Query 031826
Match_columns 152
No_of_seqs 109 out of 128
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 100.0 5.8E-28 1.3E-32 185.8 12.1 130 7-137 1-149 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.9 4.9E-21 1.1E-25 149.8 10.5 131 14-147 1-152 (154)
3 PF01284 MARVEL: Membrane-asso 98.9 5.2E-08 1.1E-12 71.8 11.7 129 12-143 5-143 (144)
4 KOG4016 Synaptic vesicle prote 77.4 16 0.00035 31.0 7.9 120 13-143 25-164 (233)
5 PF12304 BCLP: Beta-casein lik 53.8 1.3E+02 0.0028 25.0 9.7 97 49-149 43-162 (188)
6 PF06016 Reovirus_L2: Reovirus 24.5 9.9 0.00021 39.3 -2.8 23 85-107 883-905 (1289)
7 COG0833 LysP Amino acid transp 17.9 4.7E+02 0.01 25.0 6.9 56 10-67 369-424 (541)
8 TIGR03765 ICE_PFL_4695 integra 14.4 77 0.0017 23.9 0.7 22 70-91 15-36 (105)
9 TIGR03068 srtB_sig_NPQTN sorta 14.1 2.7E+02 0.0058 17.0 2.9 23 38-60 6-28 (33)
10 cd04466 S1_YloQ_GTPase S1_YloQ 13.4 35 0.00076 21.9 -1.3 8 83-90 38-45 (68)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.95 E-value=5.8e-28 Score=185.83 Aligned_cols=130 Identities=28% Similarity=0.367 Sum_probs=121.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhccCC------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031826 7 TPGTATGLFLRIAQCIFAAGSIASMASTHS------------FFNFTAFCYLIAAMGLQVIWSFGLALIDAYAIVQKKVL 74 (152)
Q Consensus 7 ~pgt~~gL~LR~~q~~fa~~sl~~M~s~~~------------F~s~TaF~YLva~~~Lq~lwSl~la~~d~yall~k~~l 74 (152)
++++..+++||+.|++++++|+.+|++++| |+++++|+|+|+++++++.||+.|++.++|.+.+|+ .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~ 79 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L 79 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 357789999999999999999999999998 999999999999999999999999999999999999 7
Q ss_pred CCcceeeeeeehhHHHHHHHHHhhhhhhhhhHhhhcCC------CCCCCc-ccchHHHHHHHHHHHHHHH
Q 031826 75 HSPVLISLFVVGDWVTATLSLAAASASAGITTLYFYDL------GHCSVD-NECQKYQASVGLAICCCFT 137 (152)
Q Consensus 75 ~~~~~~~l~~vGD~V~a~L~~aAAcasAgit~l~~~d~------~~C~~~-~~C~~~~~s~amAFlsw~~ 137 (152)
+++...++.+++||+.+||+++|++|+++++.+.++|. +.|+.+ .+|+|+++|++++|++|++
T Consensus 80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 77788888999999999999999999999999988884 469987 5799999999999999974
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.85 E-value=4.9e-21 Score=149.85 Aligned_cols=131 Identities=18% Similarity=0.290 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC--------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcce
Q 031826 14 LFLRIAQCIFAAGSIASMASTHS--------------FFNFTAFCYLIAAMGLQVIWSFGLALIDAYAIVQKKVLHSPVL 79 (152)
Q Consensus 14 L~LR~~q~~fa~~sl~~M~s~~~--------------F~s~TaF~YLva~~~Lq~lwSl~la~~d~yall~k~~l~~~~~ 79 (152)
+.||+..+.++++|..+|++++| |+++++|.|+|+++++.+.||+.|+...+|.+.+++... .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~---~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFF---K 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---H
Confidence 47999999999999999999854 788999999999999999999999999999988777662 2
Q ss_pred eeeeeehhHHHHHHHHHhhhhhhhhhHhhhcCCC------CCCCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031826 80 ISLFVVGDWVTATLSLAAASASAGITTLYFYDLG------HCSVD-NECQKYQASVGLAICCCFTIATSSLIMLW 147 (152)
Q Consensus 80 ~~l~~vGD~V~a~L~~aAAcasAgit~l~~~d~~------~C~~~-~~C~~~~~s~amAFlsw~~~a~S~l~~~w 147 (152)
.++.++|||+++||+++|++|+++++++.++|.+ .|.++ ++|+|...|++++|+++++.+.+++++-.
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~ 152 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAI 152 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5668999999999999999999999999988854 58877 68999999999999999999999998854
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.87 E-value=5.2e-08 Score=71.78 Aligned_cols=129 Identities=19% Similarity=0.090 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeee
Q 031826 12 TGLFLRIAQCIFAAGSIASMASTH------SFFNFTAFCYLIAAMGLQVIWSFGLALIDAYAIVQKKVLHSPVLISLFVV 85 (152)
Q Consensus 12 ~gL~LR~~q~~fa~~sl~~M~s~~------~F~s~TaF~YLva~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~~v 85 (152)
-...+|+.|++++.+.+..++... .....++.-|.+++.++..++++...+.+.+. .|+.. +.......++
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~-~~~~~~~~~~ 81 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKYRP-RIPWPLVEFI 81 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhccc-ccccchhHHH
Confidence 356899999999999999998775 35667788899999999999999999999988 22222 2222233588
Q ss_pred hhHHHHHHHHHhhhhhhhhhHhhhcC--CCCCC-Cc-ccchHHHHHHHHHHHHHHHHHHHHH
Q 031826 86 GDWVTATLSLAAASASAGITTLYFYD--LGHCS-VD-NECQKYQASVGLAICCCFTIATSSL 143 (152)
Q Consensus 86 GD~V~a~L~~aAAcasAgit~l~~~d--~~~C~-~~-~~C~~~~~s~amAFlsw~~~a~S~l 143 (152)
.|.+.+.+-+++++..+--..-.+.+ .+.+. +. ..|+..+++.+++|++|++-..|..
T Consensus 82 ~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 82 FDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999888777543322211 11111 11 4599999999999999999988875
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.42 E-value=16 Score=31.01 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC--------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 031826 13 GLFLRIAQCIFAAGSIASMASTHS--------------FFNFTAFCYLIAAMGLQVIWSFGLALIDAYAIVQKKVLHSPV 78 (152)
Q Consensus 13 gL~LR~~q~~fa~~sl~~M~s~~~--------------F~s~TaF~YLva~~~Lq~lwSl~la~~d~yall~k~~l~~~~ 78 (152)
..++|+..++|+++-+.-..++ + ..+-.+=.|=+++-.+..+=++...++|+|-=......-+++
T Consensus 25 ~ti~R~~~~lFsliVf~si~~e-Gy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rkr 103 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFGSIVNE-GYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRKR 103 (233)
T ss_pred hhHHHHHHHHHHHhheeeeccc-cccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHH
Confidence 4689999999998877644333 3 233445569999999999999999999999433322222223
Q ss_pred eeeeeeehhHHHHHH----HHHhhhhhhhhhHhhhcCCCCCCCccc--chHHHHHHHHHHHHHHHHHHHHH
Q 031826 79 LISLFVVGDWVTATL----SLAAASASAGITTLYFYDLGHCSVDNE--CQKYQASVGLAICCCFTIATSSL 143 (152)
Q Consensus 79 ~~~l~~vGD~V~a~L----~~aAAcasAgit~l~~~d~~~C~~~~~--C~~~~~s~amAFlsw~~~a~S~l 143 (152)
. +.+|.+.+-| =|-+=|==+ + ....+.=++ |. -++.+++|+++|+|.+.-..-++
T Consensus 104 a----Vl~Dl~~SalwtflwfvGFc~l~---n--qwqvs~p~~-~~~~a~saraaIafsffSilsW~~~A~ 164 (233)
T KOG4016|consen 104 A----VLADLGVSALWAFLWFVGFCFLA---N--QWQVSKPKE-NPLGAGSARAAIAFSFFSILSWGGQAV 164 (233)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH---H--HhhccCCCC-CCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2 2345544321 121111100 0 111111112 32 67899999998877655444333
No 5
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=53.78 E-value=1.3e+02 Score=24.99 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCc-ceeeeeeehhHHHHHHHHHhhhhh-----hhhhHhhhcC-----------
Q 031826 49 AMGLQVIWSFGLALIDAYAIVQKKVLHSP-VLISLFVVGDWVTATLSLAAASAS-----AGITTLYFYD----------- 111 (152)
Q Consensus 49 ~~~Lq~lwSl~la~~d~yall~k~~l~~~-~~~~l~~vGD~V~a~L~~aAAcas-----Agit~l~~~d----------- 111 (152)
++++.+.=.+.-....|-+++..|.++++ -.|.+++++ . .-.++++||+- ..+|+..+..
T Consensus 43 sNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S-~--ln~LlSaAc~vGL~~ai~~Tv~~~Gr~Ll~~C~f~~~ 119 (188)
T PF12304_consen 43 SNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVS-L--LNALLSAACAVGLLLAISLTVANQGRNLLAGCNFTNL 119 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHhCchhHhhcCCCCCh
Confidence 34444444444456667788888888776 445544332 2 23356667752 3333332211
Q ss_pred ------CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 031826 112 ------LGHCSVDNECQKYQASVGLAICCCFTIATSSLIMLWLL 149 (152)
Q Consensus 112 ------~~~C~~~~~C~~~~~s~amAFlsw~~~a~S~l~~~w~l 149 (152)
.+.||. ++++=|.++.++=+.+-++.+.=+.+++|-.
T Consensus 120 ~~~~~it~dCPF-DpTRIY~TtL~LW~ps~ll~~~EavfS~rCf 162 (188)
T PF12304_consen 120 NALSSITNDCPF-DPTRIYDTTLALWIPSILLSAVEAVFSVRCF 162 (188)
T ss_pred hhccCCCCCCCC-CcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347988 9999999999999999999999999988864
No 6
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=24.49 E-value=9.9 Score=39.28 Aligned_cols=23 Identities=57% Similarity=0.380 Sum_probs=17.4
Q ss_pred ehhHHHHHHHHHhhhhhhhhhHh
Q 031826 85 VGDWVTATLSLAAASASAGITTL 107 (152)
Q Consensus 85 vGD~V~a~L~~aAAcasAgit~l 107 (152)
=+|-|+++|+|.||||++++|.+
T Consensus 883 ~~D~vtailSLGAAaA~a~~tl~ 905 (1289)
T PF06016_consen 883 PFDAVTAILSLGAAAASANVTLD 905 (1289)
T ss_dssp --SEEEECTCHHHHHHHCT--HH
T ss_pred CCCEEEEEeeehhhhhcCCCcHH
Confidence 35889999999999999999954
No 7
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=17.88 E-value=4.7e+02 Score=24.99 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031826 10 TATGLFLRIAQCIFAAGSIASMASTHSFFNFTAFCYLIAAMGLQVIWSFGLALIDAYA 67 (152)
Q Consensus 10 t~~gL~LR~~q~~fa~~sl~~M~s~~~F~s~TaF~YLva~~~Lq~lwSl~la~~d~ya 67 (152)
++.|..++..-.......+++|.+.. .+-+.|-||+++.++...-.-.-.++.=|+
T Consensus 369 ~r~GvP~~al~vt~~fg~lafl~~~~--~~~~vf~wL~~isg~s~~i~W~~I~~shir 424 (541)
T COG0833 369 DRRGVPLVALLVTLLFGLLAFLNSSF--KETTVFNWLLNISGLSGFIAWGSICLSHIR 424 (541)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666676555 677799999999998877443444444443
No 8
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=14.40 E-value=77 Score=23.92 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=17.0
Q ss_pred hhccCCCcceeeeeeehhHHHH
Q 031826 70 QKKVLHSPVLISLFVVGDWVTA 91 (152)
Q Consensus 70 ~k~~l~~~~~~~l~~vGD~V~a 91 (152)
.+|.++.|.+-.+|.|||=-.|
T Consensus 15 ~~r~l~~pg~~p~FlIGdD~~S 36 (105)
T TIGR03765 15 QRRPLNLPGLTPLFLIGDDPAS 36 (105)
T ss_pred ccceecCCCCCceEEEeCCHHH
Confidence 5677888888899999985443
No 9
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=14.12 E-value=2.7e+02 Score=16.98 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 031826 38 FNFTAFCYLIAAMGLQVIWSFGL 60 (152)
Q Consensus 38 ~s~TaF~YLva~~~Lq~lwSl~l 60 (152)
....+|.|++...++..+.+..+
T Consensus 6 ~gtp~y~y~Ip~v~lflL~~~~i 28 (33)
T TIGR03068 6 AGTPAYIYAIPVASLALLIAITL 28 (33)
T ss_pred CCCcchhhHHHHHHHHHHHHHHH
Confidence 35567999999888777666544
No 10
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=13.39 E-value=35 Score=21.91 Aligned_cols=8 Identities=50% Similarity=0.530 Sum_probs=6.6
Q ss_pred eeehhHHH
Q 031826 83 FVVGDWVT 90 (152)
Q Consensus 83 ~~vGD~V~ 90 (152)
.++||||.
T Consensus 38 ~~VGD~V~ 45 (68)
T cd04466 38 PAVGDRVE 45 (68)
T ss_pred CCCCcEEE
Confidence 58999984
Done!