BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031824
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 308 bits (789), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 145/152 (95%), Positives = 152/152 (100%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
MSTPARKRLMRDFKRLQQDPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 152
PANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 253 bits (647), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 113/149 (75%), Positives = 137/149 (91%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNS
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNS 120
Query: 121 PANSEAARMFSENKREYNRRVREIVEQSW 149
PANS+AA+++ ENKREY +RV IVEQSW
Sbjct: 121 PANSQAAQLYQENKREYEKRVSAIVEQSW 149
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 139/149 (93%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M+TP+R+RLMRDFK+LQ+DPPAG+SGAP +++I+ W A+IFGP +TP++ GTFKL+L+FT
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
E+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNS
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 123
Query: 121 PANSEAARMFSENKREYNRRVREIVEQSW 149
PANS AA+++ EN+REY +RV++IVEQSW
Sbjct: 124 PANSLAAQLYQENRREYEKRVQQIVEQSW 152
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 139/149 (93%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M+TP+R+RLMRDFK+LQ+DPPAG+SGAP +++I+ W A+IFGP +TP++ GTFKL+L+FT
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
E+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNS
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 121 PANSEAARMFSENKREYNRRVREIVEQSW 149
PANS AA+++ EN+REY +RV++IVEQSW
Sbjct: 121 PANSLAAQLYQENRREYEKRVQQIVEQSW 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 126/149 (84%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
MSTPAR+RLMRDFKR+++D P G+S +P +++M+WNA+I GP DTP++ GTF+L L+F
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQSL DPNP S
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPAS 120
Query: 121 PANSEAARMFSENKREYNRRVREIVEQSW 149
PAN EAA +F ++K +Y +RV+E VE+SW
Sbjct: 121 PANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 98/147 (66%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M + A KR+ ++ + LQ+DPPA S P + + W A I GP D+P+ GG F LT+ F
Sbjct: 3 MGSMALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFP 62
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
DYP KPP V F ++++HPNI ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+
Sbjct: 63 TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 122
Query: 121 PANSEAARMFSENKREYNRRVREIVEQ 147
P + A ++ +K +YNR RE ++
Sbjct: 123 PLVPDIAHIYKSDKEKYNRLAREWTQK 149
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 98/147 (66%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M + A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F
Sbjct: 3 MGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 62
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 63 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 122
Query: 121 PANSEAARMFSENKREYNRRVREIVEQ 147
P E AR++ ++ +YNR RE ++
Sbjct: 123 PLVPEIARIYKTDREKYNRIAREWTQK 149
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 99/147 (67%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M++ A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F
Sbjct: 8 MNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 121 PANSEAARMFSENKREYNRRVREIVEQ 147
P E AR++ ++ +YNR RE ++
Sbjct: 128 PLVPEIARIYQTDREKYNRIAREWTQK 154
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 124 EIARIYKTDREKYNRIAREWTQK 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 124 EIARIYKTDREKYNRIAREWTQK 146
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 139
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 140 EIARIYKTDREKYNRIAREWTQK 162
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 122 EIARIYKTDREKYNRIAREWTQK 144
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 152 bits (384), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 99/147 (67%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M++ A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F
Sbjct: 8 MNSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
DYP KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+
Sbjct: 68 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 121 PANSEAARMFSENKREYNRRVREIVEQ 147
P E AR++ ++ +YNR RE ++
Sbjct: 128 PLVPEIARIYKTDRDKYNRISREWTQK 154
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QW P ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 124 EIARIYKTDREKYNRIAREWTQK 146
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 124 EIARIYKTDRDKYNRISREWTQK 146
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 120
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 121 EIARIYKTDRDKYNRISREWTQK 143
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLD L++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 124 EIARIYKTDREKYNRIAREWTQK 146
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 124 EIARIYKTDREKYNRIAREWTQK 146
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 96/143 (67%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 70 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 129
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 130 EIARIYKTDRDKYNRISREWTQK 152
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA S P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+ P
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 127
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
+ A+++ +K +YNR RE ++
Sbjct: 128 DIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA S P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 20 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+ P
Sbjct: 80 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 139
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
+ A+++ +K +YNR RE ++
Sbjct: 140 DIAQIYKSDKEKYNRHAREWTQK 162
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA S P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP + F ++++HPNI ++GSICLDIL++QWSP V+ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
+ A+++ +K +YNR RE ++
Sbjct: 124 DIAQIYKSDKEKYNRHAREWTQK 146
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 93/139 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 123
Query: 125 EAARMFSENKREYNRRVRE 143
E AR++ ++ +YNR RE
Sbjct: 124 EIARIYKTDREKYNRIARE 142
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 149 bits (376), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVP 120
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 121 EIARIYKTDREKYNRIAREWTQK 143
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 149 bits (376), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ + L +DPPA S P + + W A I GP ++P+ GG F LT+ F DYP
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 124
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ YN+ RE ++
Sbjct: 125 EIARIYKTDRERYNQLAREWTQK 147
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 149 bits (375), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 5 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 124
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 125 EIARIYKTDREKYNRIAREWTQK 147
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 139
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 140 EIARIYKTDREKYNRIAREWTQK 162
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA S P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 122 EIARIYKTDRDKYNRISREWTQK 144
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 93/143 (65%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPPA P + + W A I GP+D+P+ GG F LT+ F DYP
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HP I ++GSI LDIL++QWSP ++ +L SI SLLCDPNP+ P
Sbjct: 62 FKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP 121
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
E AR++ ++ +YNR RE ++
Sbjct: 122 EIARIYKTDREKYNRIAREWTQK 144
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 93/143 (65%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ LQ+DPPA P + + W A I GP D+ + GG F LT+ F DYP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP + F ++++HPNI ++GSI LDIL++QWSP V+ +L SI SLLCDPNP+ P
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 127
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
+ A+++ +K +YNR RE ++
Sbjct: 128 DIAQIYKSDKEKYNRHAREWTQK 150
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 88/139 (63%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ R+ L +DPP+ S P + + W A I GP D+P+ GG F L++ F DYP
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F +R++HPNI ++GSICLDIL++QWSP ++ +L SI SLL DPNP+ P
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVP 121
Query: 125 EAARMFSENKREYNRRVRE 143
E A ++ ++ Y RE
Sbjct: 122 EIAHVYKTDRSRYELSARE 140
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 88/139 (63%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A KR+ ++ L +DPP S P + + W A I GP+D+P+ GG F L + F DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP V F ++++HPNI + G+ICLDIL++QWSP ++ +L SI SLL DPNP+ P
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVP 141
Query: 125 EAARMFSENKREYNRRVRE 143
E A ++ ++ Y++ RE
Sbjct: 142 EIAHLYKSDRMRYDQTARE 160
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 89/139 (64%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A +R+ ++ + +QQDPP S P + I W A I GPDD+P+ GG F L + F DYP
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
K P V F+++++HPNI +G ICLDIL++QWSP ++ +L SI SLL DPNP+ P +
Sbjct: 65 FKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP 124
Query: 125 EAARMFSENKREYNRRVRE 143
E A + NK+++ RE
Sbjct: 125 EVANVLRANKKQFEDTARE 143
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 88/139 (63%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
+ KR+ ++ L++DPP S P + + W A I GP D+P+ GG F L++ F DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP + F ++++HPNI A+G+ICLDIL++QWSP ++ +L SI SLL D NP+ P
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVP 122
Query: 125 EAARMFSENKREYNRRVRE 143
E A ++ ++ +Y RE
Sbjct: 123 EIAHIYKTDRPKYEATARE 141
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
M+ A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 63
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAIL 106
DYP PP +RF MFHPNIY DG +C+ IL +WSP+ V IL
Sbjct: 64 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL 123
Query: 107 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148
S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 124 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 165
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
M+ A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 62
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAIL 106
DYP PP +RF MFHPNIY DG +C+ IL +WSP+ V IL
Sbjct: 63 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL 122
Query: 107 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148
S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 123 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 164
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 14/162 (8%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
M+ A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 65
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAIL 106
DYP PP +RF MFHPNIY DG +C+ IL +WSP+ V IL
Sbjct: 66 PLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKIL 125
Query: 107 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148
S+ S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 126 LSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 167
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 87/137 (63%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R+ ++ + L +PP GI P + +N +I GPD TP++GGT+KL L E YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
PP VRF+++++HPNI G ICLDIL+++WSP + +L SIQ+LL P P+ P +S+
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 127 ARMFSENKREYNRRVRE 143
A F ++K + R+
Sbjct: 124 AEHFKQDKNDAEHVARQ 140
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 87/137 (63%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R+ ++ + L +PP GI P + +N +I GPD TP++GGT+KL L E YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
PP VRF+++++HPNI G ICLDIL+++WSP + +L SIQ+LL P P+ P +S+
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 127 ARMFSENKREYNRRVRE 143
A F ++K + R+
Sbjct: 124 AEHFKQDKNDAEHVARQ 140
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 125 bits (314), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 14/158 (8%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A KRLM ++K+L +PP GI P + + W A+I GP+DT ++ G F L F DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110
P PP +RF MFHPNIY DG +C+ IL +WSP+ V IL S+
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123
Query: 111 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148
S+L +PN S AN +A++M+ +++ ++ + ++IV++S
Sbjct: 124 SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN SPA +EA ++ +N+ EY +RVR
Sbjct: 124 NEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 14/162 (8%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQF 59
MS A+KRL+++ ++L +D P GI P+ +N+I +W+ +I GP DTP+ G F L+F
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAIL 106
+DYP PP + F + HPNIY +G +C+ IL + +WSP+ V IL
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 120
Query: 107 TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148
S+ S+L +PN S AN +A ++ +N+ E+ R+V+ + +S
Sbjct: 121 LSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS 162
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KRL ++ + L GI+ P +++ W A + GP DT ++ +KLTL+F DYP K
Sbjct: 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
PP V+F + +HPN+ G+ICLDIL+ W+ YDV IL S+QSLL +PN SP N++A
Sbjct: 72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQA 131
Query: 127 ARMFSENKREYNRRVRE 143
A M+S N+ EY + + E
Sbjct: 132 ADMWS-NQTEYKKVLHE 147
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNS-----IMLWNAVIFGPDDTPWDGGTFKLT 56
S+ + RL + K+ ++D P G P +S +M W I G T W+GG +KLT
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 57 LQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLC 114
+ F E+YP +PP RF +FHPN+Y G++CL IL + W P + IL IQ LL
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 115 DPNPNSPANSEAARMFSENKREYNRRVR 142
DPN SPA +EA MF ++K EY +RVR
Sbjct: 128 DPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN +PA +EA ++ +N+ EY +RVR
Sbjct: 124 NEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 124 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 123 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 2 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 62 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 121
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 122 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 123 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 121 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 6 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++CL IL+ W P + IL IQ LL
Sbjct: 66 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 125
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 126 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127
Query: 127 ARMFSENKREYNRRVREIVEQSWT 150
A + N+ + R +WT
Sbjct: 128 AEQWKTNEAQAIETAR-----AWT 146
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 87/137 (63%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ+LL PNPN P ++
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125
Query: 127 ARMFSENKREYNRRVRE 143
A + +N++ + RE
Sbjct: 126 AEDWIKNEQGAKAKARE 142
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 87/137 (63%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPNI G ICLD+L+ WSP + +L SIQ+LL PNPN P ++
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 127
Query: 127 ARMFSENKREYNRRVRE 143
A + +N++ + RE
Sbjct: 128 AEDWIKNEQGAKAKARE 144
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 128
Query: 127 ARMFSENKREYNRRVREIVEQSWT 150
A + N+ + R +WT
Sbjct: 129 AEQWKTNEAQAIETAR-----AWT 147
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 130
Query: 127 ARMFSENKREYNRRVREIVEQSWT 150
A + N+ + R +WT
Sbjct: 131 AEQWKTNEAQAIETAR-----AWT 149
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
Query: 127 ARMFSENKREYNRRVREIVEQSWT 150
A + N+ + R +WT
Sbjct: 126 AEQWKTNEAQAIETAR-----AWT 144
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 119 bits (299), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 5/144 (3%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+R++++ +RL +P GI P +++ ++ VI GP D+P++GGTFKL L E+YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P ++
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 123
Query: 127 ARMFSENKREYNRRVREIVEQSWT 150
A + N+ + R +WT
Sbjct: 124 AEQWKTNEAQAIETAR-----AWT 142
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHP +Y G++CL IL+ W P + IL IQ LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 124 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 81/137 (59%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR+ ++ + DPP S P+ ++I W + I GP + ++GG F L + F+ DYP K
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
PP V F +R++H NI + G ICLDIL++ WSP ++ +L SI SLL D NP P
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 125
Query: 127 ARMFSENKREYNRRVRE 143
A + N+ E++R R+
Sbjct: 126 ATQYMTNRAEHDRMARQ 142
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
+ST A KR+ ++ + DPP S P+ ++I W + I GP + ++GG F L + FT
Sbjct: 46 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
+YP KPP V F +R++H NI + G ICLDIL++ WSP ++ +L SI SLL D NP
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 164
Query: 121 PANSEAARMFSENKREYNRRVRE 143
P A + N+ E++R R+
Sbjct: 165 PLVGSIATQYMTNRAEHDRMARQ 187
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 17/156 (10%)
Query: 7 KRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
K+ + D +R+ P G S G DN I W ++ GP DT ++GG FK L F DYP
Sbjct: 9 KKQLADMRRV---PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 65
Query: 66 KPPTVRFVSRMFHPNIYADGSICLDILQN-------------QWSPIYDVAAILTSIQSL 112
KPP ++F+S ++HPNI +G++C+ IL + +W P++ V IL S+ S+
Sbjct: 66 KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISM 125
Query: 113 LCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148
L DPN SPAN +AA+M EN E+ ++V + V +S
Sbjct: 126 LTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 8 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
RL ++ K ++ + I +D++ W I GP+ TP++GG F L + DYP P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 68 PTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P ++FV++++HPNI + G+ICLD+L+N+WSP + L SIQ+LL DP P+ P ++E
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 127 ARMFSEN 133
A+M+ EN
Sbjct: 147 AKMYKEN 153
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+ G++CL IL+ W P + IL IQ LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 124 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++ L IL+ W P + IL IQ LL
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 121 NEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 86/137 (62%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HPNI G I LD+L+ WSP + +L SIQ+LL PNPN P ++
Sbjct: 66 APKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125
Query: 127 ARMFSENKREYNRRVRE 143
A + +N++ + RE
Sbjct: 126 AEDWIKNEQGAKAKARE 142
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKL 55
MS A RL ++ K ++D P G P N ++M W I G TPW+GG FKL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
+ F +DYP+ PP +F +FHPN+Y G++ L IL+ W P + IL IQ LL
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRVR 142
+PN PA +EA ++ +N+ EY +RVR
Sbjct: 121 NEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 79/140 (56%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
+ + ++ L DPP GI P + + I GP+ TP+ GG F++ L +D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
PP F++++FHPN+ A+G IC+++L+ W+ + +L +I+ LL PNP S N EA
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 127 ARMFSENKREYNRRVREIVE 146
R+ EN EY R R + E
Sbjct: 136 GRLLLENYEEYAARARLLTE 155
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP---QDNSIML--WNAVIFGPDDTPWDGGTFKL 55
MS+ +RL + K+ ++D P G P D S+ L W A I G + T W GG + +
Sbjct: 3 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+ +Q LL
Sbjct: 63 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 122
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRV 141
PNPNSPA A R FS NK EY+++V
Sbjct: 123 DSPNPNSPAQEPAWRSFSRNKAEYDKKV 150
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAP---QDNSIML--WNAVIFGPDDTPWDGGTFKL 55
MS+ +RL + K+ ++D P G P D S+ L W A I G + T W GG + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLL 113
T+++ +YP+KPP V+F + +HPN+Y G+ICL IL W P + I+ +Q LL
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
Query: 114 CDPNPNSPANSEAARMFSENKREYNRRV 141
PNPNSPA A R FS NK EY+++V
Sbjct: 121 DSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 85/137 (62%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
KR++++ ++L DP GI+ P D+++ + I GP+ +P++ G F+L L +DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
P VRF+++++HP I G I LD+L+ WSP + +L SIQ+LL PNPN P ++
Sbjct: 66 APKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125
Query: 127 ARMFSENKREYNRRVRE 143
A + +N++ + RE
Sbjct: 126 AEDWIKNEQGAKAKARE 142
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
P KRL ++ L GIS P+ +++ W I G T ++ +KL+L+F Y
Sbjct: 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 123
P PTV+F++ +HPN+ G+I LDIL+ +WS +YDV IL SIQSLL +PN +SP N
Sbjct: 90 PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLN 149
Query: 124 SEAARMFSENKREYNRRVREIVEQSWTA 151
+ AA ++ +N + + ++E + T+
Sbjct: 150 THAAELW-KNPTAFKKYLQETYSKQVTS 176
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 15/148 (10%)
Query: 9 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
L R L ++P G S G DN + W +I GP DT ++GG FK L F +DYP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 68 PTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLC 114
P ++F++ ++HPN+ +G +C+ IL + +W PI+ V I+ S+ S+L
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
Query: 115 DPNPNSPANSEAARMFSENKR-EYNRRV 141
DPN +SPAN +AA+ + E++ E+ R+V
Sbjct: 142 DPNGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 21/166 (12%)
Query: 1 MSTPA-RKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQ 58
M +P+ +K L+ + K LQ++P G D + W IFGP +T ++GG FK L+
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 59 FTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAI 105
F DYP PP RF+++M+HPNIY G +C+ IL +W+P +V I
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 106 LTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 145
L S+ SLL +PN SPAN +A+ M+ + K REY +R+ V
Sbjct: 123 LLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 168
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 7 KRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
KR+M++ + ++ DP A I+ ++ I GP TP++GG F + ++ +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 66 KPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP ++F ++++HPNI + G+ICLDIL+N WSP+ + + L S+Q+LL P PN P ++
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 125 EAARMFSENKREYNR 139
E A+ + ++ +N+
Sbjct: 124 EVAQHYLRDRESFNK 138
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 20/164 (12%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFT 60
S ++K L+ + K LQ++P G D + W IFGP +T ++GG FK L+F
Sbjct: 2 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFP 61
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILT 107
DYP PP RF+++M+HPNIY G +C+ IL +W+P +V IL
Sbjct: 62 IDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 121
Query: 108 SIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 145
S+ SLL +PN SPAN +A+ M+ + K REY +R+ V
Sbjct: 122 SVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 165
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 7 KRLMRDFKRLQQDPPAGISGA-PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
KR+M++ + ++ DP A I+ ++ I GP TP++GG F + ++ +YP
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 66 KPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP ++F ++++HPNI + G+ICLDIL+N WSP+ + + L S+Q+LL P PN P ++
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124
Query: 125 EAARMFSENKREYNR 139
E A+ + ++ +N+
Sbjct: 125 EVAQHYLRDRESFNK 139
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
Query: 6 RKRLMRDFKRLQQ-------DPPA------GISGAPQDNSIMLWNAVIFGPDDTPWDGGT 52
+ RL+++ +QQ +P A G+S I W I GP TP++GG
Sbjct: 34 QARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGH 93
Query: 53 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQS 111
F L + DYP PP ++FV++++HPNI + G+ICLDIL+++WSP + L SIQ+
Sbjct: 94 FTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQA 153
Query: 112 LLCDPNPNSPANSEAARMFSENK 134
+L DP P P ++E A+M EN
Sbjct: 154 MLADPVPTDPQDAEVAKMMIENH 176
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 8 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKP 67
RL R+ L +PP GI+ + + A I G +TP++ G FKL + E YP +P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 68 PTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 123
P +RF++ ++HPNI + G ICLD+L + W P ++A +LTSIQ L+ +PNP+ P
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 124 SEAARMFSENKREYNRRVREIVEQ 147
++ + F NK + + R+ E+
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEK 151
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 3 TPARKRLMRDFKRLQQDPPAGI----SGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQ 58
+ AR RL RD L P + S D S VI PD+ ++ G+ L
Sbjct: 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLD 87
Query: 59 FTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNP 118
F E YP +PP V + ++FHPNI G++CL+IL+ WSP D+ +I+T + L +PNP
Sbjct: 88 FNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNP 147
Query: 119 NSPANSEAARMFSENKREYNRRVR 142
N P N +AA++ E ++E+ VR
Sbjct: 148 NDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 8/153 (5%)
Query: 3 TPARKRLMRD-FKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61
+P ++R+ D K ++ I G + + +GP TP++GG +K+ + +
Sbjct: 24 SPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKF-----YGPQGTPYEGGVWKVRVDLPD 78
Query: 62 DYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPN 119
YP K P++ F++++FHPNI A G++CLD++ W+ +YD+ I S + LL PNP
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 138
Query: 120 SPANSEAARMFSENKREYNRRVREIVEQSWTAD 152
P N +AA M+ EY ++++E +++ T +
Sbjct: 139 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
M A L RDF L+++ GI+ P +M W I G ++ W G F+LT+ FT
Sbjct: 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFT 79
Query: 61 EDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPN 117
+Y PP V+F++ FHPN+ G C+D L N +W+ Y +++IL ++Q +L +P
Sbjct: 80 SEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPV 139
Query: 118 PNSPANSEAARMFSENKREYNRRVR 142
+P N EAAR+ +++ Y +R
Sbjct: 140 LENPVNLEAARILVKDESLYRTILR 164
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61
++ A+ R+ +D L IS + D+ +L ++ PD+ + G F + + +
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQ 61
Query: 62 DYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121
YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q L +PNP P
Sbjct: 62 GYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 121
Query: 122 ANSEAARMFSENKREYNRRVR 142
N EAA + N+R + + V+
Sbjct: 122 LNKEAAEVLQNNRRLFEQNVQ 142
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 77/130 (59%), Gaps = 7/130 (5%)
Query: 25 SGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YA 83
+G+ QD +M GP+ T ++GG +K+ + +DYP P++ F++++ HPN+ A
Sbjct: 25 NGSTQDFDVMF-----HGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79
Query: 84 DGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 142
GS+CLD++ W+P+Y + + + LL PNP+ P NS+AA + ++K Y +V+
Sbjct: 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVK 139
Query: 143 EIVEQSWTAD 152
E V+ + D
Sbjct: 140 EYVKLYASKD 149
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTE 61
++ A+ R+ +D L IS + D+ +L ++ PD+ + G F + + +
Sbjct: 24 ASAAQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQ 81
Query: 62 DYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121
YP+ PP V+ + ++HPNI +G++ L+IL+ W P+ + +I+ +Q L +PNP P
Sbjct: 82 GYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDP 141
Query: 122 ANSEAARMFSENKREYNRRVREIVEQSWTA 151
N EAA + N+R + + V+ + +
Sbjct: 142 LNKEAAEVLQNNRRLFEQNVQRSMRGGYIG 171
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFT 60
S A +RLM++ + +++ D + +L W +I PD+ P+D G F++ + F
Sbjct: 2 SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFP 60
Query: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPN 119
+YP KPP + F ++++HPNI G +CL ++ + W P ++ S+ +L+ DP P
Sbjct: 61 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 120
Query: 120 SPANSEAARMFSENKREYNRRVREIVEQ 147
P ++ A +S++++++ + E ++
Sbjct: 121 HPLRADLAEEYSKDRKKFCKNAEEFTKK 148
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 80/143 (55%), Gaps = 12/143 (8%)
Query: 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN 65
RK M++F+ +Q D + +++ W +I PD+ P+D G F++ + F +YP
Sbjct: 15 RKCGMKNFRNIQVD----------EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPF 63
Query: 66 KPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANS 124
KPP + F ++++HPNI G +CL ++ + W P ++ S+ +L+ DP P P +
Sbjct: 64 KPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA 123
Query: 125 EAARMFSENKREYNRRVREIVEQ 147
+ A +S++++++ + E ++
Sbjct: 124 DLAEEYSKDRKKFCKNAEEFTKK 146
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A R++++ + LQ+ PP + D++ +++W+A++ PD P+ F L + F +Y
Sbjct: 2 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEY 60
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPA 122
P KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++ L+ PN P
Sbjct: 61 PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPL 120
Query: 123 NSEAARMFSENKREYNRRVREI 144
+ A + ++N + + E
Sbjct: 121 RMDLADLLTQNPELFRKNAEEF 142
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
A R++++ + LQ+ PP + D++ +++W+A++ PD P+ F L + F +Y
Sbjct: 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEY 63
Query: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPA 122
P KPP ++F ++++HPN+ +G ICL I+ ++ W P +L ++ L+ PN P
Sbjct: 64 PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPL 123
Query: 123 NSEAARMFSENKREYNRRVREI 144
+ A + ++N + + E
Sbjct: 124 RMDLADLLTQNPELFRKNAEEF 145
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 28 PQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGS 86
P D W GP+ TP++ GT+ L +Q DYP K P++ F +R+ HPN+ GS
Sbjct: 33 PSDTVAEFW-VEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91
Query: 87 ICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 145
+CLD++ W+P+Y + I + LL PNP+ P N +AA + ++ ++ +RE V
Sbjct: 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHV 151
Query: 146 EQSWT 150
T
Sbjct: 152 STHAT 156
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 3 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 62
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S+Q+LL
Sbjct: 63 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 122
Query: 117 NPNSPANSEAARMFSENKREYNRRVR 142
P+ P ++ A + +N + + R
Sbjct: 123 EPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S+Q+LL
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 121
Query: 117 NPNSPANSEAARMFSENKREYNRRVR 142
P+ P ++ A + +N + + R
Sbjct: 122 EPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S+Q+LL
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 173
Query: 117 NPNSPANSEAARMFSENKREYNRRVR 142
P+ P ++ A + +N + + R
Sbjct: 174 EPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 18 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 77
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S+Q+LL
Sbjct: 78 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 137
Query: 117 NPNSPANSEAARMFSENKREYNRRVR 142
P+ P ++ A + +N + + R
Sbjct: 138 EPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 1 MSTPARKRLMRDFKRL---QQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTL 57
M+ A +R+ R+FK + ++ I D + I GP DTP++GG ++L +
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 116
+ E YP PP VRF+++++HPNI + G+ICLDIL++QW+ + +L S+Q+LL
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAA 124
Query: 117 NPNSPANSEAARMFSENKREYNRRVR 142
P+ P ++ A + +N + + R
Sbjct: 125 EPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 6 RKRLMRDFKRLQQDPPAGISGAPQD--NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY 63
+KRL ++ LQ DPP G++ + NSI W + G T ++G F+L +F+ Y
Sbjct: 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 64 PNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113
P P V F HP++Y++G ICL IL WSP V ++ SI S+L
Sbjct: 84 PFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 135
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTED 62
T A +RL +D+ R+++DP I P ++I+ W+ V+ GP+ TP++GG + L F +
Sbjct: 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 72
Query: 63 YPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPN 117
+P KPP++ ++ PN + +CL I + W+P + V+ ILT + S + +
Sbjct: 73 FPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG 128
Query: 118 PN 119
P
Sbjct: 129 PT 130
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 15/145 (10%)
Query: 1 MSTPARKRLMRDFKRLQQ---------DPPAGI--SGAPQDNS-IMLWNAVIFGPDDTPW 48
M+ R+++++K + + +P GI S P D + + W A+I GP DTP+
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 49 DGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAI 105
+ F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 106 LTSIQSLLCDPNPNSPANSEAARMF 130
+ ++ LL +P +SP + + +
Sbjct: 123 VHAVWRLLREPVSDSPLDVDIGNII 147
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A R+ ++ +PP + N+I +W G ++T + +KL + F +DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 65 NKPPTVRFVSR-MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113
KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI S+L
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 116
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 15/145 (10%)
Query: 1 MSTPARKRLMRDFKRLQQ---------DPPAGI--SGAPQDNS-IMLWNAVIFGPDDTPW 48
M+ R+++++K + + +P GI S P D + + W A+I GP DTP+
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 49 DGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAI 105
+ F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 106 LTSIQSLLCDPNPNSPANSEAARMF 130
+ ++ LL +P +SP + + +
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIGNII 147
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 17/126 (13%)
Query: 35 LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYADGSICL 89
+ +I GP DTP+ G F+ + F +DYP+ PP V S F+PN+Y DG +CL
Sbjct: 111 IXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCL 170
Query: 90 DIL-------QNQWSP-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAARMFSENKREY 137
IL + +W+P +L S+QSL+ +P N P S +++ REY
Sbjct: 171 SILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY 230
Query: 138 NRRVRE 143
+ +R+
Sbjct: 231 DGNIRQ 236
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 15/145 (10%)
Query: 1 MSTPARKRLMRDFKRLQQ---------DPPAGI--SGAPQDNS-IMLWNAVIFGPDDTPW 48
M+ R+++++K + + +P GI S P D + + W A+I GP DTP+
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 49 DGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAI 105
+ F++ ++ YP PP + F+ + + H N+ A G ICL+IL+ +W+P++D+
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122
Query: 106 LTSIQSLLCDPNPNSPANSEAARMF 130
+ ++ LL +P +SP + + +
Sbjct: 123 VHAVWRLLREPVCDSPLDVDIGAII 147
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYP 64
A R+ ++ ++PP + ++I +W G ++T + +K+ + F ++YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 65 NKPPTVRFVSR-MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113
KPP V F+ + H ++Y++G ICL +L + ++P ++ ++ SI S+L
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISML 130
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 14/112 (12%)
Query: 1 MSTPARKRLMRDFKRLQQDP----PAGISGAPQDNSIML--------WNAVIFGPDDTPW 48
M + KR+++D K L ++ A SG+P +I W + P D+ +
Sbjct: 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVY 64
Query: 49 DGG--TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP 98
G T++L++ F++DYP++PPTVRFV+ ++ P + +G IC ++ + W+P
Sbjct: 65 GGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
K L+++ L+ + P D + + + PD+ + GG F+ + + Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNPN 119
PP V+ +++++HPNI G ICL +L+ W+P + ++ + SL D N +
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFD 136
Query: 120 SPANSEAARMFSENKREYNRRVREIVEQ 147
P N EAA +K ++ +V + +++
Sbjct: 137 DPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
K L+++ L+ + P D + + + PD+ + GG F+ + + Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNPN 119
PP V+ +++++HPNI G ICL +L+ W+P + ++ + SL D N +
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFD 136
Query: 120 SPANSEAARMFSENKREYNRRVREIVEQ 147
P N EAA +K ++ +V + +++
Sbjct: 137 DPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 3 TPARKRLMRDFKRLQQ-DPPAGIS-GAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQ 58
P RL+ + +R Q+ + G+S G + I L W+ IFG T ++ + LT+
Sbjct: 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIF 79
Query: 59 FTEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSI-QSLLC 114
++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S+ Q +L
Sbjct: 80 CDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLS 138
Query: 115 DPNPNSPANSEAARMFSEN 133
N P +E ++S N
Sbjct: 139 SANKRLPQPNE-GEVYSNN 156
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 3 TPARKRLMRDFKRLQQ-DPPAGIS-GAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQ 58
P RL+ + +R Q+ + G+S G + I L W+ IFG T ++ + LT+
Sbjct: 24 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIF 83
Query: 59 FTEDYPNKPPTVRFVSRMFHPNIYADGSIC---LDILQNQWSPIYDVAAILTSI-QSLLC 114
++YP+ PPTV+F +++ + G + L IL+N W+ Y + IL S+ Q +L
Sbjct: 84 CDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLS 142
Query: 115 DPNPNSPANSEA 126
N P +E
Sbjct: 143 SANKRLPQPNEG 154
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 25/154 (16%)
Query: 2 STPARKRLM---RDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDD-----------TP 47
S A RLM RD R Q + ++S+ WN + D
Sbjct: 4 SVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKE 63
Query: 48 WDGGTF-KLTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAA 104
+G F L F +++P PP VR VS + + G+IC+++L Q WS Y + +
Sbjct: 64 KEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIES 123
Query: 105 ILTSIQSLLCDPNPNSPANSEAARMFSENKREYN 138
++ I + L +A F NK +Y+
Sbjct: 124 VIMQISATLV--------KGKARVQFGANKSQYS 149
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI- 87
+D ++ W +I GP T ++ + L ++ YP PP VRFV+++ + + +
Sbjct: 64 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
Query: 88 ---CLDILQNQWSPIYDVAAILTSIQSLL 113
+ +L +W Y + +L ++ L+
Sbjct: 124 DPRAISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI- 87
+D ++ W +I GP T ++ + L ++ YP PP VRFV+++ + + +
Sbjct: 36 EDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
Query: 88 ---CLDILQNQWSPIYDVAAILTSIQSLL 113
+ +L +W Y + +L ++ L+
Sbjct: 96 DPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI- 87
+D ++ W +I GP T ++ + L ++ YP PP VRFV+++ + + +
Sbjct: 54 EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
Query: 88 ---CLDILQNQWSPIYDVAAILTSIQSLL 113
+ +L +W Y + +L ++ L+
Sbjct: 114 DPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ I +
Sbjct: 33 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
Query: 89 ----LDILQNQWSPIYDVAAILTSIQSLL 113
+ +L +W Y + +L ++ L+
Sbjct: 93 DARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ I +
Sbjct: 39 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
Query: 89 ----LDILQNQWSPIYDVAAILTSIQSLL 113
+ +L +W Y + +L ++ L+
Sbjct: 99 DARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ + N + S
Sbjct: 34 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI-NMNGINNSSGM 92
Query: 89 LDI----LQNQWSPIYDVAAILTSIQSLL 113
+D + +W Y + +L ++ L+
Sbjct: 93 VDARSIPVLAKWQNSYSIKVVLQELRRLM 121
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 29 QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSIC 88
+D ++ W +I GP T ++ + L ++ YP PP+VRFV+++ I +
Sbjct: 44 EDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
Query: 89 ----LDILQNQWSPIYDVAAILTSIQSLL 113
+ +L +W Y + +L ++ L+
Sbjct: 104 DARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 55 LTLQFTEDYPNKPPTVRFVSRMFHPN-IYADGSICLDILQNQ-WSPIYDVAAILTSIQSL 112
L F +++P PP VR V + + G++C+++L Q WS Y + +++ I +
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 152
Query: 113 LCDPNPNSPANSEAARMFSENKREYN 138
L +A F NK +YN
Sbjct: 153 LV--------KGKARVQFGANKNQYN 170
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 4 PARKRLMRDFKRLQQD--PPAGISGAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQF 59
P RL+ + ++ ++ P + G + I + WN I GP + + + L++
Sbjct: 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDC 65
Query: 60 TEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDP 116
+YP+ PP V F+S++ P + G + D W Y + +L ++ + P
Sbjct: 66 GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 4 PARKRLMRDFKRLQQD--PPAGISGAPQDNSIML--WNAVIFGPDDTPWDGGTFKLTLQF 59
P RL+ + ++ ++ P + G + I + WN I GP + + + L++
Sbjct: 5 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDC 64
Query: 60 TEDYPNKPPTVRFVSRMFHPNIY-ADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDP 116
+YP+ PP V F+S++ P + G + D W Y + +L ++ + P
Sbjct: 65 GPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATP 123
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIF------GPDDTPW--DGGTFKL-TL 57
K+LM + D PA + N M+WN F P D W +GG F + +L
Sbjct: 175 KKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSL 234
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNI 81
+ NK ++ ++ + P++
Sbjct: 235 AIPANAKNKEGALKLINFLLRPDV 258
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIF------GPDDTPW--DGGTFKL-TL 57
K+LM + D PA + N M+WN F P D W +GG F + +L
Sbjct: 177 KKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSL 236
Query: 58 QFTEDYPNKPPTVRFVSRMFHPNI 81
+ NK ++ ++ + P++
Sbjct: 237 AIPANAKNKEGALKLINFLLRPDV 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,103,081
Number of Sequences: 62578
Number of extensions: 210646
Number of successful extensions: 544
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 121
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)