Query 031826
Match_columns 152
No_of_seqs 109 out of 128
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:06:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyl_W VP1; non-enveloped viru 21.2 8.4 0.00029 38.4 -2.6 23 85-107 889-911 (1299)
2 1ej6_A Lambda2; icosahedral, n 15.4 12 0.0004 37.3 -3.1 24 84-107 881-904 (1289)
3 4h31_A Otcase, ornithine carba 13.6 1.4E+02 0.0046 25.3 3.3 30 59-88 161-190 (358)
4 4a8t_A Putrescine carbamoyltra 9.8 1.7E+02 0.0057 24.7 2.7 27 59-88 154-184 (339)
5 1iq5_B Ca2+/calmodulin depende 9.8 2.3E+02 0.0078 15.7 2.3 16 63-78 11-26 (27)
6 4a8p_A Putrescine carbamoyltra 9.3 1.8E+02 0.0061 24.7 2.6 27 59-88 132-162 (355)
7 1g4d_A Repressor protein C; pr 8.7 1.7E+02 0.0057 19.1 1.8 16 3-18 12-27 (69)
8 3l1l_A Arginine/agmatine antip 7.9 6.5E+02 0.022 20.0 5.5 33 41-73 348-380 (445)
9 1ckk_B Camkk, protein (RAT Ca2 7.8 1.9E+02 0.0067 15.9 1.5 15 63-77 11-25 (26)
10 1tns_A MU-transposase; DNA-bin 7.3 2.1E+02 0.0072 19.1 1.8 15 3-17 12-26 (76)
No 1
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=21.18 E-value=8.4 Score=38.37 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=19.9
Q ss_pred ehhHHHHHHHHHhhhhhhhhhHh
Q 031826 85 VGDWVTATLSLAAASASAGITTL 107 (152)
Q Consensus 85 vGD~V~a~L~~aAAcasAgit~l 107 (152)
=+|-|+++|+|.||||+++++.+
T Consensus 889 ~~d~vtailSLGAA~a~a~~tl~ 911 (1299)
T 3iyl_W 889 RCDSATAIFTIGAAAAAAGTDLI 911 (1299)
T ss_dssp CCSEEEETTTHHHHHHHTTCCHH
T ss_pred CCCEEEEeeechhhhhhCCCcHH
Confidence 35788999999999999999854
No 2
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=15.41 E-value=12 Score=37.31 Aligned_cols=24 Identities=50% Similarity=0.486 Sum_probs=20.6
Q ss_pred eehhHHHHHHHHHhhhhhhhhhHh
Q 031826 84 VVGDWVTATLSLAAASASAGITTL 107 (152)
Q Consensus 84 ~vGD~V~a~L~~aAAcasAgit~l 107 (152)
.=+|-|++++++.||||.+++|..
T Consensus 881 ~~~D~vt~i~SLGAA~A~a~~tl~ 904 (1289)
T 1ej6_A 881 VRGDIVTCMLSLGAAAAGKSMTFD 904 (1289)
T ss_dssp CCCSEEEECSCHHHHHHHHTCCHH
T ss_pred CCCcEEEEEeechhhhhccCCcHH
Confidence 346889999999999999998844
No 3
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=13.62 E-value=1.4e+02 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhccCCCcceeeeeeehhH
Q 031826 59 GLALIDAYAIVQKKVLHSPVLISLFVVGDW 88 (152)
Q Consensus 59 ~la~~d~yall~k~~l~~~~~~~l~~vGD~ 88 (152)
+|++.|.|.+...+..+.-.-+.+-.+||.
T Consensus 161 tQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~ 190 (358)
T 4h31_A 161 TQILADFLTMLEHSQGKALADIQFAYLGDA 190 (358)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCEEEEESCT
T ss_pred hHHHHHHHHHHHHhcCCCcCceEEEecCCC
Confidence 689999999987543222223455689995
No 4
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=9.83 E-value=1.7e+02 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhc----cCCCcceeeeeeehhH
Q 031826 59 GLALIDAYAIVQKK----VLHSPVLISLFVVGDW 88 (152)
Q Consensus 59 ~la~~d~yall~k~----~l~~~~~~~l~~vGD~ 88 (152)
+|++.|.|.+..++ ++... .+-++||.
T Consensus 154 tQaLaDl~Ti~e~~~~G~~l~gl---kva~vGD~ 184 (339)
T 4a8t_A 154 TQELGDLCTMVEHLPEGKKLEDC---KVVFVGDA 184 (339)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGC---EEEEESSC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCC---EEEEECCC
Confidence 68999999999887 34443 34479996
No 5
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=9.76 E-value=2.3e+02 Score=15.71 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=12.0
Q ss_pred HHHHHHHhhccCCCcc
Q 031826 63 IDAYAIVQKKVLHSPV 78 (152)
Q Consensus 63 ~d~yall~k~~l~~~~ 78 (152)
+-+=+++.||+++||-
T Consensus 11 ilvk~Ml~~~sf~nPf 26 (27)
T 1iq5_B 11 ILVKAMGHRKRFGNPF 26 (27)
T ss_dssp HHHHHHHHHTSSSCSC
T ss_pred HHHHHHHhcccccCCC
Confidence 3455788899999983
No 6
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=9.27 E-value=1.8e+02 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhc----cCCCcceeeeeeehhH
Q 031826 59 GLALIDAYAIVQKK----VLHSPVLISLFVVGDW 88 (152)
Q Consensus 59 ~la~~d~yall~k~----~l~~~~~~~l~~vGD~ 88 (152)
+|++.|.|.+..++ ++.+. .+-++||.
T Consensus 132 tQaLaDl~TI~E~~~~G~~l~gl---kva~vGD~ 162 (355)
T 4a8p_A 132 TQELGDLCTMVEHLPEGKKLEDC---KVVFVGDA 162 (355)
T ss_dssp HHHHHHHHHHHHTCCTTCCGGGC---EEEEESCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCC---EEEEECCC
Confidence 68999999999887 34433 34479995
No 7
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=8.70 E-value=1.7e+02 Score=19.10 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=11.8
Q ss_pred CCCCCCCCchhHHHHH
Q 031826 3 VFAGTPGTATGLFLRI 18 (152)
Q Consensus 3 ~~~g~pgt~~gL~LR~ 18 (152)
++||+|.|..|+-.|.
T Consensus 12 ~l~glP~s~~gi~~~A 27 (69)
T 1g4d_A 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 5688898888875543
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.92 E-value=6.5e+02 Score=19.97 Aligned_cols=33 Identities=3% Similarity=-0.008 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031826 41 TAFCYLIAAMGLQVIWSFGLALIDAYAIVQKKV 73 (152)
Q Consensus 41 TaF~YLva~~~Lq~lwSl~la~~d~yall~k~~ 73 (152)
+.|-+++.......+.+..+...-...++.|++
T Consensus 348 ~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 348 KEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 556777777777777777777777777777766
No 9
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=7.78 E-value=1.9e+02 Score=15.85 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=10.7
Q ss_pred HHHHHHHhhccCCCc
Q 031826 63 IDAYAIVQKKVLHSP 77 (152)
Q Consensus 63 ~d~yall~k~~l~~~ 77 (152)
+-+=+++.||+++||
T Consensus 11 ilvk~Mlr~~sf~nP 25 (26)
T 1ckk_B 11 ILVKSMLRKRSFGNP 25 (26)
T ss_dssp HHHHHHCSSSCCCCC
T ss_pred HHHHHHhhcccccCC
Confidence 345567788888887
No 10
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=7.28 E-value=2.1e+02 Score=19.05 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.1
Q ss_pred CCCCCCCCchhHHHH
Q 031826 3 VFAGTPGTATGLFLR 17 (152)
Q Consensus 3 ~~~g~pgt~~gL~LR 17 (152)
++||+|.|..|+-.|
T Consensus 12 ~l~gLP~s~~gi~~~ 26 (76)
T 1tns_A 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 567888888887554
Done!