Query 031824
Match_columns 152
No_of_seqs 148 out of 1122
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0419 Ubiquitin-protein liga 100.0 1.2E-56 2.7E-61 303.1 15.2 152 1-152 1-152 (152)
2 COG5078 Ubiquitin-protein liga 100.0 1.4E-55 3E-60 311.9 17.3 150 1-150 1-152 (153)
3 KOG0417 Ubiquitin-protein liga 100.0 2E-55 4.2E-60 304.9 14.9 146 5-150 2-147 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 8.8E-51 1.9E-55 290.0 18.6 146 5-150 3-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.6E-50 7.8E-55 285.7 18.1 145 5-149 2-146 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 4.8E-47 1E-51 263.4 16.0 149 3-151 4-166 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 4.8E-46 1E-50 255.1 15.1 150 1-150 1-157 (158)
8 KOG0426 Ubiquitin-protein liga 100.0 8.1E-46 1.8E-50 250.7 14.7 149 1-149 1-163 (165)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.5E-45 3.3E-50 260.3 14.8 138 8-145 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 5.3E-45 1.2E-49 257.8 16.1 139 7-145 2-141 (141)
11 KOG0418 Ubiquitin-protein liga 100.0 1E-44 2.2E-49 258.8 14.2 149 1-150 1-153 (200)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.1E-43 2.3E-48 252.2 17.4 143 7-149 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 2.7E-43 5.8E-48 241.6 12.0 144 4-148 29-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 2.8E-40 6E-45 225.6 14.0 145 5-150 3-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 7.1E-39 1.5E-43 225.4 11.3 146 1-150 1-148 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 4.3E-38 9.4E-43 221.8 12.1 142 3-147 27-172 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 9.3E-37 2E-41 215.3 7.5 147 4-150 10-156 (223)
18 KOG0427 Ubiquitin conjugating 100.0 3.8E-32 8.2E-37 184.0 11.7 121 1-122 12-134 (161)
19 KOG0429 Ubiquitin-conjugating 100.0 7.5E-30 1.6E-34 186.6 13.8 144 7-151 22-171 (258)
20 KOG0894 Ubiquitin-protein liga 100.0 1.8E-29 3.9E-34 184.0 15.1 117 3-121 4-125 (244)
21 KOG0428 Non-canonical ubiquiti 99.9 7.7E-23 1.7E-27 152.1 9.8 113 3-118 10-126 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 3.1E-17 6.8E-22 142.1 10.1 114 7-120 854-978 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.1E-15 2.3E-20 132.7 10.5 113 4-116 282-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 3.1E-14 6.8E-19 97.3 8.0 110 5-114 6-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 1.2E-07 2.6E-12 66.3 7.4 66 49-114 34-105 (133)
26 PF08694 UFC1: Ubiquitin-fold 98.6 4.1E-08 8.9E-13 68.1 3.1 95 6-106 26-135 (161)
27 KOG0897 Predicted ubiquitin-co 98.5 4E-07 8.7E-12 60.9 5.7 93 53-146 13-111 (122)
28 PF05743 UEV: UEV domain; Int 98.4 1.6E-06 3.4E-11 59.7 7.4 77 33-114 32-116 (121)
29 KOG3357 Uncharacterized conser 97.9 3.3E-05 7.1E-10 53.1 5.2 95 6-106 29-138 (167)
30 KOG2391 Vacuolar sorting prote 97.8 0.00033 7.2E-09 55.4 10.1 82 32-118 51-140 (365)
31 PF05773 RWD: RWD domain; Int 96.7 0.0076 1.6E-07 40.0 6.4 69 7-76 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.4 0.079 1.7E-06 36.4 9.7 88 23-114 13-120 (122)
33 smart00591 RWD domain in RING 95.8 0.07 1.5E-06 35.0 7.2 27 49-75 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.3 0.033 7.2E-07 40.2 4.4 60 55-114 57-125 (162)
35 PF09765 WD-3: WD-repeat regio 90.0 0.85 1.8E-05 36.0 5.4 84 5-111 100-184 (291)
36 KOG4018 Uncharacterized conser 89.8 1.4 3.1E-05 33.1 6.2 63 9-73 7-71 (215)
37 KOG0309 Conserved WD40 repeat- 88.1 2.6 5.6E-05 37.5 7.3 67 7-75 423-491 (1081)
38 PF06113 BRE: Brain and reprod 82.7 7.5 0.00016 31.3 7.2 66 33-110 53-121 (333)
39 PF14460 Prok-E2_D: Prokaryoti 82.7 2.2 4.8E-05 31.0 3.9 46 73-121 89-137 (175)
40 TIGR03737 PRTRC_B PRTRC system 77.5 4.3 9.4E-05 31.0 4.1 42 74-119 131-176 (228)
41 PRK05414 urocanate hydratase; 66.8 15 0.00032 31.4 5.2 30 123-152 281-310 (556)
42 TIGR01228 hutU urocanate hydra 66.5 16 0.00034 31.2 5.3 30 123-152 272-301 (545)
43 cd00421 intradiol_dioxygenase 56.8 17 0.00038 25.4 3.5 24 50-73 65-89 (146)
44 PF00845 Gemini_BL1: Geminivir 55.6 31 0.00067 26.7 4.8 49 31-79 100-156 (276)
45 smart00340 HALZ homeobox assoc 55.3 11 0.00024 20.9 1.7 15 5-19 20-34 (44)
46 PF01175 Urocanase: Urocanase; 54.7 16 0.00036 31.2 3.5 28 124-151 272-299 (546)
47 COG2987 HutU Urocanate hydrata 51.9 37 0.0008 28.8 5.1 29 124-152 282-310 (561)
48 cd03457 intradiol_dioxygenase_ 51.8 22 0.00048 26.2 3.5 25 49-73 85-109 (188)
49 PF03366 YEATS: YEATS family; 48.4 69 0.0015 20.3 5.1 43 34-78 2-44 (84)
50 cd03459 3,4-PCD Protocatechuat 45.1 34 0.00073 24.5 3.5 25 50-74 72-101 (158)
51 PF06113 BRE: Brain and reprod 44.9 30 0.00065 28.0 3.4 23 52-74 307-329 (333)
52 KOG0662 Cyclin-dependent kinas 44.1 22 0.00049 26.7 2.5 55 65-119 167-225 (292)
53 cd05845 Ig2_L1-CAM_like Second 37.6 79 0.0017 20.5 4.1 26 48-75 16-41 (95)
54 PF11333 DUF3135: Protein of u 37.3 76 0.0017 20.2 3.9 27 124-150 7-33 (83)
55 PF12018 DUF3508: Domain of un 36.7 57 0.0012 25.5 3.9 29 122-150 239-267 (281)
56 PF14135 DUF4302: Domain of un 35.8 1.3E+02 0.0028 22.8 5.6 72 4-86 9-104 (235)
57 KOG3285 Spindle assembly check 35.1 77 0.0017 23.4 4.0 43 4-46 119-161 (203)
58 KOG0177 20S proteasome, regula 34.5 10 0.00022 28.1 -0.6 30 84-113 135-164 (200)
59 KOG1047 Bifunctional leukotrie 34.5 43 0.00093 29.1 3.0 29 46-75 248-279 (613)
60 KOG4445 Uncharacterized conser 33.6 53 0.0011 26.3 3.2 25 51-75 45-69 (368)
61 PF09280 XPC-binding: XPC-bind 32.4 79 0.0017 18.7 3.1 22 121-142 33-54 (59)
62 TIGR02423 protocat_alph protoc 31.6 68 0.0015 23.8 3.4 24 50-73 96-124 (193)
63 PF14455 Metal_CEHH: Predicted 30.5 1.3E+02 0.0027 21.8 4.4 64 7-75 8-76 (177)
64 cd03463 3,4-PCD_alpha Protocat 30.0 77 0.0017 23.3 3.4 23 51-73 93-120 (185)
65 PF12065 DUF3545: Protein of u 29.7 42 0.00091 20.0 1.6 14 5-18 35-48 (59)
66 smart00107 BTK Bruton's tyrosi 29.3 24 0.00051 18.8 0.4 15 76-90 7-22 (36)
67 PRK15486 hpaC 4-hydroxyphenyla 29.2 2.2E+02 0.0048 20.5 7.1 69 9-94 6-77 (170)
68 PF00779 BTK: BTK motif; Inte 29.1 20 0.00043 18.6 0.1 15 76-90 2-17 (32)
69 PF13950 Epimerase_Csub: UDP-g 28.3 61 0.0013 19.2 2.2 20 94-113 36-55 (62)
70 PF07380 Pneumo_M2: Pneumoviru 25.1 1.3E+02 0.0029 19.1 3.3 18 57-74 7-24 (89)
71 TIGR02296 HpaC 4-hydroxyphenyl 24.4 45 0.00098 23.5 1.3 30 65-94 36-68 (154)
72 PF02970 TBCA: Tubulin binding 23.5 79 0.0017 20.3 2.2 15 3-17 6-20 (90)
73 TIGR02439 catechol_proteo cate 22.0 1.2E+02 0.0026 24.0 3.4 24 50-73 180-221 (285)
74 CHL00130 rbcS ribulose-1,5-bis 21.8 2.9E+02 0.0063 19.4 4.8 32 6-38 61-93 (138)
75 TIGR03615 RutF pyrimidine util 21.5 58 0.0013 23.0 1.4 67 11-94 4-73 (156)
76 PHA03200 uracil DNA glycosylas 21.3 1.3E+02 0.0028 23.4 3.4 35 33-70 82-117 (255)
77 COG2819 Predicted hydrolase of 21.1 1.5E+02 0.0032 23.2 3.6 29 46-74 16-46 (264)
78 cd03461 1,2-HQD Hydroxyquinol 20.5 1.4E+02 0.003 23.6 3.4 24 50-73 172-213 (277)
79 PF04881 Adeno_GP19K: Adenovir 20.2 1E+02 0.0022 21.4 2.3 22 29-50 43-64 (139)
80 COG1853 Conserved protein/doma 20.1 77 0.0017 22.7 1.8 30 65-94 44-76 (176)
No 1
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-56 Score=303.08 Aligned_cols=152 Identities=84% Similarity=1.367 Sum_probs=150.3
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q 031824 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpn 80 (152)
||++|.+||++|+++|+++++.||+..|.++|++.|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031824 81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 81 v~~~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
||.+|.+|+|+|...|+|.|++.+||.+||++|.+|++++|+|.|||.+|++|+.+|.|++++.|++||.++
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~~ 152 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSDI 152 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-55 Score=311.90 Aligned_cols=150 Identities=54% Similarity=1.047 Sum_probs=145.4
Q ss_pred CCh-HHHHHHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccc
Q 031824 1 MST-PARKRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 1 Ms~-~a~~RL~~E~~~l~~~~~~gi~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~H 78 (152)
|++ .|.+||++|++.+++++++|+++.|.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 444 4999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 79 pnv~~~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|||+.+|+||+++|.++|+|.++|.+||.+|+++|.+|+.++|+|.|||++|++|+++|.++||++++++++
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-55 Score=304.86 Aligned_cols=146 Identities=42% Similarity=0.912 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q 031824 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
|.+||++||+++.+++++|+++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||++.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 85 G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|.||+|+|...|+|+++|..||.+|+++|.+|++++|++.+++.+|+.|+++|.+.||+|+++.++
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.8e-51 Score=290.04 Aligned_cols=146 Identities=38% Similarity=0.777 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q 031824 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
+.|||++|++++.++++.|+.+.+.++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 85 G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++++++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998764
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.6e-50 Score=285.65 Aligned_cols=145 Identities=47% Similarity=0.916 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q 031824 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
|.+||++|++++++++++|+++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031824 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 85 G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~ 149 (152)
|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+++++++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-47 Score=263.45 Aligned_cols=149 Identities=44% Similarity=0.829 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeecC-CCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccc
Q 031824 3 TPARKRLMRDFKRLQQDPPAGISGAPQD-NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~gi~~~~~~-~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv 81 (152)
+.+..-|+++|++|++++.+|+.+...+ .|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|++|||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 3467788999999999999999999854 599999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEecCcC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031824 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 82 ~~~G~ic~~~l~-------------~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s 148 (152)
|++|.+|+++|- +.|.|.+|+++||.+|.+||.+||.++|+|-|||+.|++|+++|.++|++||++|
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999999993 3599999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 031824 149 WTA 151 (152)
Q Consensus 149 ~~~ 151 (152)
++.
T Consensus 164 ~e~ 166 (171)
T KOG0425|consen 164 QEE 166 (171)
T ss_pred HHh
Confidence 875
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-46 Score=255.06 Aligned_cols=150 Identities=39% Similarity=0.789 Sum_probs=144.1
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeec-----CCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031824 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-----DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~gi~~~~~-----~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~ 75 (152)
||+.++.||++|-+.+.++.|-|+++.|. ..|+..|++.|.|+.||+||||.|.+.+.||++||.+||++.|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 89999999999999999999999999994 3478999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEecCcCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 76 MFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 76 i~Hpnv~~~G~ic~~~l~~~--W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
+||||||.+|.||+++|.++ |+|++||.+||.+||++|.+||..+|+|.||...|.+|+.+|.++||.++++...
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999765 9999999999999999999999999999999999999999999999999998764
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-46 Score=250.72 Aligned_cols=149 Identities=42% Similarity=0.880 Sum_probs=143.7
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEee-cCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccc
Q 031824 1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~gi~~~~-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hp 79 (152)
|+-.|+|||++||++|..++|+||.+.| +++|+++|.+.|.||+||+|+||.|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 7889999999999999999999999999 678999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceEecCcC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHH
Q 031824 80 NIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 146 (152)
Q Consensus 80 nv~~~G~ic~~~l~-------------~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~ 146 (152)
||+.+|++|+++|- +.|+|..+++.||.++.+||.+|+-++++|.+|+.++++||++|.+.|++.+.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999982 46999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 031824 147 QSW 149 (152)
Q Consensus 147 ~s~ 149 (152)
++.
T Consensus 161 KtL 163 (165)
T KOG0426|consen 161 KTL 163 (165)
T ss_pred Hhh
Confidence 874
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.5e-45 Score=260.27 Aligned_cols=138 Identities=48% Similarity=1.007 Sum_probs=128.7
Q ss_pred HHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCc
Q 031824 8 RLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 8 RL~~E~~~l~~~~~~gi~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~G~ 86 (152)
||++|+++++++++.|+.+.+.++ |+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCcCC-CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 031824 87 ICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 145 (152)
Q Consensus 87 ic~~~l~~-~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~ 145 (152)
||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999985 499999999999999999999999999999999999999999999999974
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.3e-45 Score=257.81 Aligned_cols=139 Identities=49% Similarity=1.039 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCc
Q 031824 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~G~ 86 (152)
|||++|+++++++++.|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCcCCC-CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 031824 87 ICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 145 (152)
Q Consensus 87 ic~~~l~~~-W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~ 145 (152)
||++++..+ |+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++|++++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999877 99999999999999999999999999999999999999999999999874
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=258.83 Aligned_cols=149 Identities=36% Similarity=0.727 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHHhcCC---CCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccc
Q 031824 1 MSTPARKRLMRDFKRLQQDP---PAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~---~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~ 77 (152)
||. +.+||++|.+++.+++ ..||.++..++|+.+..+.|.||+|||||||.|.++|++|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 788 9999999999999988 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 78 Hpnv~-~~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
||||+ .+|.||+|++.+.|.+++|+..+|.+||++|..|++.+|.+...|++|.+|++.|.+.||.|+...+.
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 99998 68999999999999999999999999999999999999999999999999999999999999987764
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.1e-43 Score=252.24 Aligned_cols=143 Identities=46% Similarity=0.979 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCC-CcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCC
Q 031824 7 KRLMRDFKRLQQDPPAGISGAPQDN-SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~gi~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~G 85 (152)
+||++|+++++++++.|+++.+.++ |++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999999765 999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031824 86 SICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 86 ~ic~~~l~-~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~ 149 (152)
.+|++.+. ++|+|++++.++|.+|+++|.+|+.++|+|.||+.+|.+|+++|.++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999863
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=241.59 Aligned_cols=144 Identities=42% Similarity=0.825 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q 031824 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~ 83 (152)
...|||+.|+..|.....+||++-|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||.|.|+|+.||||||.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031824 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 84 ~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s 148 (152)
.|.||+|+|.+.|+..+++.+||.+||++|-+|+..+|+|..||+++. |.++|++.+.++-++.
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999 9999999998876653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=225.61 Aligned_cols=145 Identities=25% Similarity=0.647 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeE-EeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q 031824 5 ARKRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~gi~-~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~ 83 (152)
|.+||.+|+.+|+++....+. +..++.|++.|++.| .|.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~ll-ipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLL-IPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEe-cCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 789999999999999877554 445688999999999 588899999999999999999999999999999999999999
Q ss_pred CCceEecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 84 DGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 84 ~G~ic~~~l~-~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
.|.+|+.++. ++|+|++.+.+||+.|..++.+|+++.|++.|+|..|..|+..|.++|.++++++.+
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999995 789999999999999999999999999999999999999999999999999998865
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-39 Score=225.41 Aligned_cols=146 Identities=34% Similarity=0.755 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q 031824 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpn 80 (152)
||+ ..||+..|...|... +..|...++++.+.+|.+.||.+|||+||++++.|.+|++||++.|.|.|.++|||||
T Consensus 1 ms~-~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCC-cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 454 558999999988875 4568888999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceEecCcCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 81 IY-ADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 81 v~-~~G~ic~~~l~~~W~p~~~i~~il~~-l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|+ .+|.||+++++..|+|.+.+..|+.. |-.+|..||+.||+|.|||.+|..++++|.++||+++++.+.
T Consensus 77 IDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred chhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99 79999999999999999999999965 688999999999999999999999999999999999998764
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=221.83 Aligned_cols=142 Identities=31% Similarity=0.685 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeE--EeecCCCcc--eEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccc
Q 031824 3 TPARKRLMRDFKRLQQDPPAGIS--GAPQDNSIM--LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~gi~--~~~~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~H 78 (152)
+.|+-||++|..++.. |++++ +....+++. +.+++| .|+.+.|+||.|.|.+.+|+.||++||+|.|+|++||
T Consensus 27 s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti-~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTI-TPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEE-ccCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 5688899999988854 44544 222334443 588998 5888899999999999999999999999999999999
Q ss_pred ccccCCCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 031824 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 147 (152)
Q Consensus 79 pnv~~~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~ 147 (152)
|||+.+|.||+++|+++|+|..+|.+|+.+|+.+|.+|+++||+|.|||+.+++|++.|.++||+.+.-
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~g 172 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSG 172 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998753
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-37 Score=215.32 Aligned_cols=147 Identities=36% Similarity=0.704 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccC
Q 031824 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~ 83 (152)
-..+.|.+|++.+...||.||.|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-+|+|+||||||-.
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 84 ~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
+|.||.+.|..+|+|..+|.+||..|+.+|..|++++.+|.||.+++.++.++|.++||-+++-|.+
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998876654
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.8e-32 Score=183.99 Aligned_cols=121 Identities=34% Similarity=0.689 Sum_probs=111.0
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc-cccc
Q 031824 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-MFHP 79 (152)
Q Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~-i~Hp 79 (152)
||..|.+||++|+.+++.++|.|+... ..+|+.+|.+.+.|-+||.|+|.+|.++++||+.||++.|.|.|..+ ..||
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 355789999999999999999999877 78899999999999999999999999999999999999999999976 4799
Q ss_pred cccCCCceEecCcCCCCCCcCCHHHHHHHHHHhhcC-CCCCCCC
Q 031824 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD-PNPNSPA 122 (152)
Q Consensus 80 nv~~~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~-p~~~~p~ 122 (152)
+|+++|.||+++|.++|+|++++.+|..+|.+||+. ..-..|.
T Consensus 91 HiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 91 HIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred ceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 999999999999999999999999999999999974 3333443
No 19
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-30 Score=186.60 Aligned_cols=144 Identities=26% Similarity=0.501 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCC--CCCeeeEeccccccccc-C
Q 031824 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIY-A 83 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~--~pP~i~f~t~i~Hpnv~-~ 83 (152)
--|+.||..+++.+.+||+|.|+..|-+.|.++|++..| .|.||+|+|+|.+|++||. .-|+|.|.+.++||+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 357889999999999999999999999999999999998 8999999999999999996 46999999999999999 6
Q ss_pred CCceEecCcCCCCCCc-CCHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHHHCHHHHHHHHHHHHHHhhhc
Q 031824 84 DGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP--ANSEAARMFSENKREYNRRVREIVEQSWTA 151 (152)
Q Consensus 84 ~G~ic~~~l~~~W~p~-~~i~~il~~l~~~l~~p~~~~p--~n~ea~~~~~~~~~~f~~~~~~~~~~s~~~ 151 (152)
++.+|++-....|... .+|+++|..+|.+|++|+...+ .|+||+.+|++++++|.++|+++|+.|...
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~ 171 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSM 171 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8999999998889776 7899999999999999998876 599999999999999999999999998764
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-29 Score=184.05 Aligned_cols=117 Identities=33% Similarity=0.697 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q 031824 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~ 82 (152)
..|.|||++||+.|+++|.++|.+.|..+|+++||.+|.||+||||+||.|+.+|.||++||++||.|++.||- ..+-
T Consensus 4 k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--GRFk 81 (244)
T KOG0894|consen 4 KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--GRFK 81 (244)
T ss_pred hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--Ccee
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999851 1222
Q ss_pred CCCceEecCcC---CCCCCcCCHHHHHHHHHHhhcC--CCCCCC
Q 031824 83 ADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCD--PNPNSP 121 (152)
Q Consensus 83 ~~G~ic~~~l~---~~W~p~~~i~~il~~l~~~l~~--p~~~~p 121 (152)
.+.++|+++.+ +.|+|.+++++||.+|.+.|.+ |...+.
T Consensus 82 tntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 82 TNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred cCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 45799998774 7899999999999999998874 444443
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.7e-23 Score=152.10 Aligned_cols=113 Identities=28% Similarity=0.638 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccccccc
Q 031824 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~ 82 (152)
+++.|||++|.++|+ +|-..+.+.|.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+- ..+-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 578999999999998 7777788999999999999999999999999999999999999999999999999852 2233
Q ss_pred CCCceEecCcC---CCCCCcCCHHHHHHHHHHhhc-CCCC
Q 031824 83 ADGSICLDILQ---NQWSPIYDVAAILTSIQSLLC-DPNP 118 (152)
Q Consensus 83 ~~G~ic~~~l~---~~W~p~~~i~~il~~l~~~l~-~p~~ 118 (152)
.+..||+++.. +.|.|.++|.+.|..|..+|- .|+-
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~G 126 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEG 126 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCC
Confidence 56689998874 789999999999999988874 4543
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=142.14 Aligned_cols=114 Identities=36% Similarity=0.715 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc--cccccccCC
Q 031824 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYAD 84 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~--i~Hpnv~~~ 84 (152)
+..+.|++-|..+.|.||+|...++.+....+.|.|+.||||..|.|.|++.||++||..||.++..+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 445567888888899999999999999999999999999999999999999999999999999999975 689999999
Q ss_pred CceEecCcC-------CCCCCcCCHHHHHHHHHHhhc--CCCCCC
Q 031824 85 GSICLDILQ-------NQWSPIYDVAAILTSIQSLLC--DPNPNS 120 (152)
Q Consensus 85 G~ic~~~l~-------~~W~p~~~i~~il~~l~~~l~--~p~~~~ 120 (152)
|++|+++|+ +-|+|..++.++|.+||.+.. .|.++.
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne 978 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNE 978 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCc
Confidence 999999995 459999999999999999875 455543
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-15 Score=132.74 Aligned_cols=113 Identities=35% Similarity=0.768 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc---ccccc
Q 031824 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPN 80 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~---i~Hpn 80 (152)
.-.+|+++|++-+.++.++|+.+.+.+..+....+.|.||.||||++|+|.|+|.||..||..||.+.+++. .+.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999976 67999
Q ss_pred ccCCCceEecCcC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 031824 81 IYADGSICLDILQ-------NQWSPI-YDVAAILTSIQSLLCDP 116 (152)
Q Consensus 81 v~~~G~ic~~~l~-------~~W~p~-~~i~~il~~l~~~l~~p 116 (152)
.+.+|+||+++|- +.|+|. .+|.++|..||.++.+-
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9999999999983 679998 88999999999998644
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.1e-14 Score=97.31 Aligned_cols=110 Identities=20% Similarity=0.462 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEee--cCCC--cceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccccc
Q 031824 5 ARKRLMRDFKRLQQDPPAGISGAP--QDNS--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~gi~~~~--~~~n--~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpn 80 (152)
.-.||++|+.+-++...+|..-.. +.+| +..|.++|.||+.|+||+.+|.++|...++||..||.++|.+++--..
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 446899999888776665543332 2333 467999999999999999999999999999999999999999998888
Q ss_pred cc-CCCceEecCc--CCCCCCcCCHHHHHHHHHHhhc
Q 031824 81 IY-ADGSICLDIL--QNQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 81 v~-~~G~ic~~~l--~~~W~p~~~i~~il~~l~~~l~ 114 (152)
|. .+|.+.-..+ ..+|...+++..+|..++.++.
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 87 6677765444 3889999999999999986553
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.66 E-value=1.2e-07 Score=66.31 Aligned_cols=66 Identities=33% Similarity=0.678 Sum_probs=59.5
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeeEeccc---ccccccCCCceEe---cCcCCCCCCcCCHHHHHHHHHHhhc
Q 031824 49 DGGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 49 ~gg~f~~~i~~p~~YP~~pP~i~f~t~i---~Hpnv~~~G~ic~---~~l~~~W~p~~~i~~il~~l~~~l~ 114 (152)
.|+.+.+.|.+|+.||..||.|....+. +-|||+.+|.+|+ ...-+.|.|.-.+.++|.....+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999998654 6899999999999 6667889999999999999988887
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.58 E-value=4.1e-08 Score=68.13 Aligned_cols=95 Identities=22% Similarity=0.434 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCc----------EEEEEEEeCCCCCCCCCeeeEec-
Q 031824 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVS- 74 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg----------~f~~~i~~p~~YP~~pP~i~f~t- 74 (152)
..||.+||..|.+ ++.....+...|.-.=.-+.||-|.|. .|.+++.+|..||..||.|....
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 5799999999876 455555566666655556777777774 46678889999999999998763
Q ss_pred ccccccccCCCceEecCcC-CCC---CCcCCHHHHH
Q 031824 75 RMFHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (152)
Q Consensus 75 ~i~Hpnv~~~G~ic~~~l~-~~W---~p~~~i~~il 106 (152)
.--..-.+..|+||++..+ .=| .|.++|.+.|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 2234566789999999885 235 6778888776
No 27
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4e-07 Score=60.92 Aligned_cols=93 Identities=23% Similarity=0.495 Sum_probs=67.9
Q ss_pred EEEEEEeCCCCCCCCCeeeEecccc-cccccCCCceEecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCC--CCCCHHHHH
Q 031824 53 FKLTLQFTEDYPNKPPTVRFVSRMF-HPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPN--SPANSEAAR 128 (152)
Q Consensus 53 f~~~i~~p~~YP~~pP~i~f~t~i~-Hpnv~~~G~ic~~~l~-~~W~p~~~i~~il~~l~~~l~~p~~~--~p~n~ea~~ 128 (152)
.-+.+.|+++||+.||.++...|+- ..-|-.+|.||+.++. .+|+.+++++.++.++..++..-... .+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567889999999999999887643 3334578999999995 78999999999999999999876654 44544433
Q ss_pred HHH--HCHHHHHHHHHHHHH
Q 031824 129 MFS--ENKREYNRRVREIVE 146 (152)
Q Consensus 129 ~~~--~~~~~f~~~~~~~~~ 146 (152)
+|. ..-+.|+..++-+-+
T Consensus 92 ~~s~~qa~~sfksLv~~hek 111 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHEK 111 (122)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 553 344556665554433
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.41 E-value=1.6e-06 Score=59.73 Aligned_cols=77 Identities=19% Similarity=0.474 Sum_probs=55.0
Q ss_pred cceEEEEEecCCCCCCCCcEE--EEEEEeCCCCCCCCCeeeEecccc-----cccccCCCceEecCcCCCCCC-cCCHHH
Q 031824 33 IMLWNAVIFGPDDTPWDGGTF--KLTLQFTEDYPNKPPTVRFVSRMF-----HPNIYADGSICLDILQNQWSP-IYDVAA 104 (152)
Q Consensus 33 ~~~w~~~i~gp~~tpy~gg~f--~~~i~~p~~YP~~pP~i~f~t~i~-----Hpnv~~~G~ic~~~l~~~W~p-~~~i~~ 104 (152)
+....++|.. .|+|..| .+.|.+|.+||.+||.+....... +.+|+.+|++.+..+ .+|++ ..++.+
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 4556666643 4888887 577889999999999998874322 449999999988777 67876 788999
Q ss_pred HHHHHHHhhc
Q 031824 105 ILTSIQSLLC 114 (152)
Q Consensus 105 il~~l~~~l~ 114 (152)
++..+...|.
T Consensus 107 lv~~l~~~F~ 116 (121)
T PF05743_consen 107 LVQELQAVFS 116 (121)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHh
Confidence 9999998886
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=3.3e-05 Score=53.07 Aligned_cols=95 Identities=20% Similarity=0.407 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCc----------EEEEEEEeCCCCCCCCCeeeEecc
Q 031824 6 RKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg----------~f~~~i~~p~~YP~~pP~i~f~t~ 75 (152)
..||.+||+.|.. +++...++...|.-.-..+.||.|-|. .|.+++.+|-.||...|.|....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5799999999976 455566677778776667889998885 366777789999999999876421
Q ss_pred -cccccccCCCceEecCcC-CCC---CCcCCHHHHH
Q 031824 76 -MFHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (152)
Q Consensus 76 -i~Hpnv~~~G~ic~~~l~-~~W---~p~~~i~~il 106 (152)
--.-..+..|.||+...+ .-| .|.++|.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 112345678999997654 446 4566776654
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.00033 Score=55.45 Aligned_cols=82 Identities=20% Similarity=0.509 Sum_probs=63.0
Q ss_pred CcceEEEEEecCCCCCCCCcEEE--EEEEeCCCCCCCCCeeeEecc-----cccccccCCCceEecCcCCCCC-CcCCHH
Q 031824 32 SIMLWNAVIFGPDDTPWDGGTFK--LTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQNQWS-PIYDVA 103 (152)
Q Consensus 32 n~~~w~~~i~gp~~tpy~gg~f~--~~i~~p~~YP~~pP~i~f~t~-----i~Hpnv~~~G~ic~~~l~~~W~-p~~~i~ 103 (152)
+++...++|. .+|.|..|. +.|.+.+.||..||.+..... --|-||+.+|.|.+..| .+|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHH
Confidence 3455555653 468887774 677899999999999976522 12899999999999988 6786 458899
Q ss_pred HHHHHHHHhhcCCCC
Q 031824 104 AILTSIQSLLCDPNP 118 (152)
Q Consensus 104 ~il~~l~~~l~~p~~ 118 (152)
.+++.+...|.++.+
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999988875443
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.72 E-value=0.0076 Score=39.98 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEe--cCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccc
Q 031824 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIF--GPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~--gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i 76 (152)
.+.+.|+..|+.-=+..+ ......+...+.+.+. ....+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 466778888876433333 2333444555666662 22344455668999999999999999999877643
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.39 E-value=0.079 Score=36.43 Aligned_cols=88 Identities=19% Similarity=0.397 Sum_probs=58.5
Q ss_pred CeEEeecCCCcceEEEEEec---CCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCCCce--EecCc-----
Q 031824 23 GISGAPQDNSIMLWNAVIFG---PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI--CLDIL----- 92 (152)
Q Consensus 23 gi~~~~~~~n~~~w~~~i~g---p~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~G~i--c~~~l----- 92 (152)
|+..+...+.-..|.+ |.| |.| .|.+..-.+-|.+|+.||..+|.+.+..|-.... ..|.+ |.+..
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G-~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEG-KYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCC-ccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 6677766666666655 434 444 7999999999999999999999877766533211 11223 32211
Q ss_pred ---------CCCCCCc-CCHHHHHHHHHHhhc
Q 031824 93 ---------QNQWSPI-YDVAAILTSIQSLLC 114 (152)
Q Consensus 93 ---------~~~W~p~-~~i~~il~~l~~~l~ 114 (152)
...|.|. -+|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 3458887 458888888877653
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.83 E-value=0.07 Score=34.97 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=22.6
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031824 49 DGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 49 ~gg~f~~~i~~p~~YP~~pP~i~f~t~ 75 (152)
....+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988763
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.29 E-value=0.033 Score=40.20 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=46.8
Q ss_pred EEEEeCCCCCCCCCeeeEecccc---cccccCC-----CceEecCcC-CCCCCcCCHHHHHHHHHHhhc
Q 031824 55 LTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 55 ~~i~~p~~YP~~pP~i~f~t~i~---Hpnv~~~-----G~ic~~~l~-~~W~p~~~i~~il~~l~~~l~ 114 (152)
+.|.|+.+||..+|.+.+.-..| +||+... ..+|+---. .+|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 56899999999999887775433 5777654 679985443 578999999999999887664
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=89.96 E-value=0.85 Score=36.03 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecccccccccCC
Q 031824 5 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
...+|.+|+.++..+.. +.+ ..++++....+.+..- +....++|.++.+||.++|.+...-++
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHHhccccc--eEE-ecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 34678888888866532 222 2467788888888532 257889999999999999976433332
Q ss_pred CceEecCcCCCCCC-cCCHHHHHHHHHH
Q 031824 85 GSICLDILQNQWSP-IYDVAAILTSIQS 111 (152)
Q Consensus 85 G~ic~~~l~~~W~p-~~~i~~il~~l~~ 111 (152)
.+...|.+ ..++.+++...+.
T Consensus 163 ------~~~~~w~~~~ssL~~v~~qF~~ 184 (291)
T PF09765_consen 163 ------PFSLSWSPSQSSLKDVVQQFQE 184 (291)
T ss_dssp -------HHHHHHCHT-SHHHHHHHHHH
T ss_pred ------chhhhhcccccCHHHHHHHHHH
Confidence 11235777 5677666655443
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.83 E-value=1.4 Score=33.07 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCC--CCCCcEEEEEEEeCCCCCCCCCeeeEe
Q 031824 9 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDT--PWDGGTFKLTLQFTEDYPNKPPTVRFV 73 (152)
Q Consensus 9 L~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t--py~gg~f~~~i~~p~~YP~~pP~i~f~ 73 (152)
...|+..|...-+.-+. ...+.+.....+.|.-..|. -+.| .+.+.+.++++||.++|.|.+.
T Consensus 7 Qe~E~EaLeSIY~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 34555555544333231 11122332355555333322 2333 7889999999999999999444
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.07 E-value=2.6 Score=37.55 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEE-EEEEEeCCCCCCC-CCeeeEecc
Q 031824 7 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTF-KLTLQFTEDYPNK-PPTVRFVSR 75 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f-~~~i~~p~~YP~~-pP~i~f~t~ 75 (152)
+-|.+|+.-+-.. -.++.++-.+-.-..-.+.+-+|-. +-.|.+| ++.|.||.+||.+ +|.++|..+
T Consensus 423 QnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4466666666432 2245555445556677788888765 3466665 8999999999997 699999854
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=82.72 E-value=7.5 Score=31.31 Aligned_cols=66 Identities=21% Similarity=0.455 Sum_probs=45.1
Q ss_pred cceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEe-cccccccccCCCceEecCcCCCCCCc--CCHHHHHHHH
Q 031824 33 IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPI--YDVAAILTSI 109 (152)
Q Consensus 33 ~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~-t~i~Hpnv~~~G~ic~~~l~~~W~p~--~~i~~il~~l 109 (152)
.....+.| ||.|...+-+|.|...||..||-+.|- ..-|+|-... + .. ..+|.+. ..+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~---l--~~-L~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK---L--PS-LVNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh---c--ch-hhcCCCCCchHHHHHHHHH
Confidence 44566666 799999999999999999999999996 3457784321 1 11 2578765 3344555444
Q ss_pred H
Q 031824 110 Q 110 (152)
Q Consensus 110 ~ 110 (152)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 3
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=82.65 E-value=2.2 Score=31.03 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=27.1
Q ss_pred eccccc---ccccCCCceEecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCC
Q 031824 73 VSRMFH---PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121 (152)
Q Consensus 73 ~t~i~H---pnv~~~G~ic~~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~p 121 (152)
.|++|| +||+.+|+||+.... .|.......+......|.+....++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 345665 599999999997643 3444334446666555443334343
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=77.49 E-value=4.3 Score=30.96 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=27.9
Q ss_pred ccccc---ccccCCCceEecCcCCCCCCc-CCHHHHHHHHHHhhcCCCCC
Q 031824 74 SRMFH---PNIYADGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPN 119 (152)
Q Consensus 74 t~i~H---pnv~~~G~ic~~~l~~~W~p~-~~i~~il~~l~~~l~~p~~~ 119 (152)
|++|| +||+.+|+||+.... .|. .++.+ +......|.+-.+.
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FT 176 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFT 176 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCccc
Confidence 44555 489999999997654 555 45666 77776666554443
No 41
>PRK05414 urocanate hydratase; Provisional
Probab=66.76 E-value=15 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.6
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031824 123 NSEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 123 n~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
-.|+..+..+|++.|.+.|+++..++-+++
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 310 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARHVEAM 310 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 357888889999999999999999887653
No 42
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=66.51 E-value=16 Score=31.21 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.4
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031824 123 NSEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 123 n~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
-.|+.++..+|++.|.+.|++++.++-+++
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 301 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHVRAM 301 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 357888889999999999999999887653
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=56.76 E-value=17 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.703 Sum_probs=22.0
Q ss_pred CcEEEEEEEeCCCCC-CCCCeeeEe
Q 031824 50 GGTFKLTLQFTEDYP-NKPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~~p~~YP-~~pP~i~f~ 73 (152)
.|.|.|.-.+|-.|| ..||.|+|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999887
No 44
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=55.63 E-value=31 Score=26.69 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=33.1
Q ss_pred CCcceEEEEEecCCCCCCCC---cEEEEEEEeC-----CCCCCCCCeeeEecccccc
Q 031824 31 NSIMLWNAVIFGPDDTPWDG---GTFKLTLQFT-----EDYPNKPPTVRFVSRMFHP 79 (152)
Q Consensus 31 ~n~~~w~~~i~gp~~tpy~g---g~f~~~i~~p-----~~YP~~pP~i~f~t~i~Hp 79 (152)
.|..-|.+....-+...-.| +.|+.++.++ -+-||++|+|..+++-|..
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 34555777776544434444 3456677765 6789999999999986643
No 45
>smart00340 HALZ homeobox associated leucin zipper.
Probab=55.29 E-value=11 Score=20.90 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcC
Q 031824 5 ARKRLMRDFKRLQQD 19 (152)
Q Consensus 5 a~~RL~~E~~~l~~~ 19 (152)
.-+||++|+.+|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 458999999999763
No 46
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=54.73 E-value=16 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhc
Q 031824 124 SEAARMFSENKREYNRRVREIVEQSWTA 151 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~~ 151 (152)
.|+.++..+|++.|.+.|+++..++-++
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv~A 299 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHVEA 299 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999988765
No 47
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=51.90 E-value=37 Score=28.78 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.4
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031824 124 SEAARMFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
.|+.++-.+|+++|.+.|+++++++.++|
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv~Am 310 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHVEAM 310 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999999999987764
No 48
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=51.79 E-value=22 Score=26.21 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeeEe
Q 031824 49 DGGTFKLTLQFTEDYPNKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~~p~~YP~~pP~i~f~ 73 (152)
+.|.|.|.=.+|--||..+|.|+|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 3478999999999999999999987
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=48.43 E-value=69 Score=20.33 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=29.0
Q ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccccc
Q 031824 34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 34 ~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~i~H 78 (152)
..|.+.+.|+.+..-..-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999988864444555788888888775 77777766554
No 50
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=45.05 E-value=34 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=21.9
Q ss_pred CcEEEEEEEeCCCCC-----CCCCeeeEec
Q 031824 50 GGTFKLTLQFTEDYP-----NKPPTVRFVS 74 (152)
Q Consensus 50 gg~f~~~i~~p~~YP-----~~pP~i~f~t 74 (152)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 378999999999999 8999998873
No 51
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=44.95 E-value=30 Score=27.97 Aligned_cols=23 Identities=22% Similarity=0.571 Sum_probs=20.8
Q ss_pred EEEEEEEeCCCCCCCCCeeeEec
Q 031824 52 TFKLTLQFTEDYPNKPPTVRFVS 74 (152)
Q Consensus 52 ~f~~~i~~p~~YP~~pP~i~f~t 74 (152)
.|-++|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 47788999999999999999986
No 52
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=44.13 E-value=22 Score=26.65 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=43.8
Q ss_pred CCCCeeeEeccccccccc--CCCceEecCcCCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 031824 65 NKPPTVRFVSRMFHPNIY--ADGSICLDILQNQW--SPIYDVAAILTSIQSLLCDPNPN 119 (152)
Q Consensus 65 ~~pP~i~f~t~i~Hpnv~--~~G~ic~~~l~~~W--~p~~~i~~il~~l~~~l~~p~~~ 119 (152)
..||.|-|-.+.|...|+ +.|-|-..+.+.+| .|+.++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 368999999999999987 56766666667777 58888999999988888766654
No 53
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=37.63 E-value=79 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.9
Q ss_pred CCCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031824 48 WDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 48 y~gg~f~~~i~~p~~YP~~pP~i~f~t~ 75 (152)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778888888899999 588888864
No 54
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=37.31 E-value=76 Score=20.19 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 124 SEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
.+...++++|+++|.+..++.+++-+.
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee~I~ 33 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEEMIE 33 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 356778899999999998888876543
No 55
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=36.75 E-value=57 Score=25.52 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031824 122 ANSEAARMFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 122 ~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
.+.+|+..|.++++.|.+.+.+.++++.+
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 68899999999999999999999988754
No 56
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=35.84 E-value=1.3e+02 Score=22.80 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCC-------------------C
Q 031824 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY-------------------P 64 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~Y-------------------P 64 (152)
++..||.+.++++++. ..+...-|.+.++...+.-|.| |.|.+.|.++= -
T Consensus 9 s~~eR~~e~~~~~k~~---------L~~a~~GW~~~yyp~~~~~~GG--y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~ 77 (235)
T PF14135_consen 9 SPAERINEALAEYKKI---------LTSAPNGWKLEYYPKTDQSYGG--YTFLMKFDDDGKVTMASDFDSASTPSTSSYR 77 (235)
T ss_pred CHHHHHHHHHHHHHHH---------HhcCCCceEEEEECCCCccCCc--EEEEEEECCCCeEEEEEccCCCCceeeEEEE
Confidence 4668888877777652 1233344777776443332333 66666665433 1
Q ss_pred C---CCCeeeEec--ccccccccCCCc
Q 031824 65 N---KPPTVRFVS--RMFHPNIYADGS 86 (152)
Q Consensus 65 ~---~pP~i~f~t--~i~Hpnv~~~G~ 86 (152)
. .-|.+.|.| ++.|-..++.+.
T Consensus 78 ~~~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 78 LKQDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred EecCCceEEEEEeCCceEEEccCCCcc
Confidence 1 338888885 367776654433
No 57
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.09 E-value=77 Score=23.42 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCC
Q 031824 4 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDT 46 (152)
Q Consensus 4 ~a~~RL~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t 46 (152)
-..+|+++|++.+.++.-..++..|.-+..-.+.+.++.-.++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 3579999999999998888888888777777788888655543
No 58
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.51 E-value=10 Score=28.08 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCceEecCcCCCCCCcCCHHHHHHHHHHhh
Q 031824 84 DGSICLDILQNQWSPIYDVAAILTSIQSLL 113 (152)
Q Consensus 84 ~G~ic~~~l~~~W~p~~~i~~il~~l~~~l 113 (152)
.+.+|++++...|+|.+|++..+.-++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 467999999999999999887776665544
No 59
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=34.46 E-value=43 Score=29.07 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEEEeCCCCCC---CCCeeeEecc
Q 031824 46 TPWDGGTFKLTLQFTEDYPN---KPPTVRFVSR 75 (152)
Q Consensus 46 tpy~gg~f~~~i~~p~~YP~---~pP~i~f~t~ 75 (152)
+||.=|.|.+. .+|++||+ +-|-++|.|+
T Consensus 248 GpY~WgryDll-vlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLL-VLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEE-EecCCCCcccccCcceeeecc
Confidence 46888888874 48999998 4699999987
No 60
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=33.64 E-value=53 Score=26.33 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.7
Q ss_pred cEEEEEEEeCCCCCCCCCeeeEecc
Q 031824 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 51 g~f~~~i~~p~~YP~~pP~i~f~t~ 75 (152)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567888999999999999999876
No 61
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=32.42 E-value=79 Score=18.70 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHCHHHHHHHHH
Q 031824 121 PANSEAARMFSENKREYNRRVR 142 (152)
Q Consensus 121 p~n~ea~~~~~~~~~~f~~~~~ 142 (152)
..||+.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3799999999999999998764
No 62
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.64 E-value=68 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.4
Q ss_pred CcEEEEEEEeCCCCCC-----CCCeeeEe
Q 031824 50 GGTFKLTLQFTEDYPN-----KPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~~p~~YP~-----~pP~i~f~ 73 (152)
.|.|.|.-..|-.||. .||.|+|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999998 78888776
No 63
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=30.55 E-value=1.3e+02 Score=21.76 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCC----CCeEEeecCCCcceEEEEEecCCC-CCCCCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031824 7 KRLMRDFKRLQQDPP----AGISGAPQDNSIMLWNAVIFGPDD-TPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 7 ~RL~~E~~~l~~~~~----~gi~~~~~~~n~~~w~~~i~gp~~-tpy~gg~f~~~i~~p~~YP~~pP~i~f~t~ 75 (152)
+..-+|...+..... .|+.+. +.+.-...+.+ ++++ .| .--...+++.|. ||-..||.|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF-~~~kvaP-~~~~~~lr~d~~-n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIF-AAPKVAP-RSIGLRLRFDFT-NWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEe-eCCccCc-cccceEEEEecc-ccCcCCCceEEecc
Confidence 344556655544321 255544 33333333434 4443 33 122245666665 49999999999976
No 64
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=29.95 E-value=77 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.3
Q ss_pred cEEEEEEEeCCCCCC-----CCCeeeEe
Q 031824 51 GTFKLTLQFTEDYPN-----KPPTVRFV 73 (152)
Q Consensus 51 g~f~~~i~~p~~YP~-----~pP~i~f~ 73 (152)
|.|.|.-.+|--||. .||.|+|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 77777765
No 65
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=29.70 E-value=42 Score=20.01 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhc
Q 031824 5 ARKRLMRDFKRLQQ 18 (152)
Q Consensus 5 a~~RL~~E~~~l~~ 18 (152)
-.+||++||.++--
T Consensus 35 Dr~rL~kEL~d~D~ 48 (59)
T PF12065_consen 35 DRQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHHccc
Confidence 46799999998843
No 66
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=29.31 E-value=24 Score=18.83 Aligned_cols=15 Identities=33% Similarity=1.077 Sum_probs=11.3
Q ss_pred cccccccCCCc-eEec
Q 031824 76 MFHPNIYADGS-ICLD 90 (152)
Q Consensus 76 i~Hpnv~~~G~-ic~~ 90 (152)
-|||.++.+|+ .|..
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 48999998887 5543
No 67
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=29.17 E-value=2.2e+02 Score=20.50 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEe---cccccccccCCC
Q 031824 9 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV---SRMFHPNIYADG 85 (152)
Q Consensus 9 L~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~---t~i~Hpnv~~~G 85 (152)
+..++++....-+.|+++....++ +.+ .|-+-.--..++ .+||.|-+. +..-|+-+...|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 345688888888889987753221 111 122221112222 478999886 346788899999
Q ss_pred ceEecCcCC
Q 031824 86 SICLDILQN 94 (152)
Q Consensus 86 ~ic~~~l~~ 94 (152)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999853
No 68
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=29.07 E-value=20 Score=18.60 Aligned_cols=15 Identities=27% Similarity=0.899 Sum_probs=9.2
Q ss_pred cccccccCCCc-eEec
Q 031824 76 MFHPNIYADGS-ICLD 90 (152)
Q Consensus 76 i~Hpnv~~~G~-ic~~ 90 (152)
.|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998776 5543
No 69
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=28.30 E-value=61 Score=19.21 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=12.3
Q ss_pred CCCCCcCCHHHHHHHHHHhh
Q 031824 94 NQWSPIYDVAAILTSIQSLL 113 (152)
Q Consensus 94 ~~W~p~~~i~~il~~l~~~l 113 (152)
-+|.|.++|.+++.....-.
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 36999999999998766543
No 70
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=25.10 E-value=1.3e+02 Score=19.07 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=13.7
Q ss_pred EEeCCCCCCCCCeeeEec
Q 031824 57 LQFTEDYPNKPPTVRFVS 74 (152)
Q Consensus 57 i~~p~~YP~~pP~i~f~t 74 (152)
+.||+.||-+--.+-..+
T Consensus 7 mIlPdKYPCSIsSiLI~s 24 (89)
T PF07380_consen 7 MILPDKYPCSISSILITS 24 (89)
T ss_pred EEcCCCCCceeeEEEEec
Confidence 679999999877665554
No 71
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=24.40 E-value=45 Score=23.51 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=24.5
Q ss_pred CCCCeeeEe---cccccccccCCCceEecCcCC
Q 031824 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (152)
Q Consensus 65 ~~pP~i~f~---t~i~Hpnv~~~G~ic~~~l~~ 94 (152)
.+||.|.+. ...-|+.|..+|.+|+++|.+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~ 68 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAH 68 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcH
Confidence 589999886 346688999999999999853
No 72
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=23.52 E-value=79 Score=20.29 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHh
Q 031824 3 TPARKRLMRDFKRLQ 17 (152)
Q Consensus 3 ~~a~~RL~~E~~~l~ 17 (152)
+.+.+||.+|+....
T Consensus 6 t~~vkRL~KE~~~Y~ 20 (90)
T PF02970_consen 6 TGVVKRLLKEEASYE 20 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788888776554
No 73
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=22.02 E-value=1.2e+02 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.3
Q ss_pred CcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031824 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~~p~~YP------------------~~pP~i~f~ 73 (152)
.|.|.|.-..|.-|| ..||.|+|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 378999999999997 578888887
No 74
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=21.81 E-value=2.9e+02 Score=19.40 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCCCeEEee-cCCCcceEEE
Q 031824 6 RKRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNA 38 (152)
Q Consensus 6 ~~RL~~E~~~l~~~~~~gi~~~~-~~~n~~~w~~ 38 (152)
...++.|+.++.+.-|.. ++.. -.||...|.+
T Consensus 61 ~~~Vl~Ei~~CrkayP~~-yIRl~gFDn~rq~Q~ 93 (138)
T CHL00130 61 PAAVMFEINECRKQKPNG-YIKVNAFDASRGVES 93 (138)
T ss_pred HHHHHHHHHHHHHHCCCc-EEEEEEeeCCCcEEE
Confidence 467899999998876653 3333 5678888877
No 75
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=21.47 E-value=58 Score=23.00 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCeEEeecCCCcceEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEe---cccccccccCCCce
Q 031824 11 RDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV---SRMFHPNIYADGSI 87 (152)
Q Consensus 11 ~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~i~f~---t~i~Hpnv~~~G~i 87 (152)
+++++....-+.|+++....+. |.+ .|-+ +.-=-.--.+||.+.|. +..-|+.+..+|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~~------------~~~-~g~t----vss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDGP------------AGR-AGFT----ASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeecC------------CCc-eeEE----EEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 4677888888888887643211 111 1211 11111134589999887 34568889999999
Q ss_pred EecCcCC
Q 031824 88 CLDILQN 94 (152)
Q Consensus 88 c~~~l~~ 94 (152)
++++|.+
T Consensus 67 ~VnvL~~ 73 (156)
T TIGR03615 67 CVNTLAA 73 (156)
T ss_pred EEEECcH
Confidence 9999853
No 76
>PHA03200 uracil DNA glycosylase; Provisional
Probab=21.29 E-value=1.3e+02 Score=23.42 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCCCCCCcEEE-EEEEeCCCCCCCCCee
Q 031824 33 IMLWNAVIFGPDDTPWDGGTFK-LTLQFTEDYPNKPPTV 70 (152)
Q Consensus 33 ~~~w~~~i~gp~~tpy~gg~f~-~~i~~p~~YP~~pP~i 70 (152)
+..-.|+|.|.+ ||.||.=. +-+..+.+++. ||..
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL 117 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSL 117 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccH
Confidence 445789999965 78875432 22344566653 6655
No 77
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.06 E-value=1.5e+02 Score=23.25 Aligned_cols=29 Identities=14% Similarity=0.480 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEEEeCCCCCCCC--CeeeEec
Q 031824 46 TPWDGGTFKLTLQFTEDYPNKP--PTVRFVS 74 (152)
Q Consensus 46 tpy~gg~f~~~i~~p~~YP~~p--P~i~f~t 74 (152)
+.+.|..|++.|..|.+||-.- |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 4688999999999999999887 9999885
No 78
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=20.45 E-value=1.4e+02 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.584 Sum_probs=20.6
Q ss_pred CcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031824 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~~p~~YP------------------~~pP~i~f~ 73 (152)
.|.|.|.-..|.-|| ..||.|+|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 478999999999998 478888887
No 79
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=20.21 E-value=1e+02 Score=21.43 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.7
Q ss_pred cCCCcceEEEEEecCCCCCCCC
Q 031824 29 QDNSIMLWNAVIFGPDDTPWDG 50 (152)
Q Consensus 29 ~~~n~~~w~~~i~gp~~tpy~g 50 (152)
...+...|.|++.|++||+...
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~ 64 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKS 64 (139)
T ss_pred cCCCCcceEEEEECCCCcceec
Confidence 4677888999999999986654
No 80
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=20.07 E-value=77 Score=22.70 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCCCeeeEe---cccccccccCCCceEecCcCC
Q 031824 65 NKPPTVRFV---SRMFHPNIYADGSICLDILQN 94 (152)
Q Consensus 65 ~~pP~i~f~---t~i~Hpnv~~~G~ic~~~l~~ 94 (152)
++||.|.+. ..--++++..+|.++++++.+
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~ 76 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLSE 76 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCCH
Confidence 468988886 345688999999999998853
Done!