_A Flavoprotein WRBA; flav 99.9 3.4E-23 1.2E-27 152.7 12.8 136 13-150 62-198 (198)
3 2a5l_A Trp repressor binding p 99.9 7.8E-23 2.7E-27 151.0 13.5 136 12-150 64-200 (200)
4 2zki_A 199AA long hypothetical 99.9 2.6E-22 8.9E-27 148.3 14.3 133 14-151 65-197 (199)
5 1ydg_A Trp repressor binding p 99.9 3.1E-22 1.1E-26 149.4 13.3 136 8-150 67-202 (211)
6 2ark_A Flavodoxin; FMN, struct 99.8 8.7E-20 3E-24 134.3 11.9 127 9-150 42-170 (188)
7 2q62_A ARSH; alpha/beta, flavo 99.7 6.5E-18 2.2E-22 129.8 9.8 120 14-150 93-213 (247)
8 2fzv_A Putative arsenical resi 99.7 1.4E-17 4.6E-22 130.0 9.6 120 14-150 118-238 (279)
9 3fni_A Putative diflavin flavo 99.7 2.4E-17 8.1E-22 118.7 9.4 99 14-147 51-149 (159)
10 1sqs_A Conserved hypothetical 99.7 1E-17 3.5E-22 127.7 7.4 112 7-147 68-179 (242)
11 3hly_A Flavodoxin-like domain; 99.7 4.8E-17 1.6E-21 117.1 10.3 100 14-148 46-145 (161)
12 4hs4_A Chromate reductase; tri 99.7 1.5E-16 5.1E-21 118.5 11.0 121 14-151 68-190 (199)
13 3fvw_A Putative NAD(P)H-depend 99.7 4.9E-17 1.7E-21 120.3 8.1 119 14-149 62-186 (192)
14 5nul_A Flavodoxin; electron tr 99.7 1.8E-16 6.1E-21 110.7 8.7 101 9-143 35-137 (138)
15 3gfs_A FMN-dependent NADPH-azo 99.7 3.7E-17 1.3E-21 118.7 5.4 112 14-147 58-169 (174)
16 3svl_A Protein YIEF; E. coli C 99.7 1.5E-16 5E-21 118.0 8.7 124 8-149 62-187 (193)
17 3u7r_A NADPH-dependent FMN red 99.7 1.2E-15 4.1E-20 112.9 13.6 119 14-148 62-181 (190)
18 1rtt_A Conserved hypothetical 99.7 1.8E-16 6E-21 116.8 8.6 118 14-148 67-185 (193)
19 3k1y_A Oxidoreductase; structu 99.7 6.1E-17 2.1E-21 120.0 6.1 116 7-149 74-190 (191)
20 1rli_A Trp repressor binding p 99.6 1.2E-17 4.1E-22 121.6 -0.4 116 7-143 60-183 (184)
21 2vzf_A NADH-dependent FMN redu 99.6 4.8E-16 1.6E-20 115.0 7.4 115 14-149 64-179 (197)
22 3s2y_A Chromate reductase; ura 99.4 6.9E-17 2.4E-21 120.3 0.0 127 7-151 62-190 (199)
23 2q9u_A A-type flavoprotein; fl 99.6 9.8E-15 3.3E-19 118.4 11.9 104 14-150 302-408 (414)
24 2fz5_A Flavodoxin; alpha/beta 99.6 4.6E-15 1.6E-19 102.8 8.4 99 9-143 36-136 (137)
25 4dik_A Flavoprotein; TM0755, e 99.6 3.9E-15 1.3E-19 121.7 7.6 102 6-141 307-408 (410)
26 2hpv_A FMN-dependent NADH-azor 99.6 2.5E-14 8.7E-19 106.1 10.4 109 14-143 89-206 (208)
27 2ohh_A Type A flavoprotein FPR 99.6 1.4E-14 4.7E-19 116.8 9.4 102 14-146 302-403 (404)
28 1t0i_A YLR011WP; FMN binding p 99.5 3.6E-15 1.2E-19 109.3 5.3 71 14-92 79-149 (191)
29 1t5b_A Acyl carrier protein ph 99.5 5.1E-14 1.7E-18 103.4 9.2 79 14-92 81-170 (201)
30 3f6r_A Flavodoxin; FMN binding 99.5 3.9E-14 1.3E-18 99.8 8.2 102 13-144 42-147 (148)
31 1ycg_A Nitric oxide reductase; 99.5 2.4E-13 8.3E-18 109.3 9.8 100 14-146 297-397 (398)
32 1e5d_A Rubredoxin\:oxygen oxid 99.5 6.4E-13 2.2E-17 107.0 12.2 102 14-148 298-399 (402)
33 3r6w_A FMN-dependent NADH-azor 99.5 1.1E-12 3.7E-17 97.8 12.3 79 14-92 82-180 (212)
34 3f2v_A General stress protein 99.4 9E-13 3.1E-17 97.6 11.2 88 5-93 45-147 (192)
35 1f4p_A Flavodoxin; electron tr 99.4 1.6E-13 5.6E-18 96.4 6.6 100 14-143 42-145 (147)
36 3p0r_A Azoreductase; structura 99.4 1.2E-12 4.2E-17 97.9 10.1 79 14-92 87-179 (211)
37 3u7i_A FMN-dependent NADH-azor 99.4 3.4E-12 1.2E-16 96.4 11.1 79 14-92 89-183 (223)
38 3lcm_A SMU.1420, putative oxid 99.4 1.8E-12 6.2E-17 95.9 8.3 85 7-92 62-159 (196)
39 1czn_A Flavodoxin; FMN binding 99.4 5.1E-12 1.8E-16 90.7 10.0 124 13-144 40-166 (169)
40 3l9w_A Glutathione-regulated p 99.3 5.8E-12 2E-16 103.0 11.1 119 5-147 279-410 (413)
41 2amj_A Modulator of drug activ 99.3 1.1E-12 3.7E-17 97.7 6.2 85 7-92 59-175 (204)
42 3ha2_A NADPH-quinone reductase 99.3 2.8E-12 9.4E-17 93.8 7.5 86 6-92 39-138 (177)
43 1obo_A Flavodoxin; electron tr 99.3 1.7E-11 6E-16 87.9 11.1 127 11-145 38-167 (169)
44 1d4a_A DT-diaphorase, quinone 99.3 5.2E-12 1.8E-16 98.0 6.6 55 14-68 88-151 (273)
45 1yob_A Flavodoxin 2, flavodoxi 99.3 5.5E-11 1.9E-15 86.4 11.3 125 11-143 38-173 (179)
46 1ag9_A Flavodoxin; electron tr 99.3 8.1E-11 2.8E-15 85.2 11.5 126 12-146 38-168 (175)
47 3tem_A Ribosyldihydronicotinam 99.2 1.8E-11 6.3E-16 92.6 8.0 55 14-68 87-150 (228)
48 2fcr_A Flavodoxin; electron tr 99.2 1.1E-10 3.9E-15 84.3 10.7 124 13-144 39-170 (173)
49 2wc1_A Flavodoxin; electron tr 99.2 1.1E-10 3.7E-15 85.0 9.4 127 11-145 39-176 (182)
50 3rpe_A MDAB, modulator of drug 99.2 2.4E-11 8.3E-16 91.5 5.6 85 7-92 72-188 (218)
51 1ykg_A SIR-FP, sulfite reducta 99.2 9.1E-11 3.1E-15 84.4 7.5 107 11-147 48-155 (167)
52 3klb_A Putative flavoprotein; 99.1 1.6E-10 5.4E-15 82.9 6.7 67 14-91 73-139 (162)
53 4ici_A Putative flavoprotein; 99.0 5.2E-10 1.8E-14 81.0 7.6 67 14-91 82-148 (171)
54 4gi5_A Quinone reductase; prot 99.0 4.6E-10 1.6E-14 87.5 7.3 55 14-68 107-178 (280)
55 3edo_A Flavoprotein, putative 99.0 7.5E-11 2.6E-15 83.6 2.2 68 14-92 71-138 (151)
56 2hna_A Protein MIOC, flavodoxi 99.0 3.3E-11 1.1E-15 84.8 -1.6 101 14-145 41-146 (147)
57 2bmv_A Flavodoxin; electron tr 98.9 1.7E-09 5.8E-14 77.2 6.3 123 11-143 36-161 (164)
58 1bvy_F Protein (cytochrome P45 98.9 1.3E-09 4.4E-14 80.4 3.8 102 16-146 64-167 (191)
59 2xod_A NRDI protein, NRDI; fla 98.6 1.4E-07 4.9E-12 63.9 6.7 84 19-142 32-117 (119)
60 3hr4_A Nitric oxide synthase, 98.3 1.1E-06 3.8E-11 66.0 6.5 82 10-93 77-159 (219)
61 2bpo_A CPR, P450R, NADPH-cytoc 98.3 2.6E-06 9E-11 73.5 9.2 112 9-147 87-200 (682)
62 3qe2_A CPR, P450R, NADPH--cyto 97.6 9.1E-05 3.1E-09 63.3 6.4 72 19-92 70-142 (618)
63 1tll_A Nitric-oxide synthase, 97.5 0.00031 1.1E-08 60.7 8.7 84 10-93 48-172 (688)
64 1rlj_A NRDI protein; flavoprot 97.1 0.0017 5.8E-08 45.1 7.2 87 17-143 41-129 (139)
65 3n3a_C Protein NRDI; ribonucle 96.6 0.0017 6E-08 45.9 3.8 89 17-143 56-150 (153)
66 2m1z_A LMO0427 protein; homolo 53.2 10 0.00034 24.8 2.7 38 10-64 48-85 (106)
67 3efe_A THIJ/PFPI family protei 52.1 7.8 0.00027 27.8 2.3 45 14-65 67-114 (212)
68 3mw8_A Uroporphyrinogen-III sy 50.3 8 0.00027 28.1 2.1 38 14-63 45-82 (240)
69 2kyr_A Fructose-like phosphotr 46.6 15 0.0005 24.2 2.7 38 10-64 51-88 (111)
70 2r48_A Phosphotransferase syst 44.4 17 0.00057 23.7 2.7 37 10-64 48-84 (106)
71 2r4q_A Phosphotransferase syst 41.8 16 0.00056 23.7 2.3 37 10-64 48-84 (106)
72 4es6_A Uroporphyrinogen-III sy 41.0 16 0.00055 26.7 2.5 41 14-63 53-93 (254)
73 3re1_A Uroporphyrinogen-III sy 39.9 16 0.00055 27.1 2.4 26 15-47 62-87 (269)
74 2yv2_A Succinyl-COA synthetase 38.5 92 0.0031 23.5 6.5 64 14-94 62-129 (297)
75 2yv1_A Succinyl-COA ligase [AD 38.0 1.2E+02 0.004 22.9 7.1 64 14-94 62-128 (294)
76 2nu8_A Succinyl-COA ligase [AD 36.7 1.3E+02 0.0045 22.5 7.5 64 14-94 56-122 (288)
77 1f35_A Olfactory marker protei 34.9 27 0.00093 23.8 2.6 18 131-148 118-135 (162)
78 3pfn_A NAD kinase; structural 34.8 15 0.0005 29.2 1.5 12 18-29 245-256 (365)
79 2yfk_A Aspartate/ornithine car 34.8 1.8E+02 0.0061 23.4 8.7 38 54-91 186-223 (418)
80 3cpt_A Mitogen-activated prote 34.2 23 0.0008 24.3 2.2 19 29-47 15-33 (143)
81 1oth_A Protein (ornithine tran 32.5 94 0.0032 24.0 5.7 65 20-91 102-183 (321)
82 3er6_A Putative transcriptiona 32.5 18 0.0006 25.9 1.5 45 13-64 68-116 (209)
83 3qha_A Putative oxidoreductase 32.1 1.5E+02 0.0052 21.8 7.3 65 14-94 65-130 (296)
84 3f5d_A Protein YDEA; unknow pr 30.4 22 0.00075 25.4 1.7 38 19-64 63-101 (206)
85 3oet_A Erythronate-4-phosphate 30.0 96 0.0033 24.6 5.5 69 11-92 74-147 (381)
86 2b6h_A ADP-ribosylation factor 29.5 1.3E+02 0.0043 20.3 5.6 49 14-65 91-139 (192)
87 1z0s_A Probable inorganic poly 29.2 17 0.00057 27.7 0.9 12 18-29 171-182 (278)
88 3k96_A Glycerol-3-phosphate de 28.8 1.7E+02 0.0058 22.6 6.7 27 15-47 95-121 (356)
89 3p9z_A Uroporphyrinogen III co 27.3 9.6 0.00033 27.7 -0.7 42 15-63 33-74 (229)
90 4hcj_A THIJ/PFPI domain protei 26.7 38 0.0013 23.6 2.4 41 17-64 67-109 (177)
91 1oi7_A Succinyl-COA synthetase 26.7 2E+02 0.0069 21.5 6.8 64 14-94 56-122 (288)
92 1ml4_A Aspartate transcarbamoy 26.6 60 0.0021 25.0 3.7 61 26-91 122-185 (308)
93 4e15_A Kynurenine formamidase; 26.1 1.8E+02 0.0063 20.8 7.0 42 55-96 80-121 (303)
94 3gra_A Transcriptional regulat 24.8 35 0.0012 24.1 1.9 40 17-64 69-109 (202)
95 3tw8_B RAS-related protein RAB 24.6 1.5E+02 0.005 19.2 5.9 77 10-91 72-148 (181)
96 3pdi_A Nitrogenase MOFE cofact 24.1 1.7E+02 0.0058 23.7 6.1 36 52-95 328-363 (483)
97 2x77_A ADP-ribosylation factor 23.9 1.6E+02 0.0055 19.4 6.0 49 14-65 84-132 (189)
98 1upt_A ARL1, ADP-ribosylation 23.6 1.5E+02 0.0051 18.9 5.0 48 15-65 70-117 (171)
99 3afo_A NADH kinase POS5; alpha 23.5 21 0.00073 28.4 0.6 12 18-29 227-238 (388)
100 1r8s_A ADP-ribosylation factor 23.4 1.4E+02 0.0048 19.0 4.8 47 16-65 64-110 (164)
101 3bk2_A RNAse J, metal dependen 22.8 2.1E+02 0.0072 23.5 6.6 69 19-93 305-373 (562)
102 2f7s_A C25KG, RAS-related prot 22.7 1.8E+02 0.0063 19.7 6.8 74 15-91 103-176 (217)
103 3dcm_X AdoMet, uncharacterized 22.7 58 0.002 23.4 2.7 37 11-47 145-185 (192)
104 3cne_A Putative protease I; st 22.1 67 0.0023 21.7 2.9 40 18-64 65-112 (175)
105 4huj_A Uncharacterized protein 22.0 76 0.0026 22.4 3.3 26 14-45 76-101 (220)
106 3l21_A DHDPS, dihydrodipicolin 21.9 1.5E+02 0.0052 22.4 5.2 28 19-46 110-137 (304)
107 2b0j_A 5,10-methenyltetrahydro 21.7 2.9E+02 0.0099 21.5 7.1 31 14-46 136-167 (358)
108 3dz8_A RAS-related protein RAB 21.6 1.8E+02 0.0063 19.2 5.6 74 15-92 91-164 (191)
109 1zd9_A ADP-ribosylation factor 21.6 1.6E+02 0.0056 19.5 4.9 48 15-65 86-133 (188)
110 3l0i_B RAS-related protein RAB 21.5 1.3E+02 0.0045 20.2 4.5 51 10-64 96-146 (199)
111 2q7x_A UPF0052 protein SP_1565 21.4 54 0.0018 25.5 2.5 28 10-38 176-203 (326)
112 1ky3_A GTP-binding protein YPT 21.2 68 0.0023 20.9 2.8 51 15-65 77-127 (182)
113 4adb_A Succinylornithine trans 21.2 2.6E+02 0.009 20.9 6.8 68 21-93 129-223 (406)
114 1x3s_A RAS-related protein RAB 21.1 1.4E+02 0.0046 19.7 4.4 74 14-91 82-155 (195)
115 3bc1_A RAS-related protein RAB 21.1 1.7E+02 0.0058 19.1 4.9 73 16-91 90-162 (195)
116 1f6b_A SAR1; gtpases, N-termin 20.6 1.7E+02 0.006 19.7 5.0 49 14-65 87-135 (198)
117 1ko7_A HPR kinase/phosphatase; 20.6 1.5E+02 0.005 22.8 4.8 79 9-94 92-175 (314)
118 2fg5_A RAB-22B, RAS-related pr 20.5 2E+02 0.0067 19.1 6.3 74 14-91 90-163 (192)
119 4fs3_A Enoyl-[acyl-carrier-pro 20.5 1.5E+02 0.005 21.4 4.7 35 53-92 3-37 (256)
120 2h17_A ADP-ribosylation factor 20.4 1.9E+02 0.0065 18.9 5.4 49 14-65 83-131 (181)
121 3kkl_A Probable chaperone prot 20.3 42 0.0014 24.7 1.6 40 18-64 97-139 (244)
122 1z0f_A RAB14, member RAS oncog 20.1 1.8E+02 0.0063 18.6 5.9 75 14-92 82-156 (179)
123 1moz_A ARL1, ADP-ribosylation 20.0 1.9E+02 0.0065 18.8 5.5 49 14-65 80-128 (183)
No 1
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.90 E-value=3.3e-24 Score=158.77 Aligned_cols=144 Identities=24% Similarity=0.261 Sum_probs=105.4
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
|+++...+++.+||+||||||+|++++++++|.|+|++..+|....++||++++|+++|+..|+.+.++..+...+..+|
T Consensus 43 ~~~~~~~~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G 122 (193)
T 3d7n_A 43 NLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHG 122 (193)
T ss_dssp CCCHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHhHHHHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCC
Confidence 45553368999999999999999999999999999999766655678999999999998866666788999999999999
Q ss_pred cEEecCCCcCCCCC--ccccccccCCCCCCceecC-CCC-CCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031823 88 MIFVPIGYTFGAGM--SEMEKVKGGSPYGAGTFAG-DGS-RQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 88 ~~~v~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~-d~~-~~~~~e~~~~a~~lG~~la~~~~~l~~~ 151 (152)
|.+++..+..++.. ........|+++|+.++.+ |+. ..|++++++.|+++|++|++.+++|++.
T Consensus 123 ~~~vg~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~~ 190 (193)
T 3d7n_A 123 GLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKST 190 (193)
T ss_dssp CEECCCC-------------------CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CEEeCCccCcccccccccccCCCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998766532210 0001123466688766653 321 2379999999999999999999998753
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.90 E-value=3.4e-23 Score=152.74 Aligned_cols=136 Identities=56% Similarity=0.930 Sum_probs=109.2
Q ss_pred CHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..+++.+||+||||||+|++++++++|+|+|++..+|....++||++++|+++||. |+.+.++..+...+..+||.+++
T Consensus 62 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp CGGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hHHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 47899999999999999999999999999999976654457899999999999986 66677888899999999999998
Q ss_pred CCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
.++.... ......++++.+||...+.+ ++...|+++++++|+++|+++++.+++|++
T Consensus 141 ~~~~~~~-~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 141 IGYAAQE-LFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CTTCSGG-GGCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccc-ccccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7654200 00001235567788776654 444578999999999999999999998863
No 3
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.90 E-value=7.8e-23 Score=151.00 Aligned_cols=136 Identities=47% Similarity=0.719 Sum_probs=104.6
Q ss_pred CCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 12 ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
...+++.+||+||||||+|++++++++|+|||++..+|....++||++++|+++||..++...++..+...+..+||.++
T Consensus 64 ~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 64 ATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp CCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred hhHHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34889999999999999999999999999999997665445789999999999998656655678889999999999999
Q ss_pred cCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 92 PIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
+..+..... ...+..+.+++...+.+ ++...|+++++++|+++|+++++.+++|++
T Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 144 GIPYSEPAL---LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp CCCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCccc---cccccCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 865431000 11123355666655543 334578999999999999999999998864
No 4
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.6e-22 Score=148.35 Aligned_cols=133 Identities=40% Similarity=0.639 Sum_probs=105.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+||||||+|++++++++|+|||++..+|....++||++++|+++||..|+.+.++..+...+..+||.+++.
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 78999999999999999999999999999999766655679999999999999876666677888999999999999987
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~~~ 151 (152)
.+..+.. ......+.+|+...+.+. ..|+++++++|+++|+++++.+++|++.
T Consensus 145 ~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~~ 197 (199)
T 2zki_A 145 GYGIPEL---FQTTTGGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKCC 197 (199)
T ss_dssp TTCSTHH---HHCSSSCCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCccc---cccccCCCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6542100 000133456666544311 1689999999999999999999998764
No 5
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.88 E-value=3.1e-22 Score=149.41 Aligned_cols=136 Identities=39% Similarity=0.551 Sum_probs=107.5
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
|++....+++.+||+||||||+|++++++++|+|||++..+|....++||++++|+++|+..++.+.++..+...+..+|
T Consensus 67 d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g 146 (211)
T 1ydg_A 67 DVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWG 146 (211)
T ss_dssp TSCBCCHHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCC
Confidence 43233489999999999999999999999999999999766655678999999999999876666678889999999999
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
|.+++.++.... -..+.+++||...+.+. ..|+++++++|+++|++|++.+++|++
T Consensus 147 ~~~v~~~~~~~~-----~~~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~~ 202 (211)
T 1ydg_A 147 AVLTPPGYTDEV-----IFKSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLLE 202 (211)
T ss_dssp CEECCCTTCSHH-----HHHTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeCCCCCChh-----hccCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999987543100 00133556776544311 358999999999999999999999875
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.82 E-value=8.7e-20 Score=134.25 Aligned_cols=127 Identities=30% Similarity=0.462 Sum_probs=97.3
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcC-ccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 9 VPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG-LWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~-~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
+.+...+++.+||+||||||+|++++++.+|.|+|++.. .| ..++||++++|+++|++.|+...++..+...+..+|
T Consensus 42 l~~~~~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g 119 (188)
T 2ark_A 42 VDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFG 119 (188)
T ss_dssp TTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTT
T ss_pred hhhCCHHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Confidence 344457899999999999999999999999999999864 22 468999999999987666666667888888888899
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhc
Q 031823 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~-~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
|.+++.+...+. .....+|.... ..|+ ++++++|+++|++|++.+++++.
T Consensus 120 ~~~~~~~~~~~~--------~~~~~~g~~~~-----~~p~~~~~~~~~~~~g~~la~~~~~~~~ 170 (188)
T 2ark_A 120 FLVFGVTDYVGK--------KFTLHYGAVVA-----GEPRSEEEKEACRRLGRRLAEWVAIFVD 170 (188)
T ss_dssp CEECCEEEEEET--------TEEESSSEEEE-----SSCCSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cEEeCCCccccc--------cccCCCcceee-----cCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999864321110 00112333222 3577 99999999999999999998864
No 7
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.74 E-value=6.5e-18 Score=129.80 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=92.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~-~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.++|.+||+|||+||+||+++++++|+|||++...+. ...++||++++++++|+. |+ ..+...+...+..+||.+++
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg-~~a~~~Lr~~l~~lg~~~v~ 170 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QS-FNAVNQMRILGRWMRMITIP 170 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cH-HHHHHHHHHHHHHCCCEEeC
Confidence 7899999999999999999999999999999986543 246899999999998874 43 35678888888889999986
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
..+..+ ..+. .+..++. ..+++.+++++.+++++++.+++++.
T Consensus 171 ~~v~i~------------~~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 213 (247)
T 2q62_A 171 NQSSVA------------KAFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRD 213 (247)
T ss_dssp CCEEES------------SGGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEe------------cchh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543321 1110 1211222 34678889999999999999988764
No 8
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.73 E-value=1.4e-17 Score=130.00 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=92.3
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~-~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.++|.+||+|||+||+||+++++++|+|||++...+. ...++||++++++++|+. |+ ..++..+...+..+||.+++
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg-~~a~~~Lr~~l~~lg~~vv~ 195 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QS-FNAVNTLRLLGRWMRMFTIP 195 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cH-HHHHHHHHHHHHhcCcEEeC
Confidence 7899999999999999999999999999999986543 246899999999998874 43 35678888888889999986
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
..+.+. ..+. .++.++ ...+++.+++++.+++++++.+++++.
T Consensus 196 ~~v~v~------------~~~~--~fd~~G-~l~d~~~~~~l~~~~~~l~~~~~~l~~ 238 (279)
T 2fzv_A 196 NQSSIA------------KAFQ--EFDAAG-RMKPSPYYDRIADVMEELVRFTALVRP 238 (279)
T ss_dssp CCEEET------------TGGG--TBCTTS-CBCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEe------------cccc--ccCCCC-CcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544321 0000 121122 234677889999999999999988874
No 9
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.72 E-value=2.4e-17 Score=118.70 Aligned_cols=99 Identities=12% Similarity=0.195 Sum_probs=80.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||||++.++ ++.|++++.. ..++||++++|+++||. ++ ++..+.+.|...|+.+++.
T Consensus 51 ~~~~~~~d~ii~Gspty~g~~p--~~~~l~~l~~----~~~~~k~va~fgs~g~~-~~---a~~~l~~~l~~~G~~~v~~ 120 (159)
T 3fni_A 51 RELVGRCTGLVIGMSPAASAAS--IQGALSTILG----SVNEKQAVGIFETGGGD-DE---PIDPLLSKFRNLGLTTAFP 120 (159)
T ss_dssp HHHHHTEEEEEEECCBTTSHHH--HHHHHHHHHH----HCCTTSEEEEECCSSSC-BC---CHHHHHHHHHHTTCEESSS
T ss_pred HHHHHhCCEEEEEcCcCCCCcc--HHHHHHHHHh----hcccCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecC
Confidence 4567789999999999998865 5999999863 35799999999999874 32 4677888888899999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
++.. ...|+++++++|+++|++|++.+++
T Consensus 121 ~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 121 AIRI-------------------------KQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp CBCC-------------------------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEE-------------------------EeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1569999999999999999987654
No 10
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.72 E-value=1e-17 Score=127.66 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=88.3
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+++.++ .++|.+||+|||+||+||+++|+.||+||||+...+....++||++++|+++|+. |...++..+...+..+
T Consensus 68 ~~~~~~-~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~ 144 (242)
T 1sqs_A 68 DDGGVI-KKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYM 144 (242)
T ss_dssp STHHHH-HHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHC
Confidence 555555 7899999999999999999999999999999965433347899999999998774 3446778888888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
|+.+++. +.. . ..++++.+++++++|+++++.++.
T Consensus 145 G~~~v~~-~~~--------------------~-----~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 145 GGQILHQ-VSI--------------------T-----NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp TCEEEEE-EEE--------------------E-----GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeeE-EEE--------------------e-----ccCChHHHHHHHHHHHHHHHHHhc
Confidence 9999864 210 1 112346889999999999987654
No 11
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.71 E-value=4.8e-17 Score=117.14 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=80.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||||++.++ . +.|++++.. ..++||++++|+++||. | .++..+.+.|...|+.+++.
T Consensus 46 ~~~~~~~d~ii~Gspty~g~~p-~-~~fl~~l~~----~~l~gk~v~~fgs~g~~-g---~a~~~l~~~l~~~G~~~v~~ 115 (161)
T 3hly_A 46 IEAVSSARGIVLGTPPSQPSEA-V-ATALSTIFA----AAHNKQAIGLFDSYGGD-D---EPIDALLAQFRNLGLHTAFP 115 (161)
T ss_dssp HHHHHHCSEEEEECCBSSCCHH-H-HHHHHHHHH----HCCTTSEEEEECCCCSS-B---CCHHHHHHHHHHTTCEESSS
T ss_pred HHHHHhCCEEEEEcCCcCCchh-H-HHHHHHHHh----hhhCCCEEEEEEcCCCC-c---HHHHHHHHHHHHCCCEEecC
Confidence 4556789999999999987755 4 999999863 35899999999999884 3 34777888888899999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l 148 (152)
++.. ...|+++++++|+++|++|++.++.-
T Consensus 116 ~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~l~~~ 145 (161)
T 3hly_A 116 PIRV-------------------------KDQPTEAIYQQCEESGTDLGQWLTRA 145 (161)
T ss_dssp CBCC-------------------------CSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5431 15699999999999999999877653
No 12
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.69 E-value=1.5e-16 Score=118.49 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=91.2
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.++|.+||+|||+||+||+++|+.+|+|||++.. +....|+||++++++++|+..|+ ..+...+...|..+|+.+++.
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~il~~lg~~~v~~ 145 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGG-ARAQNHLRQSLVFLDAYVLNR 145 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCS-HHHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCccc-HHHHHHHHHHHHHcCCEEcCC
Confidence 7889999999999999999999999999999975 22357899999999998655444 356777888888899999974
Q ss_pred -CCcCCCCCccccccccCCCCCCceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031823 94 -GYTFGAGMSEMEKVKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~~~~~~e~~~~a~~lG~~la~~~~~l~~~ 151 (152)
.+.++. .. ..++.+ +. ..+++..++++.+.+++++.+++++..
T Consensus 146 ~~v~i~~------------~~--~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~~~ 190 (199)
T 4hs4_A 146 PEAMIGQ------------VT--GKVDAQTLE-LSDVATREFLARQLDALAALARTLSPR 190 (199)
T ss_dssp SCEEECS------------GG--GTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEeec------------hh--hhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 232210 00 112221 32 347888999999999999999887654
No 13
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.69 E-value=4.9e-17 Score=120.26 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=87.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc------cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR------SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~------~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
.++|.+||+|||+||+||+++|+.+|+|||++..... ...++||++++++++|+. | ...++..+...+..+|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999986421 246899999999998773 3 3445677888888899
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031823 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~ 149 (152)
|.+++....... ....++ ++...++++..++++.+.+++.+.++.|+
T Consensus 140 ~~~v~~~v~~~~--------------~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (192)
T 3fvw_A 140 MHLVDQLTGVPI--------------NSEAWS-TGILKVSAEKLAELSAQADALLSAIENLE 186 (192)
T ss_dssp CEECCCCEEECC--------------CTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred Ceeecceeeccc--------------chhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999975332210 011121 23334689999999999999888776654
No 14
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.67 E-value=1.8e-16 Score=110.70 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=82.7
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCCchH--HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEADGILLGFPTRFGMMAA--QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~--~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+...+++.++|.||||+|||++++++ .++.|++++.. .++||++++|+++||.. ..++..+.+.|..+
T Consensus 35 ~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~ 106 (138)
T 5nul_A 35 VSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST-----KISGKKVALFGSYGWGD---GKWMRDFEERMNGY 106 (138)
T ss_dssp GGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSC---SHHHHHHHHHHHHT
T ss_pred hhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCC---ChHHHHHHHHHHHC
Confidence 3444567899999999999999999765 69999999863 28999999999998852 24678888888999
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
|+.+++.++.. + ..|++++ ++|+++|++|++
T Consensus 107 G~~~v~~~~~~----------~---------------~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 107 GCVVVETPLIV----------Q---------------NEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp TCEECSCCEEE----------E---------------SSCGGGH-HHHHHHHHHHHT
T ss_pred CCEEECCceEE----------e---------------cCCCHHH-HHHHHHHHHHhc
Confidence 99999755431 1 4688999 999999999975
No 15
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.67 E-value=3.7e-17 Score=118.67 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=86.2
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+|||+||+||+++++.+|+|||++.. ..++||++++|+++|++.| ...++..+...+..+|+.+++.
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v~~ 132 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVIPK 132 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEecc
Confidence 5799999999999999999999999999999863 4689999999997655433 3456778888888899999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
++.+.. ..++. ....++++..++++++.+.+++.++.
T Consensus 133 ~v~i~~----------------~~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~ 169 (174)
T 3gfs_A 133 QLVLKP----------------VHIDV-ENATVAENIKESIKELVEELSMFAKA 169 (174)
T ss_dssp EEEECG----------------GGEET-TTTEECHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEech----------------hhcCC-CCCccCHHHHHHHHHHHHHHHHHHHc
Confidence 443210 01211 12457788999999999999887663
No 16
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.67 E-value=1.5e-16 Score=117.99 Aligned_cols=124 Identities=21% Similarity=0.210 Sum_probs=89.7
Q ss_pred CCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031823 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 ~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g 87 (152)
++.++ .++|.+||+|||+||+||+++++.+|+|||++... ....++||++++++++|++.|+ ..+...++..|..+|
T Consensus 62 ~~~~l-~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg 138 (193)
T 3svl_A 62 TVEAL-AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLD 138 (193)
T ss_dssp HHHHH-HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCC
Confidence 33444 78999999999999999999999999999999752 2357899999999986554444 356778888888899
Q ss_pred cEEecCC-CcCCCCCccccccccCCCCCCceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031823 88 MIFVPIG-YTFGAGMSEMEKVKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 88 ~~~v~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~~~~~~e~~~~a~~lG~~la~~~~~l~ 149 (152)
+.+++.+ +.+. .. ...+..+ +. ..|++..++++.+.++++..+++++
T Consensus 139 ~~v~~~~~~~~~------------~~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 139 AMVMNKPEFMGG------------VI--QNKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp CEECCSSCEEET------------TG--GGGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred CEEcCCCeEeec------------ch--hhhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998643 2110 00 0123222 32 4578899999999999998777654
No 17
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.67 E-value=1.2e-15 Score=112.94 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=89.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.++|.+||++||+||+||+++|+.+|++||.+.+.+....|.|||+++++++++..|+ ..+...++..|..+|+.+++.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg-~~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGA-ALAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTT-HHHHHHHHHHHHTTTCEECCC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhH-HHHHHHHHHHHHHcCCEEccC
Confidence 5789999999999999999999999999999976555568999999999987654444 456777888888899998864
Q ss_pred C-CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031823 94 G-YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l 148 (152)
+ +.+.. ....++.|+. ..|++..+.++.+.+++++.+++.
T Consensus 141 p~~~i~~--------------~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 141 PEAYIQW--------------HAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp SCCEEEC--------------CGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEec--------------cHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3 21100 0112322332 457888889999999999888763
No 18
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.67 E-value=1.8e-16 Score=116.76 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=84.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+|||+||+||+++++.+|+|||++...+. ..++||++++|+++|++.|+ ..+...+...+...|+.+++.
T Consensus 67 ~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~ 144 (193)
T 1rtt_A 67 REQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNK 144 (193)
T ss_dssp HHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCS
T ss_pred HHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCC
Confidence 6799999999999999999999999999999975432 46899999999998654443 356777888888899999874
Q ss_pred -CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031823 94 -GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l 148 (152)
.+.+.. .. ..++.++ ...+++..++++++++++.+.+++.
T Consensus 145 ~~~~~~~------------~~--~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~ 185 (193)
T 1rtt_A 145 PEVMISS------------AQ--NAFDAQG-RLLDDKARELIQQQLQALQLWVREG 185 (193)
T ss_dssp SCEEECS------------GG--GTBCSTT-CBCCHHHHHHHHHHHHHHHC-----
T ss_pred CeEEecc------------hH--hhcCcCC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 332210 00 0111122 2357888999999999998777654
No 19
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.67 E-value=6.1e-17 Score=120.01 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHH-HHHHHHH
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLT-AITQLVH 85 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~-~~~~l~~ 85 (152)
+++.++ .++|.+||+|||+||+||++++++||+|||++.. ..++||++++++++|+. ++. ..++. +...|..
T Consensus 74 ~~~~~~-~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~-~~~-~~~~~~L~~il~~ 146 (191)
T 3k1y_A 74 TKLEEI-TSALSASDGLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSA-RHS-LVLDYALRPLLSY 146 (191)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSS-TTT-THHHHTHHHHHHH
T ss_pred HHHHHH-HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCc-chh-hHHHHHHHHHHHH
Confidence 444455 8899999999999999999999999999999974 57899999999998764 333 23344 6667778
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031823 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~ 149 (152)
+|+.+++..+.+. ...++. . -+++..++++++.++++..+++.+
T Consensus 147 lg~~vv~~~v~~~----------------~~~f~~---~-~~~~~~~rl~~~~~~~~~~~~~~~ 190 (191)
T 3k1y_A 147 MRAVVVPTGVFAA----------------TEDFGG---P-EGAEFNKRIARAAGELASLIVEES 190 (191)
T ss_dssp TTCEECSCCEEEE----------------GGGCSH---H-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEcCcEEEec----------------hhhcCC---C-CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987643320 001110 0 135667788888888888777544
No 20
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.64 E-value=1.2e-17 Score=121.56 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcccc-------CCCCCCeEEEEEecCCCCC-CCcchHHH
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRS-------QQLAGKPAGIFYSTGSQGG-GQETTPLT 78 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~-------~~l~gK~~~~~~s~G~~~g-g~~~~~~~ 78 (152)
+++..+ .+++.+||+|||++|+||+++++++|+||||+...+.. ..++||++++|+++|+... +....+..
T Consensus 60 ~~~~~~-~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~ 138 (184)
T 1rli_A 60 DDYDSI-IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQ 138 (184)
T ss_dssp -CHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHH
T ss_pred CCHHHH-HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHH
Confidence 344444 78999999999999999999999999999998643221 2478999999999876310 12335677
Q ss_pred HHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 79 AITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 79 ~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
+...+..+||.+++. +.. . +...+ ...++++.+++|+++|+++|.
T Consensus 139 l~~~l~~~G~~~~~~-~~~----------~-g~~~~--------~~~~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 139 FEHIFHFMGMSFKGY-VLG----------E-GNRPG--------DILRDHQALSAASRLLKRSDA 183 (184)
T ss_dssp HHHHHHHHTCEEEEE-EEE----------E-CSSTT--------GGGGCHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHcCCccceE-EEE----------c-cCCcc--------hhhcCHHHHHHHHHhhhhccc
Confidence 777888889998863 110 0 10001 123478999999999998763
No 21
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.63 E-value=4.8e-16 Score=115.00 Aligned_cols=115 Identities=19% Similarity=0.110 Sum_probs=84.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHH-HHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPL-TAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~-~~~~~l~~~g~~~v~ 92 (152)
.+++.+||+|||+||+|++++++.+|+|+|++.. ..++||++++|+++|+. |+ ..++. .+...+..+|+.+++
T Consensus 64 ~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~-~~-~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 64 VDATCNADGLIVATPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSP-AH-VLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSG-GG-GGHHHHTHHHHHHTTTCSEEC
T ss_pred HHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCc-ch-hhHHHHHHHHHHHHcCCEecc
Confidence 5789999999999999999999999999999863 47899999999997764 33 23453 577777889999987
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031823 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~ 149 (152)
.+..+. .+.+ .+..++. .++++.+++++++++++++.+++.+
T Consensus 138 ~~v~~~-----------~~~~---~~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~~ 179 (197)
T 2vzf_A 138 QSFFLV-----------QSQF---SVVDGKL-AVEDDVASQLNNAIDHFRLSLSSEP 179 (197)
T ss_dssp CCEEEE-----------SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCCG
T ss_pred ceEEEe-----------chhh---cccCCCC-cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 543321 0000 0111222 5899999999999999988765543
No 22
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.39 E-value=6.9e-17 Score=120.26 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=91.4
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+++.++ .++|.+||+|||+||+||+++|+.+|+|||++...+.. .++||++++++++|++.|+ ..+...+...|..+
T Consensus 62 ~~~~~~-~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~~l~~l 138 (199)
T 3s2y_A 62 APVLTM-AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGG-ARAQYHLRQSLVFL 138 (199)
Confidence 556666 89999999999999999999999999999999754322 6899999999987554443 34567777777788
Q ss_pred CcEEecC-CCcCCCCCccccccccCCCCCCceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031823 87 GMIFVPI-GYTFGAGMSEMEKVKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 87 g~~~v~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~~~~~~e~~~~a~~lG~~la~~~~~l~~~ 151 (152)
|+.+++. ++.+.. . ...++.+ +. ..|++..++++.+.+++++.+++.++.
T Consensus 139 g~~~v~~~~v~i~~------------~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~~ 190 (199)
T 3s2y_A 139 DAYVLNRPEAMIGQ------------V--TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSPR 190 (199)
Confidence 9998875 433211 0 0112212 22 345667788888999888877776543
No 23
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.59 E-value=9.8e-15 Score=118.38 Aligned_cols=104 Identities=21% Similarity=0.158 Sum_probs=85.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCC-CCCeEEEEEecCCCCCCCcchHHHHHHHHHH-cCcEEe
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVH-HGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~-~g~~~v 91 (152)
.+++.+||+||||||+|++++++++|+|+|++... .+ +||++++|+++|+. ++ +...+...|.. +|+.++
T Consensus 302 ~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~-~~---a~~~l~~~l~~~~g~~~~ 373 (414)
T 2q9u_A 302 ALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWS-NR---AVPDIVAELRDGCKADVY 373 (414)
T ss_dssp HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSS-CC---HHHHHHHHHHHTSCCBCC
T ss_pred HHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCC-ch---hHHHHHHHHHhhcCcEEc
Confidence 34899999999999999999999999999998642 45 89999999999875 33 46678788888 899988
Q ss_pred cCC-CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031823 92 PIG-YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l~~ 150 (152)
+.+ +.. . ..|+++++++|+++|+++++.++++++
T Consensus 374 ~~~~~~~---------------------~----~~p~~~~~~~~~~~g~~l~~~~~~~~~ 408 (414)
T 2q9u_A 374 DEKGITF---------------------K----FNYTEELLEQAYNAGVDLGKRAIAYCE 408 (414)
T ss_dssp CSSCEEE---------------------E----SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEE---------------------e----eCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 643 221 0 457999999999999999998888764
No 24
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.59 E-value=4.6e-15 Score=102.82 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=78.9
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCCchHH--HHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEADGILLGFPTRFGMMAAQ--FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~~--~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+...+++.++|.|||+||+|+++++++ ++.|+|++. ..++||++++|+++|+..+ .+...+.+.+...
T Consensus 36 ~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~-----~~l~~k~~~~~~t~g~~~~---~~~~~l~~~l~~~ 107 (137)
T 2fz5_A 36 FEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLA-----PKLKGKKVGLFGSYGWGSG---EWMDAWKQRTEDT 107 (137)
T ss_dssp TTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHG-----GGCSSCEEEEEEEESSCCS---HHHHHHHHHHHHT
T ss_pred cccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhh-----hhcCCCEEEEEEecCCCCc---hHHHHHHHHHHHC
Confidence 34445788999999999999999999999 999999985 3689999999999987422 4678888888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
|+.+++ .+.. . ..|++ +++++++|+++++
T Consensus 108 g~~~~~-~~~~----------~---------------g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 108 GATVIG-TAIV----------N---------------EMPDN--APECKELGEAAAK 136 (137)
T ss_dssp TCEEEE-EEEE----------E---------------SSSSS--CTHHHHHHHHHHT
T ss_pred CCEEcC-cEEE----------e---------------eCCCh--HHHHHHHHHHHhc
Confidence 999983 3321 1 23554 9999999999874
No 25
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.57 E-value=3.9e-15 Score=121.72 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=80.5
Q ss_pred CCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031823 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 6 ~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~ 85 (152)
+++++++ ++++.+||+||||||||++++.++|+.|++.+.. ..++||++++||||||+ |++. +.+.+.|..
T Consensus 307 ~~~~s~i-~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~----~~~~~K~~~~FGSyGWs-g~a~---~~~~~~l~~ 377 (410)
T 4dik_A 307 RPAISEI-LKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIID----KANYEKPVLVFGVHGWA-PSAE---RTAGELLKE 377 (410)
T ss_dssp CCCHHHH-HHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHH----HCCCCCEEEEEEECCCC-CTTS---CCHHHHHTT
T ss_pred CCCHHHH-HHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHh----cccCCCEEEEEECCCCC-cHHH---HHHHHHHHH
Confidence 3455666 7889999999999999999999999999999874 36799999999999985 5443 446667778
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHH
Q 031823 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYF 141 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~l 141 (152)
+|+++++..... ...++++++++|.+++++.
T Consensus 378 ~~~~~v~~~~~~-------------------------~~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 378 TKFRILSFTEIK-------------------------GSNMDERKIEEAISLLKKE 408 (410)
T ss_dssp SSCEEEEEEEEC-------------------------STTCCHHHHHHHHHHHHHH
T ss_pred CCCEEECcEEEE-------------------------CCCCCHHHHHHHHHHHHHh
Confidence 899998743211 1457888899998888764
No 26
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.55 E-value=2.5e-14 Score=106.09 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=76.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc---c------ccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL---W------RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV 84 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~---~------~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~ 84 (152)
.+++.+||+|||++|+||+++|+.+|+||||+... + ....++||++++++++|+..++.......+...+.
T Consensus 89 ~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~ 168 (208)
T 2hpv_A 89 TDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILN 168 (208)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHH
Confidence 67899999999999999999999999999998752 1 11358999999999887654432334455666777
Q ss_pred HcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 85 HHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
.+|+.+++. +.. . +. +......++.+++++++++++++
T Consensus 169 ~~G~~~~~~-~~~----------~-----~~-----~~~~~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 169 FIGVDQVDG-LFI----------E-----GI-----DHFPDRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp HTTCCEEEE-EEE----------E-----CT-----TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred hCCCCeeeE-EEE----------c-----cc-----cCCHHHHHHHHHHHHHHHHHHHh
Confidence 889988753 110 0 11 00011235567889999888875
No 27
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.55 E-value=1.4e-14 Score=116.85 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=83.4
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+||||||+|++++++.+|+|+|++...+... ++||++++|+++||. ++ +...+...|..+|+.+++.
T Consensus 302 ~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~-~~---a~~~l~~~l~~~g~~~~~~ 376 (404)
T 2ohh_A 302 VKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGN-GG---ATGTMKELLAEAGFDVACE 376 (404)
T ss_dssp HHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSS-CC---HHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCC-Ch---hHHHHHHHHHHCCCEEEeE
Confidence 458999999999999999999999999999987544334 799999999999874 33 4667888888899999864
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~ 146 (152)
+.. . ..++++++++++++|+++++.++
T Consensus 377 -~~~----------~---------------~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 377 -EEV----------Y---------------YVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp -EEE----------E---------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -EEE----------e---------------eCCCHHHHHHHHHHHHHHHHHHh
Confidence 321 1 35789999999999999988764
No 28
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.55 E-value=3.6e-15 Score=109.35 Aligned_cols=71 Identities=21% Similarity=0.135 Sum_probs=60.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+++.+||+|||+||+||+++|+.+|+||||+.. .++||++++|++ |+. ++ ..++..+...+..+||.+++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~-~~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGH-GG-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETT-TT-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCc-ch-hhHHHHHHHHHHHCCCEEcc
Confidence 6899999999999999999999999999999863 589999999865 553 33 34677788888889999987
No 29
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.52 E-value=5.1e-14 Score=103.43 Aligned_cols=79 Identities=20% Similarity=0.133 Sum_probs=63.0
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc---------cCCCCCCeEEEEEecCCCCCCC--cchHHHHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR---------SQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~---------~~~l~gK~~~~~~s~G~~~gg~--~~~~~~~~~~ 82 (152)
.+++.+||+|||+||+||+++|+++|+||||+..... ...++||++++|+++|+..++. ......+...
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~ 160 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF 160 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHH
Confidence 6789999999999999999999999999999974211 1358999999999988754432 3356667777
Q ss_pred HHHcCcEEec
Q 031823 83 LVHHGMIFVP 92 (152)
Q Consensus 83 l~~~g~~~v~ 92 (152)
+..+|+.+++
T Consensus 161 l~~~G~~~~~ 170 (201)
T 1t5b_A 161 LGFIGITDVN 170 (201)
T ss_dssp HHHTTCCCEE
T ss_pred HhhcCcceeE
Confidence 7788998875
No 30
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.52 E-value=3.9e-14 Score=99.82 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=79.7
Q ss_pred CHHHHh-hCCEEEEeccccC---CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031823 13 TPNELA-EADGILLGFPTRF---GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 13 ~~~~i~-~aD~iIlgsP~y~---g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
..+++. ++|.||||+|||+ |.+++.++.|++++.. ..+++|++++|+++....++...+...+.+.|...|+
T Consensus 42 ~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~ 117 (148)
T 3f6r_A 42 SAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGA 117 (148)
T ss_dssp CCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTC
T ss_pred CHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 345677 9999999999998 6999999999999863 4689999999998432223334567888888889999
Q ss_pred EEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031823 89 IFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~ 144 (152)
.+++.++.. . ..|++ +++++++++++|++.
T Consensus 118 ~~~~~~~~~----------~---------------~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 118 TIIAEGLKM----------E---------------GDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp EECSCCEEE----------E---------------SSGGG-CHHHHHHHHHHHHHT
T ss_pred EEeecceEe----------e---------------cCcch-HHHHHHHHHHHHHhh
Confidence 998754321 1 45777 999999999998763
No 31
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.46 E-value=2.4e-13 Score=109.31 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=82.3
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||+|++++++.+++|+|++.. ..++||++++|+++||. + .+...+.+.|..+|+.+++.
T Consensus 297 ~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~----~~~~~k~~~~~~s~g~~-~---~a~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 297 IKEILDARAVLVGSPTINNDILPVVSPLLDDLVG----LRPKNKVGLAFGAYGWG-G---GAQKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHH----HCCSSCEEEEEEEESSS-C---CHHHHHHHHHHHTTCEESCS
T ss_pred HHHHHHCCEEEEECCccCccchHHHHHHHHHHhc----cccCCCEEEEEEeCCCc-h---HHHHHHHHHHHHCCeEEecC
Confidence 4567899999999999999999999999999863 25799999999999873 3 34777888888899999875
Q ss_pred C-CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031823 94 G-YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~ 146 (152)
+ +.. . ..|+++++++++++|+++++.++
T Consensus 369 ~~~~~----------~---------------~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 369 PGPTV----------Q---------------WVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp SCCEE----------E---------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEE----------e---------------cCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 321 1 35789999999999999988653
No 32
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.46 E-value=6.4e-13 Score=106.96 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=83.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||+|++++++.+++|+|++.. ..++||++++|+++||. ..+...+.+.|..+|+.+++.
T Consensus 298 ~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~----~~l~~k~~~~f~t~g~~----~~a~~~l~~~l~~~G~~~~~~ 369 (402)
T 1e5d_A 298 MSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG----LRPQNKIGGAFGSFGWS----GESTKVLAEWLTGMGFDMPAT 369 (402)
T ss_dssp HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH----TCCCSCEEEEEEEESSS----CHHHHHHHHHHHHTTCBCCSC
T ss_pred HHHHHHCCEEEEECCccCCCchHHHHHHHHHhhh----cccCCCEEEEEEcCCCc----cHHHHHHHHHHHHCCCEEecC
Confidence 4567999999999999999999999999999863 36799999999998763 235778888888899998864
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031823 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~l 148 (152)
++. .. ..|+++++++++++|+++++.++..
T Consensus 370 ~~~---------------------~~----~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 370 PVK---------------------VK----NVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp CEE---------------------EE----SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceE---------------------Ee----eCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 322 11 3578999999999999999887654
No 33
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.45 E-value=1.1e-12 Score=97.85 Aligned_cols=79 Identities=27% Similarity=0.207 Sum_probs=60.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-------c------cCCCCCCeEEEEEecCC--CCCCC-----c
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-------R------SQQLAGKPAGIFYSTGS--QGGGQ-----E 73 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~-------~------~~~l~gK~~~~~~s~G~--~~gg~-----~ 73 (152)
.++|.+||+|||++|+||+++|+++|+||||+.... . .+.++||++.+++++|. ..++. .
T Consensus 82 ~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 161 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMN 161 (212)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGC
T ss_pred HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchh
Confidence 678999999999999999999999999999995421 0 24689999999999873 22222 2
Q ss_pred chHHHHHHHHHHcCcEEec
Q 031823 74 TTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 74 ~~~~~~~~~l~~~g~~~v~ 92 (152)
.....+...|...|++.++
T Consensus 162 ~~~~~l~~~l~~~G~~~~~ 180 (212)
T 3r6w_A 162 HADPWLRTALGFIGIDEVT 180 (212)
T ss_dssp CSHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHHHHHCCCceeE
Confidence 2345566667778998875
No 34
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.44 E-value=9e-13 Score=97.60 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=65.4
Q ss_pred CCCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---c--cCCCCCCeEEEEEecCCCC-----CCC-c
Q 031823 5 PKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---R--SQQLAGKPAGIFYSTGSQG-----GGQ-E 73 (152)
Q Consensus 5 ~~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~---~--~~~l~gK~~~~~~s~G~~~-----gg~-~ 73 (152)
.++|+..+ .+++.+||+|||++|+||+++|+.+|.||||+.... . ...|+||++.+++++|+.. ++. .
T Consensus 45 ~~~dv~~~-~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~ 123 (192)
T 3f2v_A 45 GKIDVAAE-QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVG 123 (192)
T ss_dssp CCCCHHHH-HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSC
T ss_pred CchhHHHH-HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccc
Confidence 34566556 899999999999999999999999999999986431 1 2478999999999987641 111 1
Q ss_pred chH----HHHHHHHHHcCcEEecC
Q 031823 74 TTP----LTAITQLVHHGMIFVPI 93 (152)
Q Consensus 74 ~~~----~~~~~~l~~~g~~~v~~ 93 (152)
..+ ..+...+...||+.++.
T Consensus 124 ~~~~~~l~pl~~~~~f~G~~~~~~ 147 (192)
T 3f2v_A 124 CSVAEVLRPFELTAKYCNADYRPP 147 (192)
T ss_dssp SCHHHHHHHHHHHHHHTTCEECCC
T ss_pred cCHHHHHHHHHHHHHhCCCeEeee
Confidence 122 23455667789998863
No 35
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.44 E-value=1.6e-13 Score=96.41 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=77.3
Q ss_pred HHHHhh-CCEEEEeccccC-CC--chHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 14 PNELAE-ADGILLGFPTRF-GM--MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 14 ~~~i~~-aD~iIlgsP~y~-g~--~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
.+++.+ +|.|||++|+|+ +. +++.++.|+|++.. ..+++|++++|++++...++...+...+...|..+|+.
T Consensus 42 ~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~ 117 (147)
T 1f4p_A 42 AGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAE 117 (147)
T ss_dssp STTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred HHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCe
Confidence 456788 999999999995 66 79999999999863 36899999999996543344556788888888889999
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
+++.++.. . ..|++ ++++++++++++++
T Consensus 118 ~~~~~~~~---------------------~----~~p~~-~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 118 IVQDGLRI---------------------D----GDPRA-ARDDIVGWAHDVRG 145 (147)
T ss_dssp ECSCCEEE---------------------E----SCGGG-GHHHHHHHHHHHHT
T ss_pred Ehhccccc---------------------c----cCchh-HHHHHHHHHHHHHh
Confidence 88654321 1 23555 88899999999875
No 36
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.41 E-value=1.2e-12 Score=97.87 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=61.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc---------cCCCCCCeEEEEEecCCCCCCC-----cchHHHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR---------SQQLAGKPAGIFYSTGSQGGGQ-----ETTPLTA 79 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~---------~~~l~gK~~~~~~s~G~~~gg~-----~~~~~~~ 79 (152)
.+++.+||+|||++|+||+++|+.+|+||||+..... .+.++||++.+++++|+..++. ......+
T Consensus 87 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l 166 (211)
T 3p0r_A 87 LNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYV 166 (211)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHH
T ss_pred HHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHH
Confidence 7789999999999999999999999999999864311 2368999999999987754332 2234556
Q ss_pred HHHHHHcCcEEec
Q 031823 80 ITQLVHHGMIFVP 92 (152)
Q Consensus 80 ~~~l~~~g~~~v~ 92 (152)
...|..+|+..+.
T Consensus 167 ~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 167 ASMMGFFGATNME 179 (211)
T ss_dssp HHHHHHTTCCSCE
T ss_pred HHHHHhCCCCeee
Confidence 6666778887664
No 37
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.38 E-value=3.4e-12 Score=96.40 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---c------cCCC-CCCeEEEEEecCCCCCCC------cchHH
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---R------SQQL-AGKPAGIFYSTGSQGGGQ------ETTPL 77 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~---~------~~~l-~gK~~~~~~s~G~~~gg~------~~~~~ 77 (152)
.+++.+||+|||++|+||+++|+.+|+||||+.... . .+.+ +||++.+++++|+..++. .....
T Consensus 89 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~ 168 (223)
T 3u7i_A 89 LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHK 168 (223)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHH
T ss_pred HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHH
Confidence 789999999999999999999999999999987531 0 1346 899999999987754331 12344
Q ss_pred HHHHHHHHcCcEEec
Q 031823 78 TAITQLVHHGMIFVP 92 (152)
Q Consensus 78 ~~~~~l~~~g~~~v~ 92 (152)
.+...|..+|+..+.
T Consensus 169 ~l~~~l~~~G~~~~~ 183 (223)
T 3u7i_A 169 YLKAMFNFLGIEDYQ 183 (223)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHCCCceeE
Confidence 556666778998875
No 38
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.36 E-value=1.8e-12 Score=95.88 Aligned_cols=85 Identities=20% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---c------cCCCCCCeEEEEEecCCC--CC--CCc
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---R------SQQLAGKPAGIFYSTGSQ--GG--GQE 73 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~---~------~~~l~gK~~~~~~s~G~~--~g--g~~ 73 (152)
+++..+ .+++.+||+|||++|+||+++|+.+|+||||+.... . .+.|+||++.+++|+|+. .. +..
T Consensus 62 ~~~~~~-~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~ 140 (196)
T 3lcm_A 62 AEMEKY-RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQD 140 (196)
T ss_dssp GGGHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSC
T ss_pred HHHHHH-HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhcc
Confidence 344444 789999999999999999999999999999996421 1 136899999999998764 11 101
Q ss_pred chHHHHHHHHHHcCcEEec
Q 031823 74 TTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 74 ~~~~~~~~~l~~~g~~~v~ 92 (152)
.....+...+...|+..++
T Consensus 141 ~~~~~l~~~l~~~G~~~~~ 159 (196)
T 3lcm_A 141 YGKVLKKQILKPCAISPVK 159 (196)
T ss_dssp TTHHHHHHTTGGGTCCCEE
T ss_pred CHHHHHHHHHHhcCCceee
Confidence 1123344455567777664
No 39
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.35 E-value=5.1e-12 Score=90.70 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=82.6
Q ss_pred CHHHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHHcCcE
Q 031823 13 TPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~-~g-g~~~~~~~~~~~l~~~g~~ 89 (152)
..+++.++|.||||+|||+ +.+++.++.|++++.. ..++||++++|++++.. .| ....++..+.+.+...|+.
T Consensus 40 ~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~ 115 (169)
T 1czn_A 40 DASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQ 115 (169)
T ss_dssp CGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCE
T ss_pred CHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 3568899999999999998 6799999999998853 47899999999998653 33 3456778888888889999
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031823 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~ 144 (152)
+++.-...++.+.....+..+.+.|. .++ . ..+++++.++++++++++.+.
T Consensus 116 ~~~~~~~~g~~~~~s~~~~~~~~~gl-~~~--~-~~~~~~~~~~~~~w~~~~~~~ 166 (169)
T 1czn_A 116 TVGYWPIEGYDFNESKAVRNNQFVGL-AID--E-DNQPDLTKNRIKTWVSQLKSE 166 (169)
T ss_dssp ECCCEECTTCCCSCCTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcceecchheeCCeeeee-eec--C-CCccccCHHHHHHHHHHHHHH
Confidence 98731111111111111111111221 121 1 235677889999999888654
No 40
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.35 E-value=5.8e-12 Score=103.01 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=83.6
Q ss_pred CCCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----ccCCCCCCeEEEEEecCCCCC--------C
Q 031823 5 PKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----RSQQLAGKPAGIFYSTGSQGG--------G 71 (152)
Q Consensus 5 ~~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~-----~~~~l~gK~~~~~~s~G~~~g--------g 71 (152)
.++|+..+ .+++.+||+|||++|+||+++|+.+|.||||+.... ....|+||++.++.++|+..+ +
T Consensus 279 ~~~d~~~~-~~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~ 357 (413)
T 3l9w_A 279 FNIDIAAE-QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPG 357 (413)
T ss_dssp SCCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCS
T ss_pred CcHHHHHH-HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccC
Confidence 34566666 899999999999999999999999999999986431 123689999999988875321 1
Q ss_pred CcchHHHHHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 72 QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 72 ~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
....+..+...+...||.+++. +.. +|+ ....+++..+.++++.++|...+++
T Consensus 358 ~~~~l~~l~~~~~~~G~~~l~~-~~~---------------~g~-------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 358 FDVLSQPLQATAIYCGLNWLPP-FAM---------------HCT-------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp GGGGGHHHHHHHHHTTCEECCC-EEE---------------CCS-------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhCCCeecce-EEE---------------cCC-------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1124456666777889998863 211 111 0223445567788888888877654
No 41
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.35 E-value=1.1e-12 Score=97.74 Aligned_cols=85 Identities=16% Similarity=0.056 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-cc-------------------cCCCCCCeEEEEEecC
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-WR-------------------SQQLAGKPAGIFYSTG 66 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~-~~-------------------~~~l~gK~~~~~~s~G 66 (152)
+|+.++ .++|.+||+|||++|+||+++|+++|+||||+... |. ...++||++.+++++|
T Consensus 59 ~d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g 137 (204)
T 2amj_A 59 YDVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWN 137 (204)
T ss_dssp CCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECS
T ss_pred ccHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCC
Confidence 345555 88999999999999999999999999999997421 11 2368999999999987
Q ss_pred CCCC-----CC---c----chHHHHHHHHHHcCcEEec
Q 031823 67 SQGG-----GQ---E----TTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 67 ~~~g-----g~---~----~~~~~~~~~l~~~g~~~v~ 92 (152)
...+ +. . ..+..+...+..+||..++
T Consensus 138 ~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G~~~~~ 175 (204)
T 2amj_A 138 APMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLP 175 (204)
T ss_dssp SCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTTCEECC
T ss_pred CChHHHccCcccccCCCHHHHHHHHHHHHHHcCCeecc
Confidence 6421 10 1 1222355667778999875
No 42
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.33 E-value=2.8e-12 Score=93.83 Aligned_cols=86 Identities=26% Similarity=0.328 Sum_probs=64.2
Q ss_pred CCCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc----ccCCCCCCeEEEEEecCCCC-----CCC----
Q 031823 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQG-----GGQ---- 72 (152)
Q Consensus 6 ~~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~----~~~~l~gK~~~~~~s~G~~~-----gg~---- 72 (152)
++|+..+ .+++.+||+|||++|+||+++|+.+|.||||+.... ..+.|+||++.+++|+|+.. ++.
T Consensus 39 ~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~ 117 (177)
T 3ha2_A 39 DFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFT 117 (177)
T ss_dssp TCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSC
T ss_pred cccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCC
Confidence 4555556 899999999999999999999999999999986431 13578999999999987642 111
Q ss_pred -cchHHHHHHHHHHcCcEEec
Q 031823 73 -ETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 73 -~~~~~~~~~~l~~~g~~~v~ 92 (152)
+..+..+...+...||+.++
T Consensus 118 ~~~~l~p~~~~~~~~G~~~~~ 138 (177)
T 3ha2_A 118 ISELMRPFEAFANKTKMMYLP 138 (177)
T ss_dssp HHHHTHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHhCCCeEeC
Confidence 12233344556678999885
No 43
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.32 E-value=1.7e-11 Score=87.89 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=82.7
Q ss_pred CCCHHHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHHcC
Q 031823 11 TITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHG 87 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~-~g-g~~~~~~~~~~~l~~~g 87 (152)
+...+++.++|.||||+|||+ +.+++.++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|
T Consensus 38 ~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g 113 (169)
T 1obo_A 38 QAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 113 (169)
T ss_dssp TCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTT
T ss_pred cCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCC
Confidence 334578999999999999996 6777889999999863 47899999999998652 22 23467788888888899
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031823 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~ 145 (152)
+.+++.-...++.+..+..+..+.+.|. ...+ ..+++.+.++++++++++.+.+
T Consensus 114 ~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~~---~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 114 GKTVGYWSTDGYDFNDSKALRNGKFVGL-ALDE---DNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp CEECCCEECTTCCCSCCTTEETTEESSE-EECT---TTCGGGHHHHHHHHHHHHHHHH
T ss_pred CEEEEeecCCCcccccchhhcCCceeeE-EeeC---CCccccCHHHHHHHHHHHHHHh
Confidence 9998741112221111111111112221 1211 1235677888888888876543
No 44
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.27 E-value=5.2e-12 Score=97.98 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=47.4
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc---------cCCCCCCeEEEEEecCCC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR---------SQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~---------~~~l~gK~~~~~~s~G~~ 68 (152)
.++|.+||+|||++|+||+++|+.+|+||||+..... .+.++||++.+++++|+.
T Consensus 88 ~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 88 QKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 5679999999999999999999999999999865321 246899999999998764
No 45
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.27 E-value=5.5e-11 Score=86.44 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=84.9
Q ss_pred CCCHHHHhhCCEEEEeccccC-CCch--------HHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CCC-CcchHHHH
Q 031823 11 TITPNELAEADGILLGFPTRF-GMMA--------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GGG-QETTPLTA 79 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~--------~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~-~gg-~~~~~~~~ 79 (152)
+...+++.++|.||||+|||+ +.++ ..++.|++++.. ..++||++++|++++.. .++ ...++..+
T Consensus 38 ~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l 113 (179)
T 1yob_A 38 RVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDALGEL 113 (179)
T ss_dssp GCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHHHHH
T ss_pred hCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHH
Confidence 344678999999999999998 8899 899999999863 47899999999996542 222 34567788
Q ss_pred HHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 80 ITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 80 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
.+.+...|+++++.-...++.|.....+..+.+.|. .++ . ..+++.+.++++++.+.+..
T Consensus 114 ~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl-~~d--~-~~~~~~~~~~i~~w~~~l~~ 173 (179)
T 1yob_A 114 YSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGL-ALD--L-DNQSGKTDERVAAWLAQIAP 173 (179)
T ss_dssp HHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSE-EEC--T-TTCGGGHHHHHHHHHHHHGG
T ss_pred HHHHHHCCCEEEEeeccCCCCcccchhhhcCceecc-ccC--C-CCCCcccHHHHHHHHHHHHH
Confidence 888888999999754344443332333332233333 121 1 12335677888888777654
No 46
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.25 E-value=8.1e-11 Score=85.24 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=84.3
Q ss_pred CCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC---cchHHHHHHHHHHcC
Q 031823 12 ITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ---ETTPLTAITQLVHHG 87 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~---~~~~~~~~~~l~~~g 87 (152)
...+++.++|.||||+||| .+.+++.++.|++.+.. ..++||++++|++++.. |.. ..++..+.+.|...|
T Consensus 38 ~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~-~~~~~f~~a~~~l~~~l~~~G 112 (175)
T 1ag9_A 38 SSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQE-DYAEYFCDALGTIRDIIEPRG 112 (175)
T ss_dssp CCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTT-TTTTSTTHHHHHHHHHHTTTT
T ss_pred CChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhh----cccCCCEEEEEEECCCc-chhHHHHHHHHHHHHHHHHCC
Confidence 3467899999999999997 58889999999999863 47899999999996542 222 356788888888899
Q ss_pred cEEecCCCcCCCCCccccccc-cCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031823 88 MIFVPIGYTFGAGMSEMEKVK-GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~ 146 (152)
+.+++.-...++.|..+..+. .+.+.|. ..+ . ..+++.+.+++++++++|.+.+.
T Consensus 113 ~~~v~~~~~~g~~~~~s~~~~~~~~~~gl-~~~--~-~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 113 ATIVGHWPTAGYHFEASKGLADDDHFVGL-AID--E-DRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp CEECCCEECTTCCCSCCSCEEETTEESSE-EEC--T-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCCCcccccchheeeCCeEEee-ecC--C-CCcccccHHHHHHHHHHHHHHhh
Confidence 999974222333222111111 1111222 121 1 23556788899999998876543
No 47
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.24 E-value=1.8e-11 Score=92.65 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=47.3
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~---------~~~~l~gK~~~~~~s~G~~ 68 (152)
.+++.+||+|||++|+||+++++.+|+||||+.... ..+.|+||++.+++|+|+.
T Consensus 87 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 87 QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 778999999999999999999999999999986431 1257899999999998754
No 48
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.22 E-value=1.1e-10 Score=84.27 Aligned_cols=124 Identities=16% Similarity=0.102 Sum_probs=81.8
Q ss_pred CHHHHhhCCEEEEeccccC-CCc----hHHHHHHH-HHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHH
Q 031823 13 TPNELAEADGILLGFPTRF-GMM----AAQFKAFL-DATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLV 84 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~-g~~----~~~~k~fl-d~l~~~~~~~~l~gK~~~~~~s~G~~-~g-g~~~~~~~~~~~l~ 84 (152)
..+++.++|.||||+|||+ +.+ +..++.|+ +++.. ..++||++++|++++.. .+ ....++..+.+.|.
T Consensus 39 ~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~ 114 (173)
T 2fcr_A 39 DPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFA 114 (173)
T ss_dssp CGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHH
T ss_pred ChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHH
Confidence 3567889999999999998 899 89999999 98853 47899999999996542 11 12356788888888
Q ss_pred HcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031823 85 HHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~ 144 (152)
..|+.+++.-...++.+..+..+..+.+.|. .... ...++.+.++++++.+.+.+.
T Consensus 115 ~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~ 170 (173)
T 2fcr_A 115 KQGAKPVGFSNPDDYDYEESKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSE 170 (173)
T ss_dssp HTTCEEECCBCGGGSCCSCCTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHH
T ss_pred HCCCEEEeecccCCcccccchhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHH
Confidence 8999999743233333222222222223333 2221 112345677777777777654
No 49
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.19 E-value=1.1e-10 Score=84.97 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=82.0
Q ss_pred CCCHHHHhhCCEEEEeccccC-CCch--------HHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHH
Q 031823 11 TITPNELAEADGILLGFPTRF-GMMA--------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTA 79 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~--------~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~-~g-g~~~~~~~~ 79 (152)
+...+++.++|.||||+|||+ +.++ ..++.|++++.. ..++||++++|++++.. .+ ....+...+
T Consensus 39 ~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l 114 (182)
T 2wc1_A 39 RADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNALFFL 114 (182)
T ss_dssp GCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHHHHH
T ss_pred cCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHHHHH
Confidence 344678999999999999999 8888 789999999863 47899999999997642 12 224567888
Q ss_pred HHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031823 80 ITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 80 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~ 145 (152)
.+.|...|+.+++.-...++.+.....+..+.+.|. ..+ .. ..++...++++.+.+.|.+.+
T Consensus 115 ~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl-~~d--~~-~~~~~~~~~~~~w~~~l~~~l 176 (182)
T 2wc1_A 115 HEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGL-ALD--QD-NQAALTPERLKGWLSLIAADF 176 (182)
T ss_dssp HHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSE-EEC--TT-TCGGGHHHHHHHHHHHTHHHH
T ss_pred HHHHHHCCCEEEEeecCCCcCcccchhhhcCceeee-ecc--CC-CCccccHHHHHHHHHHHHHHH
Confidence 888888999999753233332221111211112222 111 11 112345777778887776544
No 50
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.17 E-value=2.4e-11 Score=91.55 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=62.4
Q ss_pred CCCCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCc-c-------------------ccCCCCCCeEEEEEecC
Q 031823 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-W-------------------RSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 7 ~~~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~-~-------------------~~~~l~gK~~~~~~s~G 66 (152)
+|+..+ .+++.+||+|||++|+||+++|+.+|.||||+... | ..+.|+||++.++.|+|
T Consensus 72 ~Dv~~~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G 150 (218)
T 3rpe_A 72 YDIESE-IENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWN 150 (218)
T ss_dssp CCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECS
T ss_pred cCHHHH-HHHHHhCCEEEEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCC
Confidence 344444 88999999999999999999999999999998532 1 02368999999999987
Q ss_pred CCC-----CCC---cchHH----HHHHHHHHcCcEEec
Q 031823 67 SQG-----GGQ---ETTPL----TAITQLVHHGMIFVP 92 (152)
Q Consensus 67 ~~~-----gg~---~~~~~----~~~~~l~~~g~~~v~ 92 (152)
... ++. ...++ .+...+...||+.++
T Consensus 151 ~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f~G~~~l~ 188 (218)
T 3rpe_A 151 APREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLP 188 (218)
T ss_dssp SCTHHHHCTTSTTTTCHHHHHTHHHHHHHHHTTCEECC
T ss_pred CChHhhcccccccccCCHHHHHHHHHHHHHhCCCEEec
Confidence 652 111 11222 345666778999885
No 51
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.15 E-value=9.1e-11 Score=84.44 Aligned_cols=107 Identities=10% Similarity=-0.105 Sum_probs=77.8
Q ss_pred CCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 11 TITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+...+++.++|.||||+||| ++.++..++.|++.+.... ...+++|++++|+++....++...+...+.+.|...|++
T Consensus 48 ~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~-~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~ 126 (167)
T 1ykg_A 48 DYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGE 126 (167)
T ss_dssp GCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTT-CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCE
T ss_pred hCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhcc-ccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 33456788999999999999 7899999999999986421 136899999999975332233345677888888888998
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
++..... .++++.+.++++++++++.++.
T Consensus 127 ~v~~~~~-----------------------------~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 127 RLLDRVD-----------------------------ADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp ESSCCEE-----------------------------ECTTCHHHHHHHHHHHHHHHHT
T ss_pred Eeeccee-----------------------------cCCCcHHHHHHHHHHHHHHHHh
Confidence 8754211 1234567788888888776654
No 52
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.10 E-value=1.6e-10 Score=82.93 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=54.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..++.++|.||||+|+|++++++.++.|++++ .++||++++|+++||. +...++..+.+.+. +..++
T Consensus 73 ~~~l~~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~--~~g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 73 LFHPEKYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGS--GIGNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp CSCGGGCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSC--CSHHHHHHHHHHCT--TSEEC
T ss_pred ccChhhCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCC--CccHHHHHHHHHcC--CCEee
Confidence 56799999999999999999999999999985 5799999999999884 22345666666553 56665
No 53
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.05 E-value=5.2e-10 Score=81.02 Aligned_cols=67 Identities=13% Similarity=0.329 Sum_probs=54.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..++.++|.||||+|+|++++++.++.|++++ .++||++++|+++||+. ...++..+.+.+. +..+.
T Consensus 82 ~~~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 82 KENIGTYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp CTTGGGCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSEEC
T ss_pred cccHhHCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCeec
Confidence 46789999999999999999999999999997 47999999999998752 3345666666543 55554
No 54
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=4.6e-10 Score=87.48 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=46.4
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCcc-----------------ccCCCCCCeEEEEEecCCC
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----------------RSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~-----------------~~~~l~gK~~~~~~s~G~~ 68 (152)
.+++.+||.|||.+|+||+++|+.+|.||||+...- ..+.|+||.+.++.|+|+.
T Consensus 107 ~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 107 QEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 678999999999999999999999999999985321 1246789999999998763
No 55
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.02 E-value=7.5e-11 Score=83.63 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=52.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..++.+||+||||+|+|++++++.++.|++++. .+.+|++++|+++||..|+ +...+.+.+. +..+++
T Consensus 71 ~~~l~~~d~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~g~---~~~~l~~~~~--~~~~~~ 138 (151)
T 3edo_A 71 NIDYNNYDLILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNHKA---YVSHFNEWAD--GLNVIG 138 (151)
T ss_dssp CCCGGGCSEEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCHHH---HHHHHHHHTT--TSEEEE
T ss_pred hhCHhhCCEEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCCCc---HHHHHHHHcC--CCeeec
Confidence 568999999999999999999999999999974 4688999999988774333 3455555542 555543
No 56
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=98.96 E-value=3.3e-11 Score=84.81 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=71.6
Q ss_pred HHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe----cCCCCCCCcchHHHHHHHHHHcCc
Q 031823 14 PNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS----TGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s----~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
.+++.++|.||||+||| ++.+++.++.|++.+... ...+++|++++|++ |+|. + .+...+.+.|...|+
T Consensus 41 ~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~-~---~a~~~l~~~l~~~G~ 114 (147)
T 2hna_A 41 LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTF-C---GAIDKLEAELKNSGA 114 (147)
T ss_dssp SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCS-S---SCTTHHHHHHHHHTC
T ss_pred HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHH-H---HHHHHHHHHHHHcCC
Confidence 34577899999999999 899999999999998531 12688999999994 4332 2 235557677777899
Q ss_pred EEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031823 89 IFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~ 145 (152)
+++...... | ..+++++.+.+++++++++..+
T Consensus 115 ~~~~~~~~~-----------------------d--~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 115 KQTGETLKI-----------------------N--ILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp EECSSCBCC-----------------------C--CSSCCSSCSCCHHHHHHHHHHH
T ss_pred eEeeeeEEE-----------------------e--cCCCCCcHHHHHHHHHHHHHHh
Confidence 988654331 0 2244455667777777776543
No 57
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=98.92 E-value=1.7e-09 Score=77.25 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=73.8
Q ss_pred CCCHHHHhhCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CCC-CcchHHHHHHHHHHcC
Q 031823 11 TITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GGG-QETTPLTAITQLVHHG 87 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~-~gg-~~~~~~~~~~~l~~~g 87 (152)
+....++.++|.||||+|||+ +.++..++.|++.+.. ..+++|++++|+++... .++ ...+...+.+.|..
T Consensus 36 ~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~----~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~-- 109 (164)
T 2bmv_A 36 KASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA-- 109 (164)
T ss_dssp GCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCT----HHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--
T ss_pred cCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhh----hhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--
Confidence 344678999999999999996 6778889999998753 35789999999983321 221 23456667666654
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
+++++.....++.+.....+..+...+. ... . ..+++++.++++++++++.+
T Consensus 110 ~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~--~-~~~~~~~~~~~~~w~~~l~~ 161 (164)
T 2bmv_A 110 GKVVGQTSTDGYHFEASKAVEGGKFVGL-VID--E-DNQDDLTDERISKWVEQVKG 161 (164)
T ss_dssp SEECCCEESTTCCCSCCTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHTT
T ss_pred CEEEccccCCCccccchhhhhcCcccCc-cCC--C-CCccccCHHHHHHHHHHHHH
Confidence 6776531111221111111111111111 111 1 22345678999999988864
No 58
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=98.86 E-value=1.3e-09 Score=80.43 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=72.3
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCC-CCcchHHHHHHHHHHcCcEEecCC
Q 031823 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG-GQETTPLTAITQLVHHGMIFVPIG 94 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~g-g~~~~~~~~~~~l~~~g~~~v~~~ 94 (152)
++.++|.|||++|||+|.++..++.|++.+.... ...|+||++++|+++....+ ....+...+.+.|..+|++++...
T Consensus 64 ~l~~~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~-~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~ 142 (191)
T 1bvy_F 64 NLPREGAVLIVTASYNGHPPDNAKQFVDWLDQAS-ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADR 142 (191)
T ss_dssp CCCSSSEEEEEECCBTTBCCTTTHHHHHHHHTCC-SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEE
T ss_pred hhhhCCeEEEEEeecCCCcCHHHHHHHHHHHhcc-chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeecc
Confidence 5778999999999999999999999999986431 13589999999996522111 122356778888888898877532
Q ss_pred CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 031823 95 YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQ-AFHQGKYFAGITK 146 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~-a~~lG~~la~~~~ 146 (152)
.. . | . +++++. ++++++.|++.++
T Consensus 143 ~~---------------------~--d--~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 143 GE---------------------A--D--A---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp EE---------------------E--E--T---TSCHHHHHHHHHHHHHHHHH
T ss_pred EE---------------------E--e--c---CCChHHHHHHHHHHHHHHhc
Confidence 21 1 1 1 234555 8888888887665
No 59
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=98.57 E-value=1.4e-07 Score=63.91 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=56.3
Q ss_pred hCCEEEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCC-CcchHHHHHHHHHHcCcEEecCCCc
Q 031823 19 EADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 19 ~aD~iIlgsP~y~-g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg-~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
.+|.|||++|||+ +.++..++.|++. +++|.+++|++++...+. .......+.+.+ +... .+.
T Consensus 32 ~~~~ii~g~pt~~~g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~---~~~~---~~~ 96 (119)
T 2xod_A 32 IDEDFILITYTTGFGNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKY---EVPI---VSK 96 (119)
T ss_dssp CCSCEEEEECCBTTTBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCE---EEE
T ss_pred cCCCEEEEEeecCCCcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHh---CCcc---EEE
Confidence 5999999999995 8999999999976 367899999985321121 122344444332 1110 111
Q ss_pred CCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031823 97 FGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la 142 (152)
+. ..|++++++++++++++++
T Consensus 97 ---------------------~~----~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 97 ---------------------FE----LSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------------------EE----TTCCHHHHHHHHHHHHHHT
T ss_pred ---------------------Ee----cCCCHHHHHHHHHHHHHhc
Confidence 11 4588999999999999875
No 60
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=66.01 Aligned_cols=82 Identities=13% Similarity=-0.096 Sum_probs=62.3
Q ss_pred CCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031823 10 PTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
.+...+++.+++.+||++||| .|.++..++.|++.+... ...++|+.+++||.+.+..+..-.+...+.+.|..+|+
T Consensus 77 ~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa 154 (219)
T 3hr4_A 77 DKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGA 154 (219)
T ss_dssp GGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTC
T ss_pred ccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCC
Confidence 444567888999999999999 788888899999988642 13579999999997543322233456777788888899
Q ss_pred EEecC
Q 031823 89 IFVPI 93 (152)
Q Consensus 89 ~~v~~ 93 (152)
+.+..
T Consensus 155 ~~l~~ 159 (219)
T 3hr4_A 155 SQLTP 159 (219)
T ss_dssp EESSC
T ss_pred CEeeC
Confidence 98754
No 61
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=98.29 E-value=2.6e-06 Score=73.50 Aligned_cols=112 Identities=13% Similarity=-0.060 Sum_probs=79.9
Q ss_pred CCCCCHHHHhhC-CEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031823 9 VPTITPNELAEA-DGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~a-D~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+...+++.++ |.|||++||| +|.++..++.|++.+.... ...|+||.+++|+.+....+....+...+.+.|..+
T Consensus 87 l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~l 165 (682)
T 2bpo_A 87 VENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAA 165 (682)
T ss_dssp TTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHT
T ss_pred hHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHC
Confidence 455556778899 9999999999 9999999999999987532 135899999999954322233345677788888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031823 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~~~~~ 147 (152)
|++.+..... . | ..+ ++..+.++.+++.|...+..
T Consensus 166 Ga~~l~~~~~---------------------~--D--~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 166 GAIRLGKLGE---------------------A--D--DGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp TCEECSCCEE---------------------E--E--TTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEeECcEE---------------------E--e--cCC-cccHHHHHHHHHHHHHHHHh
Confidence 9998864211 0 1 122 34567778888887765544
No 62
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=97.61 E-value=9.1e-05 Score=63.26 Aligned_cols=72 Identities=13% Similarity=0.016 Sum_probs=54.3
Q ss_pred hCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 19 EADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 19 ~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
+++.+||+|||| +|.++..++.|++.+... ...|+||.+++||.+....+..-.+...+.+.|..+|.+.+.
T Consensus 70 ~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~ 142 (618)
T 3qe2_A 70 DNALVVFCMATYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIF 142 (618)
T ss_dssp TTCEEEEEEECBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESS
T ss_pred cCcEEEEEcCccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEee
Confidence 489999999999 899999999999998632 147899999999943221122233566677777888998874
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=97.53 E-value=0.00031 Score=60.70 Aligned_cols=84 Identities=14% Similarity=-0.109 Sum_probs=60.5
Q ss_pred CCCCHHHHhhCCEEEEecccc-CCCchHHHHHHHHHhcCccc--------------------------------------
Q 031823 10 PTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWR-------------------------------------- 50 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~-------------------------------------- 50 (152)
.+....++..++.|||++||| +|.++..++.|++.+.....
T Consensus 48 ~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 127 (688)
T 1tll_A 48 EEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNF 127 (688)
T ss_dssp TTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC-------------------
T ss_pred ccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccc
Confidence 344456778899999999999 99999999999998764310
Q ss_pred --cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 51 --SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 51 --~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
...|+|+.+++||.+......--.....+.+.|..+|.+.+..
T Consensus 128 ~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~ 172 (688)
T 1tll_A 128 ESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILK 172 (688)
T ss_dssp ---CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred cccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCceeec
Confidence 1358999999999542111222345667777788889888753
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=97.12 E-value=0.0017 Score=45.09 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=54.8
Q ss_pred HhhCCEEEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC-cchHHHHHHHHHHcCcEEecCC
Q 031823 17 LAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ-ETTPLTAITQLVHHGMIFVPIG 94 (152)
Q Consensus 17 i~~aD~iIlgsP~y-~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~-~~~~~~~~~~l~~~g~~~v~~~ 94 (152)
+...|.+||++||| .|.+|..+..|++.- .++..++++++....|.. -.+...+. ...+..++. .
T Consensus 41 ~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~---~~~~~~~~~-~ 107 (139)
T 1rlj_A 41 DHVDTPFVLVTYTTNFGQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAKSADTIS---RQYQVPILH-K 107 (139)
T ss_dssp SCCCSCEEEEECCBGGGBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHHH---HHHTCCEEE-E
T ss_pred cccCCCEEEEEcCcCCCcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHHHHHHHH---HHcCCCCcc-e
Confidence 45568899999999 799999999999642 346788887654321221 11122222 234544332 1
Q ss_pred CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 95 YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
+. ..+++++.++++++.+++..
T Consensus 108 ~e---------------------------l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 108 FE---------------------------LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp EE---------------------------TTCCHHHHHHHHHHHHHHHH
T ss_pred EE---------------------------EcCCHHHHHHHHHHHHHHHH
Confidence 11 23678899999998888764
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=96.60 E-value=0.0017 Score=45.88 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=56.5
Q ss_pred HhhCCEEEEeccccC-----CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC-cchHHHHHHHHHHcCcEE
Q 031823 17 LAEADGILLGFPTRF-----GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ-ETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 17 i~~aD~iIlgsP~y~-----g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~-~~~~~~~~~~l~~~g~~~ 90 (152)
+...+-+|+++|||. |.++.++..|++.+. ..++..++++++....|.. -.+...+.+. .+..+
T Consensus 56 ~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~k---~~vP~ 125 (153)
T 3n3a_C 56 IQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIARK---CGVPW 125 (153)
T ss_dssp CCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHHH---HTCCE
T ss_pred cccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHHH---hCCCe
Confidence 456789999999997 999999999997542 2456788888753211211 1233333333 23211
Q ss_pred ecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031823 91 VPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~a~~lG~~la~ 143 (152)
+ +. +. ..++++|.++++++.+++..
T Consensus 126 l---~k---------------------fE----L~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 126 L---YR---------------------FE----LMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp E---EE---------------------EE----TTCCHHHHHHHHHHHHHHHH
T ss_pred E---EE---------------------Ee----CCCCHHHHHHHHHHHHHHHh
Confidence 1 11 11 45789999999998887654
No 66
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=53.22 E-value=10 Score=24.75 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=27.3
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.+++.+||+||+++.+-..+ . .+|.||++.-..+
T Consensus 48 n~Lt~~~I~~AD~VIia~d~~v~~--------~---------~RF~gk~v~~~~v 85 (106)
T 2m1z_A 48 NELTEKDVNIGEVVIFAVDTKVRN--------K---------ERFDGKVVLEVPV 85 (106)
T ss_dssp SCCCHHHHHHCSEEEEEESSCCST--------H---------HHHTTSEEEEECT
T ss_pred CCCCHHHHhhCCEEEEeccccccc--------h---------hccCCCcEEEEcH
Confidence 456789999999999999874310 1 2457888876655
No 67
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=52.12 E-value=7.8 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=29.2
Q ss_pred HHHHh--hCCEEEE-eccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELA--EADGILL-GFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~--~aD~iIl-gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++++. ++|+||+ |.+.+.....+.+..|+.+... ++|+++.+.++
T Consensus 67 ~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~G 114 (212)
T 3efe_A 67 LDECTLESKDLLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICGA 114 (212)
T ss_dssp GGGCCCCTTCEEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETHH
T ss_pred HHHCCccCCCEEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcHH
Confidence 45555 8999998 3333334556778888877643 56777766553
No 68
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=50.27 E-value=8 Score=28.08 Aligned_cols=38 Identities=13% Similarity=-0.076 Sum_probs=26.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
..++.++|.|||.||. .++.|++.+.. .+.+++++++|
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l~~-----~l~~~~~~aVG 82 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWLKD-----QWPKATYYAVG 82 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHHTT-----CCCSSEEEESS
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHHHh-----hCcCCeEEEEC
Confidence 5667889999999997 66778887642 34455554444
No 69
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=46.63 E-value=15 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=28.2
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.++|.+||+|||++-+-- +. ..+|.||++.-..+
T Consensus 51 n~Lt~~~I~~Ad~VIiA~d~~v-----------~~------~~RF~GK~v~~~~v 88 (111)
T 2kyr_A 51 NRLTAQDIAEATIIIHSVAVTP-----------ED------NERFESRDVYEITL 88 (111)
T ss_dssp SCCCHHHHHHCSEEEEEESSCC-----------TT------GGGGTTSCEEEEET
T ss_pred CCCCHHHHHhCCEEEEEeCCCc-----------Cc------hhhcCCCeEEEeCH
Confidence 4567899999999999988731 00 13678999877765
No 70
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=44.44 E-value=17 Score=23.68 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.8
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.+++.+||+|||++-+-- | ..+|.||++.-..+
T Consensus 48 n~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v 84 (106)
T 2r48_A 48 NKLTEEEIREADAIIIAADRSV-----------N-------KDRFIGKKLLSVGV 84 (106)
T ss_dssp SCCCHHHHHHCSEEEEEESSCC-----------C-------CGGGTTSBEEEECH
T ss_pred CCCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCH
Confidence 4567889999999999988631 1 13678999877665
No 71
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.78 E-value=16 Score=23.71 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=27.7
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.+++.+||+|||++-+-- | ..+|.||++.-..+
T Consensus 48 n~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v 84 (106)
T 2r4q_A 48 HKLTAQEIEDAPAIIVAADKQV-----------E-------MERFKGKRVLQVPV 84 (106)
T ss_dssp SCCCHHHHHHCSCEEEEESSCC-----------C-------CGGGTTSBEEEECH
T ss_pred CCCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCH
Confidence 4567889999999999988631 1 13678999877665
No 72
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=41.02 E-value=16 Score=26.70 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=26.3
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
+.++.++|.|||.||. .++.|++.+...|. .+.+.+++++|
T Consensus 53 l~~l~~~d~vifTS~~-------aV~~~~~~l~~~~~--~~~~~~i~aVG 93 (254)
T 4es6_A 53 MLDLDRYCAVVVVSKP-------AARLGLERLDRYWP--QPPQQTWCSVG 93 (254)
T ss_dssp HHTGGGCSEEEECSHH-------HHHHHHHHHHHHCS--SCCSCEEEESS
T ss_pred HHhccCCCEEEEECHH-------HHHHHHHHHHHhCC--CcccCEEEEEC
Confidence 3556789999999997 56777777653321 23345555544
No 73
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=39.92 E-value=16 Score=27.08 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=19.8
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcC
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~ 47 (152)
.++.++|.|||.||. .++.|++.+..
T Consensus 62 ~~l~~~d~vifTS~n-------aV~~~~~~l~~ 87 (269)
T 3re1_A 62 FELLNYSAVIVVSKP-------AARLAIELIDE 87 (269)
T ss_dssp HTGGGSSEEEECSHH-------HHHHHHHHHHH
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHHH
Confidence 456789999999997 56777776643
No 74
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=38.50 E-value=92 Score=23.53 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=38.8
Q ss_pred HHHHhh----CCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 14 PNELAE----ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 14 ~~~i~~----aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
++++.+ .|.+|+.+|. ......++.+.. .|.+..++.+.|-. +.....+.+.....|+.
T Consensus 62 l~el~~~~~~~DvaIi~vp~------~~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 62 VKEALAEHPEINTSIVFVPA------PFAPDAVYEAVD-------AGIRLVVVITEGIP----VHDTMRFVNYARQKGAT 124 (297)
T ss_dssp HHHHHHHCTTCCEEEECCCG------GGHHHHHHHHHH-------TTCSEEEECCCCCC----HHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 566654 8999999986 222333334321 45665565555432 22355677777788999
Q ss_pred EecCC
Q 031823 90 FVPIG 94 (152)
Q Consensus 90 ~v~~~ 94 (152)
+++..
T Consensus 125 viGPN 129 (297)
T 2yv2_A 125 IIGPN 129 (297)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 98754
No 75
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=38.02 E-value=1.2e+02 Score=22.90 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=39.8
Q ss_pred HHHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 14 PNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~---~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++. ..|.+|+.+|. ......++.+.. .|.+..++.+.|-. +.....+.+.....|+.+
T Consensus 62 l~el~~~~~~Dv~ii~vp~------~~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~v 124 (294)
T 2yv1_A 62 VKEAVKETDANASVIFVPA------PFAKDAVFEAID-------AGIELIVVITEHIP----VHDTMEFVNYAEDVGVKI 124 (294)
T ss_dssp HHHHHHHHCCCEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEccCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 45555 58999999886 333444444432 46675565555432 223556777777889999
Q ss_pred ecCC
Q 031823 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
++..
T Consensus 125 iGPN 128 (294)
T 2yv1_A 125 IGPN 128 (294)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 8754
No 76
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=36.71 E-value=1.3e+02 Score=22.46 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=38.7
Q ss_pred HHHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 14 PNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~---~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++. ..|.+|+.+|.. .....++..++ .|+++.++.+.|- .......+.+.....|+.+
T Consensus 56 l~el~~~~~~D~viI~tP~~--~~~~~~~ea~~-----------~Gi~~iVi~t~G~----~~~~~~~l~~~A~~~gv~l 118 (288)
T 2nu8_A 56 VREAVAATGATASVIYVPAP--FCKDSILEAID-----------AGIKLIITITEGI----PTLDMLTVKVKLDEAGVRM 118 (288)
T ss_dssp HHHHHHHHCCCEEEECCCGG--GHHHHHHHHHH-----------TTCSEEEECCCCC----CHHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEecCHH--HHHHHHHHHHH-----------CCCCEEEEECCCC----CHHHHHHHHHHHHHcCCEE
Confidence 55555 499999999983 22333332222 4666655555432 1222456777778889999
Q ss_pred ecCC
Q 031823 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
++..
T Consensus 119 iGPN 122 (288)
T 2nu8_A 119 IGPN 122 (288)
T ss_dssp ECSS
T ss_pred EecC
Confidence 8754
No 77
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=34.89 E-value=27 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031823 131 LAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 131 ~~~a~~lG~~la~~~~~l 148 (152)
...+.++|+|||++|+--
T Consensus 118 EADaqEFGERiaeLAkiR 135 (162)
T 1f35_A 118 EADALEFGERLSDLAKIR 135 (162)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 356789999999999753
No 78
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=34.79 E-value=15 Score=29.20 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..|||||++|||
T Consensus 245 ~~aDGlIVSTPT 256 (365)
T 3pfn_A 245 VQGDGVIVSTPT 256 (365)
T ss_dssp ECSSEEEEECGG
T ss_pred EecCeEEEeCCc
Confidence 469999999999
No 79
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=34.76 E-value=1.8e+02 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 54 LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 54 l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
++|+.+++++.+....|........+...+..+|+++.
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 78999888874332224434567777777777888764
No 80
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=34.18 E-value=23 Score=24.31 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=10.6
Q ss_pred ccCCCchHHHHHHHHHhcC
Q 031823 29 TRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 29 ~y~g~~~~~~k~fld~l~~ 47 (152)
.|+++|+..+|.|++.+..
T Consensus 15 ~~~~~m~~~Lq~~L~~ll~ 33 (143)
T 3cpt_A 15 LYFQGSADDLKRFLYKKLP 33 (143)
T ss_dssp -------CHHHHHHHHHGG
T ss_pred hhhhhhHHHHHHHHHHHHh
Confidence 4899999999999999864
No 81
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=32.50 E-value=94 Score=24.04 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=37.1
Q ss_pred CCEEEE---------------eccccCCC--chHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031823 20 ADGILL---------------GFPTRFGM--MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 20 aD~iIl---------------gsP~y~g~--~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~ 82 (152)
+|+|++ ..|++|+. -.-+.+.+.|-+.-....+.++|+.++++|-. ..+...+...
T Consensus 102 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-------~~va~Sl~~~ 174 (321)
T 1oth_A 102 ADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDG-------NNILHSIMMS 174 (321)
T ss_dssp CSEEEEECSCHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCS-------SHHHHHHHTT
T ss_pred CCEEEEeCCChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCc-------hhhHHHHHHH
Confidence 788888 46777643 23345556665431111257889888876541 1345556555
Q ss_pred HHHcCcEEe
Q 031823 83 LVHHGMIFV 91 (152)
Q Consensus 83 l~~~g~~~v 91 (152)
+..+|+++.
T Consensus 175 ~~~~G~~v~ 183 (321)
T 1oth_A 175 AAKFGMHLQ 183 (321)
T ss_dssp TGGGTCEEE
T ss_pred HHHcCCeEE
Confidence 555666653
No 82
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=32.47 E-value=18 Score=25.86 Aligned_cols=45 Identities=4% Similarity=-0.065 Sum_probs=27.0
Q ss_pred CHHHHhhCCEEEEeccccCC----CchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 13 TPNELAEADGILLGFPTRFG----MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g----~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++++.++|.||+..-.-.. .-.+.+..|+.+... ++|+++.+.+
T Consensus 68 ~~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~-------~g~~iaaIC~ 116 (209)
T 3er6_A 68 QWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHL-------KGSKIVAIDT 116 (209)
T ss_dssp CGGGCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred CccccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHh-------cCCEEEEEcH
Confidence 45666789999984321111 125667777777642 5677666654
No 83
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=32.12 E-value=1.5e+02 Score=21.85 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCC-CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l-~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+++.+||.||+..|+. ..++..++.+.. .+ +++.+. -.+ . ........+...+...|..+++
T Consensus 65 ~~~~~~aDvvi~~vp~~-----~~~~~v~~~l~~-----~l~~g~ivv-~~s--t---~~~~~~~~~~~~~~~~g~~~~~ 128 (296)
T 3qha_A 65 VADVAAADLIHITVLDD-----AQVREVVGELAG-----HAKPGTVIA-IHS--T---ISDTTAVELARDLKARDIHIVD 128 (296)
T ss_dssp HHHHTTSSEEEECCSSH-----HHHHHHHHHHHT-----TCCTTCEEE-ECS--C---CCHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHhCCEEEEECCCh-----HHHHHHHHHHHH-----hcCCCCEEE-EeC--C---CCHHHHHHHHHHHHHcCCEEEe
Confidence 45555599999999962 456667766643 22 344332 222 1 1123455566666667888776
Q ss_pred CC
Q 031823 93 IG 94 (152)
Q Consensus 93 ~~ 94 (152)
.+
T Consensus 129 ~p 130 (296)
T 3qha_A 129 AP 130 (296)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 84
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=30.35 E-value=22 Score=25.41 Aligned_cols=38 Identities=5% Similarity=-0.020 Sum_probs=25.5
Q ss_pred hCCEEEEe-ccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 19 EADGILLG-FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 19 ~aD~iIlg-sP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
++|+||+- .+.... ..+.+..|+.+... ++|+++.+.+
T Consensus 63 ~~D~livpGG~~~~~-~~~~l~~~l~~~~~-------~gk~iaaiC~ 101 (206)
T 3f5d_A 63 NFNLLVMIGGDSWSN-DNKKLLHFVKTAFQ-------KNIPIAAICG 101 (206)
T ss_dssp CCSEEEECCBSCCCC-CCHHHHHHHHHHHH-------TTCCEEEETH
T ss_pred CCCEEEEcCCCChhh-cCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 68999883 332223 67788888887643 6777777665
No 85
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=30.05 E-value=96 Score=24.58 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCCHHHHhhCCEEEEeccccCCCchHHH-----HHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031823 11 TITPNELAEADGILLGFPTRFGMMAAQF-----KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~g~~~~~~-----k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~ 85 (152)
-+..+.+.+....|.-+|-++...-++. -.+..+. ...+.||.++++|.+ . .-..+...+..
T Consensus 74 ~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-----g~~l~gktvGIIGlG-~-------IG~~vA~~l~a 140 (381)
T 3oet_A 74 HVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-----GFSLRDRTIGIVGVG-N-------VGSRLQTRLEA 140 (381)
T ss_dssp TBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-----TCCGGGCEEEEECCS-H-------HHHHHHHHHHH
T ss_pred ccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-----CCccCCCEEEEEeEC-H-------HHHHHHHHHHH
Confidence 3446777788888999999876544332 2222222 247899999999863 2 12335556667
Q ss_pred cCcEEec
Q 031823 86 HGMIFVP 92 (152)
Q Consensus 86 ~g~~~v~ 92 (152)
.||.++.
T Consensus 141 ~G~~V~~ 147 (381)
T 3oet_A 141 LGIRTLL 147 (381)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 8999875
No 86
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=29.53 E-value=1.3e+02 Score=20.31 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=32.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+.++|++|+.-..-...-...+..++.++.. .....++|+.++++=
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK 139 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFANK 139 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEEC
Confidence 4567889999998776554445556667766542 123467888888874
No 87
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=29.23 E-value=17 Score=27.75 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=10.7
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 171 ~~~DGlIVsTPT 182 (278)
T 1z0s_A 171 IRCDGFIVATQI 182 (278)
T ss_dssp EEESEEEEEESG
T ss_pred EecCeEEEecCC
Confidence 469999999997
No 88
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=28.85 E-value=1.7e+02 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcC
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~ 47 (152)
+.+.+||.||++.|.+ .++.+++.+..
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~~ 121 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMKP 121 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHGG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHHH
Confidence 4567899999999984 57777777753
No 89
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=27.33 E-value=9.6 Score=27.66 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=25.4
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~ 63 (152)
.++.++|.|||.||. .++.|++++........+.+++++++|
T Consensus 33 ~~l~~~d~lifTS~n-------aV~~~~~~l~~~~~~~~l~~~~i~aVG 74 (229)
T 3p9z_A 33 LDPTPFNALIFTSKN-------AVFSLLETLKNSPKLKMLQNIPAYALS 74 (229)
T ss_dssp SCCTTCSEEEESCHH-------HHHHHHHHTTTCHHHHHHHTSCEEESS
T ss_pred CCcCcCCEEEEECHH-------HHHHHHHHHHhccchHHHcCCcEEEEC
Confidence 356789999999998 556777776421100123455555544
No 90
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=26.73 E-value=38 Score=23.57 Aligned_cols=41 Identities=10% Similarity=-0.206 Sum_probs=23.9
Q ss_pred HhhCCEEEEec--cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 17 LAEADGILLGF--PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 17 i~~aD~iIlgs--P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++|+||+-- ......-.+.+..|+.+... ++|+++.+.+
T Consensus 67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~-------~~k~iaaIC~ 109 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLD-------NQKIVAGIGS 109 (177)
T ss_dssp GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHH-------hCCEEEEecc
Confidence 35789999831 11122235677778777642 5666666643
No 91
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=26.68 E-value=2e+02 Score=21.47 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHh---hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031823 14 PNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~---~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++. ..|.+|+.+|. ......++.+.. .|.+..++.+.|-. +.....+.+.....|+.+
T Consensus 56 l~el~~~~~~Dv~Ii~vp~------~~~~~~~~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~a~~~gi~v 118 (288)
T 1oi7_A 56 VKEAVAHHEVDASIIFVPA------PAAADAALEAAH-------AGIPLIVLITEGIP----TLDMVRAVEEIKALGSRL 118 (288)
T ss_dssp HHHHHHHSCCSEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 55555 58999999885 344555555432 45565555554432 223456777777789988
Q ss_pred ecCC
Q 031823 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
++..
T Consensus 119 igPN 122 (288)
T 1oi7_A 119 IGGN 122 (288)
T ss_dssp EESS
T ss_pred EeCC
Confidence 8654
No 92
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=26.59 E-value=60 Score=24.97 Aligned_cols=61 Identities=11% Similarity=-0.000 Sum_probs=38.2
Q ss_pred eccccCC---CchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 26 GFPTRFG---MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 26 gsP~y~g---~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..|++|+ .-.-+.+.+.|-+.-....+.++|+.++.+|-. ....+..++...+..+|+++.
T Consensus 122 ~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~-----~~~rva~Sl~~~~~~~G~~v~ 185 (308)
T 1ml4_A 122 EVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDL-----KYGRTVHSLAEALTFYDVELY 185 (308)
T ss_dssp SSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCT-----TTCHHHHHHHHHGGGSCEEEE
T ss_pred CCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCC-----CcCchHHHHHHHHHHCCCEEE
Confidence 4688873 345566777776542222357889998887642 112456777777777888764
No 93
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Probab=26.09 E-value=1.8e+02 Score=20.82 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031823 55 AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 55 ~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
..+++.+|..+|++..+.......+...|...|+.++...+.
T Consensus 80 ~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 121 (303)
T 4e15_A 80 NQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYN 121 (303)
T ss_dssp TTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCC
T ss_pred CCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCC
Confidence 356788887765433333333334556667789988866554
No 94
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=24.82 E-value=35 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=23.1
Q ss_pred HhhCCEEEE-eccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 17 LAEADGILL-GFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 17 i~~aD~iIl-gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++|.||+ |.+...... +.+..|+.+... ++|+++.+.+
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~-------~g~~iaaIC~ 109 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAA-------HGMALGGLWN 109 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHH-------HTCEEEEETT
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHh-------hCCEEEEECH
Confidence 567999998 333222223 667777776542 4555555543
No 95
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=24.57 E-value=1.5e+02 Score=19.16 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=42.9
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
......-+..+|++|+....-...-...++.|+..+.. ...++|+.++++--.-..................++.
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 72 RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ 146 (181)
T ss_dssp SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe
Confidence 33445567889999998766555555556667776642 3457788887764211111111223344444455655
Q ss_pred Ee
Q 031823 90 FV 91 (152)
Q Consensus 90 ~v 91 (152)
++
T Consensus 147 ~~ 148 (181)
T 3tw8_B 147 LF 148 (181)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 96
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=24.08 E-value=1.7e+02 Score=23.73 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031823 52 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 52 ~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
..|.||++++++- . . . .-.+..+|..+||+++..+.
T Consensus 328 ~~l~GKrv~i~~~--~---~--~-~~~l~~~L~ElGmevv~~gt 363 (483)
T 3pdi_A 328 ARLEGKRVLLYTG--G---V--K-SWSVVSALQDLGMKVVATGT 363 (483)
T ss_dssp HHHTTCEEEEECS--S---S--C-HHHHHHHHHHHTCEEEEECB
T ss_pred HHhcCCEEEEECC--C---c--h-HHHHHHHHHHCCCEEEEEec
Confidence 3689999998752 1 1 1 33455677889999987543
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=23.91 E-value=1.6e+02 Score=19.40 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=31.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+.-..-...-...+..++.++.. .....++|+.++++=
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 132 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD---EDELRKSLLLIFANK 132 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHT---CSTTTTCEEEEEEEC
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh---hhhcCCCeEEEEEEC
Confidence 3446789999987766554444555666666532 124568888888874
No 98
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=23.62 E-value=1.5e+02 Score=18.94 Aligned_cols=48 Identities=13% Similarity=-0.033 Sum_probs=30.7
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+.-..-...-...+..++..+.. .....++|+.++++-
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 117 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE---EEELRKAILVVFANK 117 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhCCCEEEEEEEC
Confidence 345679999998766554444555666665532 123468888888874
No 99
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=23.45 E-value=21 Score=28.44 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 031823 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 227 ~~~DGliVsTPT 238 (388)
T 3afo_A 227 TTADGVALATPT 238 (388)
T ss_dssp EEEEEEEEECTG
T ss_pred ecCCeEEEeCCC
Confidence 469999999998
No 100
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=23.37 E-value=1.4e+02 Score=18.95 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=29.6
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
-+..+|++|+.-..-...-...+..++..+.. .....+.|+.++++=
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 110 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANK 110 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCeEEEEEEC
Confidence 46789999987665444334455566666532 123467888888874
No 101
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=22.79 E-value=2.1e+02 Score=23.51 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=41.2
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031823 19 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
....||++|+. .+.+...+..+...--. .-.+..+-..+|+++.+. |.+.....+.+.+...|.+++..
T Consensus 305 ~~~~vi~~tg~-~ge~~~~l~ria~~~h~---~~~~~~~~~vi~s~~~~~--G~~~~~~~~~~~l~~~g~~v~~~ 373 (562)
T 3bk2_A 305 DHQVLILATGS-QGQPMSVLHRLAFEGHA---KMAIKPGDTVILSSSPIP--GNEEAVNRVINRLYALGAYVLYP 373 (562)
T ss_dssp GGGEEEEECCT-TSCSHHHHHHHHTTCCS---SCCCCTTCEEEECSCCCT--TCHHHHHHHHHHHHHTTCEEECT
T ss_pred CCCEEEEEcCC-CchhHHHHHhhhhcccc---cccCCCCCEEEEECCCCC--CCeEehhhhcCceeeCCCEEEEc
Confidence 44679999987 45544444433221000 123455667888887664 44444566777778889988753
No 102
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=22.73 E-value=1.8e+02 Score=19.65 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=39.3
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.-+..+|++|+....-...-...++.|++.+... ....++++.++++=-.-..................++.++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~---~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 3467899999977665444444556666665421 2236788888877421101111123344444445565444
No 103
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=22.72 E-value=58 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=29.8
Q ss_pred CCCHHHHhhCCEEE---Eecccc-CCCchHHHHHHHHHhcC
Q 031823 11 TITPNELAEADGIL---LGFPTR-FGMMAAQFKAFLDATGG 47 (152)
Q Consensus 11 ~~~~~~i~~aD~iI---lgsP~y-~g~~~~~~k~fld~l~~ 47 (152)
-++-+++..||.++ -+.|.| .-++...+.-.+||+..
T Consensus 145 GLtneel~~cd~~l~~Ip~~~eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 145 GLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp CCCHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHhcCEEEccCCCCCCCCccCHHHHHHHHHHHHcC
Confidence 45578899999887 577788 47889999999999864
No 104
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.13 E-value=67 Score=21.68 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=24.1
Q ss_pred hhCCEEEEecc----cc-CCC---chHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 18 AEADGILLGFP----TR-FGM---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgsP----~y-~g~---~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++|+||+-.- .. ... ..+.+..|+.+... ++|+++.+.+
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~-------~gk~i~aiC~ 112 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGE-------KGKMMIGHCA 112 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHH-------CCCEEEEECH
Confidence 78999998543 11 112 35667777777642 5666666554
No 105
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=22.02 E-value=76 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=18.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHh
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDAT 45 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l 45 (152)
.+.+.++|.||+++|. ..+..++..+
T Consensus 76 ~~~~~~aDvVilavp~------~~~~~v~~~l 101 (220)
T 4huj_A 76 LKDALQADVVILAVPY------DSIADIVTQV 101 (220)
T ss_dssp HHHHTTSSEEEEESCG------GGHHHHHTTC
T ss_pred HHHHhcCCEEEEeCCh------HHHHHHHHHh
Confidence 5668899999999994 3455555554
No 106
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.92 E-value=1.5e+02 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=22.5
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHHhc
Q 031823 19 EADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~fld~l~ 46 (152)
-+|++++.+|-|+.--...+..++..+.
T Consensus 110 Gadavlv~~P~y~~~s~~~l~~~f~~va 137 (304)
T 3l21_A 110 GAHGLLVVTPYYSKPPQRGLQAHFTAVA 137 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999998766667777777764
No 107
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=21.73 E-value=2.9e+02 Score=21.55 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHhhCCEEEEeccccCCCc-hHHHHHHHHHhc
Q 031823 14 PNELAEADGILLGFPTRFGMM-AAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~-~~~~k~fld~l~ 46 (152)
.+-++++|.+|+=+|- |.+ ..-.|+|++.+.
T Consensus 136 ~EAvk~AEi~IlftPf--G~~t~~Iakkii~~lp 167 (358)
T 2b0j_A 136 REAVEGADIVITWLPK--GNKQPDIIKKFADAIP 167 (358)
T ss_dssp HHHHTTCSEEEECCTT--CTTHHHHHHHHGGGSC
T ss_pred HHHhcCCCEEEEecCC--CCCcHHHHHHHHhhCc
Confidence 6778899999999995 664 666799999874
No 108
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=21.63 E-value=1.8e+02 Score=19.22 Aligned_cols=74 Identities=7% Similarity=-0.051 Sum_probs=40.3
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.-+..+|++|+.--.-...-...++.|++.+.. ....+.++.++++--.-..................++.++.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKT----YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFE 164 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 346789999997655443334555666666643 13357788888774221111112233344444556766553
No 109
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=21.62 E-value=1.6e+02 Score=19.46 Aligned_cols=48 Identities=15% Similarity=-0.007 Sum_probs=30.2
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+.-..-...-...++.++..+.. .....++++.++++=
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 133 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLD---KPQLQGIPVLVLGNK 133 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCCEEEEEEC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHh---CcccCCCCEEEEEEC
Confidence 346789999998766544444555566665532 123467888888874
No 110
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=21.52 E-value=1.3e+02 Score=20.19 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=30.4
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
......-+..+|++|+..-.-...-...++.+++.+... ...++++.++++
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~n 146 (199)
T 3l0i_B 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGN 146 (199)
T ss_dssp CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-C
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEE
Confidence 333345677899999987766655556677777777532 224677777765
No 111
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=21.43 E-value=54 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCCHHHHhhCCEEEEeccccCCCchHHH
Q 031823 10 PTITPNELAEADGILLGFPTRFGMMAAQF 38 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~ 38 (152)
+++ ++.|.+||.||+|--.++-++-|.+
T Consensus 176 p~a-l~AI~~AD~IvlgPGSl~TSI~P~L 203 (326)
T 2q7x_A 176 RRV-VQTILESDMIVLGPGSLFTSILPNI 203 (326)
T ss_dssp SHH-HHHHHHCSEEEECSSCCCCCCHHHH
T ss_pred HHH-HHHHHhCCEEEECCCCCHHHHhhhh
Confidence 445 8899999999999999999986543
No 112
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=21.23 E-value=68 Score=20.93 Aligned_cols=51 Identities=14% Similarity=-0.046 Sum_probs=29.7
Q ss_pred HHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+.--.-...-...++.|++.+..........+.|+.++++-
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 345678999987655444334455666665542211123367788888874
No 113
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=21.16 E-value=2.6e+02 Score=20.88 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=41.3
Q ss_pred CEEEEeccccCCCchHHHHHH-----------------------HHHhcCccccCCCCCCeEEEEEecCCCCCC----Cc
Q 031823 21 DGILLGFPTRFGMMAAQFKAF-----------------------LDATGGLWRSQQLAGKPAGIFYSTGSQGGG----QE 73 (152)
Q Consensus 21 D~iIlgsP~y~g~~~~~~k~f-----------------------ld~l~~~~~~~~l~gK~~~~~~s~G~~~gg----~~ 73 (152)
|.||+-+|+|.+.....+..- +|.+ ...+..++.+++.+-.+..|+ ..
T Consensus 129 ~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~l~~~~~~v~~~p~np~g~~~~~~~ 203 (406)
T 4adb_A 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSA-----SALIDDSTCAVIVEPIQGEGGVVPASN 203 (406)
T ss_dssp CEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHH-----HTTCSTTEEEEEECSEETTTTSEECCH
T ss_pred cEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHH-----HHHhcCCeEEEEEeCCcCCCCCccCCH
Confidence 889999999998865543311 1111 123456777777764343344 23
Q ss_pred chHHHHHHHHHHcCcEEecC
Q 031823 74 TTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 74 ~~~~~~~~~l~~~g~~~v~~ 93 (152)
..++.+.+.+..+|..++-.
T Consensus 204 ~~l~~l~~l~~~~~~~li~D 223 (406)
T 4adb_A 204 AFLQGLRELCNRHNALLIFD 223 (406)
T ss_dssp HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 35777877777788776643
No 114
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=21.14 E-value=1.4e+02 Score=19.72 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=42.4
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..-+..+|++|+....-...-...++.+++.+... ....+++..++++--.- .................++.++
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY---CTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC---CSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEE
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCcEEEEEECCcC-cccccCHHHHHHHHHHcCCEEE
Confidence 55678899999977665444445566777776531 12357788787764221 1112223444555555666554
No 115
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=21.12 E-value=1.7e+02 Score=19.06 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=38.1
Q ss_pred HHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
-+..+|++|+..-.-...-...++.+++.+... ....++++.++++--.-........+.+.......++.++
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH---AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---SSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 356799999876654444444456666665421 1235778888877422111111123444444444565444
No 116
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=20.63 E-value=1.7e+02 Score=19.69 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+.--.....-...++.++..+... ....++|+.++++=
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK 135 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNK 135 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEEEC
Confidence 34567899999987766555455666777766421 23467888888874
No 117
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=20.56 E-value=1.5e+02 Score=22.84 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=51.3
Q ss_pred CCCCCHHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccc-----cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHH
Q 031823 9 VPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-----SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL 83 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~-----~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l 83 (152)
.++..++...+.+.-|+.|+.-.......+..|++.-...+. .....|+-+.+.|.+|. |... +...|
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~---GKSt----~a~~l 164 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGI---GKSE----TALEL 164 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTS---SHHH----HHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCC---CHHH----HHHHH
Confidence 344447788888999999998888889999999987543221 12446776767666543 2211 33344
Q ss_pred HHcCcEEecCC
Q 031823 84 VHHGMIFVPIG 94 (152)
Q Consensus 84 ~~~g~~~v~~~ 94 (152)
...|..+|...
T Consensus 165 ~~~g~~lv~dD 175 (314)
T 1ko7_A 165 IKRGHRLVADD 175 (314)
T ss_dssp HHTTCEEEESS
T ss_pred HhcCCceecCC
Confidence 55688887643
No 118
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=20.54 E-value=2e+02 Score=19.13 Aligned_cols=74 Identities=11% Similarity=-0.038 Sum_probs=43.5
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..-+..+|++|+....-...-...++.+++.+... ...++++.++++--.-........+...+.+...++.++
T Consensus 90 ~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 90 PMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp HHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred HHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 55678899999987766555556667777776431 235778888877421111111224455555555666554
No 119
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=20.53 E-value=1.5e+02 Score=21.37 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=22.2
Q ss_pred CCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 53 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 53 ~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
+|+||++.+-|.+|.+ | .-..+...|...|..++-
T Consensus 3 ~l~gK~alVTGaa~~~--G---IG~aiA~~la~~Ga~Vvi 37 (256)
T 4fs3_A 3 NLENKTYVIMGIANKR--S---IAFGVAKVLDQLGAKLVF 37 (256)
T ss_dssp CCTTCEEEEECCCSTT--C---HHHHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEEECCCCCc--h---HHHHHHHHHHHCCCEEEE
Confidence 6899998776654322 2 123455666778988774
No 120
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=20.37 E-value=1.9e+02 Score=18.93 Aligned_cols=49 Identities=8% Similarity=-0.059 Sum_probs=32.1
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+..-.-...-...++.++..+.. .....++++.++++-
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 131 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLA---HEDLRKAGLLIFANK 131 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---ChhhCCCeEEEEEEC
Confidence 4456789999998776555445556666666542 112477888888874
No 121
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=20.33 E-value=42 Score=24.65 Aligned_cols=40 Identities=5% Similarity=-0.125 Sum_probs=24.3
Q ss_pred hhCCEEEEec--c-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031823 18 AEADGILLGF--P-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgs--P-~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++|+||+-. + .+...-.+.+..|+.++.. ++|+++.+.+
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~-------~gk~iaaIC~ 139 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYA-------NGGVIAAICH 139 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 4689998843 2 1323446777788877642 5666666554
No 122
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=20.07 E-value=1.8e+02 Score=18.61 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~G~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..-+..+|++|+....-...-...++.|++.+... .-.++++.++++--.-........+...+.+...++.++.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 34577899999977665544445556666665421 2246788888774221111112234555555566765543
No 123
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.04 E-value=1.9e+02 Score=18.76 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=32.9
Q ss_pred HHHHhhCCEEEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031823 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+....-...-...+..++..+.. .....++|+.++++=
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 128 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ---EEELQDAALLVFANK 128 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTT---SSTTSSCEEEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHc---ChhhCCCeEEEEEEC
Confidence 4456789999998776555445566677777643 123578888888874
Done!