Query 031827
Match_columns 152
No_of_seqs 155 out of 1602
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3135 1,4-benzoquinone reduc 100.0 1.6E-30 3.4E-35 186.1 13.5 150 1-150 50-202 (203)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 2.8E-28 6E-33 182.7 15.9 142 6-148 55-197 (197)
3 PRK03767 NAD(P)H:quinone oxido 100.0 8.7E-28 1.9E-32 180.3 16.9 137 13-150 63-200 (200)
4 COG0655 WrbA Multimeric flavod 99.9 3.7E-22 8E-27 150.5 12.9 143 6-149 63-206 (207)
5 PRK05569 flavodoxin; Provision 99.7 6.6E-16 1.4E-20 109.5 11.8 101 9-142 38-140 (141)
6 PRK06242 flavodoxin; Provision 99.7 4E-16 8.7E-21 111.6 9.6 111 14-144 38-149 (150)
7 PRK05568 flavodoxin; Provision 99.7 1.4E-15 2.9E-20 108.0 11.6 102 9-143 38-141 (142)
8 PRK11921 metallo-beta-lactamas 99.6 8.9E-16 1.9E-20 125.8 10.0 99 14-145 295-393 (394)
9 PF03358 FMN_red: NADPH-depend 99.6 1.9E-16 4E-21 113.4 5.3 88 5-95 57-144 (152)
10 PRK05452 anaerobic nitric oxid 99.6 1.9E-15 4.2E-20 126.6 10.1 98 15-146 300-397 (479)
11 PRK06756 flavodoxin; Provision 99.6 6.7E-15 1.4E-19 105.3 10.8 102 14-144 44-146 (148)
12 TIGR01753 flav_short flavodoxi 99.6 8.1E-15 1.8E-19 103.2 10.7 104 9-142 35-140 (140)
13 TIGR03566 FMN_reduc_MsuE FMN r 99.6 6.9E-15 1.5E-19 108.1 8.3 115 8-146 58-172 (174)
14 PRK10569 NAD(P)H-dependent FMN 99.6 2.6E-14 5.7E-19 106.7 10.5 117 8-147 56-174 (191)
15 PRK06703 flavodoxin; Provision 99.5 6.4E-14 1.4E-18 100.6 10.6 109 11-148 40-150 (151)
16 TIGR03567 FMN_reduc_SsuE FMN r 99.5 3.8E-14 8.2E-19 103.9 7.1 114 8-142 55-169 (171)
17 PRK07308 flavodoxin; Validated 99.5 2.3E-13 5.1E-18 97.1 10.3 107 8-143 37-144 (146)
18 COG0426 FpaA Uncharacterized f 99.5 7.8E-14 1.7E-18 113.0 8.3 104 6-143 285-388 (388)
19 PRK00170 azoreductase; Reviewe 99.4 3.6E-13 7.7E-18 100.6 7.7 85 7-92 75-170 (201)
20 TIGR02690 resist_ArsH arsenica 99.4 2.2E-12 4.9E-17 98.0 11.1 119 14-149 85-204 (219)
21 PRK01355 azoreductase; Reviewe 99.4 5.7E-12 1.2E-16 94.5 10.1 85 7-92 66-164 (199)
22 PRK09267 flavodoxin FldA; Vali 99.3 3.1E-11 6.8E-16 88.1 12.0 125 10-143 37-165 (169)
23 PRK13556 azoreductase; Provisi 99.3 1.8E-11 3.9E-16 92.3 10.3 79 14-92 84-176 (208)
24 PRK09739 hypothetical protein; 99.3 7.3E-12 1.6E-16 93.8 5.7 61 7-68 68-132 (199)
25 PRK13555 azoreductase; Provisi 99.2 1.7E-10 3.6E-15 87.3 11.6 76 14-89 84-173 (208)
26 COG0431 Predicted flavoprotein 99.2 5.1E-11 1.1E-15 88.4 7.2 76 14-94 62-137 (184)
27 PRK12359 flavodoxin FldB; Prov 99.1 1.3E-09 2.8E-14 80.1 11.8 128 8-143 34-166 (172)
28 PF02525 Flavodoxin_2: Flavodo 99.1 2.1E-10 4.6E-15 85.6 7.3 80 14-93 73-173 (199)
29 PRK04930 glutathione-regulated 99.1 1.3E-09 2.7E-14 81.0 10.8 86 7-93 50-150 (184)
30 PRK00871 glutathione-regulated 99.0 2.1E-09 4.6E-14 79.3 9.1 80 14-93 50-142 (176)
31 COG1182 AcpD Acyl carrier prot 99.0 2.9E-09 6.2E-14 79.4 9.6 77 14-90 82-171 (202)
32 TIGR01752 flav_long flavodoxin 99.0 6.8E-09 1.5E-13 75.8 11.0 88 9-100 34-124 (167)
33 PRK06934 flavodoxin; Provision 99.0 1.5E-09 3.2E-14 82.7 7.0 60 14-82 124-183 (221)
34 KOG4530 Predicted flavoprotein 98.9 3.3E-09 7.2E-14 76.1 6.2 69 14-90 81-149 (199)
35 PRK09271 flavodoxin; Provision 98.9 8.7E-09 1.9E-13 74.7 8.2 97 14-146 46-148 (160)
36 PF12682 Flavodoxin_4: Flavodo 98.9 3.7E-09 8.1E-14 76.5 4.9 61 14-83 68-128 (156)
37 PRK07116 flavodoxin; Provision 98.8 2E-08 4.4E-13 72.8 7.2 60 14-82 71-130 (160)
38 COG2249 MdaB Putative NADPH-qu 98.8 7.2E-08 1.6E-12 71.9 9.1 61 7-68 56-125 (189)
39 PF12724 Flavodoxin_5: Flavodo 98.6 1.4E-07 2.9E-12 67.2 6.5 50 14-68 38-87 (143)
40 TIGR01754 flav_RNR ribonucleot 98.6 4.7E-07 1E-11 64.1 8.3 63 15-84 46-111 (140)
41 PRK11104 hemG protoporphyrinog 98.5 1.3E-07 2.7E-12 69.8 4.0 48 14-66 41-88 (177)
42 PF00258 Flavodoxin_1: Flavodo 98.3 1.3E-06 2.8E-11 61.6 4.7 82 14-95 40-126 (143)
43 PRK09004 FMN-binding protein M 98.3 9.1E-06 2E-10 58.2 8.7 79 14-94 41-120 (146)
44 PF12641 Flavodoxin_3: Flavodo 98.1 4.2E-05 9.1E-10 55.6 10.0 42 17-67 37-78 (160)
45 COG0716 FldA Flavodoxins [Ener 97.9 0.00011 2.4E-09 52.6 9.1 102 16-143 45-149 (151)
46 PRK08105 flavodoxin; Provision 97.7 0.0001 2.3E-09 52.8 6.0 74 18-93 47-121 (149)
47 PRK05723 flavodoxin; Provision 97.2 0.0065 1.4E-07 43.7 10.0 81 12-93 38-122 (151)
48 PRK10953 cysJ sulfite reductas 97.2 0.0033 7.2E-08 54.6 9.5 85 8-93 97-182 (600)
49 COG4635 HemG Flavodoxin [Energ 97.0 0.00032 7E-09 50.7 1.7 67 16-87 44-112 (175)
50 TIGR01931 cysJ sulfite reducta 96.9 0.0063 1.4E-07 52.9 9.2 85 8-93 94-179 (597)
51 PRK03600 nrdI ribonucleotide r 96.6 0.0087 1.9E-07 42.3 6.1 43 16-65 35-82 (134)
52 TIGR00333 nrdI ribonucleoside- 96.3 0.068 1.5E-06 37.3 9.0 39 16-65 33-72 (125)
53 PRK02551 flavoprotein NrdI; Pr 79.7 13 0.00029 26.7 7.1 42 17-65 51-103 (154)
54 PF01210 NAD_Gly3P_dh_N: NAD-d 79.1 3.1 6.7E-05 29.7 3.7 68 14-92 64-131 (157)
55 COG1780 NrdI Protein involved 78.0 16 0.00034 26.0 6.7 42 17-65 37-83 (141)
56 PF13344 Hydrolase_6: Haloacid 73.0 2.9 6.4E-05 27.6 2.0 57 18-91 3-59 (101)
57 PRK10834 vancomycin high tempe 69.0 15 0.00032 28.6 5.3 69 15-88 40-111 (239)
58 PF07972 Flavodoxin_NdrI: NrdI 63.2 7.2 0.00016 27.0 2.4 42 17-65 35-81 (122)
59 TIGR01019 sucCoAalpha succinyl 61.0 65 0.0014 25.6 7.8 66 13-95 54-122 (286)
60 COG1445 FrwB Phosphotransferas 55.2 12 0.00026 25.9 2.4 21 9-29 46-66 (122)
61 PRK08818 prephenate dehydrogen 54.4 15 0.00033 30.3 3.3 37 4-46 36-72 (370)
62 cd03140 GATase1_PfpI_3 Type 1 54.3 22 0.00048 25.4 3.8 44 14-64 53-99 (170)
63 TIGR00333 nrdI ribonucleoside- 54.1 36 0.00078 23.6 4.7 65 29-95 1-73 (125)
64 PRK12490 6-phosphogluconate de 52.9 1.1E+02 0.0024 24.0 8.2 61 20-96 60-121 (299)
65 PRK00961 H(2)-dependent methyl 52.8 1.2E+02 0.0026 24.4 8.8 31 14-46 136-167 (342)
66 PF02153 PDH: Prephenate dehyd 52.7 33 0.00071 26.5 4.8 62 14-92 40-101 (258)
67 cd06259 YdcF-like YdcF-like. Y 48.4 68 0.0015 22.1 5.5 63 22-88 3-65 (150)
68 PRK05678 succinyl-CoA syntheta 47.3 1.4E+02 0.0031 23.7 7.8 66 13-95 56-124 (291)
69 cd03141 GATase1_Hsp31_like Typ 46.2 38 0.00082 25.5 4.1 41 17-64 88-131 (221)
70 KOG2728 Uncharacterized conser 45.9 34 0.00075 26.9 3.8 34 27-66 7-40 (302)
71 TIGR01723 hmd_TIGR 5,10-methen 42.0 1.9E+02 0.004 23.5 8.5 31 14-46 134-165 (340)
72 PRK09393 ftrA transcriptional 41.7 37 0.00081 26.9 3.7 45 14-65 70-115 (322)
73 TIGR02717 AcCoA-syn-alpha acet 41.6 1.7E+02 0.0037 24.6 7.7 63 20-95 65-129 (447)
74 KOG0057 Mitochondrial Fe/S clu 40.5 47 0.001 29.1 4.2 38 53-93 375-412 (591)
75 PF09822 ABC_transp_aux: ABC-t 39.3 59 0.0013 25.1 4.4 69 14-91 191-265 (271)
76 PF06283 ThuA: Trehalose utili 39.2 75 0.0016 23.6 4.8 41 6-46 39-79 (217)
77 PRK15438 erythronate-4-phospha 39.1 2.2E+02 0.0049 23.6 7.9 73 12-93 72-145 (378)
78 TIGR01383 not_thiJ DJ-1 family 38.6 34 0.00074 24.3 2.8 44 14-64 56-104 (179)
79 COG0078 ArgF Ornithine carbamo 38.3 1.7E+02 0.0036 23.7 6.7 56 52-140 149-204 (310)
80 PF10087 DUF2325: Uncharacteri 38.3 71 0.0015 20.6 4.0 40 14-63 43-82 (97)
81 TIGR01768 GGGP-family geranylg 38.2 1.8E+02 0.004 22.3 8.1 42 3-46 6-52 (223)
82 PF06554 Olfactory_mark: Olfac 38.2 36 0.00077 24.1 2.6 18 131-148 108-125 (151)
83 PRK00257 erythronate-4-phospha 37.6 2.2E+02 0.0049 23.6 7.7 73 12-93 72-145 (381)
84 COG0386 BtuE Glutathione perox 37.4 75 0.0016 23.1 4.2 42 53-95 22-65 (162)
85 COG0061 nadF NAD kinase [Coenz 36.2 21 0.00045 28.2 1.4 12 18-29 164-175 (281)
86 cd03138 GATase1_AraC_2 AraC tr 36.2 44 0.00095 24.2 3.1 44 14-64 64-112 (195)
87 PRK05752 uroporphyrinogen-III 35.7 51 0.0011 25.2 3.5 27 14-47 50-76 (255)
88 PRK09599 6-phosphogluconate de 35.4 1.2E+02 0.0026 23.8 5.6 61 20-96 60-121 (301)
89 PRK10444 UMP phosphatase; Prov 35.3 56 0.0012 25.1 3.6 56 18-90 6-61 (248)
90 COG1587 HemD Uroporphyrinogen- 34.9 51 0.0011 25.2 3.3 43 14-64 45-87 (248)
91 KOG1159 NADP-dependent flavopr 34.2 96 0.0021 26.9 5.0 83 9-91 37-121 (574)
92 cd03556 L-fucose_isomerase L-f 33.9 3.1E+02 0.0068 24.2 8.1 15 19-33 73-87 (584)
93 PRK12439 NAD(P)H-dependent gly 33.8 2.3E+02 0.005 22.8 7.1 27 15-47 73-99 (341)
94 PRK03958 tRNA 2'-O-methylase; 33.4 65 0.0014 23.8 3.5 32 14-46 117-148 (176)
95 TIGR01089 fucI L-fucose isomer 32.8 3.5E+02 0.0076 24.0 8.3 15 19-33 76-90 (587)
96 cd03147 GATase1_Ydr533c_like T 32.6 54 0.0012 25.0 3.1 42 16-64 91-135 (231)
97 PRK14077 pnk inorganic polypho 32.1 27 0.00058 27.8 1.4 12 18-29 175-186 (287)
98 PRK05928 hemD uroporphyrinogen 30.7 86 0.0019 23.2 4.0 42 14-63 47-88 (249)
99 PRK01185 ppnK inorganic polyph 30.5 25 0.00055 27.7 1.0 12 18-29 156-167 (271)
100 PRK02649 ppnK inorganic polyph 30.5 29 0.00062 27.9 1.3 12 18-29 179-190 (305)
101 PRK03372 ppnK inorganic polyph 30.3 30 0.00065 27.8 1.4 12 18-29 183-194 (306)
102 cd03135 GATase1_DJ-1 Type 1 gl 30.1 49 0.0011 23.0 2.4 45 13-64 52-101 (163)
103 cd03148 GATase1_EcHsp31_like T 30.1 1E+02 0.0022 23.6 4.2 29 18-46 95-126 (232)
104 cd04161 Arl2l1_Arl13_like Arl2 30.1 1.3E+02 0.0029 20.9 4.7 48 15-65 62-109 (167)
105 PLN00125 Succinyl-CoA ligase [ 29.9 2.9E+02 0.0063 22.1 7.9 66 14-95 61-129 (300)
106 PRK14818 NADH dehydrogenase su 29.8 1.5E+02 0.0033 21.8 4.9 44 15-67 66-109 (173)
107 COG2242 CobL Precorrin-6B meth 29.7 2.2E+02 0.0048 21.3 5.8 69 8-95 92-161 (187)
108 PRK01911 ppnK inorganic polyph 29.6 26 0.00057 27.9 1.0 12 18-29 174-185 (292)
109 cd06578 HemD Uroporphyrinogen- 29.1 1E+02 0.0023 22.5 4.2 42 14-63 44-85 (239)
110 cd03136 GATase1_AraC_ArgR_like 29.1 80 0.0017 22.6 3.4 43 15-64 60-103 (185)
111 PRK04885 ppnK inorganic polyph 29.0 33 0.00071 26.9 1.4 12 18-29 146-157 (265)
112 PRK03501 ppnK inorganic polyph 29.0 32 0.0007 27.0 1.4 11 19-29 148-158 (264)
113 PRK02645 ppnK inorganic polyph 29.0 32 0.0007 27.4 1.4 11 19-29 178-188 (305)
114 cd01979 Pchlide_reductase_N Pc 28.9 2.7E+02 0.0059 22.9 6.9 78 7-91 104-184 (396)
115 COG0240 GpsA Glycerol-3-phosph 28.6 3E+02 0.0064 22.5 6.8 26 14-45 65-91 (329)
116 TIGR03376 glycerol3P_DH glycer 28.5 3.2E+02 0.007 22.2 9.8 26 15-46 78-103 (342)
117 PRK00561 ppnK inorganic polyph 28.4 31 0.00067 27.0 1.2 12 18-29 135-146 (259)
118 PRK14075 pnk inorganic polypho 28.3 34 0.00074 26.6 1.4 12 18-29 144-155 (256)
119 PRK01231 ppnK inorganic polyph 28.0 33 0.00072 27.3 1.3 12 18-29 173-184 (295)
120 PRK04539 ppnK inorganic polyph 28.0 34 0.00073 27.3 1.3 11 19-29 180-190 (296)
121 PRK11574 oxidative-stress-resi 27.7 81 0.0017 22.9 3.3 45 14-65 59-108 (196)
122 PRK02231 ppnK inorganic polyph 27.5 35 0.00077 26.9 1.4 11 19-29 155-165 (272)
123 PRK03708 ppnK inorganic polyph 27.5 36 0.00078 26.8 1.4 12 18-29 163-174 (277)
124 cd03139 GATase1_PfpI_2 Type 1 27.4 97 0.0021 21.9 3.6 44 14-64 57-102 (183)
125 cd04158 ARD1 ARD1 subfamily. 27.3 1.3E+02 0.0028 20.9 4.2 49 14-65 61-109 (169)
126 PRK13143 hisH imidazole glycer 26.7 64 0.0014 23.8 2.6 15 14-28 33-47 (200)
127 PRK04761 ppnK inorganic polyph 26.3 39 0.00085 26.2 1.4 11 19-29 133-143 (246)
128 CHL00023 ndhK NADH dehydrogena 26.3 1.8E+02 0.0039 22.4 4.9 43 16-67 68-110 (225)
129 PRK02155 ppnK NAD(+)/NADH kina 26.2 37 0.00081 26.9 1.3 12 18-29 174-185 (291)
130 cd03137 GATase1_AraC_1 AraC tr 25.9 1.1E+02 0.0023 21.9 3.6 45 14-65 59-105 (187)
131 PF11038 DGF-1_5: Dispersed ge 25.8 1.3E+02 0.0028 22.8 4.0 46 17-67 106-151 (278)
132 KOG2711 Glycerol-3-phosphate d 25.8 87 0.0019 25.9 3.3 33 9-48 96-128 (372)
133 cd03134 GATase1_PfpI_like A ty 25.8 1.1E+02 0.0023 21.4 3.6 40 18-64 61-102 (165)
134 TIGR01692 HIBADH 3-hydroxyisob 25.7 3.2E+02 0.0069 21.2 6.8 67 14-95 47-116 (288)
135 PF12694 MoCo_carrier: Putativ 25.5 1.5E+02 0.0034 21.2 4.2 66 10-91 54-119 (145)
136 COG0287 TyrA Prephenate dehydr 25.3 1.8E+02 0.0039 22.9 5.0 27 14-46 59-85 (279)
137 PRK10474 putative PTS system f 25.2 78 0.0017 20.3 2.5 20 10-29 29-48 (88)
138 COG3260 Ni,Fe-hydrogenase III 25.1 1.7E+02 0.0037 20.9 4.2 42 18-68 48-89 (148)
139 cd04101 RabL4 RabL4 (Rab-like4 24.9 1.3E+02 0.0028 20.5 3.8 46 15-65 71-116 (164)
140 cd00877 Ran Ran (Ras-related n 24.7 1.9E+02 0.004 20.1 4.6 47 14-65 67-113 (166)
141 PF01935 DUF87: Domain of unkn 24.6 86 0.0019 23.3 3.0 36 53-91 20-56 (229)
142 cd01862 Rab7 Rab7 subfamily. 24.6 1.6E+02 0.0035 20.1 4.3 52 14-65 67-118 (172)
143 cd03169 GATase1_PfpI_1 Type 1 24.5 1E+02 0.0022 22.0 3.3 39 19-64 76-116 (180)
144 cd01977 Nitrogenase_VFe_alpha 24.4 3.9E+02 0.0084 22.1 7.0 80 7-92 105-193 (415)
145 PRK07634 pyrroline-5-carboxyla 24.4 1.8E+02 0.0039 21.7 4.7 26 15-46 62-87 (245)
146 PF03446 NAD_binding_2: NAD bi 24.2 2.6E+02 0.0056 19.6 5.4 67 14-95 52-120 (163)
147 cd04124 RabL2 RabL2 subfamily. 24.1 1.3E+02 0.0029 20.7 3.7 47 14-65 67-113 (161)
148 smart00178 SAR Sar1p-like memb 23.7 1.5E+02 0.0032 21.1 4.0 47 16-65 81-127 (184)
149 PRK02842 light-independent pro 23.6 3.9E+02 0.0085 22.2 6.9 78 7-91 114-195 (427)
150 PF13380 CoA_binding_2: CoA bi 23.2 2.4E+02 0.0051 18.9 4.7 57 18-95 54-110 (116)
151 TIGR01282 nifD nitrogenase mol 23.0 1.9E+02 0.0042 24.5 5.1 36 52-95 331-366 (466)
152 KOG2178 Predicted sugar kinase 23.0 47 0.001 27.8 1.3 12 18-29 284-295 (409)
153 PF09314 DUF1972: Domain of un 22.8 1.2E+02 0.0027 22.4 3.4 15 70-84 17-31 (185)
154 COG1832 Predicted CoA-binding 22.6 1.9E+02 0.0042 20.6 4.1 35 55-93 15-49 (140)
155 PRK14813 NADH dehydrogenase su 22.6 2.1E+02 0.0045 21.5 4.5 43 17-68 65-107 (189)
156 cd04121 Rab40 Rab40 subfamily. 22.3 3.1E+02 0.0068 19.8 6.6 73 15-92 74-146 (189)
157 PRK04169 geranylgeranylglycery 22.3 3.7E+02 0.008 20.7 9.5 42 4-47 15-58 (232)
158 PRK06444 prephenate dehydrogen 22.2 80 0.0017 23.6 2.4 23 17-45 29-51 (197)
159 PRK08811 uroporphyrinogen-III 22.2 1.5E+02 0.0033 23.0 4.0 16 14-29 64-79 (266)
160 PF00071 Ras: Ras family; Int 22.2 2.5E+02 0.0053 19.0 4.8 74 15-92 67-140 (162)
161 TIGR00829 FRU PTS system, fruc 22.1 97 0.0021 19.8 2.4 20 10-29 43-62 (85)
162 COG3643 Glutamate formiminotra 21.9 1.5E+02 0.0033 23.3 3.8 21 125-145 99-119 (302)
163 TIGR03709 PPK2_rel_1 polyphosp 21.8 1.3E+02 0.0028 23.7 3.5 38 56-93 53-90 (264)
164 COG1646 Predicted phosphate-bi 21.6 4E+02 0.0086 20.8 9.1 125 3-142 22-163 (240)
165 TIGR00872 gnd_rel 6-phosphoglu 21.5 4E+02 0.0087 20.8 8.6 64 17-96 57-120 (298)
166 COG0473 LeuB Isocitrate/isopro 21.4 46 0.001 27.3 1.0 22 8-29 54-75 (348)
167 PRK14804 ornithine carbamoyltr 21.3 2.7E+02 0.0058 22.4 5.3 59 26-91 119-181 (311)
168 TIGR00683 nanA N-acetylneurami 21.2 2.1E+02 0.0045 22.5 4.7 28 19-46 96-123 (290)
169 PRK08250 glutamine amidotransf 21.0 1.3E+02 0.0029 22.9 3.4 15 16-30 42-57 (235)
170 PF11382 DUF3186: Protein of u 21.0 2.2E+02 0.0049 22.7 4.8 50 39-92 66-115 (308)
171 COG0677 WecC UDP-N-acetyl-D-ma 20.9 74 0.0016 26.8 2.1 20 14-33 79-98 (436)
172 PRK03378 ppnK inorganic polyph 20.9 55 0.0012 26.0 1.3 12 18-29 174-185 (292)
173 TIGR01505 tartro_sem_red 2-hyd 20.8 4E+02 0.0087 20.6 6.8 70 14-95 50-119 (291)
174 PRK06975 bifunctional uroporph 20.6 1.2E+02 0.0026 27.1 3.4 27 14-47 50-76 (656)
175 smart00175 RAB Rab subfamily o 20.6 2.8E+02 0.006 18.6 6.7 74 14-91 67-140 (164)
176 PF00919 UPF0004: Uncharacteri 20.4 2.4E+02 0.0052 18.4 4.1 33 15-47 32-64 (98)
177 cd04162 Arl9_Arfrp2_like Arl9/ 20.3 2.6E+02 0.0056 19.4 4.6 47 14-65 62-108 (164)
178 TIGR01458 HAD-SF-IIA-hyp3 HAD- 20.2 2E+02 0.0042 22.1 4.2 59 18-89 6-64 (257)
No 1
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=186.05 Aligned_cols=150 Identities=77% Similarity=1.193 Sum_probs=139.8
Q ss_pred CCCCCCC-CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHH
Q 031827 1 MGAGPKS-DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTA 79 (152)
Q Consensus 1 ~~~~~~~-d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~ 79 (152)
|.++|++ |.|.++.+.+.++|+++||.|+-||++++|+|+|+|+...+|..+.|.||++++|.|+|..+||+|.+...-
T Consensus 50 m~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta 129 (203)
T KOG3135|consen 50 MKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTA 129 (203)
T ss_pred hcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHH
Confidence 5678885 999999999999999999999999999999999999999999999999999999999997778899888888
Q ss_pred HHHHHHcCcEEecCCCc-CCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 80 ITQLVHHGMIFVPIGYT-FGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 80 ~~~l~~~g~~~v~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
+..|.++||++|+.+|. .+.....+++|++|++||++++++ |+.+.|++-++++++..|+.+++.+++|+.
T Consensus 130 ~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 130 ITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred HHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 88999999999999997 555666788899999999999999 999999999999999999999999999975
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.96 E-value=2.8e-28 Score=182.74 Aligned_cols=142 Identities=54% Similarity=0.877 Sum_probs=123.8
Q ss_pred CCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031827 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 6 ~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~ 85 (152)
+++.+.++.+++.+||+||||||+|+++++++||.|+|++..+|....+.||++++|+|+||.+|+.+.++.++...+.+
T Consensus 55 ~~~~~~~~~~~l~~aD~ii~GSPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~ 134 (197)
T TIGR01755 55 DQTAPVATPQELADYDAIIFGTPTRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLH 134 (197)
T ss_pred ccCCccCCHHHHHHCCEEEEEecccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 44566667799999999999999999999999999999999888767899999999999999878888899999999999
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031827 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~~~~~ 148 (152)
+||.+|+.++. |........++++++||+.++.+ +++..|++.+++.|+.+|+|||+.+++|
T Consensus 135 ~Gm~vv~~~~~-~~~~~~~~~~~gg~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 135 HGMIIVPLPYA-AQEQMGVDEVRGGSPYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCCEEeCCCcc-cccccccccccCCCCcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998764 22222234457899999999987 6777899999999999999999999986
No 3
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.96 E-value=8.7e-28 Score=180.32 Aligned_cols=137 Identities=57% Similarity=0.904 Sum_probs=120.4
Q ss_pred CHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
+.+++.+||+||||||+|++++++++|.|+|++..+|....+.||++++|+++||.+|+.+.++.++...+..+||.+|+
T Consensus 63 ~~~~l~~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 63 TPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred CHHHHHhCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeC
Confidence 48999999999999999999999999999999998887778999999999999998788889999999999999999999
Q ss_pred CCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
.++.. ..+......++|++||+.++.+ +++..|+++|++.|+.+|+|+++++++|++
T Consensus 143 ~~~~~-~~~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 143 LPYAF-QGQMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCCcc-ccccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 87653 2221223357899999999987 677789999999999999999999999974
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.88 E-value=3.7e-22 Score=150.54 Aligned_cols=143 Identities=45% Similarity=0.667 Sum_probs=114.8
Q ss_pred CCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHH-hcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHH
Q 031827 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDA-TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV 84 (152)
Q Consensus 6 ~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~-l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~ 84 (152)
+|+++++ +++|.+||+|||||||||++++++||.|||| +..+|....+.+|+++.|++.+..+|+++.++..+..++.
T Consensus 63 dD~~~~i-~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~ 141 (207)
T COG0655 63 DDDMNEI-YEKLLEADGIIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFL 141 (207)
T ss_pred cccHHHH-HHHHHHCCEEEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHH
Confidence 3557888 9999999999999999999999999999999 7778877789999999999998777777778999999999
Q ss_pred HcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031827 85 HHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~ 149 (152)
+++|.+++.++.....-........|.++++...+...-..+.+.+++.++.+++++++.+.++.
T Consensus 142 ~~~~~~v~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 142 HHGMIVVGLGYGNAVVGSGVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred HcCCeEecccccccccCcccccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998776531110001124678888888776622223777889999999999998887764
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.68 E-value=6.6e-16 Score=109.52 Aligned_cols=101 Identities=22% Similarity=0.204 Sum_probs=80.4
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCCch--HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEADGILLGFPTRFGMMA--AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~--~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+....++.+||+||||||+|+++++ ++++.|+|++... .++||++++|+|+||..+. .+..+...+...
T Consensus 38 ~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~----~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~ 110 (141)
T PRK05569 38 VADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLT----PNENKKCILFGSYGWDNGE---FMKLWKDRMKDY 110 (141)
T ss_pred CCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhcc----CcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHC
Confidence 344456799999999999999999864 6899999998642 4689999999999875322 466677777888
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la 142 (152)
|+++++. +.+ ...|+++++++|+++|++|+
T Consensus 111 g~~~~~~-~~~-------------------------~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 111 GFNVIGD-LAV-------------------------NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred CCeEeee-EEE-------------------------ccCCCHHHHHHHHHHHHHHh
Confidence 9998864 221 14699999999999999986
No 6
>PRK06242 flavodoxin; Provisional
Probab=99.67 E-value=4e-16 Score=111.56 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=82.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
..++.++|.||||||+|+++++++++.|+|++. .+.||++++|+|+||..++. ...+...+...|+.+++.
T Consensus 38 ~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 38 PEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGE 108 (150)
T ss_pred cccHhHCCEEEEeCchhcCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999999984 35899999999998854332 677888888899999874
Q ss_pred CCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHH
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~ 144 (152)
+.. .+-..++.....+ .....|++++++.|+++|+++++.
T Consensus 109 -~~~----------~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 109 -FSC----------KGFDTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred -Eec----------CCcccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 221 1111111111101 112569999999999999998753
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.67 E-value=1.4e-15 Score=107.95 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCCch--HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEADGILLGFPTRFGMMA--AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~--~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+....++.++|+||||||+|+++++ +.++.|++++.. .++||++++|+++||..+ .....+...+...
T Consensus 38 ~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~-----~~~~k~~~~f~t~G~~~~---~~~~~~~~~l~~~ 109 (142)
T PRK05568 38 VSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISS-----LVKGKKLVLFGSYGWGDG---EWMRDWVERMEGY 109 (142)
T ss_pred CCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhh-----hhCCCEEEEEEccCCCCC---hHHHHHHHHHHHC
Confidence 344446689999999999999999984 689999999853 568999999999987422 3467777788889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
|+++++.++.. + ..|+++++++|+++|++|++
T Consensus 110 g~~~~~~~~~~----------~---------------~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 110 GANLVNEGLIV----------N---------------NTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred CCEEeCCcEEE----------e---------------cCCCHHHHHHHHHHHHHHHh
Confidence 99999875432 1 45899999999999999864
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.65 E-value=8.9e-16 Score=125.85 Aligned_cols=99 Identities=23% Similarity=0.221 Sum_probs=82.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+||||||||++++.+.++.|++.+.. ..++||++++|+|+||. |+ +++.+.+.|...|+.+++.
T Consensus 295 ~~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~----~~~~~K~~a~FGsygw~-g~---a~~~~~~~l~~~g~~~v~~ 366 (394)
T PRK11921 295 ITEVFKSKAILVGSSTINRGILSSTAAILEEIKG----LGFKNKKAAAFGSYGWS-GE---SVKIITERLKKAGFEIVND 366 (394)
T ss_pred HHHHHhCCEEEEECCCcCccccHHHHHHHHHhhc----cCcCCCEEEEEecCCCc-cH---HHHHHHHHHHHCCCEEccC
Confidence 4456789999999999999999999999999875 36899999999999884 33 4677888888999999987
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~ 145 (152)
++.+ + ..|+++++++|+++|++|++.+
T Consensus 367 ~~~~----------~---------------~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 367 GIRE----------L---------------WNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred cEEE----------E---------------eCCCHHHHHHHHHHHHHHHHhh
Confidence 6542 1 4589999999999999998643
No 9
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.64 E-value=1.9e-16 Score=113.44 Aligned_cols=88 Identities=34% Similarity=0.484 Sum_probs=72.9
Q ss_pred CCCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHH
Q 031827 5 PKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV 84 (152)
Q Consensus 5 ~~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~ 84 (152)
.+|++.++ .+++.+||+|||+||+|+++++++||+||||+.. +....+.||++++++++|+.. +...+..++...+.
T Consensus 57 ~~d~~~~~-~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~-g~~~~~~~l~~~~~ 133 (152)
T PF03358_consen 57 IPDDVQEL-YDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRR-GGLRALEQLRQILD 133 (152)
T ss_dssp TSHHHHHH-HHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSS-TTHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhceecCCeEEEeecEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCc-HHHHHHHHHHHHHH
Confidence 45666667 8999999999999999999999999999999974 334689999999998886643 44567888888989
Q ss_pred HcCcEEecCCC
Q 031827 85 HHGMIFVPIGY 95 (152)
Q Consensus 85 ~~g~~~v~~~~ 95 (152)
.+||.+++..+
T Consensus 134 ~~~~~~~~~~~ 144 (152)
T PF03358_consen 134 YLGMIVVPSGV 144 (152)
T ss_dssp HTTBEEECCSE
T ss_pred HCCCEEcCCcE
Confidence 99999998743
No 10
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.62 E-value=1.9e-15 Score=126.60 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=81.4
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCC
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIG 94 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~ 94 (152)
.++.+||+||||||||++++.++|+.|++.+..+ .++||++++|+|+||. |+ +++.+...|...|++++. +
T Consensus 300 ~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~~~----~l~gK~~~vFGSygw~-g~---a~~~~~~~l~~~g~~~~~-~ 370 (479)
T PRK05452 300 TNVFRSKGVLVGSSTMNNVMMPKIAGLLEEITGL----RFRNKRASAFGSHGWS-GG---AVDRLSTRLQDAGFEMSL-S 370 (479)
T ss_pred hHHhhCCEEEEECCccCCcchHHHHHHHHHhhcc----CcCCCEEEEEECCCcC-cH---HHHHHHHHHHHCCCEEec-c
Confidence 4445799999999999999999999999999753 6899999999999984 33 467788888889999974 4
Q ss_pred CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031827 95 YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~ 146 (152)
+.+ + ..|+++++++|+++|++|++.++
T Consensus 371 l~~----------~---------------~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 371 LKA----------K---------------WRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred EEE----------E---------------ecCCHHHHHHHHHHHHHHHHHHh
Confidence 332 1 56999999999999999997654
No 11
>PRK06756 flavodoxin; Provisional
Probab=99.62 E-value=6.7e-15 Score=105.32 Aligned_cols=102 Identities=26% Similarity=0.314 Sum_probs=83.8
Q ss_pred HHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..++.++|+||||||+|+ +.++..++.|++.+.. ..++||++++|+++++..++...++..+.+.|...|+++++
T Consensus 44 ~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~----~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~ 119 (148)
T PRK06756 44 ASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS----IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVL 119 (148)
T ss_pred HHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhc----CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcC
Confidence 568899999999999996 6677789999999864 36899999999997653344456788899999999999998
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~ 144 (152)
.+..+ ...|+++++++|+++|++|++.
T Consensus 120 ~~~~~-------------------------~~~p~~~d~~~~~~~~~~~~~~ 146 (148)
T PRK06756 120 EGLKV-------------------------ELTPEDEDVEKCLQFGAEFVKH 146 (148)
T ss_pred CCeEE-------------------------ecCCCHHHHHHHHHHHHHHHHh
Confidence 76432 1569999999999999999764
No 12
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.61 E-value=8.1e-15 Score=103.19 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=82.7
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCC-ch-HHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEADGILLGFPTRFGM-MA-AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~-~~-~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+....++.++|.||||||||+++ ++ +.++.|++++.. ..++||++++|+++||... ...+...+...|...
T Consensus 35 ~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~ 109 (140)
T TIGR01753 35 VADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEA 109 (140)
T ss_pred cccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHC
Confidence 4455567899999999999999865 65 799999999864 3579999999999877431 235677888888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la 142 (152)
|+.++..++.. ...|+++++++|+++|++|+
T Consensus 110 g~~~v~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 110 GATIIAEGLKV-------------------------DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred CCEEecCCeee-------------------------ecCCCHHHHHHHHHHHHHhC
Confidence 99999865432 14588999999999999874
No 13
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.58 E-value=6.9e-15 Score=108.06 Aligned_cols=115 Identities=23% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g 87 (152)
++.++ .+++.+||+|||+||+||+++++++|+|||++.. ..+.||++++++++|... +.......+...+...+
T Consensus 58 ~~~~~-~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~ 131 (174)
T TIGR03566 58 DAERI-LQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQ 131 (174)
T ss_pred HHHHH-HHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhC
Confidence 33444 7899999999999999999999999999999863 468999999988876432 22233334555666677
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031827 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~ 146 (152)
+.+++...... ...+. ++ ...+++..++++.+.+.+++.+.
T Consensus 132 ~~~~~~~~~~~----------------~~~~~-~g-~l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 132 ALTLPTGVYAS----------------DADFA-DY-RLASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred cccccceEEEE----------------hhhhc-cc-cccCHHHHHHHHHHHHHHHHHhc
Confidence 77665322110 00111 12 23577778899999988887664
No 14
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.57 E-value=2.6e-14 Score=106.66 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=84.3
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchH-HHHHHHHHHc
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHH 86 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~-~~~~~~l~~~ 86 (152)
++..+ .++|.+||+|||+||+||+++|+.+|+|||++.. ..|.||++++++++|.. +....+ ..+...+..+
T Consensus 56 ~~~~~-~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~~--~~~~~~~~~lr~~l~~l 128 (191)
T PRK10569 56 ALKTF-TEQLAQADGLIVATPVYKASFSGALKTLLDLLPE----RALEHKVVLPLATGGSV--AHMLAVDYALKPVLSAL 128 (191)
T ss_pred HHHHH-HHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCCc--hhHHHHHHHHHHHHHHc
Confidence 33344 7899999999999999999999999999999843 57899999999887543 333445 4555667778
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~~~~ 147 (152)
|+.+++.+...... .... |.....+++..++.+++.+++++.++.
T Consensus 129 ~a~~~~~~~~~~~~----------------~~~~~d~~~~~d~~~~~rl~~~~~~~~~~~~~ 174 (191)
T PRK10569 129 KAQEILHGVFADDS----------------QVIDYHHQPQFTPNLQTRLDEALETFWQALHR 174 (191)
T ss_pred CCeecCceEEEech----------------hhhccccccccCHHHHHHHHHHHHHHHHHHcc
Confidence 88887765432110 0110 112345888999999999999876543
No 15
>PRK06703 flavodoxin; Provisional
Probab=99.55 E-value=6.4e-14 Score=100.56 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=84.8
Q ss_pred CCCHHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 11 TITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+....++.++|.|||+||||. +.++..++.|++.+.. ..+++|++++|++++|..+....+...+.+.|...|+.
T Consensus 40 ~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~----~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~ 115 (151)
T PRK06703 40 GMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLEN----IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAE 115 (151)
T ss_pred hCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhc----CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCE
Confidence 334567899999999999994 7777789999999864 36789999999998764332235567788888999999
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 031827 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~-~e~~~~~~~lG~~la~~~~~~ 148 (152)
+++.++.+ . ..|+ ++++++|+++++++++.++.+
T Consensus 116 ~~~~~~~~----------~---------------~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 116 LVQEGLKI----------E---------------LAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred EcccCeEE----------e---------------cCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 99876442 1 3465 799999999999999776543
No 16
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.51 E-value=3.8e-14 Score=103.92 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=75.3
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchH-HHHHHHHHHc
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTP-LTAITQLVHH 86 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~-~~~~~~l~~~ 86 (152)
++..+ .+++.+||+|||+||+||+++|+.+|+|||++.. ..+.||++++++++|.. ++ ...+ ..+...+..+
T Consensus 55 ~~~~l-~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~~-~~-~~~~~~~l~~~l~~l 127 (171)
T TIGR03567 55 AIKAA-TAQVAQADGVVVATPVYKASYSGVLKALLDLLPQ----RALRGKVVLPIATGGSI-AH-LLAIDYALKPVLSAL 127 (171)
T ss_pred HHHHH-HHHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCch-hH-HHHHHHHHHHHHHHc
Confidence 44445 8899999999999999999999999999999852 47899999988776542 22 2223 2456666778
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la 142 (152)
|+.++...+.++.. . ..++.++....+++..+++++++++++
T Consensus 128 ~~~~~~~~v~~~~~-------~-------~~~d~~g~~~~d~~~~~~l~~~~~~~~ 169 (171)
T TIGR03567 128 GARHILPGVFALDS-------Q-------IERDEDGTLQLDEEIKERLDEALEDLV 169 (171)
T ss_pred CCccccceEEEEhh-------H-------hccccCCccccCHHHHHHHHHHHHHHH
Confidence 88654433221100 0 011112221146777788888887765
No 17
>PRK07308 flavodoxin; Validated
Probab=99.50 E-value=2.3e-13 Score=97.15 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=83.0
Q ss_pred CCCCCCHHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 8 DVPTITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
++.+....++.++|+|||+||||. +.++..++.|++.+.. ..++||++++|+++....++...+.+.+.+.|...
T Consensus 37 ~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~----~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~ 112 (146)
T PRK07308 37 ECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLAD----LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALT 112 (146)
T ss_pred ecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHc
Confidence 334445678899999999999997 7788899999999875 36899999999994322222234577787888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
|+.++...+.+ +..|++++++.|+++|++|++
T Consensus 113 g~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~~~~l~~ 144 (146)
T PRK07308 113 GATKGAESVKV-------------------------DLAAEDEDIERLEAFAEELAA 144 (146)
T ss_pred CCeEccCcEEE-------------------------eCCCCHHHHHHHHHHHHHHHh
Confidence 99998765432 145899999999999999874
No 18
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.50 E-value=7.8e-14 Score=112.97 Aligned_cols=104 Identities=27% Similarity=0.298 Sum_probs=87.3
Q ss_pred CCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031827 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 6 ~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~ 85 (152)
.+|.+++ .++|.+|++||+||||+++++++++..++-.+..+ ..++|++++|+|+||. |++ ...+.+.|..
T Consensus 285 ~~~~~eI-~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~----~~~~k~~~vfgS~GW~-g~a---v~~i~~~l~~ 355 (388)
T COG0426 285 DADPSEI-VEEILDAKGLVVGSPTINGGAHPPIQTALGYVLAL----APKNKLAGVFGSYGWS-GEA---VDLIEEKLKD 355 (388)
T ss_pred cCCHHHH-HHHHhhcceEEEecCcccCCCCchHHHHHHHHHhc----cCcCceEEEEeccCCC-Ccc---hHHHHHHHHh
Confidence 4577888 99999999999999999999999999999998763 6799999999999984 444 5557777788
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
.|+++...++.+ + ..|+++++++|+++|+.+++
T Consensus 356 ~g~~~~~~~i~v----------k---------------~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 356 LGFEFGFDGIEV----------K---------------FRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred cCcEEeccceEE----------E---------------ecCCHHHHHHHHHHHHHhcC
Confidence 899987655432 2 57999999999999999873
No 19
>PRK00170 azoreductase; Reviewed
Probab=99.44 E-value=3.6e-13 Score=100.60 Aligned_cols=85 Identities=21% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCCCCC--cch
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ--ETT 75 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~~gg~--~~~ 75 (152)
|++.++ .++|.+||+|||+||+||+++|+++|+||||+.... ..+.++||++.+++++|+..++. ...
T Consensus 75 d~~~~l-~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~ 153 (201)
T PRK00170 75 ALSDEL-LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMG 153 (201)
T ss_pred HHHHHH-HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchH
Confidence 344555 789999999999999999999999999999986421 02368999999999877532211 234
Q ss_pred HHHHHHHHHHcCcEEec
Q 031827 76 PLTAITQLVHHGMIFVP 92 (152)
Q Consensus 76 ~~~~~~~l~~~g~~~v~ 92 (152)
...+...+...|+..+.
T Consensus 154 ~~~~~~~~~~~G~~~~~ 170 (201)
T PRK00170 154 VPYLKTFLGFIGITDVE 170 (201)
T ss_pred HHHHHHHHHhcCCCceE
Confidence 44555555667777654
No 20
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.42 E-value=2.2e-12 Score=98.00 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=87.7
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc-cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~-~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+.+.+||++||+||.||+++++.+|++||.+...|. ...+.||++++++++|+. + +.+++..+...|..+++.+++
T Consensus 85 ~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~-~-g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 85 RQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS-Q-SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred HHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH-h-HHHHHHHHHHHHHHCCCcccc
Confidence 5788899999999999999999999999999987543 136899999999876543 2 456788888888889999887
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~ 149 (152)
....+... ...++.++ ...+++..+...++.+.+...++..+
T Consensus 163 ~~v~i~~a--------------~~~fd~~G-~l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 163 NQSSVAKA--------------FDEFDEAG-RMKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred chhhhhhh--------------HhhcCcCC-CCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 64332110 11122223 24567778888888888887776654
No 21
>PRK01355 azoreductase; Reviewed
Probab=99.37 E-value=5.7e-12 Score=94.49 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=62.7
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc--------c----cCCCCCCeEEEEEecCCCCCCC--
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW--------R----SQQLAGKPAGIFYSTGSQGGGQ-- 72 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~--------~----~~~l~gK~~~~~~s~g~~~gg~-- 72 (152)
+++..+ .+++.+||+|||+||+||+++|+++|+||||+.... . .+.++||++.+++++|...+..
T Consensus 66 ~~~~~~-~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~ 144 (199)
T PRK01355 66 EVSDKY-INQLKSVDKVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPW 144 (199)
T ss_pred hhHHHH-HHHHHhCCEEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCc
Confidence 455556 899999999999999999999999999999985321 0 1358899999999988543211
Q ss_pred cchHHHHHHHHHHcCcEEec
Q 031827 73 ETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 73 ~~~~~~~~~~l~~~g~~~v~ 92 (152)
......+...+...|+..+.
T Consensus 145 ~~~~~~l~~~~~~~G~~~~~ 164 (199)
T PRK01355 145 GSHTNYLEGTWEFLGAKVVD 164 (199)
T ss_pred cchHHHHHHHHHhcCCCcee
Confidence 23455556666667777654
No 22
>PRK09267 flavodoxin FldA; Validated
Probab=99.33 E-value=3.1e-11 Score=88.06 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=85.0
Q ss_pred CCCCHHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC---cchHHHHHHHHHH
Q 031827 10 PTITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ---ETTPLTAITQLVH 85 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~---~~~~~~~~~~l~~ 85 (152)
++....++.++|.||||+|+|+ +.+++.++.|++++.. ..|+||++++|++++.. +.. ..++..+.+.+..
T Consensus 37 ~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~----~~l~~k~vaifg~g~~~-~~~~~~~~~~~~l~~~l~~ 111 (169)
T PRK09267 37 AKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEE----IDFSGKKVALFGLGDQE-DYAEYFCDAMGTLYDIVEP 111 (169)
T ss_pred hhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEecCCCC-cchHHHHHHHHHHHHHHHH
Confidence 3344578899999999999996 8888999999998853 36899999999876432 222 3456777888888
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
.|+.+++.--..++.+.....++++.++|.. .+ .+..++..+ ++.+++.+.|..
T Consensus 112 ~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~-~d--~~~~~~~td-~~i~~w~~~i~~ 165 (169)
T PRK09267 112 RGATIVGHWPTDGYTFEASKAVDDGKFVGLA-LD--EDNQSELTD-ERIEAWVKQIKP 165 (169)
T ss_pred CCCEEECccCCCCccccccceeeCCEEEEEE-ec--CCCchhhhH-HHHHHHHHHHHH
Confidence 9999998622224444333445556666664 32 223344444 666777666554
No 23
>PRK13556 azoreductase; Provisional
Probab=99.32 E-value=1.8e-11 Score=92.34 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc-----c----cCCCCCCeEEEEEecCCCCCC-C----cchHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----R----SQQLAGKPAGIFYSTGSQGGG-Q----ETTPLTA 79 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~-----~----~~~l~gK~~~~~~s~g~~~gg-~----~~~~~~~ 79 (152)
.+++.+||.|||++|+||+++|+.+|+||||+.... . .+.+.+|++.+++++|+.... . ......+
T Consensus 84 ~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l 163 (208)
T PRK13556 84 LNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYV 163 (208)
T ss_pred HHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHH
Confidence 689999999999999999999999999999997541 1 135899999999998764321 1 1234456
Q ss_pred HHHHHHcCcEEec
Q 031827 80 ITQLVHHGMIFVP 92 (152)
Q Consensus 80 ~~~l~~~g~~~v~ 92 (152)
...+...|+..+.
T Consensus 164 ~~il~~~G~~~~~ 176 (208)
T PRK13556 164 ASMMGFFGVTNME 176 (208)
T ss_pred HHHHHhcCCCcee
Confidence 6666667777664
No 24
>PRK09739 hypothetical protein; Provisional
Probab=99.27 E-value=7.3e-12 Score=93.80 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc----ccCCCCCCeEEEEEecCCC
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~----~~~~l~gK~~~~~~s~g~~ 68 (152)
+++..+ .+++.+||.|||++|+||+++|+.+|.|||++.... ....+.||++.++.++|+.
T Consensus 68 ~~~~~~-~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 68 PEVHQL-YSELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred HHHHHH-HHHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 334444 789999999999999999999999999999985321 1235789999888887654
No 25
>PRK13555 azoreductase; Provisional
Probab=99.23 E-value=1.7e-10 Score=87.28 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=55.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCCCCC-----cchHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ-----ETTPLTA 79 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~~gg~-----~~~~~~~ 79 (152)
.+++.+||.|||++|+||+++|+.+|.|||++.... ..+.++||++.+++++|+...+. .....++
T Consensus 84 ~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl 163 (208)
T PRK13555 84 LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYV 163 (208)
T ss_pred HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHH
Confidence 678999999999999999999999999999987531 12468999999999987644332 1122344
Q ss_pred HHHHHHcCcE
Q 031827 80 ITQLVHHGMI 89 (152)
Q Consensus 80 ~~~l~~~g~~ 89 (152)
...|...|+.
T Consensus 164 ~~il~~~Gi~ 173 (208)
T PRK13555 164 TTVLGFWGIT 173 (208)
T ss_pred HHHHHhcCCC
Confidence 4444445554
No 26
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.20 E-value=5.1e-11 Score=88.42 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=65.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.++|.+||++||+||+||+++++.+|+.||.+.. ..+.+|++++++++|+.. +...+..++...+..+++..++.
T Consensus 62 ~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~----~~~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 62 REAIAAADGLIIATPEYNGSYPGALKNAIDWLSR----EALGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred HHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCH----hHhCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 6789999999999999999999999999999975 368999999999987653 44567788888888899999876
Q ss_pred C
Q 031827 94 G 94 (152)
Q Consensus 94 ~ 94 (152)
+
T Consensus 137 ~ 137 (184)
T COG0431 137 G 137 (184)
T ss_pred c
Confidence 5
No 27
>PRK12359 flavodoxin FldB; Provisional
Probab=99.13 E-value=1.3e-09 Score=80.11 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=87.2
Q ss_pred CCCCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHH
Q 031827 8 DVPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLV 84 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~--~~~~~~~~~~l~ 84 (152)
++.+...+++.++|.||||+||| .+.++..+..|++.+.. ..|+||++++|+++...+-+. ..++..+.+.+.
T Consensus 34 ~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~ 109 (172)
T PRK12359 34 NLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDD----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLA 109 (172)
T ss_pred EcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhh----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHH
Confidence 34455577899999999999998 67788899999998864 478999999999865421111 245567888888
Q ss_pred HcCcEEecCCCcCCCCCccccccc-cCC-CCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 85 HHGMIFVPIGYTFGAGMSEMEKVK-GGS-PYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~-~~~-~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
..|.++|+.--..+|.|...+.+. .|. +.|. +++.| ..+ +.--+++..+.+.|..
T Consensus 110 ~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl-~lD~~--nq~-~~t~~ri~~W~~~~~~ 166 (172)
T PRK12359 110 PKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGL-ALDEV--NQY-DLSDERIQQWCEQILL 166 (172)
T ss_pred hCCCeEEeeEeCCCcccccceeeEcCCCEEEEE-EEcCC--Cch-hhhHHHHHHHHHHHHH
Confidence 899999986556677777777664 333 6666 33321 111 2233555555555543
No 28
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.12 E-value=2.1e-10 Score=85.65 Aligned_cols=80 Identities=26% Similarity=0.245 Sum_probs=59.4
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCc---c--------ccCCCCCCeEEEEEecCCCC---C---CC----
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL---W--------RSQQLAGKPAGIFYSTGSQG---G---GQ---- 72 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~---~--------~~~~l~gK~~~~~~s~g~~~---g---g~---- 72 (152)
.+++.+||.|||++|+||+++|+.+|.||||+... + ..+.|+||++.+++|+|+.. + ..
T Consensus 73 ~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~ 152 (199)
T PF02525_consen 73 IEELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSM 152 (199)
T ss_dssp HHHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHH
T ss_pred HHHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCCh
Confidence 48899999999999999999999999999998421 1 13588999999999988651 1 11
Q ss_pred cchHHHHHHHHHHcCcEEecC
Q 031827 73 ETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 73 ~~~~~~~~~~l~~~g~~~v~~ 93 (152)
+..+..+...+...|++.+..
T Consensus 153 ~~~~~~~~~~~~~~G~~~~~~ 173 (199)
T PF02525_consen 153 DHLLPYLRGILKFCGIKDVES 173 (199)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhHHHHHHHHHhCCCceeeE
Confidence 233334555667789998853
No 29
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.11 E-value=1.3e-09 Score=80.99 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCc-cc----cCCCCCCeEEEEEecCCCC-----CCCc-ch
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-WR----SQQLAGKPAGIFYSTGSQG-----GGQE-TT 75 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~-~~----~~~l~gK~~~~~~s~g~~~-----gg~~-~~ 75 (152)
.|+... .+++.+||.|||..|+||+++|+.+|.|+|+.... |. ...++||.+.+++|+|+.. +|.. .+
T Consensus 50 ~d~~~e-q~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~ 128 (184)
T PRK04930 50 IDIPHE-QALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYP 128 (184)
T ss_pred CCHHHH-HHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCC
Confidence 344333 77999999999999999999999999999998642 11 1368999999998876532 1222 23
Q ss_pred HHHHHH----HHHHcCcEEecC
Q 031827 76 PLTAIT----QLVHHGMIFVPI 93 (152)
Q Consensus 76 ~~~~~~----~l~~~g~~~v~~ 93 (152)
++++.. .+...||.+++.
T Consensus 129 ~~~ll~p~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 129 MSDILRPFELTAAMCRMHWLSP 150 (184)
T ss_pred HHHHHHHHHHHHHHcCCeEcCc
Confidence 444433 335578888763
No 30
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.02 E-value=2.1e-09 Score=79.25 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=57.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc-----cCCCCCCeEEEEEecCCCC-----CCCc---chHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-----SQQLAGKPAGIFYSTGSQG-----GGQE---TTPLTAI 80 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~-----~~~l~gK~~~~~~s~g~~~-----gg~~---~~~~~~~ 80 (152)
.+.+.+||.|||..|+||+++|+.+|.|||+...... ...|+||++.++.|+|+.. ++.. ..+..+.
T Consensus 50 q~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~ 129 (176)
T PRK00871 50 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQ 129 (176)
T ss_pred HHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHH
Confidence 7789999999999999999999999999999853211 2358999998888877531 1211 1133334
Q ss_pred HHHHHcCcEEecC
Q 031827 81 TQLVHHGMIFVPI 93 (152)
Q Consensus 81 ~~l~~~g~~~v~~ 93 (152)
..+...||..++.
T Consensus 130 ~~~~~~G~~~l~~ 142 (176)
T PRK00871 130 ATALYCGLNWLPP 142 (176)
T ss_pred HHHHHcCCeEcce
Confidence 4445678887753
No 31
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.02 E-value=2.9e-09 Score=79.39 Aligned_cols=77 Identities=23% Similarity=0.155 Sum_probs=59.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCCCCC----cchHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ----ETTPLTAI 80 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~~gg~----~~~~~~~~ 80 (152)
.+++..||.+||++|+||.++++++|+|||++.... ..+.+.||++.++.+.|+..++. +....++.
T Consensus 82 ~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YLr 161 (202)
T COG1182 82 LEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLR 161 (202)
T ss_pred HHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHHH
Confidence 678999999999999999999999999999986432 14588999999999988766554 33455555
Q ss_pred HHHHHcCcEE
Q 031827 81 TQLVHHGMIF 90 (152)
Q Consensus 81 ~~l~~~g~~~ 90 (152)
..|...|++-
T Consensus 162 ~ilgF~Gitd 171 (202)
T COG1182 162 TILGFLGITD 171 (202)
T ss_pred HHhhhcCCCc
Confidence 5555556543
No 32
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.00 E-value=6.8e-09 Score=75.81 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=65.0
Q ss_pred CCCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHH
Q 031827 9 VPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVH 85 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~-~g-g~~~~~~~~~~~l~~ 85 (152)
+.+....++.++|.||||+||| .+.++..++.|++.+.. ..++||++++|++++.. .+ ....++..+.+.|..
T Consensus 34 ~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~ 109 (167)
T TIGR01752 34 IAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKA 109 (167)
T ss_pred cccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Confidence 3344456899999999999999 56788899999999854 36799999999986432 11 223457778888888
Q ss_pred cCcEEecCCCcCCCC
Q 031827 86 HGMIFVPIGYTFGAG 100 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~ 100 (152)
.|+++|+.-...||.
T Consensus 110 ~G~~~ig~~~~~gy~ 124 (167)
T TIGR01752 110 RGAKVVGFWPTDGYH 124 (167)
T ss_pred cCCeEEceecCCCcc
Confidence 999999864344443
No 33
>PRK06934 flavodoxin; Provisional
Probab=98.98 E-value=1.5e-09 Score=82.67 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=51.1
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~ 82 (152)
.+++.+||.|+||+|+||+.+++.+++|||+. +++||.+..|+|+|+. +...+++.|.+.
T Consensus 124 ~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggs--g~g~s~~~i~~l 183 (221)
T PRK06934 124 IQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGS--RFSDSLREIKRL 183 (221)
T ss_pred HHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCC--CccchHHHHHHH
Confidence 57999999999999999999999999999996 6899999999998653 344567767654
No 34
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=98.91 E-value=3.3e-09 Score=76.14 Aligned_cols=69 Identities=30% Similarity=0.226 Sum_probs=53.3
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
-.+|.++|.|+|.||-||++.++.+|+.+|+++. .+.|||+.++ |||+ +||. ++..++.+......|.+
T Consensus 81 ~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPaliv-SyGG-hGGg-~c~~qL~~v~~fLkm~v 149 (199)
T KOG4530|consen 81 RQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIV-SYGG-HGGG-RCQYQLRQVGVFLKMHV 149 (199)
T ss_pred HHHHhhcceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEE-EecC-CCCc-hHHHHHHHHHhhheeee
Confidence 4689999999999999999999999999999985 5789999776 5555 4443 34455555555556663
No 35
>PRK09271 flavodoxin; Provisional
Probab=98.90 E-value=8.7e-09 Score=74.73 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=65.3
Q ss_pred HHHHhhCCEeEEeccccCCCc-hHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCc----chHHHHHHHHHHcCc
Q 031827 14 PNELAEADGILLGFPTRFGMM-AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQE----TTPLTAITQLVHHGM 88 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~-~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~----~~~~~~~~~l~~~g~ 88 (152)
..++.++|+||||||||+++. +..++.|++.+.. ...++|++++|++++. ++.. .+.+.+...|... +
T Consensus 46 ~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~----~~~~~k~~avfgsgd~--~~~~~~f~~a~~~~~~~l~~~-~ 118 (160)
T PRK09271 46 PLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE----TIGKPPNVAVFGTGET--QWGEEYYCGAVHRMARFFGSS-Y 118 (160)
T ss_pred ccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH----HhccCCeEEEEecCCC--CcCccHHHHHHHHHHHHHhcc-C
Confidence 456778999999999997665 5579999999864 2347899999999732 1221 3455555554321 1
Q ss_pred EEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCH-HHHHHHHHHHHHHHHHHH
Q 031827 89 IFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSE-LELAQAFHQGKYFAGITK 146 (152)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~-e~~~~~~~lG~~la~~~~ 146 (152)
..+.+ ...|++ .+++.++++++++++.++
T Consensus 119 ----~~l~~-------------------------~~~p~~~~d~~~~~~~~~~~~~~~~ 148 (160)
T PRK09271 119 ----PRLKI-------------------------EQMPHGERDAAAIDNWTDKVLALCK 148 (160)
T ss_pred ----Cceee-------------------------ecCCccchhHHHHHHHHHHHHHHhh
Confidence 11111 134554 568999999999987763
No 36
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.85 E-value=3.7e-09 Score=76.54 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=45.1
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL 83 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l 83 (152)
..++.++|.|+||+|+|++++++.|.+||++. .++||.++.|+|+|+. +...+...|.+.+
T Consensus 68 ~~d~~~YD~I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 68 IPDLSDYDTIFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKLC 128 (156)
T ss_dssp -S-GGG-SEEEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred ccCcccCCEEEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHHC
Confidence 44889999999999999999999999999985 6899999999998753 3344566666443
No 37
>PRK07116 flavodoxin; Provisional
Probab=98.80 E-value=2e-08 Score=72.78 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=47.9
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~ 82 (152)
..++.++|.||||+|+|++++++.++.|++++ .+.||++++|+|+|++.. ..+..++.+.
T Consensus 71 ~~~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~--g~~~~~~~~~ 130 (160)
T PRK07116 71 IENIAEYDVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGI--GNAEKELKKS 130 (160)
T ss_pred HhhHHhCCEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCc--CcHHHHHHHH
Confidence 34788999999999999999999999999975 578999999999876432 2345555544
No 38
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=98.76 E-value=7.2e-08 Score=71.90 Aligned_cols=61 Identities=31% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc----cc-----CCCCCCeEEEEEecCCC
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW----RS-----QQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~----~~-----~~l~gK~~~~~~s~g~~ 68 (152)
.|+... .+++.+||.|||--|.||+++|+.+|.||||..... .. +.|.||.+.+++|+|.+
T Consensus 56 ~Dv~~E-~e~l~~AD~ivlqfPlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 56 IDVKAE-QEKLLWADVIVLQFPLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred CCHHHH-HHHHHhcceEEEEcCchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 344444 889999999999999999999999999999985432 11 57999999999998763
No 39
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.60 E-value=1.4e-07 Score=67.16 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=44.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~ 68 (152)
..++.++|.||+|+|+|.+.+++.++.|+++.. ..+++|++++|+++++.
T Consensus 38 ~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~-----~~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 38 EPDLSDYDAVIFGSPIYAGRIPGEMREFIKKNK-----DNLKNKKVALFSVGGSS 87 (143)
T ss_pred ccccccCCEEEEEEEEECCcCCHHHHHHHHHHH-----HHHcCCcEEEEEEeCCC
Confidence 457899999999999999999999999999974 36899999999998763
No 40
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=98.56 E-value=4.7e-07 Score=64.10 Aligned_cols=63 Identities=19% Similarity=0.118 Sum_probs=45.7
Q ss_pred HHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCC--CcchHHHHHHHHH
Q 031827 15 NELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLV 84 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg--~~~~~~~~~~~l~ 84 (152)
.++.++|.||||||+| ++.++..++.|++.+. .++|.+++|++++...++ .-.+.+.+...|.
T Consensus 46 ~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 46 LDPENYDLVFLGTWTWERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred CChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 4677899999999998 5567779999999984 278999999997421111 1145666666653
No 41
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=98.49 E-value=1.3e-07 Score=69.83 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=42.7
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g 66 (152)
..++.++|.||||||+|+|.+++.++.|+++.. ..|++|++++|+++.
T Consensus 41 ~~~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 41 EPDLSDYDRVVIGASIRYGHFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred ccCHHHCCEEEEECccccCCcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 346889999999999999999999999999864 378999999999874
No 42
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=98.28 E-value=1.3e-06 Score=61.63 Aligned_cols=82 Identities=23% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHhhCCEeEEeccccCCC-chHHHHHHHHHhcCcc----ccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031827 14 PNELAEADGILLGFPTRFGM-MAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~-~~~~~k~flD~l~~~~----~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
..++.+++.+|+++|||+.+ ++..++.+++++...+ ....++++.+++|+.+.+..+.--.+.+.+.+.|...|+
T Consensus 40 ~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~ 119 (143)
T PF00258_consen 40 PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGA 119 (143)
T ss_dssp HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTE
T ss_pred hhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCC
Confidence 55899999999999999855 4544443444433222 135789999999988755322222568889999999999
Q ss_pred EEecCCC
Q 031827 89 IFVPIGY 95 (152)
Q Consensus 89 ~~v~~~~ 95 (152)
+++....
T Consensus 120 ~~~~~~~ 126 (143)
T PF00258_consen 120 KRVGPLL 126 (143)
T ss_dssp EEESSSE
T ss_pred EEEECcE
Confidence 9997643
No 43
>PRK09004 FMN-binding protein MioC; Provisional
Probab=98.25 E-value=9.1e-06 Score=58.15 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=62.0
Q ss_pred HHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+++.++|.+||++||| .|.++...+.|++.+... ...|+|+++++|+.+.+....--.....+.+.|...|.+.|.
T Consensus 41 ~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 118 (146)
T PRK09004 41 LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIG 118 (146)
T ss_pred HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEee
Confidence 67899999999999999 789999999999988642 246899999999986543221224566777888889999886
Q ss_pred CC
Q 031827 93 IG 94 (152)
Q Consensus 93 ~~ 94 (152)
..
T Consensus 119 ~~ 120 (146)
T PRK09004 119 ET 120 (146)
T ss_pred cc
Confidence 53
No 44
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.12 E-value=4.2e-05 Score=55.63 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=39.1
Q ss_pred HhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031827 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~ 67 (152)
+.++|.|++|+++|.|++...++.||.++ +||.+++|+|.|.
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l---------~~KkV~lF~T~G~ 78 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKL---------KGKKVALFGTAGA 78 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHc---------cCCeEEEEEecCC
Confidence 78899999999999999999999999885 7899999999875
No 45
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=97.93 E-value=0.00011 Score=52.62 Aligned_cols=102 Identities=20% Similarity=0.070 Sum_probs=68.6
Q ss_pred HHhhCCEeEEeccccCCCchH-HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHHHcCcEEec
Q 031827 16 ELAEADGILLGFPTRFGMMAA-QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~-~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~--~~~~~~~~~~l~~~g~~~v~ 92 (152)
++.++|.+++|||+|..+-.+ .+..|++.+.. ..+++|++++|+++.. .... -.....+...+...|...++
T Consensus 45 ~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~-~~~~~fc~~~~~~~~~~~~~g~~~~~ 119 (151)
T COG0716 45 LLESYDELLLGTPTWGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQ-SYYGYFCEAGGNFEDILEEKGAKAVG 119 (151)
T ss_pred hhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc----cCcCCceEEEEecccc-ccchHHHHHHHHHHHHHHHcCccccc
Confidence 445899999999999876666 99999999975 4789999999999422 2222 23355566666666643332
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
..-..+ . .....+++++.++++.+.+++..
T Consensus 120 ~~~~~~----------------~-----~~~~~~~e~~~~~~~~w~~~~~~ 149 (151)
T COG0716 120 ILETLG----------------Y-----IFDASPNEEDEKRIKEWVKQILN 149 (151)
T ss_pred cccccc----------------e-----eccCCCCCccHHHHHHHHHHHHh
Confidence 210100 0 00134788899999999988765
No 46
>PRK08105 flavodoxin; Provisional
Probab=97.71 E-value=0.0001 Score=52.83 Aligned_cols=74 Identities=12% Similarity=-0.023 Sum_probs=57.0
Q ss_pred hhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 18 AEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 18 ~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||++||| .|.++..++.|++.+... ...|+|+.+++|+.+......--.....+.+.|...|.+.|..
T Consensus 47 ~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 47 YQDELVLVVTSTTGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred ccCCeEEEEECCCCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 4579999999999 788999999999998742 2378999999999875432111245667777888889998865
No 47
>PRK05723 flavodoxin; Provisional
Probab=97.22 E-value=0.0065 Score=43.70 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=59.5
Q ss_pred CCHHHHhhC--CEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCC-CcchHHHHHHHHHHcC
Q 031827 12 ITPNELAEA--DGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHG 87 (152)
Q Consensus 12 ~~~~~i~~a--D~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg-~~~~~~~~~~~l~~~g 87 (152)
....++.++ |.|||++||| .|.++.....|.+.+.... ...|+|+.+++|+.+-...+. --.+...+...|...|
T Consensus 38 ~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lG 116 (151)
T PRK05723 38 ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELG 116 (151)
T ss_pred CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCC
Confidence 446677766 9999999999 5779999999999886421 127999999999986443321 1245667777888888
Q ss_pred cEEecC
Q 031827 88 MIFVPI 93 (152)
Q Consensus 88 ~~~v~~ 93 (152)
.+.|..
T Consensus 117 A~rv~~ 122 (151)
T PRK05723 117 VREVQP 122 (151)
T ss_pred CcEeec
Confidence 887754
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=97.17 E-value=0.0033 Score=54.63 Aligned_cols=85 Identities=9% Similarity=-0.076 Sum_probs=64.7
Q ss_pred CCCCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 8 DVPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
++.+...+++.+.+.+||.++|| .|.++..++.|.+.+.... ...|.|+.+++|+.+.+...---.+.+.+.+.|...
T Consensus 97 ~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~l 175 (600)
T PRK10953 97 NAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAEL 175 (600)
T ss_pred chHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHC
Confidence 45566678899999999999999 7999999999999885321 246899999999987554321223566777777888
Q ss_pred CcEEecC
Q 031827 87 GMIFVPI 93 (152)
Q Consensus 87 g~~~v~~ 93 (152)
|.+.+..
T Consensus 176 GA~rl~~ 182 (600)
T PRK10953 176 GAERLLD 182 (600)
T ss_pred CCeEeec
Confidence 8887753
No 49
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=97.04 E-value=0.00032 Score=50.73 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=49.4
Q ss_pred HHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCC--CcchHHHHHHHHHHcC
Q 031827 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQLVHHG 87 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg--~~~~~~~~~~~l~~~g 87 (152)
++.++|+||||+|+|++.....++.|+.+-. ..|.+||.++|++.=...-+ ...+-.++.+++...-
T Consensus 44 ~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~-----e~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~~~ 112 (175)
T COG4635 44 ALEDYDAVVIGASIRYGHFHEAVQSFVKKHA-----EALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMKSP 112 (175)
T ss_pred ChhhCceEEEecchhhhhhHHHHHHHHHHHH-----HHHhcCCceEEEeehhhcccccCchHHHHHHHHHhcCC
Confidence 7889999999999999999999999999975 47899999999875211111 1123346666665433
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=96.95 E-value=0.0063 Score=52.86 Aligned_cols=85 Identities=13% Similarity=-0.076 Sum_probs=63.4
Q ss_pred CCCCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 8 DVPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
++.+...+++.+.+.+||+++|| .|.++..++.|.+.+.... ...|+|+.+++||.+.+....--.+.+.+.+.|...
T Consensus 94 ~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~l 172 (597)
T TIGR01931 94 SADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEEL 172 (597)
T ss_pred chHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHc
Confidence 45666678899999999999999 7899999999999885421 246899999999976543221123456677777888
Q ss_pred CcEEecC
Q 031827 87 GMIFVPI 93 (152)
Q Consensus 87 g~~~v~~ 93 (152)
|.+.+..
T Consensus 173 Ga~ri~~ 179 (597)
T TIGR01931 173 GGKRLLP 179 (597)
T ss_pred CCeEeec
Confidence 8887753
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=96.58 E-value=0.0087 Score=42.26 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHhhCCEeEEeccccCC-----CchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 16 ELAEADGILLGFPTRFG-----MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g-----~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.+...+-+||.+|||.. .++.+++.||+.... .....++++++
T Consensus 35 ~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n-------~~~~~gV~gsG 82 (134)
T PRK03600 35 RLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN-------RKLLRGVIASG 82 (134)
T ss_pred cccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc-------CCcEEEEEEec
Confidence 35567889999999984 899999999988532 23466676653
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=96.26 E-value=0.068 Score=37.30 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=32.2
Q ss_pred HHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 16 ELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++ ++|.|++ |+|| .|.+|.++..|++.+. + +..++|+|+
T Consensus 33 ~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~------n---~~~gV~gSG 72 (125)
T TIGR00333 33 HV-DQEFVLI-TYTGGFGAVPKQTISFLNKKH------N---LLRGVAASG 72 (125)
T ss_pred hc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhh------h---cEEEEEEcC
Confidence 44 8999999 9999 5669999999999873 2 788999874
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=79.66 E-value=13 Score=26.75 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=27.3
Q ss_pred HhhCCEeEEecccc-CCC----------chHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 17 LAEADGILLGFPTR-FGM----------MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 17 i~~aD~iIlgsP~y-~g~----------~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
+..-.-.|+-+||| .++ ++.++..|+..- .......++|+++
T Consensus 51 ~~~~~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsG 103 (154)
T PRK02551 51 FPETEPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGSG 103 (154)
T ss_pred cccCCCEEEEEeeecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEeec
Confidence 34456788999999 555 566777776432 2255567787764
No 54
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.09 E-value=3.1 Score=29.65 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=33.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+-+.+||.||++.|.+ .++.+++++.+ .++.....++.+-|-..+......+.+.+.+....+.++.
T Consensus 64 ~~a~~~ad~IiiavPs~------~~~~~~~~l~~-----~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~ls 131 (157)
T PF01210_consen 64 EEALEDADIIIIAVPSQ------AHREVLEQLAP-----YLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLS 131 (157)
T ss_dssp HHHHTT-SEEEE-S-GG------GHHHHHHHHTT-----TSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEE
T ss_pred HHHhCcccEEEecccHH------HHHHHHHHHhh-----ccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEee
Confidence 35678899999999995 35788888864 3433344444444432223333333334333333344444
No 55
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=78.02 E-value=16 Score=26.00 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=29.2
Q ss_pred HhhCCEeEEeccccCCC-----chHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 17 LAEADGILLGFPTRFGM-----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~-----~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
+.-.+-.|+-+|||.++ ++.++-.||..- .-..+.-++++|+
T Consensus 37 ~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSG 83 (141)
T COG1780 37 IEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE-------HNRALCRGVIASG 83 (141)
T ss_pred ccCCCCeEEEeccccCCCccCccCHHHHHHhccc-------cchhheEEEEecC
Confidence 55677899999999765 788888887542 2244456666653
No 56
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=73.04 E-value=2.9 Score=27.63 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=36.2
Q ss_pred hhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.+.||+++- ...+.+-...+|+++.. .||++.++++.+. ....++.+.|..+|+.+-
T Consensus 3 ~D~dGvl~~----g~~~ipga~e~l~~L~~-------~g~~~~~lTNns~------~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 3 FDLDGVLYN----GNEPIPGAVEALDALRE-------RGKPVVFLTNNSS------RSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EESTTTSEE----TTEE-TTHHHHHHHHHH-------TTSEEEEEES-SS------S-HHHHHHHHHHTTTT--
T ss_pred EeCccEeEe----CCCcCcCHHHHHHHHHH-------cCCCEEEEeCCCC------CCHHHHHHHHHhcCcCCC
Confidence 345666664 34455666888899864 6899988887533 235667778888888753
No 57
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=68.99 E-value=15 Score=28.57 Aligned_cols=69 Identities=17% Similarity=0.350 Sum_probs=38.6
Q ss_pred HHHhhCC-EeEEeccccC--CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031827 15 NELAEAD-GILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 15 ~~i~~aD-~iIlgsP~y~--g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
+++..+| +||||+-.|+ +.+++.++.=++.-..++. +||..-++.|+|.. +........|.+.|..+|.
T Consensus 40 ~~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk----~gk~~~ilvSGg~~-~~~~~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 40 QDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYN----SGKVNYLLLSGDNA-LQSYNEPMTMRKDLIAAGV 111 (239)
T ss_pred hhCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHH----hCCCCEEEEeCCCC-CCCCCHHHHHHHHHHHcCC
Confidence 4444444 5678987774 5566666544444333322 56666667676542 2223345567777776665
No 58
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=63.21 E-value=7.2 Score=27.05 Aligned_cols=42 Identities=21% Similarity=0.087 Sum_probs=24.8
Q ss_pred HhhCCEeEEeccccCCC-----chHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 17 LAEADGILLGFPTRFGM-----MAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~-----~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-.+=.|+-+|||..+ ++.++..||+.-. -.....++++|+
T Consensus 35 ~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~-------N~~~l~GVigSG 81 (122)
T PF07972_consen 35 LEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPD-------NRKLLRGVIGSG 81 (122)
T ss_dssp S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHH-------HGGGEEEEEEEE
T ss_pred ccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHH-------HHhhheeEEecC
Confidence 34455678889999644 8999999999421 122355666654
No 59
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=61.02 E-value=65 Score=25.59 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=45.0
Q ss_pred CHHHHhh---CCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 13 TPNELAE---ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 13 ~~~~i~~---aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+++++.+ -|..|+..|- ..+...++.+.. +|-+++++.+.|.. +...+.+.+.....|+.
T Consensus 54 sv~dlp~~~~~Dlavi~vpa------~~v~~~l~e~~~-------~Gvk~avIis~Gf~----e~~~~~l~~~a~~~gir 116 (286)
T TIGR01019 54 SVKEAVEETGANASVIFVPA------PFAADAIFEAID-------AGIELIVCITEGIP----VHDMLKVKRYMEESGTR 116 (286)
T ss_pred CHHHHhhccCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 3566666 4999999994 566666666643 55556666666542 22345677777889999
Q ss_pred EecCCC
Q 031827 90 FVPIGY 95 (152)
Q Consensus 90 ~v~~~~ 95 (152)
++|+..
T Consensus 117 ilGPNc 122 (286)
T TIGR01019 117 LIGPNC 122 (286)
T ss_pred EECCCC
Confidence 999754
No 60
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=55.17 E-value=12 Score=25.93 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.6
Q ss_pred CCCCCHHHHhhCCEeEEeccc
Q 031827 9 VPTITPNELAEADGILLGFPT 29 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~ 29 (152)
-+.++.++|.+||+|||++=+
T Consensus 46 eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 46 ENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred cCcCCHHHHHhCCEEEEEecc
Confidence 356789999999999999854
No 61
>PRK08818 prephenate dehydrogenase; Provisional
Probab=54.38 E-value=15 Score=30.30 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCCCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 4 GPKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 4 ~~~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
|+.|+...-..+.+.+||.|||++|+ ..+..++.++.
T Consensus 36 D~~d~~~~~~~~~v~~aDlVilavPv------~~~~~~l~~l~ 72 (370)
T PRK08818 36 DPADPGSLDPATLLQRADVLIFSAPI------RHTAALIEEYV 72 (370)
T ss_pred cCCccccCCHHHHhcCCCEEEEeCCH------HHHHHHHHHHh
Confidence 55443333224568899999999999 66666666664
No 62
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=54.27 E-value=22 Score=25.36 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHH--hhCCEeEEecc-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 14 PNEL--AEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i--~~aD~iIlgsP-~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.+++ .++|+|++..- .+.....+.++.|+.+... ++|+++.+++
T Consensus 53 ~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~ 99 (170)
T cd03140 53 LDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALK-------QGKPVAAICG 99 (170)
T ss_pred hhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHH-------cCCEEEEECh
Confidence 4444 67898776543 3333345678888888742 5677766654
No 63
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=54.07 E-value=36 Score=23.60 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=36.9
Q ss_pred ccCCCchHHHHHHHHHhcCcc----cc----CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031827 29 TRFGMMAAQFKAFLDATGGLW----RS----QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 29 ~y~g~~~~~~k~flD~l~~~~----~~----~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
+|+.++++..+.|++++...- .. ..+ +.+..++ |+.|..|.-...+..+.+.+..+-.-+++.|.
T Consensus 1 IvY~S~TGNte~fv~~lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n~~~gV~gSGn 73 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHNLLRGVAASGN 73 (125)
T ss_pred CEEEcccccHHHHHHHcCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhhcEEEEEEcCC
Confidence 467889999999999886321 00 133 6777777 77653333333344444433443455566553
No 64
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=52.86 E-value=1.1e+02 Score=24.00 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=36.5
Q ss_pred CCEeEEeccccCCCchHHHHHHHHHhcCccccCCC-CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031827 20 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 20 aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l-~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
+|.||+..|.. ..++.+++.+.. .+ +|+.+ +-.++.. ......+.+.+...|..+++-+..
T Consensus 60 advVi~~vp~~-----~~~~~v~~~i~~-----~l~~g~iv-id~st~~-----~~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG-----EVTESVIKDLYP-----LLSPGDIV-VDGGNSR-----YKDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc-----hHHHHHHHHHhc-----cCCCCCEE-EECCCCC-----chhHHHHHHHHHHcCCeEEeCCCC
Confidence 69999999974 466666666543 23 34432 2222211 223566777777889988876543
No 65
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=52.83 E-value=1.2e+02 Score=24.44 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHhhCCEeEEeccccCCCc-hHHHHHHHHHhc
Q 031827 14 PNELAEADGILLGFPTRFGMM-AAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~-~~~~k~flD~l~ 46 (152)
.+.+.++|.+|+=+| +|.+ ..-+|.|++.+.
T Consensus 136 ~EAvk~aei~I~ftP--fG~~t~~Iikki~~~ip 167 (342)
T PRK00961 136 REAVADADIVITWLP--KGGMQPDIIEKFADDIK 167 (342)
T ss_pred HHHhcCCCEEEEecC--CCCCchHHHHHHHhhCC
Confidence 677889999999888 5665 778899999984
No 66
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=52.74 E-value=33 Score=26.48 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=35.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+.+.++|.||+++|+ ..+..++..+.+. ++ +..+++-.++ -....++.+...+. .+..+|+
T Consensus 40 ~~~~~~~DlvvlavP~------~~~~~~l~~~~~~-----~~--~~~iv~Dv~S---vK~~~~~~~~~~~~-~~~~~v~ 101 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPV------SAIEDVLEEIAPY-----LK--PGAIVTDVGS---VKAPIVEAMERLLP-EGVRFVG 101 (258)
T ss_dssp HHHGGCCSEEEE-S-H------HHHHHHHHHHHCG-----S---TTSEEEE--S----CHHHHHHHHHHHT-SSGEEEE
T ss_pred HhHhcCCCEEEEcCCH------HHHHHHHHHhhhh-----cC--CCcEEEEeCC---CCHHHHHHHHHhcC-cccceee
Confidence 5788999999999998 6788888888642 21 2223333222 12334455554433 5667776
No 67
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=48.40 E-value=68 Score=22.08 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=32.9
Q ss_pred EeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031827 22 GILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 22 ~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
.||||.+.+....++.++.=++.-..++. +++.--++.|+|...+........+.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 57899999977766444443333333322 2333334445543322123345566667666663
No 68
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=47.28 E-value=1.4e+02 Score=23.69 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=43.6
Q ss_pred CHHHHhh---CCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 13 TPNELAE---ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 13 ~~~~i~~---aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+++++.+ -|..|+..|. ..+...++.+.. +|-+.+++.|+|.. ....+++.+.....||.
T Consensus 56 sv~dlp~~~~~DlAvi~vp~------~~v~~~l~e~~~-------~gvk~avI~s~Gf~----~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 56 TVAEAVEATGANASVIYVPP------PFAADAILEAID-------AGIDLIVCITEGIP----VLDMLEVKAYLERKKTR 118 (291)
T ss_pred CHHHHhhccCCCEEEEEcCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 3566666 4999999995 556666666643 45456666666542 11123677777889999
Q ss_pred EecCCC
Q 031827 90 FVPIGY 95 (152)
Q Consensus 90 ~v~~~~ 95 (152)
++|+..
T Consensus 119 vlGPNc 124 (291)
T PRK05678 119 LIGPNC 124 (291)
T ss_pred EECCCC
Confidence 999764
No 69
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=46.21 E-value=38 Score=25.51 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=26.2
Q ss_pred HhhCCEeEEec---cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 17 LAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 17 i~~aD~iIlgs---P~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++|+|+|.- |.+...-...+..|+.++.. ++|+++.+++
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~-------~~k~iaaIC~ 131 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYE-------NGKVVAAVCH 131 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHH-------cCCEEEEEcc
Confidence 44799998864 34545556778888877642 4555555543
No 70
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=45.89 E-value=34 Score=26.94 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=25.3
Q ss_pred ccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecC
Q 031827 27 FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 27 sP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g 66 (152)
.|.+.......++.|+++-. .++|+..++++|+|
T Consensus 7 ~p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGG 40 (302)
T KOG2728|consen 7 VPESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGG 40 (302)
T ss_pred CcccccchhHHHHHHHHHHh------hccCceEEEEecCC
Confidence 47788888888999999965 45666666666554
No 71
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=41.98 E-value=1.9e+02 Score=23.45 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.7
Q ss_pred HHHHhhCCEeEEeccccCCCc-hHHHHHHHHHhc
Q 031827 14 PNELAEADGILLGFPTRFGMM-AAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~-~~~~k~flD~l~ 46 (152)
.+.+.++|.+|+=+| +|.. ..-+|.|++.+.
T Consensus 134 ~EAv~~aei~I~ftP--fG~~q~~Iikkii~~lp 165 (340)
T TIGR01723 134 REAVEDADIIITWLP--KGNKQPDIIKKFIDDIP 165 (340)
T ss_pred HHHhcCCCEEEEEcC--CCCCchHHHHHHHhhCC
Confidence 677889999999888 5665 788899999984
No 72
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=41.66 E-value=37 Score=26.85 Aligned_cols=45 Identities=18% Similarity=0.008 Sum_probs=26.8
Q ss_pred HHHHhhCCEeEEecc-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFP-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP-~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.+++.++|.||+... .......+.+..||.+... ++|.++.++++
T Consensus 70 ~~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~g 115 (322)
T PRK09393 70 LELLDRADTIVIPGWRGPDAPVPEPLLEALRAAHA-------RGARLCSICSG 115 (322)
T ss_pred ccccCCCCEEEECCCCcccccCCHHHHHHHHHHHH-------cCCEEEEEcHH
Confidence 445678999998442 1122235667777766532 66666666553
No 73
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=41.58 E-value=1.7e+02 Score=24.63 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=40.1
Q ss_pred CCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC--cchHHHHHHHHHHcCcEEecCCC
Q 031827 20 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ--ETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 20 aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~--~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
-|..|+..|. ..+...++.+.. .|-..+++.+.|....+. ....+.+.+.....|+.++|++.
T Consensus 65 ~Dlavi~vp~------~~~~~~l~e~~~-------~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc 129 (447)
T TIGR02717 65 VDLAVIVVPA------KYVPQVVEECGE-------KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNC 129 (447)
T ss_pred CCEEEEecCH------HHHHHHHHHHHh-------cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCe
Confidence 5899999884 666777777653 344455555655432221 12235677777889999999753
No 74
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=47 Score=29.10 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 53 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 53 ~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
-.+|++++++|+.|+ |..+.++.++.++...|=..|+.
T Consensus 375 I~kGekVaIvG~nGs---GKSTilr~LlrF~d~sG~I~IdG 412 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGS---GKSTILRLLLRFFDYSGSILIDG 412 (591)
T ss_pred ecCCCEEEEECCCCC---CHHHHHHHHHHHhccCCcEEECC
Confidence 347999999998764 55566777888888778888763
No 75
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=39.31 E-value=59 Score=25.06 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHH-hhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCC-CCC----cchHHHHHHHHHHcC
Q 031827 14 PNEL-AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQG-GGQ----ETTPLTAITQLVHHG 87 (152)
Q Consensus 14 ~~~i-~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~-gg~----~~~~~~~~~~l~~~g 87 (152)
..+| .++|.+||+.|.-- ++..-...||+.. .+|-.+.++....... .+. ......+...|..+|
T Consensus 191 ~~~IP~~~d~Lvi~~P~~~--ls~~e~~~l~~yl-------~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~G 261 (271)
T PF09822_consen 191 NEEIPDDADVLVIAGPKTD--LSEEELYALDQYL-------MNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYG 261 (271)
T ss_pred ccccCCCCCEEEEECCCCC--CCHHHHHHHHHHH-------HcCCeEEEEECCcccccccccccccccccCHHHHHHHcC
Confidence 3455 78999999999952 3333344444432 1444444554432111 000 001234666677788
Q ss_pred cEEe
Q 031827 88 MIFV 91 (152)
Q Consensus 88 ~~~v 91 (152)
+.+-
T Consensus 262 i~~~ 265 (271)
T PF09822_consen 262 IRIN 265 (271)
T ss_pred CEeC
Confidence 8764
No 76
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=39.15 E-value=75 Score=23.58 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 6 ~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
.+|....+.+.+..+|+||+-+-.-.---.++.+.|.+.+.
T Consensus 39 ~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 39 TEDPDDLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVE 79 (217)
T ss_dssp CCSGGCTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHH
T ss_pred EeCcccCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 34555666778999999999877611124566677776663
No 77
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=39.15 E-value=2.2e+02 Score=23.56 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=45.0
Q ss_pred CCHHHHhhCCEeEEeccccCCCchHHH-HHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 12 ITPNELAEADGILLGFPTRFGMMAAQF-KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~-k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
+..+.+.+....+..+|-++...-++. -..+=.+.+. ....+.||.++++|.+ . .-..+...+..+||.+
T Consensus 72 iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~-~g~~L~gktvGIIG~G-~-------IG~~vA~~l~a~G~~V 142 (378)
T PRK15438 72 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER-DGFSLHDRTVGIVGVG-N-------VGRRLQARLEALGIKT 142 (378)
T ss_pred cCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc-CCCCcCCCEEEEECcC-H-------HHHHHHHHHHHCCCEE
Confidence 445667788888888998876554432 2222222211 1247899999999863 2 1233556667789999
Q ss_pred ecC
Q 031827 91 VPI 93 (152)
Q Consensus 91 v~~ 93 (152)
+..
T Consensus 143 ~~~ 145 (378)
T PRK15438 143 LLC 145 (378)
T ss_pred EEE
Confidence 854
No 78
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=38.59 E-value=34 Score=24.32 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHH--HhhCCEeEEeccc---cCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 14 PNE--LAEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~--i~~aD~iIlgsP~---y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
+++ ..++|+|++.... +.....+.+..|+.++.. ++|+++.+++
T Consensus 56 ~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~-------~~~~i~~ic~ 104 (179)
T TIGR01383 56 LEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQES-------KGKLVAAICA 104 (179)
T ss_pred HHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHH-------CCCEEEEECh
Confidence 444 4579999986532 111234567777777642 5666666554
No 79
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=38.33 E-value=1.7e+02 Score=23.75 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=36.8
Q ss_pred CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHH
Q 031827 52 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELEL 131 (152)
Q Consensus 52 ~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~ 131 (152)
+.++|+.++.+|-+ ......+......+||.+.-. .| + ...|+++-+
T Consensus 149 g~l~g~k~a~vGDg-------NNv~nSl~~~~a~~G~dv~ia-----~P--------------------k-~~~p~~~~~ 195 (310)
T COG0078 149 GSLKGLKLAYVGDG-------NNVANSLLLAAAKLGMDVRIA-----TP--------------------K-GYEPDPEVV 195 (310)
T ss_pred CcccCcEEEEEcCc-------chHHHHHHHHHHHhCCeEEEE-----CC--------------------C-cCCcCHHHH
Confidence 35899999887653 235666776667788876421 00 1 145888888
Q ss_pred HHHHHHHHH
Q 031827 132 AQAFHQGKY 140 (152)
Q Consensus 132 ~~~~~lG~~ 140 (152)
+.|++.++.
T Consensus 196 ~~a~~~a~~ 204 (310)
T COG0078 196 EKAKENAKE 204 (310)
T ss_pred HHHHHHHHh
Confidence 888887653
No 80
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.29 E-value=71 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.007 Sum_probs=31.1
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~ 63 (152)
...+.++|.||+-+=.-..++...+|..-.+ .|+|+...-
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~~ 82 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYSR 82 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEEC
Confidence 6789999999999988888888888876555 566775543
No 81
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=38.22 E-value=1.8e+02 Score=22.26 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCCCCCCCCC---HHHHhhC--CEeEEeccccCCCchHHHHHHHHHhc
Q 031827 3 AGPKSDVPTIT---PNELAEA--DGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 3 ~~~~~d~~~~~---~~~i~~a--D~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
+||+...++.. .+++.++ |+|++|-...... ..+...+.++.
T Consensus 6 iDPdK~~~~~~~~~~~~~~~~gtdai~vGGS~~vt~--~~~~~~v~~ik 52 (223)
T TIGR01768 6 IDPDKTNPSEADEIAKAAAESGTDAILIGGSQGVTY--EKTDTLIEALR 52 (223)
T ss_pred ECCCCCCccccHHHHHHHHhcCCCEEEEcCCCcccH--HHHHHHHHHHh
Confidence 36666533332 5566666 9999999884322 25555666664
No 82
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=38.20 E-value=36 Score=24.05 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031827 131 LAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 131 ~~~~~~lG~~la~~~~~~ 148 (152)
...+.++|+||+++|+-.
T Consensus 108 EADa~EFGERiaELAKiR 125 (151)
T PF06554_consen 108 EADAQEFGERIAELAKIR 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 467889999999999753
No 83
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=37.60 E-value=2.2e+02 Score=23.55 Aligned_cols=73 Identities=14% Similarity=0.016 Sum_probs=44.9
Q ss_pred CCHHHHhhCCEeEEeccccCCCchHHH-HHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 12 ITPNELAEADGILLGFPTRFGMMAAQF-KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~-k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
+..+.+.+....+.-+|-++...-++. -..+=.+.+. ....+.||.++++|.+ . .-..+...+..+||.+
T Consensus 72 iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-~g~~l~gktvGIIG~G-~-------IG~~va~~l~a~G~~V 142 (381)
T PRK00257 72 LDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-EGVDLAERTYGVVGAG-H-------VGGRLVRVLRGLGWKV 142 (381)
T ss_pred cCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-cCCCcCcCEEEEECCC-H-------HHHHHHHHHHHCCCEE
Confidence 445667777888888898886554442 2222222221 1247899999999863 2 1233556667789998
Q ss_pred ecC
Q 031827 91 VPI 93 (152)
Q Consensus 91 v~~ 93 (152)
+..
T Consensus 143 ~~~ 145 (381)
T PRK00257 143 LVC 145 (381)
T ss_pred EEE
Confidence 754
No 84
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=37.39 E-value=75 Score=23.12 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCCCCeEEEEEecCCCCC--CCcchHHHHHHHHHHcCcEEecCCC
Q 031827 53 QLAGKPAGIFYSTGSQGG--GQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 53 ~l~gK~~~~~~s~g~~~g--g~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
.++||+..++-++.- -| -+-..++.+.+.+...|+.+++.++
T Consensus 22 ~~~GkVlLIVNtASk-CGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASK-CGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccc-cCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 578999988877532 22 2335678888888999999998764
No 85
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=36.22 E-value=21 Score=28.16 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.7
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..|||+|++|||
T Consensus 164 ~r~DGliVsTPT 175 (281)
T COG0061 164 FRGDGLIVSTPT 175 (281)
T ss_pred EecCEEEEEcCC
Confidence 369999999998
No 86
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=36.22 E-value=44 Score=24.18 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=25.9
Q ss_pred HHHHhhCCEeEEec---ccc--CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 14 PNELAEADGILLGF---PTR--FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i~~aD~iIlgs---P~y--~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++..++|.|++.. +.. ...-...+..|+.+... ++|+++.+++
T Consensus 64 ~~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~ 112 (195)
T cd03138 64 LADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHA-------NGATVAAACT 112 (195)
T ss_pred ccccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHH-------cCCEEEEecH
Confidence 34567899999843 221 12335667777776542 5566666654
No 87
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=35.68 E-value=51 Score=25.21 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=20.3
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
..++.++|.|||.||. -++.|++++..
T Consensus 50 l~~l~~~d~iifTS~n-------aV~~~~~~l~~ 76 (255)
T PRK05752 50 LLELDRYCAVIVVSKP-------AARLGLELLDR 76 (255)
T ss_pred HhcCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 3567899999999987 35667777643
No 88
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=35.38 E-value=1.2e+02 Score=23.85 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=34.4
Q ss_pred CCEeEEeccccCCCchHHHHHHHHHhcCccccCCC-CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031827 20 ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 20 aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l-~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
+|.||+..|. ...++..++.+.. .+ .|+ ++...+. +.. .....+...+...|..+++-+..
T Consensus 60 ~dvvi~~v~~-----~~~~~~v~~~l~~-----~l~~g~---ivid~st--~~~-~~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPA-----GEITDATIDELAP-----LLSPGD---IVIDGGN--SYY-KDDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred CCEEEEEecC-----CcHHHHHHHHHHh-----hCCCCC---EEEeCCC--CCh-hHHHHHHHHHHHcCCEEEeCCCC
Confidence 6999999997 2344555555432 22 233 2223211 122 23555667778889999876543
No 89
>PRK10444 UMP phosphatase; Provisional
Probab=35.29 E-value=56 Score=25.13 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=36.7
Q ss_pred hhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
.+.||+++-.- .+.+....+++++.. .||++.+++..+. .....+.+.|..+|+.+
T Consensus 6 ~DlDGtL~~~~----~~~p~a~~~l~~L~~-------~g~~~~~~Tn~~~------~~~~~~~~~l~~~G~~~ 61 (248)
T PRK10444 6 CDIDGVLMHDN----VAVPGAAEFLHRILD-------KGLPLVLLTNYPS------QTGQDLANRFATAGVDV 61 (248)
T ss_pred EeCCCceEeCC----eeCccHHHHHHHHHH-------CCCeEEEEeCCCC------CCHHHHHHHHHHcCCCC
Confidence 46788887764 345666788888853 6888877765322 23455666777777754
No 90
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=34.89 E-value=51 Score=25.21 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++..+|.|||.||. -++.|++++...... .+++++.+++|-
T Consensus 45 l~~l~~~d~vvfTS~~-------av~~~~~~l~~~~~~-~~~~~~i~aVG~ 87 (248)
T COG1587 45 LEDLDSADWVVFTSPN-------AVRFFFEALKEQGLD-ALKNKKIAAVGE 87 (248)
T ss_pred HhccccCCEEEEECHH-------HHHHHHHHHHhhccc-ccccCeEEEEcH
Confidence 6667779999999986 568888888653221 456888888873
No 91
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=34.19 E-value=96 Score=26.95 Aligned_cols=83 Identities=13% Similarity=-0.024 Sum_probs=57.8
Q ss_pred CCCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCcc-ccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLW-RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~-~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+-.+++|.+.+.+||.+.|- -|.++.-||.|.--+.+.- ....|++--.+++|-+.++..--.-+.+.+.+.|.+.
T Consensus 37 ~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qL 116 (574)
T KOG1159|consen 37 MDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQL 116 (574)
T ss_pred ccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHh
Confidence 3445678999999999998888 5888999998876665421 1235677788898876544333345667777777777
Q ss_pred CcEEe
Q 031827 87 GMIFV 91 (152)
Q Consensus 87 g~~~v 91 (152)
|..-+
T Consensus 117 GA~~~ 121 (574)
T KOG1159|consen 117 GANSV 121 (574)
T ss_pred Ccccc
Confidence 76654
No 92
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=33.90 E-value=3.1e+02 Score=24.23 Aligned_cols=15 Identities=7% Similarity=-0.126 Sum_probs=12.2
Q ss_pred hCCEeEEeccccCCC
Q 031827 19 EADGILLGFPTRFGM 33 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~ 33 (152)
+.|++|+.+|+|-++
T Consensus 73 ~Vd~tI~vtpcWcyg 87 (584)
T cd03556 73 NVGATITVTPCWCYG 87 (584)
T ss_pred CCCEEEEecceecCc
Confidence 378999999999654
No 93
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.76 E-value=2.3e+02 Score=22.75 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
+.+..+|.||++.|.+ .+..+++++.+
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~~ 99 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELAK 99 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHHh
Confidence 3467899999999964 67777777753
No 94
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=33.41 E-value=65 Score=23.83 Aligned_cols=32 Identities=19% Similarity=0.027 Sum_probs=26.5
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
.+-+..||.+| |--.|+.++-+.+--|||||.
T Consensus 117 ~evye~aDynl-gvg~qpHSvrAAlAI~LDRL~ 148 (176)
T PRK03958 117 REVYELADWNV-AVGNQPHSEVAALAVFLDRLF 148 (176)
T ss_pred HHHHhhCCEEe-ccCCCChHHHHHHHHHHHHhc
Confidence 45566788877 888888999999999999986
No 95
>TIGR01089 fucI L-fucose isomerase. This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron.
Probab=32.84 E-value=3.5e+02 Score=23.95 Aligned_cols=15 Identities=7% Similarity=-0.234 Sum_probs=12.4
Q ss_pred hCCEeEEeccccCCC
Q 031827 19 EADGILLGFPTRFGM 33 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~ 33 (152)
+.|++|+.+|+|-++
T Consensus 76 ~Vd~tItvtpcWcyg 90 (587)
T TIGR01089 76 NVGLTITVTPCWCYG 90 (587)
T ss_pred CCCEEEEecceecCc
Confidence 379999999999655
No 96
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=32.65 E-value=54 Score=25.04 Aligned_cols=42 Identities=5% Similarity=-0.136 Sum_probs=27.9
Q ss_pred HHhhCCEeEEec---cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 16 ELAEADGILLGF---PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 16 ~i~~aD~iIlgs---P~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
+..++|+|+|-- |++...-+..++.++..+.. +||++++++.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~-------~gK~iaAICh 135 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYA-------NGGVVAAVCH 135 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECh
Confidence 356899988843 55655557778888877653 5666666643
No 97
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.14 E-value=27 Score=27.77 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=10.7
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 175 ~~~DGlIVSTPT 186 (287)
T PRK14077 175 YFGDGVIVATPA 186 (287)
T ss_pred EEcCEEEEeCCC
Confidence 359999999998
No 98
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=30.67 E-value=86 Score=23.23 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=26.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~ 63 (152)
...+.++|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 47 ~~~~~~~d~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 88 (249)
T PRK05928 47 QLAALGADWVIFTSKN-------AVEFLLSALKKKK-LKWPKNKKYAAIG 88 (249)
T ss_pred HhhCCCCCEEEEECHH-------HHHHHHHHHHhcC-cCCCCCCEEEEEC
Confidence 4677889999999986 5577777664111 1234555555554
No 99
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.48 E-value=25 Score=27.68 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 156 ~~~DGlIVsTPT 167 (271)
T PRK01185 156 FKADGVIVATPT 167 (271)
T ss_pred EEeeEEEEeCCC
Confidence 469999999998
No 100
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.46 E-value=29 Score=27.87 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 179 ~~~DGlIVsTPT 190 (305)
T PRK02649 179 IAADGVILSTPT 190 (305)
T ss_pred EecCeEEEeCCC
Confidence 469999999998
No 101
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.26 E-value=30 Score=27.79 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=10.6
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 183 ~~~DGlIVsTPT 194 (306)
T PRK03372 183 FGCDGVLVSTPT 194 (306)
T ss_pred EecCEEEEeCCC
Confidence 358999999998
No 102
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=30.12 E-value=49 Score=22.96 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=25.5
Q ss_pred CHHHH--hhCCEeEEeccc--c-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 13 TPNEL--AEADGILLGFPT--R-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 13 ~~~~i--~~aD~iIlgsP~--y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
..+++ .++|+||+..-. . ...-.+.+..|+.+... ++|+++.+++
T Consensus 52 ~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~-------~~~~i~~ic~ 101 (163)
T cd03135 52 TLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNA-------KGKLIAAICA 101 (163)
T ss_pred CHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHH-------cCCEEEEEch
Confidence 35555 689999885422 1 11124556666666542 5677666654
No 103
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=30.12 E-value=1e+02 Score=23.60 Aligned_cols=29 Identities=10% Similarity=-0.166 Sum_probs=20.1
Q ss_pred hhCCEeEEe---ccccCCCchHHHHHHHHHhc
Q 031827 18 AEADGILLG---FPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 18 ~~aD~iIlg---sP~y~g~~~~~~k~flD~l~ 46 (152)
.++|+|++- .|++...-...+..++.++.
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~ 126 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAI 126 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHH
Confidence 589999884 35665555666777777664
No 104
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=30.07 E-value=1.3e+02 Score=20.92 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=29.5
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..+.+||++|+.--.-...-....+.++..+.. ...+.++|+.++++=
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK 109 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANK 109 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeC
Confidence 446789999996433332233445666666542 134578899888874
No 105
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=29.86 E-value=2.9e+02 Score=22.11 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=39.9
Q ss_pred HHHHhh---CCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELAE---ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~---aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++.+ .|..|+..|. ..+...++.+.. +|=+++++.+.|-. .. ...+.+.......|+.+
T Consensus 61 v~dlp~~~~~DlAvI~vPa------~~v~~al~e~~~-------~Gvk~~vIisaGf~--e~-g~~~~~~~~ar~~girv 124 (300)
T PLN00125 61 VAEAKAETKANASVIYVPP------PFAAAAILEAME-------AELDLVVCITEGIP--QH-DMVRVKAALNRQSKTRL 124 (300)
T ss_pred HHHHhhccCCCEEEEecCH------HHHHHHHHHHHH-------cCCCEEEEECCCCC--cc-cHHHHHHHHHhhcCCEE
Confidence 555555 5999999995 555555556542 45566666676542 11 12233333346689999
Q ss_pred ecCCC
Q 031827 91 VPIGY 95 (152)
Q Consensus 91 v~~~~ 95 (152)
+|+..
T Consensus 125 iGPNc 129 (300)
T PLN00125 125 IGPNC 129 (300)
T ss_pred ECCCC
Confidence 99764
No 106
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=29.77 E-value=1.5e+02 Score=21.83 Aligned_cols=44 Identities=16% Similarity=-0.012 Sum_probs=28.8
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~ 67 (152)
..-+.||.+|+.-|+ -..+.+.++...|.+ .+=|.+.++|++..
T Consensus 66 aSPRhADvLlVtG~v-T~km~~~l~~~yeqm--------PePK~VIA~G~CA~ 109 (173)
T PRK14818 66 ASPRQADFMIVAGTL-TYKMAERARLLYDQM--------PEPKYVISMGSCSN 109 (173)
T ss_pred CCcccccEEEEeCcC-ccccHHHHHHHHHhC--------CCCCEEEEeccccc
Confidence 345789999987776 344445555555443 35678888888754
No 107
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.74 E-value=2.2e+02 Score=21.27 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=46.4
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g 87 (152)
+.|+. ..++.+.|+|.+|-- +++...+....+++.+ -||.++-+.+- .+.....+.+..+|
T Consensus 92 ~Ap~~-L~~~~~~daiFIGGg---~~i~~ile~~~~~l~~-------ggrlV~naitl--------E~~~~a~~~~~~~g 152 (187)
T COG2242 92 DAPEA-LPDLPSPDAIFIGGG---GNIEEILEAAWERLKP-------GGRLVANAITL--------ETLAKALEALEQLG 152 (187)
T ss_pred cchHh-hcCCCCCCEEEECCC---CCHHHHHHHHHHHcCc-------CCeEEEEeecH--------HHHHHHHHHHHHcC
Confidence 45555 556668999999876 7788888888887742 56666555441 23555667778888
Q ss_pred c-EEecCCC
Q 031827 88 M-IFVPIGY 95 (152)
Q Consensus 88 ~-~~v~~~~ 95 (152)
+ .++...+
T Consensus 153 ~~ei~~v~i 161 (187)
T COG2242 153 GREIVQVQI 161 (187)
T ss_pred CceEEEEEe
Confidence 8 6665443
No 108
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.61 E-value=26 Score=27.89 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=10.7
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 174 ~~~DGlIVsTPT 185 (292)
T PRK01911 174 YWADGLIVATPT 185 (292)
T ss_pred EeeceeEECCCC
Confidence 359999999999
No 109
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=29.07 E-value=1e+02 Score=22.46 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~ 63 (152)
...+..+|.|||.||. .++.|++.+...+ ...+.++++.++|
T Consensus 44 ~~~~~~~~~iiftS~~-------av~~~~~~~~~~~-~~~~~~~~~~avG 85 (239)
T cd06578 44 LADLDEYDWLIFTSPN-------AVEAFFEALEELG-LRALAGLKIAAVG 85 (239)
T ss_pred HHhcCCCCEEEEECHH-------HHHHHHHHHHhhC-CccccCCEEEEEC
Confidence 3455578999999994 5566666664321 1234555555554
No 110
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=29.06 E-value=80 Score=22.59 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHHhhCCEeEEec-cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 15 NELAEADGILLGF-PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 15 ~~i~~aD~iIlgs-P~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
++..++|.||+.. +..-....+.+..|+.+... ++|.++.+++
T Consensus 60 ~~~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~-------~~~~i~aic~ 103 (185)
T cd03136 60 EDAPPLDYLFVVGGLGARRAVTPALLAWLRRAAR-------RGVALGGIDT 103 (185)
T ss_pred cccCCCCEEEEeCCCCccccCCHHHHHHHHHHHh-------cCCEEEEEcH
Confidence 3456789999832 11113345666677766532 5566655554
No 111
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.01 E-value=33 Score=26.93 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++|||
T Consensus 146 ~~gDGlIVsTpt 157 (265)
T PRK04885 146 FRGDGLCVSTPT 157 (265)
T ss_pred EEcCEEEEECCC
Confidence 369999999998
No 112
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.96 E-value=32 Score=26.97 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=10.3
Q ss_pred hCCEeEEeccc
Q 031827 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||||++||+
T Consensus 148 ~~DGlIVsTPt 158 (264)
T PRK03501 148 RGDGMVVSTPT 158 (264)
T ss_pred ecCEEEEeCCC
Confidence 59999999998
No 113
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.96 E-value=32 Score=27.45 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=10.4
Q ss_pred hCCEeEEeccc
Q 031827 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||||++|||
T Consensus 178 ~gDGlIVsTPt 188 (305)
T PRK02645 178 QGDGLIVSTPT 188 (305)
T ss_pred ecCEEEEecCC
Confidence 69999999999
No 114
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.87 E-value=2.7e+02 Score=22.86 Aligned_cols=78 Identities=10% Similarity=-0.065 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHh---hCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHH
Q 031827 7 SDVPTITPNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQL 83 (152)
Q Consensus 7 ~d~~~~~~~~i~---~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l 83 (152)
||+.-+ .+++. ....|.+-+|-|-++.+.-...+++.+........-..+.+.+++.. +. + -+.++...|
T Consensus 104 DDi~~v-~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~-~~--~---d~~el~~lL 176 (396)
T cd01979 104 MDLEGA-APRLSAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSL-PD--I---VEDQLRREL 176 (396)
T ss_pred cCHHHH-HHHHhhcCCCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeC-Cc--c---hHHHHHHHH
Confidence 455444 44443 46788888888887766666666666654322222234455677764 21 1 156678888
Q ss_pred HHcCcEEe
Q 031827 84 VHHGMIFV 91 (152)
Q Consensus 84 ~~~g~~~v 91 (152)
..+|+.++
T Consensus 177 ~~~Gi~v~ 184 (396)
T cd01979 177 EQLGIPVV 184 (396)
T ss_pred HHcCCeEE
Confidence 88999887
No 115
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=28.63 E-value=3e+02 Score=22.52 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.0
Q ss_pred HHHHhh-CCEeEEeccccCCCchHHHHHHHHHh
Q 031827 14 PNELAE-ADGILLGFPTRFGMMAAQFKAFLDAT 45 (152)
Q Consensus 14 ~~~i~~-aD~iIlgsP~y~g~~~~~~k~flD~l 45 (152)
+++..+ ||.||++.|.+ -+..+++++
T Consensus 65 l~~a~~~ad~iv~avPs~------~~r~v~~~l 91 (329)
T COG0240 65 LAEALDGADIIVIAVPSQ------ALREVLRQL 91 (329)
T ss_pred HHHHHhcCCEEEEECChH------HHHHHHHHH
Confidence 444444 99999999984 355555555
No 116
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=28.49 E-value=3.2e+02 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=19.4
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
+-+.+||.||++.|. ..+..++.++.
T Consensus 78 eal~~ADiIIlAVPs------~~i~~vl~~l~ 103 (342)
T TIGR03376 78 EAAKGADILVFVIPH------QFLEGICKQLK 103 (342)
T ss_pred HHHhcCCEEEEECCh------HHHHHHHHHHH
Confidence 446789999999998 45566666664
No 117
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.36 E-value=31 Score=27.03 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 135 ~~gDGlIVsTPt 146 (259)
T PRK00561 135 YRGSGLLIGPRT 146 (259)
T ss_pred EecCEEEEeCch
Confidence 469999999998
No 118
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.28 E-value=34 Score=26.58 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||+|++||+
T Consensus 144 ~~~DG~ivsTpt 155 (256)
T PRK14075 144 FFADGVVISTPT 155 (256)
T ss_pred EecCEEEEeCCC
Confidence 469999999999
No 119
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.00 E-value=33 Score=27.31 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 173 ~~~DGlivsTpt 184 (295)
T PRK01231 173 QRSDGLIVSTPT 184 (295)
T ss_pred EEcceEEEeCCC
Confidence 469999999999
No 120
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.97 E-value=34 Score=27.31 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=10.4
Q ss_pred hCCEeEEeccc
Q 031827 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||+|++|||
T Consensus 180 ~~DGlIVsTPT 190 (296)
T PRK04539 180 RSDGLIVSTPT 190 (296)
T ss_pred ecCeEEEECCC
Confidence 69999999999
No 121
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=27.71 E-value=81 Score=22.89 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=26.4
Q ss_pred HHHH--hhCCEeEEeccc---cCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNEL--AEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i--~~aD~iIlgsP~---y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.+++ .++|+|++..-. ....-.+.+..|+.++.. +||+++.++++
T Consensus 59 l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~-------~g~~v~aic~G 108 (196)
T PRK11574 59 LVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHR-------SGRIVAAICAA 108 (196)
T ss_pred HHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHH-------CCCEEEEECHh
Confidence 4444 368998885321 111223456777766542 78888887664
No 122
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.51 E-value=35 Score=26.88 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=10.5
Q ss_pred hCCEeEEeccc
Q 031827 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||+|++|||
T Consensus 155 ~~DGlIVsTPt 165 (272)
T PRK02231 155 RSDGLIISTPT 165 (272)
T ss_pred ecCeEEEECCC
Confidence 69999999999
No 123
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.49 E-value=36 Score=26.84 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++||+
T Consensus 163 ~~gDGvIvsTpt 174 (277)
T PRK03708 163 VRADGLIISTPT 174 (277)
T ss_pred EecCEEEEeCCC
Confidence 469999999998
No 124
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=27.35 E-value=97 Score=21.94 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=25.8
Q ss_pred HHHHhhCCEeEEeccccC--CCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 14 PNELAEADGILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~--g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++..++|+||+..-... ..-...+..|+.+... ++|+++.+++
T Consensus 57 ~~~~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~-------~~k~i~aic~ 102 (183)
T cd03139 57 FADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAA-------RAKYVTSVCT 102 (183)
T ss_pred cccCCCCCEEEECCCcchhhhccCHHHHHHHHHhcc-------cCCEEEEEch
Confidence 344557999998753211 1224556777766542 6777766655
No 125
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=27.27 E-value=1.3e+02 Score=20.93 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=31.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+....-...-...++.++..+.. ...+.++++.++++=
T Consensus 61 ~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 109 (169)
T cd04158 61 KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANK 109 (169)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeC
Confidence 3456889999998776554434556666666643 123566788888764
No 126
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.75 E-value=64 Score=23.82 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=11.9
Q ss_pred HHHHhhCCEeEEecc
Q 031827 14 PNELAEADGILLGFP 28 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP 28 (152)
.+++.++|+|||.-+
T Consensus 33 ~~~~~~~d~iii~G~ 47 (200)
T PRK13143 33 PEEILDADGIVLPGV 47 (200)
T ss_pred HHHHccCCEEEECCC
Confidence 456789999999774
No 127
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.30 E-value=39 Score=26.25 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=10.4
Q ss_pred hCCEeEEeccc
Q 031827 19 EADGILLGFPT 29 (152)
Q Consensus 19 ~aD~iIlgsP~ 29 (152)
.+||||++||+
T Consensus 133 ~gDGlIVSTPt 143 (246)
T PRK04761 133 VCDGVLVATPA 143 (246)
T ss_pred ecCeEEEeCCc
Confidence 69999999999
No 128
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=26.27 E-value=1.8e+02 Score=22.43 Aligned_cols=43 Identities=16% Similarity=-0.045 Sum_probs=26.3
Q ss_pred HHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031827 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~ 67 (152)
.-+.||.+|+.-|+ -..|...++...|.+ ..=|.+.++|++..
T Consensus 68 SPRhADvliVtG~V-T~km~~~L~rlyeqm--------PePK~VIA~GaCA~ 110 (225)
T CHL00023 68 SPRQADLILTAGTV-TMKMAPSLVRLYEQM--------PEPKYVIAMGACTI 110 (225)
T ss_pred CcccceEEEEecCC-ccccHHHHHHHHHhc--------CCCCeEEEEccccc
Confidence 44668988887666 334444444444443 34578888888754
No 129
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=26.25 E-value=37 Score=26.95 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 174 ~~gDGlIVsTPt 185 (291)
T PRK02155 174 QRSDGLIVATPT 185 (291)
T ss_pred EecCeEEEECCC
Confidence 369999999998
No 130
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=25.86 E-value=1.1e+02 Score=21.90 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=27.6
Q ss_pred HHHHhhCCEeEEeccccC--CCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRF--GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~--g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.++..++|+||+..-... ......+..|+.++.. ++|+++.++++
T Consensus 59 ~~~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~-------~~~~i~aic~g 105 (187)
T cd03137 59 LDALAAADTVIVPGGPDVDGRPPPPALLAALRRAAA-------RGARVASVCTG 105 (187)
T ss_pred ccccCCCCEEEECCCcccccccCCHHHHHHHHHHHh-------cCCEEEEECHH
Confidence 335668999998753211 2345667777766532 57777776654
No 131
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=25.83 E-value=1.3e+02 Score=22.84 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=35.4
Q ss_pred HhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCC
Q 031827 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGS 67 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~ 67 (152)
.-.|.++++||-|.+.++++.+...+-.+.. -..+--+..+..+||
T Consensus 106 ~ggc~gvl~gsfti~sntp~~~a~al~~i~g-----v~a~aa~~av~~~g~ 151 (278)
T PF11038_consen 106 FGGCKGVLLGSFTINSNTPPALASALSAITG-----VVAGAAAVAVVVTGG 151 (278)
T ss_pred cCCcceEEEeeEEecCCCcHHHHHHHHHHhh-----hhhcceEEEEEEecC
Confidence 3458999999999999999999888877753 445666666666665
No 132
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=25.82 E-value=87 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=23.9
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCc
Q 031827 9 VPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL 48 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~ 48 (152)
++|+ .+.+++||.+|++.|. .-+..+++.+...
T Consensus 96 v~dl-~ea~~dADilvf~vPh------Qf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 96 VPDL-VEAAKDADILVFVVPH------QFIPRICEQLKGY 128 (372)
T ss_pred cchH-HHHhccCCEEEEeCCh------hhHHHHHHHHhcc
Confidence 3455 7788899999999997 4455666776543
No 133
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=25.82 E-value=1.1e+02 Score=21.35 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=23.4
Q ss_pred hhCCEeEEec-cccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 18 AEADGILLGF-PTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgs-P~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++|+|++.. |... ..-...+..||.+... .+|+++.+++
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~-------~~~~i~~ic~ 102 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAE-------AGKPVAAICH 102 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHH-------cCCeEEEEch
Confidence 4689877765 3211 1234667777776642 5667666654
No 134
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=25.75 E-value=3.2e+02 Score=21.19 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=38.4
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHH---HHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFL---DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fl---D~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
.+.+.++|.||++.|.. ..++.++ +.+.. ...+|+.+ ...+. -...+.+.+.+.+...|..+
T Consensus 47 ~~~~~~advVil~vp~~-----~~~~~v~~g~~~l~~----~~~~g~~v---id~st---~~p~~~~~~~~~~~~~g~~~ 111 (288)
T TIGR01692 47 AEAAEGADRVITMLPAG-----QHVISVYSGDEGILP----KVAKGSLL---IDCST---IDPDSARKLAELAAAHGAVF 111 (288)
T ss_pred HHHHhcCCEEEEeCCCh-----HHHHHHHcCcchHhh----cCCCCCEE---EECCC---CCHHHHHHHHHHHHHcCCcE
Confidence 34577899999999983 2345554 33321 11234433 22211 11234666777777789999
Q ss_pred ecCCC
Q 031827 91 VPIGY 95 (152)
Q Consensus 91 v~~~~ 95 (152)
++-+.
T Consensus 112 vdaPv 116 (288)
T TIGR01692 112 MDAPV 116 (288)
T ss_pred EECCC
Confidence 88654
No 135
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=25.50 E-value=1.5e+02 Score=21.17 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=36.4
Q ss_pred CCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+.-+...+.++|+-+|-+ .+.+++-...-++... -.+||+.++ . .........+..++..++..
T Consensus 54 ~~RT~~NV~DsDgTlI~~---~g~l~GGt~lT~~~a~-------~~~KP~l~i-~-----~~~~~~~~~v~~wl~~~~i~ 117 (145)
T PF12694_consen 54 RQRTEWNVRDSDGTLIFT---RGELTGGTALTVEFAR-------KHGKPCLHI-D-----LSIPEAAAAVAEWLREHNIR 117 (145)
T ss_dssp HHHHHHHHHTSSEEEEEE---SSS--HHHHHHHHHHH-------HTT--EEEE-T-----S-HHHHHHHHHHHHHHTT--
T ss_pred HHHHHhhhhhcCeEEEEe---cCCCCcHHHHHHHHHH-------HhCCCEEEE-e-----cCcccHHHHHHHHHHHCCce
Confidence 333567899999998877 4455544332222221 157788777 1 12234577788888888887
Q ss_pred Ee
Q 031827 90 FV 91 (152)
Q Consensus 90 ~v 91 (152)
++
T Consensus 118 vL 119 (145)
T PF12694_consen 118 VL 119 (145)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 136
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=25.33 E-value=1.8e+02 Score=22.94 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
.+.+.+||.||+++|+ ..+-.+++++.
T Consensus 59 ~~~~~~aD~VivavPi------~~~~~~l~~l~ 85 (279)
T COG0287 59 AEAAAEADLVIVAVPI------EATEEVLKELA 85 (279)
T ss_pred hhhcccCCEEEEeccH------HHHHHHHHHhc
Confidence 5677889999999999 66777777875
No 137
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=25.22 E-value=78 Score=20.31 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.5
Q ss_pred CCCCHHHHhhCCEeEEeccc
Q 031827 10 PTITPNELAEADGILLGFPT 29 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~ 29 (152)
+.++.+++..||.||++.-+
T Consensus 29 ~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 29 NELTAEDVASADMVILTKDI 48 (88)
T ss_pred CCCCHHHHHhCCEEEEEecC
Confidence 44567999999999999765
No 138
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=25.13 E-value=1.7e+02 Score=20.90 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=28.3
Q ss_pred hhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031827 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~ 68 (152)
+.||.+|+.-|+ +.+|+.-+.+++. ....=|.+.++++++..
T Consensus 48 RhADiLlVTG~v-----T~~~~e~lkk~Ye----a~PePKiViA~GaCa~~ 89 (148)
T COG3260 48 RHADILLVTGAV-----TRQMREPLKKAYE----AMPEPKIVIAVGACALS 89 (148)
T ss_pred ccccEEEEeccc-----cHHHHHHHHHHHH----hCCCCcEEEEEcccccC
Confidence 567777776554 6677776667653 24467888888887653
No 139
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=24.94 E-value=1.3e+02 Score=20.52 Aligned_cols=46 Identities=7% Similarity=0.009 Sum_probs=31.5
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+.++|++|+....-.......++.|+..+... ..+.+..++++-
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ilv~nK 116 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTA-----SKHMPGVLVGNK 116 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEEC
Confidence 4567799999988776555556677787776531 145777777764
No 140
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=24.65 E-value=1.9e+02 Score=20.14 Aligned_cols=47 Identities=4% Similarity=-0.065 Sum_probs=31.9
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
...+..+|++|+.--.....-...++.|+..+.. ...+.|+.++++=
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~piiiv~nK 113 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCGNIPIVLCGNK 113 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEc
Confidence 3456679999998777655555667778887753 2237788777763
No 141
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=24.61 E-value=86 Score=23.28 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=23.9
Q ss_pred CCCCCeEEEEEecCCCCCCCcchHHHHHHHHH-HcCcEEe
Q 031827 53 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLV-HHGMIFV 91 (152)
Q Consensus 53 ~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~-~~g~~~v 91 (152)
.+-++.+++||++|+ |...++..+...+. ..+..++
T Consensus 20 ~l~~~H~~I~G~TGs---GKS~~~~~ll~~l~~~~~~~~i 56 (229)
T PF01935_consen 20 KLFNRHIAIFGTTGS---GKSNTVKVLLEELLKKKGAKVI 56 (229)
T ss_pred HhccceEEEECCCCC---CHHHHHHHHHHHHHhcCCCCEE
Confidence 445688999998865 45556777777766 5544444
No 142
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=24.59 E-value=1.6e+02 Score=20.07 Aligned_cols=52 Identities=10% Similarity=-0.079 Sum_probs=29.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+-.......-...+..|.+.+..........++|..++++=
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 3456679999988766544433555555555432111123447788777763
No 143
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=24.47 E-value=1e+02 Score=21.99 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=22.9
Q ss_pred hCCEeEEecccc--CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 19 EADGILLGFPTR--FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 19 ~aD~iIlgsP~y--~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
++|+||+....- +......++.|+.++.. .+|+++.+++
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~-------~~k~i~~ic~ 116 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAE-------ANKPVAAICH 116 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHH-------cCCEEEEECc
Confidence 689888765311 11123567777777643 5666666654
No 144
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=24.43 E-value=3.9e+02 Score=22.13 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHh----hCCEeEEeccccCCCc-hH----HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHH
Q 031827 7 SDVPTITPNELA----EADGILLGFPTRFGMM-AA----QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPL 77 (152)
Q Consensus 7 ~d~~~~~~~~i~----~aD~iIlgsP~y~g~~-~~----~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~ 77 (152)
||+.-+ .+++. +...|.+-+|-|.+.. .. .++.+++.+........-..+.+-+++..-+. + -+.
T Consensus 105 dDi~~v-~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~--~---d~~ 178 (415)
T cd01977 105 DDIKAV-AKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQ--G---DTE 178 (415)
T ss_pred CCHHHH-HHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCc--c---cHH
Confidence 455555 44443 3668888899998742 22 23566776654221112234556677654321 2 145
Q ss_pred HHHHHHHHcCcEEec
Q 031827 78 TAITQLVHHGMIFVP 92 (152)
Q Consensus 78 ~~~~~l~~~g~~~v~ 92 (152)
++...|..+|++++.
T Consensus 179 ei~~lL~~~Gl~v~~ 193 (415)
T cd01977 179 VLQKYFERMGIQVLS 193 (415)
T ss_pred HHHHHHHHcCCeEEE
Confidence 677778889999863
No 145
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.41 E-value=1.8e+02 Score=21.74 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=18.2
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
+-+.++|.||+++|.. .++.++..+.
T Consensus 62 ~~~~~~DiViiavp~~------~~~~v~~~l~ 87 (245)
T PRK07634 62 QHVTSVDTIVLAMPPS------AHEELLAELS 87 (245)
T ss_pred HHHhcCCEEEEecCHH------HHHHHHHHHH
Confidence 3467899999999974 4455555554
No 146
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=24.18 E-value=2.6e+02 Score=19.62 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHH--hcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDA--TGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~--l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.+-+.++|.||+..|. ..+++.+++. +.. ...+|+.+.-.+|. .......+.+.+...|..+|
T Consensus 52 ~e~~~~~dvvi~~v~~-----~~~v~~v~~~~~i~~----~l~~g~iiid~sT~------~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 52 AEAAEQADVVILCVPD-----DDAVEAVLFGENILA----GLRPGKIIIDMSTI------SPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp HHHHHHBSEEEE-SSS-----HHHHHHHHHCTTHGG----GS-TTEEEEE-SS--------HHHHHHHHHHHHHTTEEEE
T ss_pred hhHhhcccceEeeccc-----chhhhhhhhhhHHhh----ccccceEEEecCCc------chhhhhhhhhhhhhccceee
Confidence 3445678999998886 4677888777 432 23355555443332 12356778888888999999
Q ss_pred cCCC
Q 031827 92 PIGY 95 (152)
Q Consensus 92 ~~~~ 95 (152)
+-+.
T Consensus 117 dapV 120 (163)
T PF03446_consen 117 DAPV 120 (163)
T ss_dssp EEEE
T ss_pred eeee
Confidence 8654
No 147
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=24.08 E-value=1.3e+02 Score=20.68 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=31.3
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+....-...-...++.|++.+.. ...+++..++++=
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~nK 113 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVANK 113 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEEC
Confidence 4457889999997776544444556777777642 2346788888764
No 148
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=23.73 E-value=1.5e+02 Score=21.14 Aligned_cols=47 Identities=26% Similarity=0.125 Sum_probs=29.6
Q ss_pred HHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
-+..+|++|+..-.....-....+..++++.. ...+.++|+.++++=
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK 127 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNK 127 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeC
Confidence 35789999997655443333445666666543 124578888888763
No 149
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=23.59 E-value=3.9e+02 Score=22.25 Aligned_cols=78 Identities=10% Similarity=-0.066 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHh----hCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031827 7 SDVPTITPNELA----EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 7 ~d~~~~~~~~i~----~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~ 82 (152)
||+.-+ .+++. ....|.+-||-|-++...-...++..+........-..+.+.+++..- . +. ..++...
T Consensus 114 DDi~~v-~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~-~--~d---~~el~~l 186 (427)
T PRK02842 114 LDLEGL-AERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLA-D--VV---EDQLTLE 186 (427)
T ss_pred CCHHHH-HHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCC-c--ch---HHHHHHH
Confidence 555555 45444 345677778888876444445555554432222222344556777642 1 21 3567777
Q ss_pred HHHcCcEEe
Q 031827 83 LVHHGMIFV 91 (152)
Q Consensus 83 l~~~g~~~v 91 (152)
|..+|+.++
T Consensus 187 L~~~Gi~v~ 195 (427)
T PRK02842 187 FKKLGIGVV 195 (427)
T ss_pred HHHcCCeeE
Confidence 788898875
No 150
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.20 E-value=2.4e+02 Score=18.86 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=33.0
Q ss_pred hhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031827 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
...|.+++..|- ..+-.+++.+.. .|-....|.++ ....++.+.+...|+.++++.+
T Consensus 54 ~~iDlavv~~~~------~~~~~~v~~~~~-------~g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 54 EPIDLAVVCVPP------DKVPEIVDEAAA-------LGVKAVWLQPG--------AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp ST-SEEEE-S-H------HHHHHHHHHHHH-------HT-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-
T ss_pred CCCCEEEEEcCH------HHHHHHHHHHHH-------cCCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCc
Confidence 567899998886 777788888753 23344444432 1245567777889999997653
No 151
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=23.04 E-value=1.9e+02 Score=24.50 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031827 52 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 52 ~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
..|+||++++++. .. . ...+...+..+||+++..+.
T Consensus 331 ~~L~GKrv~i~~g--~~-----~-~~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 331 PRLEGKTVMLYVG--GL-----R-PRHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HhcCCCEEEEECC--CC-----c-HHHHHHHHHHCCCEEEEEee
Confidence 4889999888752 11 1 23344467789999986543
No 152
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.95 E-value=47 Score=27.77 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=10.9
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
.++||+|++|||
T Consensus 284 vq~DGliVaTPT 295 (409)
T KOG2178|consen 284 VQGDGLIVATPT 295 (409)
T ss_pred EecceEEEecCC
Confidence 469999999999
No 153
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.79 E-value=1.2e+02 Score=22.44 Aligned_cols=15 Identities=40% Similarity=0.375 Sum_probs=6.2
Q ss_pred CCCcchHHHHHHHHH
Q 031827 70 GGQETTPLTAITQLV 84 (152)
Q Consensus 70 gg~~~~~~~~~~~l~ 84 (152)
||-|+..+++...+.
T Consensus 17 GGfET~ve~L~~~l~ 31 (185)
T PF09314_consen 17 GGFETFVEELAPRLV 31 (185)
T ss_pred CcHHHHHHHHHHHHh
Confidence 344444444444433
No 154
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.64 E-value=1.9e+02 Score=20.57 Aligned_cols=35 Identities=11% Similarity=0.279 Sum_probs=27.0
Q ss_pred CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 55 AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 55 ~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
+-|..+++|.+... ++......++|..+|.++++.
T Consensus 15 ~~K~IAvVG~S~~P----~r~sy~V~kyL~~~GY~ViPV 49 (140)
T COG1832 15 SAKTIAVVGASDKP----DRPSYRVAKYLQQKGYRVIPV 49 (140)
T ss_pred hCceEEEEecCCCC----CccHHHHHHHHHHCCCEEEee
Confidence 56889999876443 455677888999999999974
No 155
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=22.63 E-value=2.1e+02 Score=21.47 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=26.5
Q ss_pred HhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC
Q 031827 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~ 68 (152)
-+.||.+|+.-|+ -.++...++...+.+ .+=|.+.++|++...
T Consensus 65 PR~ADvllVtG~V-t~km~~~l~~~y~qm--------PePK~VIA~GaCA~s 107 (189)
T PRK14813 65 PRQSDLMIVAGTV-TMKMAERVVRLYEQM--------PEPRYVLSMGSCSNC 107 (189)
T ss_pred cccceEEEEeccC-chhhHHHHHHHHHhC--------CCCCEEEEecccccC
Confidence 3458888887666 334444444444443 355788889987643
No 156
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=22.28 E-value=3.1e+02 Score=19.85 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=45.8
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.-+..+|++||.--+-.-.-...++.|++.+.. ...+-++.++++=-.-........++........++.++.
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~-----~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e 146 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFE 146 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEE
Confidence 345789999999988888888888999999853 2245677777764221111111244455555556666553
No 157
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.26 E-value=3.7e+02 Score=20.68 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCCCCCCCCCHHHHhhC--CEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 4 GPKSDVPTITPNELAEA--DGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 4 ~~~~d~~~~~~~~i~~a--D~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
||+...++...+.+.++ |+|++|-..-.. ...+..++.++.+
T Consensus 15 DP~k~~~~~~~~~~~~~gtdai~vGGS~~vt--~~~~~~~v~~ik~ 58 (232)
T PRK04169 15 DPDKPLPDEALEAICESGTDAIIVGGSDGVT--EENVDELVKAIKE 58 (232)
T ss_pred CCCCCCCHHHHHHHHhcCCCEEEEcCCCccc--hHHHHHHHHHHhc
Confidence 77776666655666665 999999887221 2455666666653
No 158
>PRK06444 prephenate dehydrogenase; Provisional
Probab=22.24 E-value=80 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=17.6
Q ss_pred HhhCCEeEEeccccCCCchHHHHHHHHHh
Q 031827 17 LAEADGILLGFPTRFGMMAAQFKAFLDAT 45 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~flD~l 45 (152)
+.+||.|||++|+ ..+..++.++
T Consensus 29 ~~~~DlVilavPv------~~~~~~i~~~ 51 (197)
T PRK06444 29 IKKADHAFLSVPI------DAALNYIESY 51 (197)
T ss_pred ECCCCEEEEeCCH------HHHHHHHHHh
Confidence 5789999999999 4556666554
No 159
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=22.16 E-value=1.5e+02 Score=22.98 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=13.6
Q ss_pred HHHHhhCCEeEEeccc
Q 031827 14 PNELAEADGILLGFPT 29 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~ 29 (152)
++++.++|.|||.||.
T Consensus 64 l~~l~~~d~iiftS~N 79 (266)
T PRK08811 64 LRQALAAPIVVFTSPA 79 (266)
T ss_pred HhhcccCCEEEEECHH
Confidence 4667799999999987
No 160
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=22.15 E-value=2.5e+02 Score=18.99 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=45.2
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..+.++|++|+...+-.-.-...++.|+..+.... -.+.+..++++--.-....+...++.......++..++.
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~----~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e 140 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK----PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFE 140 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS----TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccc----cccccceeeeccccccccccchhhHHHHHHHHhCCEEEE
Confidence 34678999999987777666677788888875421 135677777764221111122344555566666766553
No 161
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=22.09 E-value=97 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.5
Q ss_pred CCCCHHHHhhCCEeEEeccc
Q 031827 10 PTITPNELAEADGILLGFPT 29 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~ 29 (152)
+.++.+++.+||.||+..-+
T Consensus 43 ~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 43 NALTAEDIAAADGVILAADR 62 (85)
T ss_pred CCCCHHHHHhCCEEEEeccC
Confidence 44567999999999999766
No 162
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=21.95 E-value=1.5e+02 Score=23.34 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 031827 125 QPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 125 ~~~~e~~~~~~~lG~~la~~~ 145 (152)
.-.+|..+.++++|+++.+.+
T Consensus 99 ~tteecveiske~gkrvgeel 119 (302)
T COG3643 99 TTTEECVEISKELGKRVGEEL 119 (302)
T ss_pred ccHHHHHHHHHHHHHHhhHhh
Confidence 346788999999999998764
No 163
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=21.83 E-value=1.3e+02 Score=23.67 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=26.4
Q ss_pred CCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 56 GKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 56 gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
++...+|.--|+.+.|...+++.+...|.-.|+.+...
T Consensus 53 ~~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~ 90 (264)
T TIGR03709 53 GRRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF 90 (264)
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC
Confidence 34334444456766677778888988888888888764
No 164
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.57 E-value=4e+02 Score=20.78 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCC-CCCCCCHHHHhh--CCEeEEeccccCCCchHHHHHHHHHhcCc-----c-ccC---CC-CCCeEEEEE---ecC
Q 031827 3 AGPKS-DVPTITPNELAE--ADGILLGFPTRFGMMAAQFKAFLDATGGL-----W-RSQ---QL-AGKPAGIFY---STG 66 (152)
Q Consensus 3 ~~~~~-d~~~~~~~~i~~--aD~iIlgsP~y~g~~~~~~k~flD~l~~~-----~-~~~---~l-~gK~~~~~~---s~g 66 (152)
+||++ +.++-..+.+.+ .|+|++|-.+ +--...+.++++++... + ... .+ ++--+.+|- +++
T Consensus 22 iDP~k~~~~~ei~~~~~~~GTDaImIGGS~--gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~ 99 (240)
T COG1646 22 IDPDKTEEADEIAEAAAEAGTDAIMIGGSD--GVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSD 99 (240)
T ss_pred eCcccccccHHHHHHHHHcCCCEEEECCcc--cccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCC
Confidence 36666 444443556665 5999999876 22236677777777621 1 001 11 111122222 222
Q ss_pred CCCCCCcchHHHHHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCC-CCCCHHHHHHHHHHHHHHH
Q 031827 67 SQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGS-RQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 67 ~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~-~~~~~e~~~~~~~lG~~la 142 (152)
.. -+...+...-...+...+..+++.+|.+..+ + +...+-++.+ ...+.+++..+..|+.++-
T Consensus 100 n~-~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p---------~---~~va~v~~A~~ip~~~~~iaa~y~la~~~~ 163 (240)
T COG1646 100 NP-YWIVGAQVEGAKLVGKLGLEVIPEGYIVVNP---------D---GTVAWVGKAKPIPLDKEDIAAYYALAEKYL 163 (240)
T ss_pred Cc-ccccchhhhhhHHHHhhhheecceEEEEECC---------C---CceeeecccccCCCCcHHHHHHHHHHHHHh
Confidence 11 1111111222233344567888888765432 1 1222222333 4567889998888887654
No 165
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=21.53 E-value=4e+02 Score=20.83 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=36.8
Q ss_pred HhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031827 17 LAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 17 i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
+..+|.||+..|. ..+..+++.+.+. .-+|+.+ ...+.. . ......+...+...|..+++.+..
T Consensus 57 ~~~~dvIi~~vp~------~~~~~v~~~l~~~----l~~g~iv---id~st~--~-~~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 57 LSAPRVVWVMVPH------GIVDAVLEELAPT----LEKGDIV---IDGGNS--Y-YKDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred cCCCCEEEEEcCc------hHHHHHHHHHHhh----CCCCCEE---EECCCC--C-cccHHHHHHHHHhcCCeEEecCCC
Confidence 3458999999998 3566666666431 1244432 333221 1 122444555667789988886543
No 166
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=21.45 E-value=46 Score=27.28 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCCCCCHHHHhhCCEeEEeccc
Q 031827 8 DVPTITPNELAEADGILLGFPT 29 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~ 29 (152)
-+|+.+++.++++|+|++|+-.
T Consensus 54 ~lpeetl~~~~~~DaiL~Gavg 75 (348)
T COG0473 54 PLPEETLESLKKADAILFGAVG 75 (348)
T ss_pred CCCHHHHHHHHhCCEEEEcccC
Confidence 4678889999999999998766
No 167
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=21.33 E-value=2.7e+02 Score=22.36 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=35.0
Q ss_pred eccccCCC--chHHHHHHHHHhcCccccC--CCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 26 GFPTRFGM--MAAQFKAFLDATGGLWRSQ--QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 26 gsP~y~g~--~~~~~k~flD~l~~~~~~~--~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..|+.|+. ..-+...++|-+.-....+ .++|+.++.+|-+ .++...+...+...|+.+.
T Consensus 119 ~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~-------~rv~~Sl~~~~~~~G~~v~ 181 (311)
T PRK14804 119 QVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVH-------NNVVNSLIGITAALGIHLT 181 (311)
T ss_pred CCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCC-------CcHHHHHHHHHHHcCCEEE
Confidence 46777642 2344556666543211123 5789998887631 2456777777777788764
No 168
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=21.25 E-value=2.1e+02 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=23.2
Q ss_pred hCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 19 EADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
.+|+|++..|-|+..-...+..++..+.
T Consensus 96 Gad~v~v~~P~y~~~~~~~i~~yf~~v~ 123 (290)
T TIGR00683 96 GYDCLSAVTPFYYKFSFPEIKHYYDTII 123 (290)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 4899999999998877778888887764
No 169
>PRK08250 glutamine amidotransferase; Provisional
Probab=21.01 E-value=1.3e+02 Score=22.87 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=11.3
Q ss_pred HHhhCCEeEE-ecccc
Q 031827 16 ELAEADGILL-GFPTR 30 (152)
Q Consensus 16 ~i~~aD~iIl-gsP~y 30 (152)
++.++|+||+ |+|..
T Consensus 42 ~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 42 NADGFDLLIVMGGPQS 57 (235)
T ss_pred CccccCEEEECCCCCC
Confidence 5668999877 88854
No 170
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.98 E-value=2.2e+02 Score=22.73 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 39 KAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 39 k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
+.|++.+.+..-.+.|.||+++++..-+.. ......+.+.+...|-.+.+
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~----~~~~~~v~~~L~~AGA~v~g 115 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGAD----DEDVDAVRELLEQAGATVTG 115 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCC----hHHHHHHHHHHHHCCCeEEE
Confidence 344444443333579999999999864332 23467788888888998876
No 171
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.92 E-value=74 Score=26.85 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.6
Q ss_pred HHHHhhCCEeEEeccccCCC
Q 031827 14 PNELAEADGILLGFPTRFGM 33 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~ 33 (152)
.+++.+||.+|++.||.+..
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~ 98 (436)
T COG0677 79 PEELKECDVFIICVPTPLKK 98 (436)
T ss_pred hhhcccCCEEEEEecCCcCC
Confidence 66778999999999999866
No 172
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.89 E-value=55 Score=26.04 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+|++|++||+
T Consensus 174 ~~~DGlIvsTpt 185 (292)
T PRK03378 174 QRSDGLIISTPT 185 (292)
T ss_pred EEccEEEEeCCC
Confidence 469999999998
No 173
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=20.75 E-value=4e+02 Score=20.55 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=37.4
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+.+.+||.||++.|. +..++..+.....+. ....+|+ ++...+. .. ......+...+...|+.+++.
T Consensus 50 ~~~~~~aDivi~~vp~-----~~~~~~v~~~~~~~~-~~~~~g~---iivd~st--~~-~~~~~~l~~~l~~~g~~~~~~ 117 (291)
T TIGR01505 50 RQVTEQADVIFTMVPD-----SPQVEEVAFGENGII-EGAKPGK---TLVDMSS--IS-PIESKRFAKAVKEKGIDYLDA 117 (291)
T ss_pred HHHHhcCCEEEEecCC-----HHHHHHHHcCcchHh-hcCCCCC---EEEECCC--CC-HHHHHHHHHHHHHcCCCEEec
Confidence 3557789999999996 345665541110000 0111233 3333211 11 223456777777788888875
Q ss_pred CC
Q 031827 94 GY 95 (152)
Q Consensus 94 ~~ 95 (152)
++
T Consensus 118 pv 119 (291)
T TIGR01505 118 PV 119 (291)
T ss_pred CC
Confidence 53
No 174
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.60 E-value=1.2e+02 Score=27.08 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=20.5
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
+.++.++|.|||.||. -++.|++.+..
T Consensus 50 l~~L~~yd~iIFTS~n-------AV~~~~~~l~~ 76 (656)
T PRK06975 50 LARLSDYALVVFVSPN-------AVDRALARLDA 76 (656)
T ss_pred HHhCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 4567899999999987 45677777643
No 175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=20.56 E-value=2.8e+02 Score=18.62 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=41.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..-+..+|++|+....-...-...+..|++.+... ...+.|..++++--..........+.........++.++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~----~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREY----ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFF 140 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEE
Confidence 44567799999987775544445566677776431 125788888887422111111123334444455566654
No 176
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=20.37 E-value=2.4e+02 Score=18.41 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=25.9
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
++..+||.|||-|-+.-...-..+...+.++..
T Consensus 32 ~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~ 64 (98)
T PF00919_consen 32 DDPEEADVIIINTCTVRESAEQKSRNRIRKLKK 64 (98)
T ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 455789999999999877777777777777654
No 177
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=20.29 E-value=2.6e+02 Score=19.37 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=29.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+..-.-...-....+.+++.+.. ...++|+.++++=
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~-----~~~~~piilv~NK 108 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ-----HPPDLPLVVLANK 108 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh-----CCCCCcEEEEEeC
Confidence 3457899999986544332223455666666642 2267888888764
No 178
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=20.22 E-value=2e+02 Score=22.10 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=33.4
Q ss_pred hhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 18 AEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 18 ~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
.+.|+.++-.-.-.+.+.+....+++++.. .|+++.+++.-.. ....++...+..+|+.
T Consensus 6 ~D~DGtl~~~~~~~~~~~~~a~~al~~l~~-------~G~~~~~~Tn~~~------~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 6 LDISGVLYISDAKSGVAVPGSQEAVKRLRG-------ASVKVRFVTNTTK------ESKQDLLERLQRLGFD 64 (257)
T ss_pred EeCCCeEEeCCCcccCcCCCHHHHHHHHHH-------CCCeEEEEECCCC------CCHHHHHHHHHHcCCC
Confidence 456888876533122255667778888753 6888877664221 1233444555555554
Done!