Query 031826
Match_columns 152
No_of_seqs 109 out of 128
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 09:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031826.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031826hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpma_ a.6.1.7 (A:) mu transp 20.8 22 0.0016 22.1 1.8 16 3-18 12-27 (69)
2 d1tnsa_ a.6.1.7 (A:) mu transp 16.0 33 0.0024 21.6 1.8 15 3-17 12-26 (76)
3 d1t4ba2 d.81.1.1 (A:134-354) A 14.3 19 0.0014 26.8 0.3 22 68-89 197-218 (221)
4 d2hjsa2 d.81.1.1 (A:130-319) U 9.7 29 0.0021 25.2 -0.1 21 69-89 167-187 (190)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.6 1.8E+02 0.013 20.1 4.1 58 36-93 28-89 (348)
6 d1mb4a2 d.81.1.1 (A:133-354) A 7.6 32 0.0024 25.5 -0.6 21 69-89 199-219 (222)
7 d1uxya1 d.145.1.2 (A:3-200) Ur 5.6 93 0.0068 21.9 1.0 12 3-14 104-115 (198)
8 d2gz1a2 d.81.1.1 (A:128-329) A 5.5 73 0.0053 22.8 0.4 20 70-89 180-199 (202)
9 d2c4fl1 g.3.11.1 (L:46-82) Fac 4.4 82 0.0059 16.7 -0.0 11 111-122 1-11 (37)
10 d1ppje2 f.23.12.1 (E:1-69) Iro 4.4 4E+02 0.029 15.9 4.8 24 41-64 33-57 (69)
No 1
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=20.85 E-value=22 Score=22.13 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=12.9
Q ss_pred CCCCCCCCchhHHHHH
Q 031826 3 VFAGTPGTATGLFLRI 18 (152)
Q Consensus 3 ~~~g~pgt~~gL~LR~ 18 (152)
++||+|+|..|+-.|.
T Consensus 12 gLpglP~s~~gv~~~A 27 (69)
T d1qpma_ 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 5799999999887553
No 2
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=16.00 E-value=33 Score=21.56 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.0
Q ss_pred CCCCCCCCchhHHHH
Q 031826 3 VFAGTPGTATGLFLR 17 (152)
Q Consensus 3 ~~~g~pgt~~gL~LR 17 (152)
++||+|+|..|+-.|
T Consensus 12 gLpglP~s~~gv~~~ 26 (76)
T d1tnsa_ 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 578999999887654
No 3
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=14.31 E-value=19 Score=26.77 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=17.5
Q ss_pred HHhhccCCCcceeeeeeehhHH
Q 031826 68 IVQKKVLHSPVLISLFVVGDWV 89 (152)
Q Consensus 68 ll~k~~l~~~~~~~l~~vGD~V 89 (152)
-+.|++...+..++++++||++
T Consensus 197 GRIR~D~~~~~~l~lw~v~DNL 218 (221)
T d1t4ba2 197 GRLRKLNMGPEFLSAFTVGDQL 218 (221)
T ss_dssp EEEEECTTCTTEEEEEEEEETT
T ss_pred ecccccCCCCCEEEEEEEeccc
Confidence 3456677788899999999985
No 4
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.67 E-value=29 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.9
Q ss_pred HhhccCCCcceeeeeeehhHH
Q 031826 69 VQKKVLHSPVLISLFVVGDWV 89 (152)
Q Consensus 69 l~k~~l~~~~~~~l~~vGD~V 89 (152)
+.|++..++..+.++++||++
T Consensus 167 RiR~d~~~~~~l~~w~v~Dnl 187 (190)
T d2hjsa2 167 RVRAGQADPCQVNLWIVSDNV 187 (190)
T ss_dssp EEEECSSCTTEEEEEEEECCC
T ss_pred eeEcCCCCCCEEEEEEEeCCc
Confidence 456677788889999999974
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.59 E-value=1.8e+02 Score=20.07 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=28.7
Q ss_pred CCCchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCcceeeee--eehhHHHHHH
Q 031826 36 SFFNFTAFCYLI--AAMGLQVIWSFGLALIDAYAIVQKKVLHSPVLISLF--VVGDWVTATL 93 (152)
Q Consensus 36 ~F~s~TaF~YLv--a~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~--~vGD~V~a~L 93 (152)
+++..+.+-|-+ ..+++.++-++..=++=++.+.++|.+|++...-+. .+.|-.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~ 89 (348)
T d1u19a_ 28 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89 (348)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 344444433333 333333334433334446677777778877433333 5667654433
No 6
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=7.62 E-value=32 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.0
Q ss_pred HhhccCCCcceeeeeeehhHH
Q 031826 69 VQKKVLHSPVLISLFVVGDWV 89 (152)
Q Consensus 69 l~k~~l~~~~~~~l~~vGD~V 89 (152)
+.|++...+..+.++++||++
T Consensus 199 RiR~d~~~~~~l~~wvv~DNL 219 (222)
T d1mb4a2 199 RLRKMAMGDDFLNAFTVGDQL 219 (222)
T ss_dssp EEEEETTEEEEEEEEEEEETT
T ss_pred cCEecCCCCCEEEEEEEeccc
Confidence 345556667889999999985
No 7
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.55 E-value=93 Score=21.89 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=7.8
Q ss_pred CCCCCCCCchhH
Q 031826 3 VFAGTPGTATGL 14 (152)
Q Consensus 3 ~~~g~pgt~~gL 14 (152)
-+.|-|||.||.
T Consensus 104 ~l~gIPGtvGGa 115 (198)
T d1uxya1 104 NLALIPGCVGSS 115 (198)
T ss_dssp GGTTCCSBGGGT
T ss_pred hhcccccccchh
Confidence 345777777764
No 8
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=5.46 E-value=73 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.0
Q ss_pred hhccCCCcceeeeeeehhHH
Q 031826 70 QKKVLHSPVLISLFVVGDWV 89 (152)
Q Consensus 70 ~k~~l~~~~~~~l~~vGD~V 89 (152)
.|++.-.+..+.++++||++
T Consensus 180 iR~d~~~~~~l~~w~v~DNl 199 (202)
T d2gz1a2 180 IRKDLDAEKGIHMWVVSDNL 199 (202)
T ss_dssp EEECSSCTTEEEEEEEECTT
T ss_pred eEcCCCCCCEEEEEEEeccc
Confidence 34556667789999999985
No 9
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.43 E-value=82 Score=16.66 Aligned_cols=11 Identities=36% Similarity=0.842 Sum_probs=6.3
Q ss_pred CCCCCCCcccch
Q 031826 111 DLGHCSVDNECQ 122 (152)
Q Consensus 111 d~~~C~~~~~C~ 122 (152)
|.|.|.. |+|.
T Consensus 1 D~d~C~~-~PC~ 11 (37)
T d2c4fl1 1 DGDQCAS-SPCQ 11 (37)
T ss_dssp TCCGGGG-CCCC
T ss_pred CcccCCC-CCCC
Confidence 4556666 6654
No 10
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.36 E-value=4e+02 Score=15.90 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=14.0
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHH
Q 031826 41 TAFCYLI-AAMGLQVIWSFGLALID 64 (152)
Q Consensus 41 TaF~YLv-a~~~Lq~lwSl~la~~d 64 (152)
.+|-||+ +.+++...|..=-.+.|
T Consensus 33 k~fsYl~~g~~~v~~ay~AK~~V~~ 57 (69)
T d1ppje2 33 KGFSYLVTATTTVGVAYAAKNVVSQ 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhhhhHHHHHHHHHHHHHHH
Confidence 4888987 45555555654444333
Done!