Query 031827
Match_columns 152
No_of_seqs 155 out of 1602
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d7n_A Flavodoxin, WRBA-like p 99.9 2.5E-24 8.5E-29 159.2 8.9 145 7-151 42-190 (193)
2 3b6i_A Flavoprotein WRBA; flav 99.9 3.1E-23 1.1E-27 152.7 12.6 136 13-150 62-198 (198)
3 2a5l_A Trp repressor binding p 99.9 5.2E-23 1.8E-27 151.7 13.3 136 12-150 64-200 (200)
4 2zki_A 199AA long hypothetical 99.9 2.2E-22 7.5E-27 148.5 14.0 133 14-151 65-197 (199)
5 1ydg_A Trp repressor binding p 99.9 2.3E-22 7.8E-27 149.9 13.2 136 8-150 67-202 (211)
6 2ark_A Flavodoxin; FMN, struct 99.8 8.4E-20 2.9E-24 134.1 11.9 127 9-150 42-170 (188)
7 2q62_A ARSH; alpha/beta, flavo 99.7 7.6E-18 2.6E-22 129.2 10.0 120 14-150 93-213 (247)
8 2fzv_A Putative arsenical resi 99.7 1.3E-17 4.4E-22 129.9 9.6 120 14-150 118-238 (279)
9 1sqs_A Conserved hypothetical 99.7 6.9E-18 2.3E-22 128.4 7.4 112 7-147 68-179 (242)
10 3hly_A Flavodoxin-like domain; 99.7 3.5E-17 1.2E-21 117.6 10.0 100 14-148 46-145 (161)
11 3fni_A Putative diflavin flavo 99.7 2.8E-17 9.7E-22 118.1 9.3 99 14-147 51-149 (159)
12 4hs4_A Chromate reductase; tri 99.7 1.1E-16 3.7E-21 119.0 11.3 121 14-151 68-190 (199)
13 3fvw_A Putative NAD(P)H-depend 99.7 2.9E-17 9.8E-22 121.3 7.9 119 14-149 62-186 (192)
14 3svl_A Protein YIEF; E. coli C 99.7 5.5E-17 1.9E-21 120.1 8.4 124 8-149 62-187 (193)
15 1rtt_A Conserved hypothetical 99.7 9.4E-17 3.2E-21 118.0 8.4 118 14-148 67-185 (193)
16 5nul_A Flavodoxin; electron tr 99.7 1E-16 3.5E-21 111.8 8.0 101 9-143 35-137 (138)
17 3gfs_A FMN-dependent NADPH-azo 99.7 2.5E-17 8.6E-22 119.4 5.0 112 14-147 58-169 (174)
18 3k1y_A Oxidoreductase; structu 99.7 5.9E-17 2E-21 119.8 6.7 116 7-149 74-190 (191)
19 3u7r_A NADPH-dependent FMN red 99.7 1.4E-15 5E-20 112.3 13.5 119 14-148 62-181 (190)
20 1rli_A Trp repressor binding p 99.7 6.2E-18 2.1E-22 122.9 -0.9 115 7-142 60-182 (184)
21 2vzf_A NADH-dependent FMN redu 99.6 8.2E-17 2.8E-21 119.0 4.4 115 14-149 64-179 (197)
22 3s2y_A Chromate reductase; ura 99.4 3.9E-17 1.3E-21 121.4 0.0 127 6-150 61-189 (199)
23 2q9u_A A-type flavoprotein; fl 99.6 6.2E-15 2.1E-19 119.3 11.4 104 14-150 302-408 (414)
24 2fz5_A Flavodoxin; alpha/beta 99.6 2.9E-15 1E-19 103.7 7.7 99 9-143 36-136 (137)
25 2hpv_A FMN-dependent NADH-azor 99.6 2.2E-15 7.6E-20 111.7 7.2 109 14-143 89-206 (208)
26 4dik_A Flavoprotein; TM0755, e 99.6 5E-15 1.7E-19 120.8 7.4 101 7-141 308-408 (410)
27 2ohh_A Type A flavoprotein FPR 99.6 9.5E-15 3.2E-19 117.6 8.7 102 14-146 302-403 (404)
28 1t0i_A YLR011WP; FMN binding p 99.6 3.4E-15 1.2E-19 109.3 5.3 71 14-92 79-149 (191)
29 3f6r_A Flavodoxin; FMN binding 99.5 2E-14 6.8E-19 101.2 7.5 102 13-144 42-147 (148)
30 1t5b_A Acyl carrier protein ph 99.5 1.9E-13 6.6E-18 100.1 11.9 79 14-92 81-170 (201)
31 3r6w_A FMN-dependent NADH-azor 99.5 5.5E-13 1.9E-17 99.3 12.3 79 14-92 82-180 (212)
32 3f2v_A General stress protein 99.5 3.2E-13 1.1E-17 99.8 10.6 88 5-93 45-147 (192)
33 1f4p_A Flavodoxin; electron tr 99.5 6E-14 2.1E-18 98.5 5.9 100 14-143 42-145 (147)
34 1ycg_A Nitric oxide reductase; 99.5 1.7E-13 5.7E-18 110.1 9.2 100 14-146 297-397 (398)
35 1e5d_A Rubredoxin\:oxygen oxid 99.5 4.4E-13 1.5E-17 107.7 11.4 102 14-148 298-399 (402)
36 3p0r_A Azoreductase; structura 99.4 6.9E-13 2.4E-17 99.1 10.1 79 14-92 87-179 (211)
37 3lcm_A SMU.1420, putative oxid 99.4 6.3E-13 2.1E-17 98.2 8.3 85 7-92 62-159 (196)
38 3u7i_A FMN-dependent NADH-azor 99.4 1.9E-12 6.5E-17 97.6 11.1 79 14-92 89-183 (223)
39 2amj_A Modulator of drug activ 99.4 5.1E-13 1.8E-17 99.3 6.0 85 7-92 59-175 (204)
40 1czn_A Flavodoxin; FMN binding 99.4 3.2E-12 1.1E-16 91.6 9.9 124 13-144 40-166 (169)
41 3ha2_A NADPH-quinone reductase 99.4 1.3E-12 4.4E-17 95.4 7.3 87 6-93 39-139 (177)
42 3l9w_A Glutathione-regulated p 99.4 4.4E-12 1.5E-16 103.5 10.8 118 5-147 279-410 (413)
43 1obo_A Flavodoxin; electron tr 99.3 9.6E-12 3.3E-16 89.1 11.0 127 11-145 38-167 (169)
44 1d4a_A DT-diaphorase, quinone 99.3 2.6E-12 8.9E-17 99.5 6.6 55 14-68 88-151 (273)
45 1yob_A Flavodoxin 2, flavodoxi 99.3 1.7E-11 6E-16 89.0 10.3 125 11-143 38-173 (179)
46 1ag9_A Flavodoxin; electron tr 99.3 4.7E-11 1.6E-15 86.4 11.5 126 12-146 38-168 (175)
47 3tem_A Ribosyldihydronicotinam 99.3 9.4E-12 3.2E-16 94.1 8.0 60 8-68 82-150 (228)
48 2fcr_A Flavodoxin; electron tr 99.3 5.5E-11 1.9E-15 85.8 10.5 124 14-145 40-171 (173)
49 2wc1_A Flavodoxin; electron tr 99.2 5.2E-11 1.8E-15 86.5 9.4 127 11-145 39-176 (182)
50 3rpe_A MDAB, modulator of drug 99.2 1.3E-11 4.3E-16 92.9 5.2 86 7-93 72-189 (218)
51 3klb_A Putative flavoprotein; 99.2 8.1E-11 2.8E-15 84.3 8.2 67 14-91 73-139 (162)
52 1ykg_A SIR-FP, sulfite reducta 99.2 6.2E-11 2.1E-15 85.2 7.5 107 11-147 48-155 (167)
53 4gi5_A Quinone reductase; prot 99.1 1.9E-10 6.4E-15 89.5 7.3 79 14-92 107-212 (280)
54 4ici_A Putative flavoprotein; 99.1 3.1E-10 1E-14 82.1 7.6 67 14-91 82-148 (171)
55 3edo_A Flavoprotein, putative 99.0 9.3E-11 3.2E-15 83.0 2.6 67 14-91 71-137 (151)
56 2hna_A Protein MIOC, flavodoxi 99.0 2E-11 6.7E-16 85.8 -2.0 105 14-145 41-146 (147)
57 2bmv_A Flavodoxin; electron tr 99.0 1.1E-09 3.9E-14 78.0 6.2 123 11-143 36-161 (164)
58 1bvy_F Protein (cytochrome P45 98.9 1.1E-09 3.6E-14 80.7 3.8 102 16-146 64-167 (191)
59 2xod_A NRDI protein, NRDI; fla 98.6 1.2E-07 4.1E-12 64.2 6.7 84 19-142 32-117 (119)
60 2bpo_A CPR, P450R, NADPH-cytoc 98.4 1.5E-06 5.2E-11 74.8 9.2 112 9-147 87-200 (682)
61 3hr4_A Nitric oxide synthase, 98.3 1.1E-06 3.8E-11 65.9 6.4 82 10-93 77-159 (219)
62 1tll_A Nitric-oxide synthase, 97.6 0.00021 7.2E-09 61.6 8.5 84 10-93 48-172 (688)
63 3qe2_A CPR, P450R, NADPH--cyto 97.6 0.00012 4E-09 62.5 6.5 73 19-93 70-143 (618)
64 1rlj_A NRDI protein; flavoprot 97.1 0.0017 5.8E-08 45.0 6.9 87 17-143 41-129 (139)
65 3n3a_C Protein NRDI; ribonucle 96.7 0.0011 3.6E-08 46.9 3.4 89 16-143 55-150 (153)
66 3efe_A THIJ/PFPI family protei 55.5 5.9 0.0002 28.4 2.1 44 14-64 67-113 (212)
67 2yv2_A Succinyl-COA synthetase 54.2 37 0.0013 25.7 6.5 64 14-94 62-129 (297)
68 2yv1_A Succinyl-COA ligase [AD 52.8 50 0.0017 25.0 7.0 64 14-94 62-128 (294)
69 2m1z_A LMO0427 protein; homolo 52.5 10 0.00035 24.7 2.6 22 10-31 48-69 (106)
70 2nu8_A Succinyl-COA ligase [AD 51.3 44 0.0015 25.1 6.5 65 14-95 56-123 (288)
71 2kyr_A Fructose-like phosphotr 45.9 15 0.00051 24.1 2.6 38 10-64 51-88 (111)
72 3mw8_A Uroporphyrinogen-III sy 44.6 11 0.00038 27.3 2.1 38 14-63 45-82 (240)
73 2r48_A Phosphotransferase syst 44.0 17 0.00057 23.6 2.6 37 10-64 48-84 (106)
74 1oi7_A Succinyl-COA synthetase 42.1 84 0.0029 23.6 6.8 64 14-94 56-122 (288)
75 2r4q_A Phosphotransferase syst 41.3 16 0.00056 23.6 2.3 37 10-64 48-84 (106)
76 3k96_A Glycerol-3-phosphate de 39.9 87 0.003 24.2 6.7 27 15-47 95-121 (356)
77 3cpt_A Mitogen-activated prote 36.4 20 0.00068 24.6 2.1 19 29-47 15-33 (143)
78 3qha_A Putative oxidoreductase 36.2 1.3E+02 0.0044 22.2 7.4 67 14-95 65-131 (296)
79 3f5d_A Protein YDEA; unknow pr 34.6 17 0.00058 26.0 1.7 38 19-64 63-101 (206)
80 3re1_A Uroporphyrinogen-III sy 34.3 21 0.00073 26.3 2.3 26 15-47 62-87 (269)
81 4es6_A Uroporphyrinogen-III sy 34.2 22 0.00077 25.8 2.4 41 14-63 53-93 (254)
82 4e15_A Kynurenine formamidase; 33.8 1.3E+02 0.0045 21.6 6.8 42 55-96 80-121 (303)
83 3er6_A Putative transcriptiona 33.1 16 0.00054 26.1 1.3 45 13-64 68-116 (209)
84 2yfk_A Aspartate/ornithine car 32.3 2E+02 0.0067 23.1 8.6 38 54-91 186-223 (418)
85 2b0j_A 5,10-methenyltetrahydro 31.8 1.8E+02 0.0062 22.6 7.1 31 14-46 136-167 (358)
86 1oth_A Protein (ornithine tran 31.5 1.2E+02 0.004 23.5 6.1 65 20-91 102-183 (321)
87 3pfn_A NAD kinase; structural 30.5 19 0.00065 28.5 1.5 12 18-29 245-256 (365)
88 4hcj_A THIJ/PFPI domain protei 30.4 29 0.00098 24.2 2.3 41 17-64 67-109 (177)
89 1f35_A Olfactory marker protei 29.7 37 0.0013 23.0 2.6 18 131-148 118-135 (162)
90 3dcm_X AdoMet, uncharacterized 29.6 36 0.0012 24.4 2.7 36 12-47 146-185 (192)
91 2b6h_A ADP-ribosylation factor 28.8 1.3E+02 0.0046 20.1 5.7 52 11-65 88-139 (192)
92 3gra_A Transcriptional regulat 26.9 29 0.00099 24.5 1.8 40 17-64 69-109 (202)
93 1y81_A Conserved hypothetical 26.6 1E+02 0.0035 20.2 4.5 56 19-95 69-124 (138)
94 1ml4_A Aspartate transcarbamoy 26.3 60 0.002 25.0 3.6 61 26-91 122-185 (308)
95 3ezx_A MMCP 1, monomethylamine 25.9 1.8E+02 0.0062 20.7 7.4 59 36-96 69-129 (215)
96 1z0s_A Probable inorganic poly 25.1 22 0.00074 27.0 0.9 12 18-29 171-182 (278)
97 3oet_A Erythronate-4-phosphate 25.1 1.3E+02 0.0044 23.8 5.4 73 12-93 75-148 (381)
98 4amu_A Ornithine carbamoyltran 25.0 1.2E+02 0.0041 23.9 5.2 59 27-91 149-209 (365)
99 3kkl_A Probable chaperone prot 24.5 30 0.001 25.5 1.5 40 18-64 97-139 (244)
100 3l0i_B RAS-related protein RAB 23.7 1.2E+02 0.004 20.5 4.5 51 10-64 96-146 (199)
101 3pdu_A 3-hydroxyisobutyrate de 23.4 2.2E+02 0.0074 20.7 6.5 65 15-94 53-120 (287)
102 3pdi_A Nitrogenase MOFE cofact 23.3 1.7E+02 0.0059 23.6 6.0 36 52-95 328-363 (483)
103 2h78_A Hibadh, 3-hydroxyisobut 23.2 2.2E+02 0.0076 20.8 6.6 65 15-94 55-122 (302)
104 3cne_A Putative protease I; st 22.3 66 0.0023 21.7 2.9 40 18-64 65-112 (175)
105 1r8s_A ADP-ribosylation factor 21.9 1.6E+02 0.0053 18.7 4.7 47 16-65 64-110 (164)
106 3doj_A AT3G25530, dehydrogenas 21.9 2.5E+02 0.0084 20.8 6.4 66 14-94 72-140 (310)
107 3q98_A Transcarbamylase; rossm 21.8 3E+02 0.01 21.8 9.4 39 53-91 188-226 (399)
108 2f7s_A C25KG, RAS-related prot 21.7 1.9E+02 0.0066 19.5 6.8 74 15-91 103-176 (217)
109 2x77_A ADP-ribosylation factor 21.6 1.8E+02 0.0061 19.1 5.9 49 14-65 84-132 (189)
110 1ky3_A GTP-binding protein YPT 21.5 63 0.0022 21.1 2.7 51 15-65 77-127 (182)
111 1upt_A ARL1, ADP-ribosylation 21.5 1.7E+02 0.0057 18.7 4.9 48 15-65 70-117 (171)
112 3p9z_A Uroporphyrinogen III co 21.5 15 0.0005 26.6 -0.7 42 15-63 33-74 (229)
113 3hwr_A 2-dehydropantoate 2-red 21.4 1.5E+02 0.005 22.2 5.0 28 14-47 81-108 (318)
114 3noq_A THIJ/PFPI family protei 21.2 19 0.00065 26.2 -0.1 33 14-46 60-94 (231)
115 2rk3_A Protein DJ-1; parkinson 21.1 24 0.00083 24.6 0.4 46 12-64 56-107 (197)
116 1f6b_A SAR1; gtpases, N-termin 21.1 1.7E+02 0.0058 19.7 5.0 49 14-65 87-135 (198)
117 3ot1_A 4-methyl-5(B-hydroxyeth 21.0 18 0.00063 25.6 -0.2 45 14-65 64-113 (208)
118 4huj_A Uncharacterized protein 21.0 81 0.0028 22.2 3.3 26 14-45 76-101 (220)
119 3dz8_A RAS-related protein RAB 20.9 1.9E+02 0.0065 19.1 5.6 74 15-92 91-164 (191)
120 1zd9_A ADP-ribosylation factor 20.8 1.8E+02 0.006 19.3 5.0 48 15-65 86-133 (188)
121 2q7x_A UPF0052 protein SP_1565 20.7 57 0.0019 25.3 2.5 28 10-38 176-203 (326)
122 2fg5_A RAB-22B, RAS-related pr 20.7 1.9E+02 0.0066 19.1 6.0 76 13-92 89-164 (192)
123 3n7t_A Macrophage binding prot 20.7 39 0.0013 24.9 1.5 40 18-64 104-146 (247)
124 3l21_A DHDPS, dihydrodipicolin 20.6 1.7E+02 0.0058 22.1 5.2 28 19-46 110-137 (304)
125 1z0f_A RAB14, member RAS oncog 20.5 1.8E+02 0.0061 18.6 5.9 75 14-92 82-156 (179)
126 3afo_A NADH kinase POS5; alpha 20.1 27 0.00094 27.8 0.6 12 18-29 227-238 (388)
127 1dxh_A Ornithine carbamoyltran 20.0 2E+02 0.0069 22.2 5.5 59 27-91 123-184 (335)
128 1pg5_A Aspartate carbamoyltran 20.0 73 0.0025 24.3 3.0 61 26-91 116-180 (299)
No 1
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.91 E-value=2.5e-24 Score=159.19 Aligned_cols=145 Identities=24% Similarity=0.260 Sum_probs=106.2
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+|+++...+++.+||+||||||+|++++++++|.|||++..+|....++||++++|+++|+.+|+.+.++.++...+..+
T Consensus 42 ~~~~~~~~~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~ 121 (193)
T 3d7n_A 42 GNLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQH 121 (193)
T ss_dssp SCCCHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHhHHHHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHC
Confidence 35665336899999999999999999999999999999986666668999999999999886666778899999999999
Q ss_pred CcEEecCCCcCCCCC--ccccccccCCCCCCceecC-CCC-CCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031827 87 GMIFVPIGYTFGAGM--SEMEKVKGGSPYGAGTFAG-DGS-RQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 87 g~~~v~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~-d~~-~~~~~e~~~~~~~lG~~la~~~~~~~~~ 151 (152)
||.+++..+..+... ........|+++|+.++.+ |+. ..|++++++.|+++|++|++.+++|++.
T Consensus 122 G~~~vg~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~~ 190 (193)
T 3d7n_A 122 GGLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKST 190 (193)
T ss_dssp TCEECCCC-------------------CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCEEeCCccCcccccccccccCCCCCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998766532210 0001123466688777653 321 2379999999999999999999998753
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.90 E-value=3.1e-23 Score=152.70 Aligned_cols=136 Identities=56% Similarity=0.930 Sum_probs=109.6
Q ss_pred CHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..+++.+||+||||||+|++++++++|.|||++..+|....++||++++|+++||. |+.+.++.++...+..+||.+++
T Consensus 62 ~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 62 TPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp CGGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred hHHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 47899999999999999999999999999999976654457899999999999886 66677888999999999999998
Q ss_pred CCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
.++.... ......++++.+||...+.+ ++...|+++++++|+++|+++++.++++++
T Consensus 141 ~~~~~~~-~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 141 IGYAAQE-LFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CTTCSGG-GGCCSSCCCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccc-ccccccccCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7654200 00001235567788877754 444678999999999999999999998863
No 3
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.90 E-value=5.2e-23 Score=151.69 Aligned_cols=136 Identities=47% Similarity=0.719 Sum_probs=105.1
Q ss_pred CCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 12 ITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
...+++.+||+||||||+|++++++++|+|||++..+|....++||++++|+++|+..++.+.++.++...|..+||.++
T Consensus 64 ~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 64 ATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp CCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred hhHHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34889999999999999999999999999999997665545789999999999998656656678899999999999999
Q ss_pred cCCCcCCCCCccccccccCCCCCCceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 92 PIGYTFGAGMSEMEKVKGGSPYGAGTFAG-DGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
+..+..... ...+..+.+++...+.+ ++...|+++++++|+++|+++++.++++++
T Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 144 GIPYSEPAL---LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp CCCC---------------CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCccc---cccccCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 876431000 11123455666655544 444578999999999999999999998863
No 4
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.2e-22 Score=148.50 Aligned_cols=133 Identities=40% Similarity=0.639 Sum_probs=105.9
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+||||||+||+++++++|.|||++..+|....++||++++|+++|+..++.+.++.++...+..+||.+++.
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 78999999999999999999999999999999776655679999999999998865666678889999999999999987
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~~~ 151 (152)
.+..+.. ......+.+|+...+.+. ..|+++++++|+++|+++++.+++|++.
T Consensus 145 ~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~~ 197 (199)
T 2zki_A 145 GYGIPEL---FQTTTGGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKCC 197 (199)
T ss_dssp TTCSTHH---HHCSSSCCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCccc---cccccCCCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6542100 000133456666544311 1689999999999999999999998764
No 5
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.89 E-value=2.3e-22 Score=149.90 Aligned_cols=136 Identities=39% Similarity=0.551 Sum_probs=107.9
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g 87 (152)
|++....+++.+||+||||||+||+++++++|+|||++..+|....++||++++|+++|+..++.+.++.++...+..+|
T Consensus 67 d~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g 146 (211)
T 1ydg_A 67 DVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWG 146 (211)
T ss_dssp TSCBCCHHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCC
Confidence 44333489999999999999999999999999999999766655679999999999999876666778899999999999
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
|.+++.++.... -..+.+++|++..+.+. ..|+++++++|+++|++|++.++++++
T Consensus 147 ~~~v~~~~~~~~-----~~~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~~ 202 (211)
T 1ydg_A 147 AVLTPPGYTDEV-----IFKSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLLE 202 (211)
T ss_dssp CEECCCTTCSHH-----HHHTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeCCCCCChh-----hccCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999987643100 00133556676544311 358999999999999999999999875
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.82 E-value=8.4e-20 Score=134.09 Aligned_cols=127 Identities=30% Similarity=0.462 Sum_probs=97.7
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcC-ccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031827 9 VPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGG-LWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~-~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g 87 (152)
+.+...+++.+||+||||||+|++++++++|.|||++.. .| ..++||++++|+++|++.|+...++.++...+..+|
T Consensus 42 l~~~~~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g 119 (188)
T 2ark_A 42 VDEATKEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFG 119 (188)
T ss_dssp TTTCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTT
T ss_pred hhhCCHHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCC
Confidence 344457899999999999999999999999999999864 22 468999999999987666666677888988888899
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhc
Q 031827 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~-~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
|.+++.+...+. .....+|.... ..|+ ++++++|+++|+++++.+++++.
T Consensus 120 ~~~~~~~~~~~~--------~~~~~~g~~~~-----~~p~~~~~~~~~~~~g~~la~~~~~~~~ 170 (188)
T 2ark_A 120 FLVFGVTDYVGK--------KFTLHYGAVVA-----GEPRSEEEKEACRRLGRRLAEWVAIFVD 170 (188)
T ss_dssp CEECCEEEEEET--------TEEESSSEEEE-----SSCCSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cEEeCCCccccc--------cccCCCcceee-----cCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999875321110 00112333222 3577 99999999999999999998864
No 7
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.74 E-value=7.6e-18 Score=129.17 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=92.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc-cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~-~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.++|.+||+|||+||+||+++++++|+|||++...+. ...++||++++++++|+. |+ ..+...+...+..+||.+++
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg-~~a~~~Lr~~l~~lg~~~v~ 170 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QS-FNAVNQMRILGRWMRMITIP 170 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cH-HHHHHHHHHHHHHCCCEEeC
Confidence 7899999999999999999999999999999987553 247899999999998774 43 35678888888899999986
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
..+.++ ..+. .+..++. ..+++..++++.+++++++.+++++.
T Consensus 171 ~~v~i~------------~~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 213 (247)
T 2q62_A 171 NQSSVA------------KAFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTRD 213 (247)
T ss_dssp CCEEES------------SGGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEe------------cchh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544321 1100 1211222 34677889999999999999988764
No 8
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.73 E-value=1.3e-17 Score=129.86 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=92.4
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc-cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR-SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~-~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.++|.+||+|||+||+||+++++++|+|||++...+. ...++||++++++++|+. |+ ..++.++...+..+||.+++
T Consensus 118 ~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg-~~a~~~Lr~~l~~lg~~vv~ 195 (279)
T 2fzv_A 118 RALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QS-FNAVNTLRLLGRWMRMFTIP 195 (279)
T ss_dssp HHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CC-CHHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cH-HHHHHHHHHHHHhcCcEEeC
Confidence 7899999999999999999999999999999987553 246899999999998764 33 35688888888899999986
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
..+.+. ..+. .++.++. ..+++..++++.+++++++.+++++.
T Consensus 196 ~~v~v~------------~~~~--~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~~ 238 (279)
T 2fzv_A 196 NQSSIA------------KAFQ--EFDAAGR-MKPSPYYDRIADVMEELVRFTALVRP 238 (279)
T ss_dssp CCEEET------------TGGG--TBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEe------------cccc--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544321 0000 1221222 34667889999999999999988764
No 9
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.72 E-value=6.9e-18 Score=128.42 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=88.7
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
||+.++ .++|.+||+|||+||+||++++++||+||||+...+....++||++++|+++|+. +...++..+...+..+
T Consensus 68 ~~~~~~-~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~ 144 (242)
T 1sqs_A 68 DDGGVI-KKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYM 144 (242)
T ss_dssp STHHHH-HHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHC
Confidence 555556 7899999999999999999999999999999965433347899999999998764 3446788888888899
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~ 147 (152)
|+.+++. +.. . ..++++..++++++|+++++.++.
T Consensus 145 G~~~v~~-~~~--------------------~-----~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 145 GGQILHQ-VSI--------------------T-----NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp TCEEEEE-EEE--------------------E-----GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred CCeeeeE-EEE--------------------e-----ccCChHHHHHHHHHHHHHHHHHhc
Confidence 9999864 210 1 112346889999999999987654
No 10
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.72 E-value=3.5e-17 Score=117.63 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=81.1
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||||++.++ . +.|++++.. ..++||++++|+++||. + .++..+.+.|...|+.+++.
T Consensus 46 ~~~~~~~d~ii~Gspty~g~~p-~-~~fl~~l~~----~~l~gk~v~~fgs~g~~-g---~a~~~l~~~l~~~G~~~v~~ 115 (161)
T 3hly_A 46 IEAVSSARGIVLGTPPSQPSEA-V-ATALSTIFA----AAHNKQAIGLFDSYGGD-D---EPIDALLAQFRNLGLHTAFP 115 (161)
T ss_dssp HHHHHHCSEEEEECCBSSCCHH-H-HHHHHHHHH----HCCTTSEEEEECCCCSS-B---CCHHHHHHHHHHTTCEESSS
T ss_pred HHHHHhCCEEEEEcCCcCCchh-H-HHHHHHHHh----hhhCCCEEEEEEcCCCC-c---HHHHHHHHHHHHCCCEEecC
Confidence 4456789999999999987754 4 999999853 25899999999999874 3 35788888888999999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~ 148 (152)
++.. ...|+++++++|+++|+++++.+++-
T Consensus 116 ~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~l~~~ 145 (161)
T 3hly_A 116 PIRV-------------------------KDQPTEAIYQQCEESGTDLGQWLTRA 145 (161)
T ss_dssp CBCC-------------------------CSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5432 15699999999999999999877653
No 11
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.72 E-value=2.8e-17 Score=118.07 Aligned_cols=99 Identities=12% Similarity=0.195 Sum_probs=80.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||||++.++ ++.|++++.. ..++||++++|+++||. ++ ++..+.+.|...|+.+++.
T Consensus 51 ~~~~~~~d~ii~Gspty~g~~p--~~~~l~~l~~----~~~~~k~va~fgs~g~~-~~---a~~~l~~~l~~~G~~~v~~ 120 (159)
T 3fni_A 51 RELVGRCTGLVIGMSPAASAAS--IQGALSTILG----SVNEKQAVGIFETGGGD-DE---PIDPLLSKFRNLGLTTAFP 120 (159)
T ss_dssp HHHHHTEEEEEEECCBTTSHHH--HHHHHHHHHH----HCCTTSEEEEECCSSSC-BC---CHHHHHHHHHHTTCEESSS
T ss_pred HHHHHhCCEEEEEcCcCCCCcc--HHHHHHHHHh----hcccCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecC
Confidence 4567779999999999998855 5999999854 35799999999999874 32 4777888888999999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~ 147 (152)
++.+ ...|+++++++|+++|++|++.+++
T Consensus 121 ~~~~-------------------------~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 121 AIRI-------------------------KQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp CBCC-------------------------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEE-------------------------EeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5432 1569999999999999999986654
No 12
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.70 E-value=1.1e-16 Score=119.05 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=91.7
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.++|.+||+|||+||+||+++++.+|+|||++.. +....|+||++++++++|++.|+ ..+..++...|..+|+.+++.
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~il~~lg~~~v~~ 145 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGG-ARAQNHLRQSLVFLDAYVLNR 145 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCS-HHHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCccc-HHHHHHHHHHHHHcCCEEcCC
Confidence 7889999999999999999999999999999976 22358999999999998665444 456778888888899999974
Q ss_pred -CCcCCCCCccccccccCCCCCCceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 031827 94 -GYTFGAGMSEMEKVKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLKGS 151 (152)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~~~~~~e~~~~~~~lG~~la~~~~~~~~~ 151 (152)
.+.++. . ...++.+ +. ..+++..++++.+.++++..+++++..
T Consensus 146 ~~v~i~~------------~--~~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~~~ 190 (199)
T 4hs4_A 146 PEAMIGQ------------V--TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSPR 190 (199)
T ss_dssp SCEEECS------------G--GGTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEeec------------h--hhhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 233210 0 0113221 32 347888999999999999998887653
No 13
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.70 E-value=2.9e-17 Score=121.31 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=88.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc------cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR------SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~------~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g 87 (152)
.+++.+||+|||+||+||+++++.+|+|||++..... ...++||++++++++|+. | ...+...+...+..+|
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~G 139 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFIR 139 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999986431 246899999999998763 3 3445677888888899
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031827 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~ 149 (152)
|.+++....... ....++ ++...++++..++++.+.+++.+.++.|+
T Consensus 140 ~~~v~~~v~~~~--------------~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~~ 186 (192)
T 3fvw_A 140 MHLVDQLTGVPI--------------NSEAWS-TGILKVSAEKLAELSAQADALLSAIENLE 186 (192)
T ss_dssp CEECCCCEEECC--------------CTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred Ceeecceeeccc--------------chhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999975432211 011122 23344689999999999999988776654
No 14
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.69 E-value=5.5e-17 Score=120.06 Aligned_cols=124 Identities=21% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcC
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHG 87 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g 87 (152)
++.++ .+++.+||+|||+||+||+++++.+|+|||++... ....++||++++++++|++.|+ ..+..++...|..+|
T Consensus 62 ~~~~l-~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg 138 (193)
T 3svl_A 62 TVEAL-AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLD 138 (193)
T ss_dssp HHHHH-HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCC
Confidence 33444 78999999999999999999999999999999752 2357899999999987654444 356788888888899
Q ss_pred cEEecCC-CcCCCCCccccccccCCCCCCceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031827 88 MIFVPIG-YTFGAGMSEMEKVKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 88 ~~~v~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~~~~~~e~~~~~~~lG~~la~~~~~~~ 149 (152)
+.+++.+ +.+. .. ...+..+ +. ..+++..++++++.++++..+++++
T Consensus 139 ~~v~~~~~~~~~------------~~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 139 AMVMNKPEFMGG------------VI--QNKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp CEECCSSCEEET------------TG--GGGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred CEEcCCCeEeec------------ch--hhhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998643 2110 00 0123322 32 3578889999999999998776654
No 15
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.68 E-value=9.4e-17 Score=118.02 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+|||+||+||+++++++|+|||++...+. ..++||++++|+++|++.++ ..+...+...+...|+.+++.
T Consensus 67 ~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~ 144 (193)
T 1rtt_A 67 REQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNK 144 (193)
T ss_dssp HHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCS
T ss_pred HHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCC
Confidence 6799999999999999999999999999999976432 46899999999998654443 456778888888899999975
Q ss_pred -CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031827 94 -GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~ 148 (152)
.+.+.. .. ..++.++ ...+++..++++++++++.+.+++.
T Consensus 145 ~~~~~~~------------~~--~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~ 185 (193)
T 1rtt_A 145 PEVMISS------------AQ--NAFDAQG-RLLDDKARELIQQQLQALQLWVREG 185 (193)
T ss_dssp SCEEECS------------GG--GTBCSTT-CBCCHHHHHHHHHHHHHHHC-----
T ss_pred CeEEecc------------hH--hhcCcCC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333210 00 0111122 2346788899999999998776653
No 16
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.68 E-value=1e-16 Score=111.80 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=82.9
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCCchH--HHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEADGILLGFPTRFGMMAA--QFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~--~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+...+++.++|.||||||||++++++ .++.|++++.. .++||++++|+++||.. ..++..+.+.|...
T Consensus 35 ~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~ 106 (138)
T 5nul_A 35 VSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST-----KISGKKVALFGSYGWGD---GKWMRDFEERMNGY 106 (138)
T ss_dssp GGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSC---SHHHHHHHHHHHHT
T ss_pred hhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCC---ChHHHHHHHHHHHC
Confidence 3444567899999999999999999765 69999999864 28999999999998742 24688899999999
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
|+++++.++.+ + ..|++++ ++|+++|+++++
T Consensus 107 G~~~v~~~~~~----------~---------------~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 107 GCVVVETPLIV----------Q---------------NEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp TCEECSCCEEE----------E---------------SSCGGGH-HHHHHHHHHHHT
T ss_pred CCEEECCceEE----------e---------------cCCCHHH-HHHHHHHHHHhc
Confidence 99999765432 1 4688999 999999999875
No 17
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.68 E-value=2.5e-17 Score=119.36 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=87.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+|||+||+||+++++.+|+|||++.. ..++||++++|+++|++.| ...++.++...+..+|+.+++.
T Consensus 58 ~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v~~ 132 (174)
T 3gfs_A 58 KQRVTKADAIVLLSPEYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVIPK 132 (174)
T ss_dssp HHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEecc
Confidence 6799999999999999999999999999999864 3689999999997765443 3456788888888999999976
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~ 147 (152)
+..+.. ..++. ....++++..++++++.+++++.++.
T Consensus 133 ~v~i~~----------------~~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~ 169 (174)
T 3gfs_A 133 QLVLKP----------------VHIDV-ENATVAENIKESIKELVEELSMFAKA 169 (174)
T ss_dssp EEEECG----------------GGEET-TTTEECHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEech----------------hhcCC-CCCccCHHHHHHHHHHHHHHHHHHHc
Confidence 543210 01221 12457788999999999999887764
No 18
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.67 E-value=5.9e-17 Score=119.83 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHH-HHHHHHH
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLT-AITQLVH 85 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~-~~~~l~~ 85 (152)
+++.++ .++|.+||+|||+||+||++++++||+|||++.. ..++||++++++++|+. ++. ..++. +...|..
T Consensus 74 ~~~~~~-~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~-~~~-~~~~~~L~~il~~ 146 (191)
T 3k1y_A 74 TKLEEI-TSALSASDGLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSA-RHS-LVLDYALRPLLSY 146 (191)
T ss_dssp HHHHHH-HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSS-TTT-THHHHTHHHHHHH
T ss_pred HHHHHH-HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCc-chh-hHHHHHHHHHHHH
Confidence 444555 8899999999999999999999999999999974 57899999999998764 333 23444 6777778
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031827 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~ 149 (152)
+|+.+++....+. ...++. . -+++..+++++++++++..+++.+
T Consensus 147 lg~~vv~~~v~~~----------------~~~f~~---~-~~~~~~~rl~~~~~~~~~~~~~~~ 190 (191)
T 3k1y_A 147 MRAVVVPTGVFAA----------------TEDFGG---P-EGAEFNKRIARAAGELASLIVEES 190 (191)
T ss_dssp TTCEECSCCEEEE----------------GGGCSH---H-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEcCcEEEec----------------hhhcCC---C-CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999997643320 001110 0 135567788888888888777654
No 19
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.67 E-value=1.4e-15 Score=112.29 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=90.3
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.++|.+||++||+||+||+++++.+|++||.+.+.+....+.|||+++++++++..|+ ..+...+...|...|+.+++.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg-~~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGA-ALAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTT-HHHHHHHHHHHHTTTCEECCC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhH-HHHHHHHHHHHHHcCCEEccC
Confidence 5689999999999999999999999999999976555578999999999987665444 456778888888899998864
Q ss_pred C-CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031827 94 G-YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~ 148 (152)
+ +.+.. ....++.|+. ..|++..++++.+.+++++.+++.
T Consensus 141 p~~~i~~--------------~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~~ 181 (190)
T 3u7r_A 141 PEAYIQW--------------HAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEKH 181 (190)
T ss_dssp SCCEEEC--------------CGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEec--------------cHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3 21100 0112322332 457778888999999999888763
No 20
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.65 E-value=6.2e-18 Score=122.86 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcccc-------CCCCCCeEEEEEecCCCCC-CCcchHHH
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRS-------QQLAGKPAGIFYSTGSQGG-GQETTPLT 78 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~-------~~l~gK~~~~~~s~g~~~g-g~~~~~~~ 78 (152)
+|+.++ .+++.+||+|||+||+||+++++++|+||||+...+.. ..++||++++|+++|+... +...++..
T Consensus 60 ~~~~~~-~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~ 138 (184)
T 1rli_A 60 DDYDSI-IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQ 138 (184)
T ss_dssp -CHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHH
T ss_pred CCHHHH-HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHH
Confidence 444444 78999999999999999999999999999998643221 2578999999999876311 22345777
Q ss_pred HHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031827 79 AITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 79 ~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la 142 (152)
+...+..+||.+++. +.. . +...+ ....+++.+++|+++|++++
T Consensus 139 l~~~l~~~G~~~~~~-~~~----------~-g~~~~--------~~~~~~~~l~~a~~lg~~~~ 182 (184)
T 1rli_A 139 FEHIFHFMGMSFKGY-VLG----------E-GNRPG--------DILRDHQALSAASRLLKRSD 182 (184)
T ss_dssp HHHHHHHHTCEEEEE-EEE----------E-CSSTT--------GGGGCHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCccceE-EEE----------c-cCCcc--------hhhcCHHHHHHHHHhhhhcc
Confidence 888888899999863 111 0 10001 12347899999999998875
No 21
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.64 E-value=8.2e-17 Score=118.96 Aligned_cols=115 Identities=19% Similarity=0.110 Sum_probs=85.1
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHH-HHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPL-TAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~-~~~~~l~~~g~~~v~ 92 (152)
.+++.+||+|||+||+|++++++.+|+|||++.. ..++||++++|+++|+. ++ ..++. .+...+..+|+.+++
T Consensus 64 ~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~-~~-~~a~~~~l~~~l~~~g~~~v~ 137 (197)
T 2vzf_A 64 VDATCNADGLIVATPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSP-AH-VLALDYGLRPVLHSMGVRHVV 137 (197)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSG-GG-GGHHHHTHHHHHHTTTCSEEC
T ss_pred HHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCc-ch-hhHHHHHHHHHHHHcCCEecc
Confidence 5789999999999999999999999999999863 47899999999997664 33 33454 577788889999997
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLK 149 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~ 149 (152)
.+..+. ++.+ .+..++. .++++..++++++++++++.+++.+
T Consensus 138 ~~v~~~-----------~~~~---~~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~~~ 179 (197)
T 2vzf_A 138 QSFFLV-----------QSQF---SVVDGKL-AVEDDVASQLNNAIDHFRLSLSSEP 179 (197)
T ss_dssp CCEEEE-----------SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCCCG
T ss_pred ceEEEe-----------chhh---cccCCCC-cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 643321 0000 0111222 5899999999999999987665543
No 22
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.41 E-value=3.9e-17 Score=121.41 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHH
Q 031827 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVH 85 (152)
Q Consensus 6 ~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~ 85 (152)
.+++.++ .++|.+||+|||+||+||+++++.+|+|||++...+.. .++||++++++++|++.|+ ..+..++...|..
T Consensus 61 ~~~~~~~-~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~-~~a~~~Lr~~l~~ 137 (199)
T 3s2y_A 61 PAPVLTM-AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGG-ARAQYHLRQSLVF 137 (199)
Confidence 3556666 89999999999999999999999999999999764322 6899999999987554443 3456777778888
Q ss_pred cCcEEecC-CCcCCCCCccccccccCCCCCCceecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 86 HGMIFVPI-GYTFGAGMSEMEKVKGGSPYGAGTFAGD-GSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 86 ~g~~~v~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
+|+.+++. .+.+.. . ...++.+ +. ..+++..++++.+.++++..+++.+.
T Consensus 138 lg~~~v~~~~v~i~~------------~--~~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~~ 189 (199)
T 3s2y_A 138 LDAYVLNRPEAMIGQ------------V--TGKVDAQTLE-LSDVATREFLARQLDALAALARTLSP 189 (199)
Confidence 89999875 433211 0 0112212 22 33566778888888888887776654
No 23
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.60 E-value=6.2e-15 Score=119.33 Aligned_cols=104 Identities=21% Similarity=0.160 Sum_probs=85.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCC-CCCeEEEEEecCCCCCCCcchHHHHHHHHHH-cCcEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQL-AGKPAGIFYSTGSQGGGQETTPLTAITQLVH-HGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l-~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~-~g~~~v 91 (152)
.+++.+||+||||||+|++++++++|+|+|++... .+ +||++++|+++|+. ++ +...+...|.. +|+.++
T Consensus 302 ~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~-~~---a~~~l~~~l~~~~g~~~~ 373 (414)
T 2q9u_A 302 ALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWS-NR---AVPDIVAELRDGCKADVY 373 (414)
T ss_dssp HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSS-CC---HHHHHHHHHHHTSCCBCC
T ss_pred HHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCC-ch---hHHHHHHHHHhhcCcEEc
Confidence 34899999999999999999999999999998642 45 89999999999874 33 46778888888 899988
Q ss_pred cCC-CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 031827 92 PIG-YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKLKG 150 (152)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~~~ 150 (152)
+.+ +.. ...|+++++++|+++|+++++.+++++.
T Consensus 374 ~~~~~~~-------------------------~~~p~~~~~~~~~~~g~~l~~~~~~~~~ 408 (414)
T 2q9u_A 374 DEKGITF-------------------------KFNYTEELLEQAYNAGVDLGKRAIAYCE 408 (414)
T ss_dssp CSSCEEE-------------------------ESCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEE-------------------------eeCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 753 221 0458999999999999999998887764
No 24
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.59 E-value=2.9e-15 Score=103.67 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCCCCHHHHhhCCEeEEeccccCCCchHH--HHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEADGILLGFPTRFGMMAAQ--FKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~aD~iIlgsP~y~g~~~~~--~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+...+++.++|.|||+||+|+++++++ +|.|+|++.. .++||++++|+++|+.. ..+...+.+.+...
T Consensus 36 ~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-----~l~~k~~~~~~t~g~~~---~~~~~~l~~~l~~~ 107 (137)
T 2fz5_A 36 FEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-----KLKGKKVGLFGSYGWGS---GEWMDAWKQRTEDT 107 (137)
T ss_dssp TTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----GCSSCEEEEEEEESSCC---SHHHHHHHHHHHHT
T ss_pred cccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-----hcCCCEEEEEEecCCCC---chHHHHHHHHHHHC
Confidence 34445788999999999999999999999 9999999853 68999999999998742 24688888888889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
|+.+++ .+.. . ..|++ +++++++|+++++
T Consensus 108 g~~~~~-~~~~----------~---------------g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 108 GATVIG-TAIV----------N---------------EMPDN--APECKELGEAAAK 136 (137)
T ss_dssp TCEEEE-EEEE----------E---------------SSSSS--CTHHHHHHHHHHT
T ss_pred CCEEcC-cEEE----------e---------------eCCCh--HHHHHHHHHHHhc
Confidence 999983 3321 1 23544 9999999999864
No 25
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.59 E-value=2.2e-15 Score=111.67 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLV 84 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~ 84 (152)
.+++.+||+|||+||+||+++++++|+||||+.... ....++||++++|+++|+..++.......+...+.
T Consensus 89 ~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~ 168 (208)
T 2hpv_A 89 TDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILN 168 (208)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHH
Confidence 678999999999999999999999999999987521 12358999999999987654432344566666777
Q ss_pred HcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 85 HHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 85 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
..|+.+++. +.. . +. +......++.+++++++++++++
T Consensus 169 ~~G~~~~~~-~~~----------~-----~~-----~~~~~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 169 FIGVDQVDG-LFI----------E-----GI-----DHFPDRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp HTTCCEEEE-EEE----------E-----CT-----TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred hCCCCeeeE-EEE----------c-----cc-----cCCHHHHHHHHHHHHHHHHHHHh
Confidence 889988753 111 0 01 00011234567888888888765
No 26
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.56 E-value=5e-15 Score=120.85 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+|++++ ++++.+||+||||||||++++.++|+.|++.+.. ..++||++++|+|+||. |++ .+.+.+.|..+
T Consensus 308 ~~~s~i-~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~----~~~~~K~~~~FGSyGWs-g~a---~~~~~~~l~~~ 378 (410)
T 4dik_A 308 PAISEI-LKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIID----KANYEKPVLVFGVHGWA-PSA---ERTAGELLKET 378 (410)
T ss_dssp CCHHHH-HHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHH----HCCCCCEEEEEEECCCC-CTT---SCCHHHHHTTS
T ss_pred CCHHHH-HHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHh----cccCCCEEEEEECCCCC-cHH---HHHHHHHHHHC
Confidence 455566 7889999999999999999999999999999865 36799999999999985 444 34466777889
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYF 141 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~l 141 (152)
|+++++..... ...++++++++|.+++++-
T Consensus 379 ~~~~v~~~~~~-------------------------~~~~de~~lee~~~~~~~~ 408 (410)
T 4dik_A 379 KFRILSFTEIK-------------------------GSNMDERKIEEAISLLKKE 408 (410)
T ss_dssp SCEEEEEEEEC-------------------------STTCCHHHHHHHHHHHHHH
T ss_pred CCEEECcEEEE-------------------------CCCCCHHHHHHHHHHHHHh
Confidence 99998753221 1357888899999888764
No 27
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.55 E-value=9.5e-15 Score=117.60 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=83.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.+||+||||||+|++++++++|+|+|++...+... ++||++++|+++|+. ++ +...+...|..+|+.+++.
T Consensus 302 ~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~-~~---a~~~l~~~l~~~g~~~~~~ 376 (404)
T 2ohh_A 302 VKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGN-GG---ATGTMKELLAEAGFDVACE 376 (404)
T ss_dssp HHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSS-CC---HHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCC-Ch---hHHHHHHHHHHCCCEEEeE
Confidence 458999999999999999999999999999997654334 799999999998874 32 4667888888899999874
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~ 146 (152)
+.. . ..++++++++++++++++++.++
T Consensus 377 -~~~----------~---------------~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 377 -EEV----------Y---------------YVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp -EEE----------E---------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -EEE----------e---------------eCCCHHHHHHHHHHHHHHHHHHh
Confidence 321 1 35789999999999999987664
No 28
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.55 E-value=3.4e-15 Score=109.31 Aligned_cols=71 Identities=21% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+++.+||+|||+||+||+++++++|+|||++.. .++||++++|++ |+. ++ ..++..+...+..+||.+++
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~-~~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGH-GG-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETT-TT-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCc-ch-hhHHHHHHHHHHHCCCEEcc
Confidence 6899999999999999999999999999999863 589999998865 553 33 35678888888889999987
No 29
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.53 E-value=2e-14 Score=101.17 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=80.2
Q ss_pred CHHHHh-hCCEeEEeccccC---CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031827 13 TPNELA-EADGILLGFPTRF---GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 13 ~~~~i~-~aD~iIlgsP~y~---g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
..+++. ++|.||||+|||+ |.+++.++.|++++.. ..++||++++|+++....++...+...+.+.|...|+
T Consensus 42 ~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~ 117 (148)
T 3f6r_A 42 SAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGA 117 (148)
T ss_dssp CCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTC
T ss_pred CHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 345677 9999999999998 5999999999999864 3689999999998432223344568889999999999
Q ss_pred EEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031827 89 IFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~ 144 (152)
.+++.+..+ . ..|++ ++++++++++++++.
T Consensus 118 ~~~~~~~~~----------~---------------~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 118 TIIAEGLKM----------E---------------GDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp EECSCCEEE----------E---------------SSGGG-CHHHHHHHHHHHHHT
T ss_pred EEeecceEe----------e---------------cCcch-HHHHHHHHHHHHHhh
Confidence 998764331 1 35777 999999999998763
No 30
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.51 E-value=1.9e-13 Score=100.15 Aligned_cols=79 Identities=20% Similarity=0.133 Sum_probs=63.5
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc---------cCCCCCCeEEEEEecCCCCCC--CcchHHHHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR---------SQQLAGKPAGIFYSTGSQGGG--QETTPLTAITQ 82 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~---------~~~l~gK~~~~~~s~g~~~gg--~~~~~~~~~~~ 82 (152)
.+++.+||+|||+||+||+++++++|+||||+..... ...++||++++|+++|+..++ .+.+...+...
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~ 160 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF 160 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHH
Confidence 5789999999999999999999999999999974211 135899999999998875433 23366677777
Q ss_pred HHHcCcEEec
Q 031827 83 LVHHGMIFVP 92 (152)
Q Consensus 83 l~~~g~~~v~ 92 (152)
+...|+.+++
T Consensus 161 l~~~G~~~~~ 170 (201)
T 1t5b_A 161 LGFIGITDVN 170 (201)
T ss_dssp HHHTTCCCEE
T ss_pred HhhcCcceeE
Confidence 8888998875
No 31
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.48 E-value=5.5e-13 Score=99.27 Aligned_cols=79 Identities=27% Similarity=0.207 Sum_probs=61.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc-------c------cCCCCCCeEEEEEecCC--CCCCC-----c
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-------R------SQQLAGKPAGIFYSTGS--QGGGQ-----E 73 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~-------~------~~~l~gK~~~~~~s~g~--~~gg~-----~ 73 (152)
.++|.+||+|||++|+||+++++++|+||||+.... . .+.++||++.+++++|. ..++. .
T Consensus 82 ~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 161 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMN 161 (212)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGC
T ss_pred HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchh
Confidence 678999999999999999999999999999996421 0 34689999999999883 22221 2
Q ss_pred chHHHHHHHHHHcCcEEec
Q 031827 74 TTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 74 ~~~~~~~~~l~~~g~~~v~ 92 (152)
.....+...|...|++.++
T Consensus 162 ~~~~~l~~~l~~~G~~~~~ 180 (212)
T 3r6w_A 162 HADPWLRTALGFIGIDEVT 180 (212)
T ss_dssp CSHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHHHHHHCCCceeE
Confidence 2345666677778998885
No 32
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.47 E-value=3.2e-13 Score=99.85 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=65.7
Q ss_pred CCCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---c--cCCCCCCeEEEEEecCCCC-----CCC-c
Q 031827 5 PKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---R--SQQLAGKPAGIFYSTGSQG-----GGQ-E 73 (152)
Q Consensus 5 ~~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---~--~~~l~gK~~~~~~s~g~~~-----gg~-~ 73 (152)
.++|+..+ .+++.+||+|||++|+||+++++++|.||||+.... . .+.|+||++.+++|+|+.. ++. .
T Consensus 45 ~~~dv~~~-~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~ 123 (192)
T 3f2v_A 45 GKIDVAAE-QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVG 123 (192)
T ss_dssp CCCCHHHH-HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSC
T ss_pred CchhHHHH-HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccc
Confidence 34566666 899999999999999999999999999999986431 1 2478999999999988642 111 1
Q ss_pred chHH----HHHHHHHHcCcEEecC
Q 031827 74 TTPL----TAITQLVHHGMIFVPI 93 (152)
Q Consensus 74 ~~~~----~~~~~l~~~g~~~v~~ 93 (152)
..+. .+...+...||+.++.
T Consensus 124 ~~~~~~l~pl~~~~~f~G~~~~~~ 147 (192)
T 3f2v_A 124 CSVAEVLRPFELTAKYCNADYRPP 147 (192)
T ss_dssp SCHHHHHHHHHHHHHHTTCEECCC
T ss_pred cCHHHHHHHHHHHHHhCCCeEeee
Confidence 1233 3455667789998863
No 33
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.46 E-value=6e-14 Score=98.47 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=77.7
Q ss_pred HHHHhh-CCEeEEeccccC-CC--chHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 14 PNELAE-ADGILLGFPTRF-GM--MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 14 ~~~i~~-aD~iIlgsP~y~-g~--~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
.+++.+ +|.|||++|+|+ +. +++.++.|+|++.. ..++||++++|++++...++...+...+...|...|+.
T Consensus 42 ~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~ 117 (147)
T 1f4p_A 42 AGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAE 117 (147)
T ss_dssp STTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred HHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCe
Confidence 446788 999999999995 66 78899999999864 36899999999996543344556788899999999999
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
+++.+..+ . ..|++ ++++++++++++++
T Consensus 118 ~~~~~~~~---------------------~----~~p~~-~~~~~~~~~~~l~~ 145 (147)
T 1f4p_A 118 IVQDGLRI---------------------D----GDPRA-ARDDIVGWAHDVRG 145 (147)
T ss_dssp ECSCCEEE---------------------E----SCGGG-GHHHHHHHHHHHHT
T ss_pred Ehhccccc---------------------c----cCchh-HHHHHHHHHHHHHh
Confidence 98754321 1 23555 88899999998865
No 34
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.46 E-value=1.7e-13 Score=110.09 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=82.4
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||+|++++++.+|.|+|++.. ..++||++++|+++||. + .+...+.+.|...|+.+++.
T Consensus 297 ~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~----~~~~~k~~~~~~s~g~~-~---~a~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 297 IKEILDARAVLVGSPTINNDILPVVSPLLDDLVG----LRPKNKVGLAFGAYGWG-G---GAQKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHH----HCCSSCEEEEEEEESSS-C---CHHHHHHHHHHHTTCEESCS
T ss_pred HHHHHHCCEEEEECCccCccchHHHHHHHHHHhc----cccCCCEEEEEEeCCCc-h---HHHHHHHHHHHHCCeEEecC
Confidence 4567899999999999999999999999999864 25799999999998763 2 35778888888899999875
Q ss_pred C-CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031827 94 G-YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~ 146 (152)
+ +.+ . ..|+++++++++++|+++++.++
T Consensus 369 ~~~~~----------~---------------~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 369 PGPTV----------Q---------------WVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp SCCEE----------E---------------SSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEE----------e---------------cCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 321 1 35789999999999999987653
No 35
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.46 E-value=4.4e-13 Score=107.74 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=84.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|+||||||+|+++++++++.|+|++.. ..++||++++|+++|+. ..+...+.+.|..+|+.+++.
T Consensus 298 ~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~----~~l~~k~~~~f~t~g~~----~~a~~~l~~~l~~~G~~~~~~ 369 (402)
T 1e5d_A 298 MSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG----LRPQNKIGGAFGSFGWS----GESTKVLAEWLTGMGFDMPAT 369 (402)
T ss_dssp HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH----TCCCSCEEEEEEEESSS----CHHHHHHHHHHHHTTCBCCSC
T ss_pred HHHHHHCCEEEEECCccCCCchHHHHHHHHHhhh----cccCCCEEEEEEcCCCc----cHHHHHHHHHHHHCCCEEecC
Confidence 4567999999999999999999999999999864 36899999999998763 345788888888899998864
Q ss_pred CCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 031827 94 GYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~~ 148 (152)
++.+ . ..|++++++.++++|+++++.++..
T Consensus 370 ~~~~---------------------~----~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 370 PVKV---------------------K----NVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp CEEE---------------------E----SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEE---------------------e----eCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3321 1 3578999999999999999887654
No 36
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.43 E-value=6.9e-13 Score=99.08 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=61.8
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCCCCCC-----cchHHHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQGGGQ-----ETTPLTA 79 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~~gg~-----~~~~~~~ 79 (152)
.+++.+||+|||++|+||+++++++|+||||+.... ..+.|+||++.+++++|+..++. ......+
T Consensus 87 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l 166 (211)
T 3p0r_A 87 LNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYV 166 (211)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHH
T ss_pred HHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHH
Confidence 778999999999999999999999999999986431 12368999999999987764332 2345566
Q ss_pred HHHHHHcCcEEec
Q 031827 80 ITQLVHHGMIFVP 92 (152)
Q Consensus 80 ~~~l~~~g~~~v~ 92 (152)
...|...|+..+.
T Consensus 167 ~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 167 ASMMGFFGATNME 179 (211)
T ss_dssp HHHHHHTTCCSCE
T ss_pred HHHHHhCCCCeee
Confidence 6677778887664
No 37
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.41 E-value=6.3e-13 Score=98.20 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCC--CC--CCc
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQ--GG--GQE 73 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~--~g--g~~ 73 (152)
+|+..+ .++|.+||+|||++|+||+++|+.+|+||||+.... ..+.|+||++.+++|+|+. .. +..
T Consensus 62 ~~~~~~-~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~ 140 (196)
T 3lcm_A 62 AEMEKY-RDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQD 140 (196)
T ss_dssp GGGHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSC
T ss_pred HHHHHH-HHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhcc
Confidence 344444 789999999999999999999999999999996431 1247899999999998765 11 101
Q ss_pred chHHHHHHHHHHcCcEEec
Q 031827 74 TTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 74 ~~~~~~~~~l~~~g~~~v~ 92 (152)
.....+...+...|++.++
T Consensus 141 ~~~~~l~~~l~~~G~~~~~ 159 (196)
T 3lcm_A 141 YGKVLKKQILKPCAISPVK 159 (196)
T ss_dssp TTHHHHHHTTGGGTCCCEE
T ss_pred CHHHHHHHHHHhcCCceee
Confidence 1123444555567777664
No 38
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.41 E-value=1.9e-12 Score=97.60 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=61.5
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---c------cCCC-CCCeEEEEEecCCCCCCC------cchHH
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---R------SQQL-AGKPAGIFYSTGSQGGGQ------ETTPL 77 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---~------~~~l-~gK~~~~~~s~g~~~gg~------~~~~~ 77 (152)
.+++.+||+|||++|+||+++++.+|+||||+.... . .+.+ +||++.+++++|+..++. .....
T Consensus 89 ~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~ 168 (223)
T 3u7i_A 89 LQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHK 168 (223)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHH
T ss_pred HHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHH
Confidence 789999999999999999999999999999987531 0 1346 899999999987754331 12345
Q ss_pred HHHHHHHHcCcEEec
Q 031827 78 TAITQLVHHGMIFVP 92 (152)
Q Consensus 78 ~~~~~l~~~g~~~v~ 92 (152)
.+...|...|+..+.
T Consensus 169 ~l~~~l~~~G~~~~~ 183 (223)
T 3u7i_A 169 YLKAMFNFLGIEDYQ 183 (223)
T ss_dssp HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHCCCceeE
Confidence 566677778998875
No 39
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.38 E-value=5.1e-13 Score=99.34 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=62.3
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCc-c-------------------ccCCCCCCeEEEEEecC
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-W-------------------RSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~-~-------------------~~~~l~gK~~~~~~s~g 66 (152)
+|+.++ .++|.+||+|||++|+||+++++++|+||||+... | ....++||++.+++++|
T Consensus 59 ~d~~~~-~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g 137 (204)
T 2amj_A 59 YDVKAE-VQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWN 137 (204)
T ss_dssp CCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECS
T ss_pred ccHHHH-HHHHHhCCEEEEECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCC
Confidence 455555 88999999999999999999999999999996421 1 12468999999999987
Q ss_pred CCCC-----CC---cchHH----HHHHHHHHcCcEEec
Q 031827 67 SQGG-----GQ---ETTPL----TAITQLVHHGMIFVP 92 (152)
Q Consensus 67 ~~~g-----g~---~~~~~----~~~~~l~~~g~~~v~ 92 (152)
+..+ +. ...+. .+...+...||..++
T Consensus 138 ~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G~~~~~ 175 (204)
T 2amj_A 138 APMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLP 175 (204)
T ss_dssp SCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTTCEECC
T ss_pred CChHHHccCcccccCCCHHHHHHHHHHHHHHcCCeecc
Confidence 6421 10 11222 355667778999875
No 40
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.37 E-value=3.2e-12 Score=91.61 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=83.1
Q ss_pred CHHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHHcCcE
Q 031827 13 TPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~-~g-g~~~~~~~~~~~l~~~g~~ 89 (152)
..+++.++|.||||+|+|+ +.+++.++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|+.
T Consensus 40 ~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~ 115 (169)
T 1czn_A 40 DASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQ 115 (169)
T ss_dssp CGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCE
T ss_pred CHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 3568899999999999998 6789999999999853 47899999999997653 33 3456788888888889999
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHH
Q 031827 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGI 144 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~ 144 (152)
+++.-...++.+.....+..|.+.|. .++ . ..+++++.++++++++++.+.
T Consensus 116 ~~~~~~~~g~~~~~s~~~~~~~~~gl-~~~--~-~~~~~~~~~~~~~w~~~~~~~ 166 (169)
T 1czn_A 116 TVGYWPIEGYDFNESKAVRNNQFVGL-AID--E-DNQPDLTKNRIKTWVSQLKSE 166 (169)
T ss_dssp ECCCEECTTCCCSCCTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcceecchheeCCeeeee-eec--C-CCccccCHHHHHHHHHHHHHH
Confidence 99731111111111111111111221 111 1 235677899999999888654
No 41
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.36 E-value=1.3e-12 Score=95.40 Aligned_cols=87 Identities=26% Similarity=0.340 Sum_probs=64.7
Q ss_pred CCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc----ccCCCCCCeEEEEEecCCCC-----CCC----
Q 031827 6 KSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW----RSQQLAGKPAGIFYSTGSQG-----GGQ---- 72 (152)
Q Consensus 6 ~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~----~~~~l~gK~~~~~~s~g~~~-----gg~---- 72 (152)
++|+.+. .+++.+||.|||++|+||+++|+.+|.||||+.... ..+.|+||++.+++|+|+.. ++.
T Consensus 39 ~~D~~~~-~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~ 117 (177)
T 3ha2_A 39 DFNVEQE-QSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFT 117 (177)
T ss_dssp TCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSC
T ss_pred cccHHHH-HHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCC
Confidence 4556666 899999999999999999999999999999986431 13578999999999987642 111
Q ss_pred -cchHHHHHHHHHHcCcEEecC
Q 031827 73 -ETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 73 -~~~~~~~~~~l~~~g~~~v~~ 93 (152)
+..+..+...+...||+.++.
T Consensus 118 ~~~~l~p~~~~~~~~G~~~~~~ 139 (177)
T 3ha2_A 118 ISELMRPFEAFANKTKMMYLPI 139 (177)
T ss_dssp HHHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHhCCCeEeCe
Confidence 112233344566789998853
No 42
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.35 E-value=4.4e-12 Score=103.55 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=83.0
Q ss_pred CCCCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc-----ccCCCCCCeEEEEEecCCCCC--------C
Q 031827 5 PKSDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----RSQQLAGKPAGIFYSTGSQGG--------G 71 (152)
Q Consensus 5 ~~~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~-----~~~~l~gK~~~~~~s~g~~~g--------g 71 (152)
.++|+... .+++.+||+|||++|+||+++|+.+|.||||+.... ....|+||++.+++|+|+..+ +
T Consensus 279 ~~~d~~~~-~~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~ 357 (413)
T 3l9w_A 279 FNIDIAAE-QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPG 357 (413)
T ss_dssp SCCCHHHH-HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCS
T ss_pred CcHHHHHH-HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccC
Confidence 35666666 899999999999999999999999999999986432 123689999999998876321 1
Q ss_pred CcchHHHHHHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 031827 72 QETTPLTAITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPS-ELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 72 ~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~-~e~~~~~~~lG~~la~~~~~ 147 (152)
.+..+..+...+...||.+++. +.. +|. ...+ ++..+.++++.+++...+++
T Consensus 358 ~~~~l~~l~~~~~~~G~~~l~~-~~~---------------~g~--------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 358 FDVLSQPLQATAIYCGLNWLPP-FAM---------------HCT--------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp GGGGGHHHHHHHHHTTCEECCC-EEE---------------CCS--------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhCCCeecce-EEE---------------cCC--------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1123456666777889999863 211 111 2233 44467788888888876654
No 43
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.35 E-value=9.6e-12 Score=89.13 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=83.3
Q ss_pred CCCHHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHHcC
Q 031827 11 TITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVHHG 87 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~-~g-g~~~~~~~~~~~l~~~g 87 (152)
+...+++.++|.||||+|+|+ +.+++.++.|++++.. ..++||++++|++++.. .+ ....++..+.+.|...|
T Consensus 38 ~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g 113 (169)
T 1obo_A 38 QAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRG 113 (169)
T ss_dssp TCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTT
T ss_pred cCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCC
Confidence 334578999999999999996 6677889999999863 47899999999998652 23 23467888888888899
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031827 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~ 145 (152)
+.+++.-...++.+.....+..+.+.|. ... . ..+++.+.++++++++++.+.+
T Consensus 114 ~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~--~-~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 114 GKTVGYWSTDGYDFNDSKALRNGKFVGL-ALD--E-DNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp CEECCCEECTTCCCSCCTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHHHHH
T ss_pred CEEEEeecCCCcccccchhhcCCceeeE-Eee--C-CCccccCHHHHHHHHHHHHHHh
Confidence 9998742112211111111111111221 111 1 1245678888999998886644
No 44
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.31 E-value=2.6e-12 Score=99.48 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccc---------cCCCCCCeEEEEEecCCC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWR---------SQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~---------~~~l~gK~~~~~~s~g~~ 68 (152)
.++|.+||+|||++|+||+++++.+|.||||+..... .+.++||++.+++|+|+.
T Consensus 88 ~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 88 QKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 5679999999999999999999999999999865321 257899999999998764
No 45
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.30 E-value=1.7e-11 Score=88.96 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=86.1
Q ss_pred CCCHHHHhhCCEeEEeccccC-CCch--------HHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHH
Q 031827 11 TITPNELAEADGILLGFPTRF-GMMA--------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTA 79 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~--------~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~-~g-g~~~~~~~~ 79 (152)
+...+++.++|.||||+|||+ |.++ ..++.|++++.. ..++||++++|++++.. .+ ....++..+
T Consensus 38 ~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l 113 (179)
T 1yob_A 38 RVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDALGEL 113 (179)
T ss_dssp GCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHHHHH
T ss_pred hCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHH
Confidence 344678999999999999999 8899 899999999864 37899999999996542 22 234578888
Q ss_pred HHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 80 ITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 80 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
.+.|...|+.+++.-...++.|.....+..+.+.|. ..+ . ..+++.+.++++++.+.+..
T Consensus 114 ~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl-~~d--~-~~~~~~~~~~i~~w~~~l~~ 173 (179)
T 1yob_A 114 YSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGL-ALD--L-DNQSGKTDERVAAWLAQIAP 173 (179)
T ss_dssp HHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSE-EEC--T-TTCGGGHHHHHHHHHHHHGG
T ss_pred HHHHHHCCCEEEEeeccCCCCcccchhhhcCceecc-ccC--C-CCCCcccHHHHHHHHHHHHH
Confidence 888888999999754444444333333332233332 121 1 12345678888888887754
No 46
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.28 E-value=4.7e-11 Score=86.36 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=84.9
Q ss_pred CCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC---cchHHHHHHHHHHcC
Q 031827 12 ITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ---ETTPLTAITQLVHHG 87 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~---~~~~~~~~~~l~~~g 87 (152)
...+++.++|.||||+||| .+.+++.++.|++.+.. ..++||++++|++++.. +.. ..++..+.+.|...|
T Consensus 38 ~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~-~~~~~f~~a~~~l~~~l~~~G 112 (175)
T 1ag9_A 38 SSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQE-DYAEYFCDALGTIRDIIEPRG 112 (175)
T ss_dssp CCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTT-TTTTSTTHHHHHHHHHHTTTT
T ss_pred CChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhh----cccCCCEEEEEEECCCc-chhHHHHHHHHHHHHHHHHCC
Confidence 3467899999999999997 58888889999999863 37899999999996532 222 367888888888899
Q ss_pred cEEecCCCcCCCCCccccccc-cCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031827 88 MIFVPIGYTFGAGMSEMEKVK-GGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITK 146 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~ 146 (152)
+.+++.--..++.|..+..+. .+.+.|. ..+ . ..+++++.+++.++++++.+.+.
T Consensus 113 ~~~v~~~~~~g~~~~~s~~~~~~~~~~gl-~~~--~-~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 113 ATIVGHWPTAGYHFEASKGLADDDHFVGL-AID--E-DRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp CEECCCEECTTCCCSCCSCEEETTEESSE-EEC--T-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCCCcccccchheeeCCeEEee-ecC--C-CCcccccHHHHHHHHHHHHHHhh
Confidence 999974222333222111111 1111221 121 1 23567788999999999876553
No 47
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.28 E-value=9.4e-12 Score=94.11 Aligned_cols=60 Identities=27% Similarity=0.307 Sum_probs=49.4
Q ss_pred CCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc---------ccCCCCCCeEEEEEecCCC
Q 031827 8 DVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW---------RSQQLAGKPAGIFYSTGSQ 68 (152)
Q Consensus 8 d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~---------~~~~l~gK~~~~~~s~g~~ 68 (152)
|+... .+++.+||+|||++|+||+++++.+|+||||+.... ..+.|+||++.+++|+|+.
T Consensus 82 d~~~~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 82 DITDE-QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp HHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred HHHHH-HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 33334 778999999999999999999999999999986431 1357999999999998754
No 48
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.25 E-value=5.5e-11 Score=85.78 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=82.9
Q ss_pred HHHHhhCCEeEEeccccC-CCc----hHHHHHHH-HHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHHHHHHHH
Q 031827 14 PNELAEADGILLGFPTRF-GMM----AAQFKAFL-DATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTAITQLVH 85 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~-g~~----~~~~k~fl-D~l~~~~~~~~l~gK~~~~~~s~g~~-~g-g~~~~~~~~~~~l~~ 85 (152)
..++.++|.||||+|||+ |.+ +..++.|+ +++.. ..++||++++|++++.. .+ ....++..+.+.|..
T Consensus 40 ~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~ 115 (173)
T 2fcr_A 40 PQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAK 115 (173)
T ss_dssp GGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHH
T ss_pred hhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHH
Confidence 567889999999999999 899 89999999 98853 47899999999996542 11 123578888888888
Q ss_pred cCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031827 86 HGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 86 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~ 145 (152)
.|+.+++.-...++.+..+..+..+.+.|. .... ...++.+.++++++.+++.+.+
T Consensus 116 ~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 116 QGAKPVGFSNPDDYDYEESKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp TTCEEECCBCGGGSCCSCCTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCcccccchhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHHh
Confidence 999999753333333222222222222332 1221 1123456778888888776543
No 49
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.23 E-value=5.2e-11 Score=86.50 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=83.2
Q ss_pred CCCHHHHhhCCEeEEeccccC-CCch--------HHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CC-CCcchHHHH
Q 031827 11 TITPNELAEADGILLGFPTRF-GMMA--------AQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GG-GQETTPLTA 79 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~--------~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~-~g-g~~~~~~~~ 79 (152)
+...+++.++|.||||+|||+ +.++ ..++.|++++.. ..++||++++|++++.. .+ ....+...+
T Consensus 39 ~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l 114 (182)
T 2wc1_A 39 RADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNALFFL 114 (182)
T ss_dssp GCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHHHHH
T ss_pred cCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHHHHH
Confidence 344678999999999999999 8888 789999999864 47899999999997642 12 224678888
Q ss_pred HHHHHHcCcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031827 80 ITQLVHHGMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 80 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~ 145 (152)
.+.|...|+.+++.-...++.+.....+..+.+.|. ..+ .. ..++...+++..+.+.+.+.+
T Consensus 115 ~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl-~~d--~~-~~~~~~~~~~~~w~~~l~~~l 176 (182)
T 2wc1_A 115 HEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGL-ALD--QD-NQAALTPERLKGWLSLIAADF 176 (182)
T ss_dssp HHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSE-EEC--TT-TCGGGHHHHHHHHHHHTHHHH
T ss_pred HHHHHHCCCEEEEeecCCCcCcccchhhhcCceeee-ecc--CC-CCccccHHHHHHHHHHHHHHH
Confidence 888888999999753233332221111211112222 111 11 122346788888888876654
No 50
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.20 E-value=1.3e-11 Score=92.93 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=63.0
Q ss_pred CCCCCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCc-c-------------------ccCCCCCCeEEEEEecC
Q 031827 7 SDVPTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGL-W-------------------RSQQLAGKPAGIFYSTG 66 (152)
Q Consensus 7 ~d~~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~-~-------------------~~~~l~gK~~~~~~s~g 66 (152)
+|+.+. .+++.+||+|||++|+||+++++.+|.||||+... | ..+.|+||++.+++|+|
T Consensus 72 ~Dv~~~-~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G 150 (218)
T 3rpe_A 72 YDIESE-IENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWN 150 (218)
T ss_dssp CCHHHH-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECS
T ss_pred cCHHHH-HHHHHhCCEEEEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCC
Confidence 344444 88999999999999999999999999999998432 1 12468999999999988
Q ss_pred CCC-----CCC---cchHHH----HHHHHHHcCcEEecC
Q 031827 67 SQG-----GGQ---ETTPLT----AITQLVHHGMIFVPI 93 (152)
Q Consensus 67 ~~~-----gg~---~~~~~~----~~~~l~~~g~~~v~~ 93 (152)
... ++. ...+.+ +...+...||+.++.
T Consensus 151 ~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f~G~~~l~~ 189 (218)
T 3rpe_A 151 APREAFTDPEQFFHGVGVDGVYLPFHKANQFLGMKPLPT 189 (218)
T ss_dssp SCTHHHHCTTSTTTTCHHHHHTHHHHHHHHHTTCEECCC
T ss_pred CChHhhcccccccccCCHHHHHHHHHHHHHhCCCEEece
Confidence 652 111 122332 455667789998853
No 51
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.18 E-value=8.1e-11 Score=84.33 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=55.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..++.++|.||||+|+|++++++.++.||+++ .++||++++|+++||. +...++.++.+.+. +..++
T Consensus 73 ~~~l~~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~--~~g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 73 LFHPEKYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGS--GIGNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp CSCGGGCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSC--CSHHHHHHHHHHCT--TSEEC
T ss_pred ccChhhCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCC--CccHHHHHHHHHcC--CCEee
Confidence 46799999999999999999999999999986 5799999999999874 22345777776654 56665
No 52
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.17 E-value=6.2e-11 Score=85.17 Aligned_cols=107 Identities=10% Similarity=-0.105 Sum_probs=78.5
Q ss_pred CCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 11 TITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
+....++.++|.||||+||| ++.++..++.|++.+.... ...++||++++|+++....++...+...+.+.|...|+.
T Consensus 48 ~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~-~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~ 126 (167)
T 1ykg_A 48 DYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGE 126 (167)
T ss_dssp GCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTT-CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCE
T ss_pred hCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhcc-ccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 33456788999999999999 7899999999999986421 136899999999975332233345678888888888998
Q ss_pred EecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031827 90 FVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~ 147 (152)
++..... .++++.+.++++++++.+.++.
T Consensus 127 ~v~~~~~-----------------------------~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 127 RLLDRVD-----------------------------ADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp ESSCCEE-----------------------------ECTTCHHHHHHHHHHHHHHHHT
T ss_pred Eeeccee-----------------------------cCCCcHHHHHHHHHHHHHHHHh
Confidence 8764211 1234577888888888876654
No 53
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=1.9e-10 Score=89.51 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=56.9
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCcc-----------------ccCCCCCCeEEEEEecCCCC-----CC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLW-----------------RSQQLAGKPAGIFYSTGSQG-----GG 71 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~-----------------~~~~l~gK~~~~~~s~g~~~-----gg 71 (152)
.+++.+||.|||.+|+||+++++.+|.||||+.... ..+.|+||.+.+++|+|+.. .+
T Consensus 107 ~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~~~~y~~~g 186 (280)
T 4gi5_A 107 QEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGWAEHYSPRG 186 (280)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSCGGGGSTTB
T ss_pred HHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCChHHccccc
Confidence 678999999999999999999999999999985321 12468899999999987642 12
Q ss_pred CcchHHHHHHHH-----HHcCcEEec
Q 031827 72 QETTPLTAITQL-----VHHGMIFVP 92 (152)
Q Consensus 72 ~~~~~~~~~~~l-----~~~g~~~v~ 92 (152)
....+.++...+ ...||++++
T Consensus 187 ~~~~~~~~l~~~~~~~~~~~Gm~~l~ 212 (280)
T 4gi5_A 187 INGPIDDILFPIQHGMLFYPGFEVLP 212 (280)
T ss_dssp TTCCHHHHTHHHHCCCCCTTTCEECC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCeECC
Confidence 222344443333 235777765
No 54
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.08 E-value=3.1e-10 Score=82.10 Aligned_cols=67 Identities=13% Similarity=0.329 Sum_probs=54.5
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..++.++|.||||+|+|++++++.++.||+++ .++||++++|+++|++. ...++..+.+.+. +..+.
T Consensus 82 ~~~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 82 KENIGTYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp CTTGGGCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSEEC
T ss_pred cccHhHCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCeec
Confidence 46789999999999999999999999999997 57999999999998742 3346777776654 55543
No 55
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.02 E-value=9.3e-11 Score=82.98 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=51.9
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..++.+||+||||+|+|++++++.++.|++++. .+.+|++++|+++||..|+ +...+.+.+. +..++
T Consensus 71 ~~~l~~~d~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~g~---~~~~l~~~~~--~~~~~ 137 (151)
T 3edo_A 71 NIDYNNYDLILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNHKA---YVSHFNEWAD--GLNVI 137 (151)
T ss_dssp CCCGGGCSEEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCHHH---HHHHHHHHTT--TSEEE
T ss_pred hhCHhhCCEEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCCCc---HHHHHHHHcC--CCeee
Confidence 568999999999999999999999999999973 4678898888887763232 3555655543 55554
No 56
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=98.98 E-value=2e-11 Score=85.82 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=72.7
Q ss_pred HHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.+++.++|.|||++||| ++.+++.++.|++.+... ...++||++++|+++....+....+...+.+.|...|++++.
T Consensus 41 ~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~ 118 (147)
T 2hna_A 41 LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTG 118 (147)
T ss_dssp SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECS
T ss_pred HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEee
Confidence 34577899999999999 899999999999998531 126889999999943211111123455677777888999887
Q ss_pred CCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031827 93 IGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGIT 145 (152)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~ 145 (152)
..... +..+++++.+.+++++++++..+
T Consensus 119 ~~~~~-------------------------d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 119 ETLKI-------------------------NILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp SCBCC-------------------------CCSSCCSSCSCCHHHHHHHHHHH
T ss_pred eeEEE-------------------------ecCCCCCcHHHHHHHHHHHHHHh
Confidence 54332 12244556677778888776643
No 57
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=98.95 E-value=1.1e-09 Score=78.02 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCCHHHHhhCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCC-CCC-CcchHHHHHHHHHHcC
Q 031827 11 TITPNELAEADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQ-GGG-QETTPLTAITQLVHHG 87 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~-~gg-~~~~~~~~~~~l~~~g 87 (152)
+....++.++|.||||+|||+ +.++..++.|++.+.. ..++||++++|+++... .++ ...+...+.+.|..
T Consensus 36 ~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~----~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~-- 109 (164)
T 2bmv_A 36 KASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA-- 109 (164)
T ss_dssp GCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCT----HHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--
T ss_pred cCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhh----hhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--
Confidence 344678999999999999997 6677789999998853 35789999999984321 221 23456777777654
Q ss_pred cEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 88 MIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
+.+++.....++.+.....+..+...+. ... . ..+++++.++++++++++.+
T Consensus 110 ~~~~~~~~~~g~~~~~s~~~~~~~~~~l-~~~--~-~~~~~~~~~~~~~w~~~l~~ 161 (164)
T 2bmv_A 110 GKVVGQTSTDGYHFEASKAVEGGKFVGL-VID--E-DNQDDLTDERISKWVEQVKG 161 (164)
T ss_dssp SEECCCEESTTCCCSCCTTEETTEESSE-EEC--T-TTCGGGHHHHHHHHHHHHTT
T ss_pred CEEEccccCCCccccchhhhhcCcccCc-cCC--C-CCccccCHHHHHHHHHHHHH
Confidence 7777641111221111111111111111 111 1 22345679999999988764
No 58
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=98.88 E-value=1.1e-09 Score=80.73 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=73.4
Q ss_pred HHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCC-CCcchHHHHHHHHHHcCcEEecCC
Q 031827 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGG-GQETTPLTAITQLVHHGMIFVPIG 94 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~g-g~~~~~~~~~~~l~~~g~~~v~~~ 94 (152)
++.++|.|||++|||+|.++..++.|++.+.... ...|+||++++|+++....+ ....+...+.+.|...|+.++...
T Consensus 64 ~l~~~d~vi~g~~Ty~G~~p~~~~~fl~~L~~~~-~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~ 142 (191)
T 1bvy_F 64 NLPREGAVLIVTASYNGHPPDNAKQFVDWLDQAS-ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADR 142 (191)
T ss_dssp CCCSSSEEEEEECCBTTBCCTTTHHHHHHHHTCC-SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEE
T ss_pred hhhhCCeEEEEEeecCCCcCHHHHHHHHHHHhcc-chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeecc
Confidence 5778999999999999999999999999986431 13589999999996522111 122457788888888898877543
Q ss_pred CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHH-HHHHHHHHHHHHH
Q 031827 95 YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQ-AFHQGKYFAGITK 146 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~-~~~lG~~la~~~~ 146 (152)
..+ | . +++++. ++++++.|.+.++
T Consensus 143 ~~~-----------------------d--~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 143 GEA-----------------------D--A---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp EEE-----------------------E--T---TSCHHHHHHHHHHHHHHHHH
T ss_pred EEE-----------------------e--c---CCChHHHHHHHHHHHHHHhc
Confidence 211 1 1 235555 8888888887765
No 59
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=98.59 E-value=1.2e-07 Score=64.18 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=56.6
Q ss_pred hCCEeEEeccccC-CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCC-CcchHHHHHHHHHHcCcEEecCCCc
Q 031827 19 EADGILLGFPTRF-GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGG-QETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 19 ~aD~iIlgsP~y~-g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg-~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
.+|.|||++|||+ +.++..++.|++. +++|.+++|++++...+. ...+.+.+.+.+. ... .+.
T Consensus 32 ~~~~ii~g~pt~~~g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~~~---~~~ 96 (119)
T 2xod_A 32 IDEDFILITYTTGFGNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---VPI---VSK 96 (119)
T ss_dssp CCSCEEEEECCBTTTBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---CCE---EEE
T ss_pred cCCCEEEEEeecCCCcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---Ccc---EEE
Confidence 5999999999995 8999999999976 367899999885321121 1223444444432 110 111
Q ss_pred CCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHH
Q 031827 97 FGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFA 142 (152)
Q Consensus 97 ~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la 142 (152)
+. ..|++++++++++++++++
T Consensus 97 ---------------------~~----~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 97 ---------------------FE----LSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp ---------------------EE----TTCCHHHHHHHHHHHHHHT
T ss_pred ---------------------Ee----cCCCHHHHHHHHHHHHHhc
Confidence 11 4588999999999998875
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=98.35 E-value=1.5e-06 Score=74.84 Aligned_cols=112 Identities=13% Similarity=-0.060 Sum_probs=81.3
Q ss_pred CCCCCHHHHhhC-CEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc
Q 031827 9 VPTITPNELAEA-DGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH 86 (152)
Q Consensus 9 ~~~~~~~~i~~a-D~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~ 86 (152)
+.+...+++.++ |.|||++||| +|.++..++.|++.+.... ...|+||.+++|+.+....+....+.+.+.+.|...
T Consensus 87 l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~l 165 (682)
T 2bpo_A 87 VENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAA 165 (682)
T ss_dssp TTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHT
T ss_pred hHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHC
Confidence 445556778899 9999999999 8999999999999987532 135899999999954322233345678888888999
Q ss_pred CcEEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031827 87 GMIFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAGITKK 147 (152)
Q Consensus 87 g~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~~~~~ 147 (152)
|++.+...... | ..+ ++..+.++.+++.+...+..
T Consensus 166 Ga~~l~~~~~~-----------------------D--~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 166 GAIRLGKLGEA-----------------------D--DGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp TCEECSCCEEE-----------------------E--TTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEeECcEEE-----------------------e--cCC-cccHHHHHHHHHHHHHHHHh
Confidence 99988653210 1 122 34567788888888766544
No 61
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=65.87 Aligned_cols=82 Identities=13% Similarity=-0.096 Sum_probs=62.7
Q ss_pred CCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCc
Q 031827 10 PTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGM 88 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~ 88 (152)
.+...+++.+++.+||++||| .|.++..++.|++.+... ...++|+.+++||.+.+..+.--.+...+.+.|...|.
T Consensus 77 ~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa 154 (219)
T 3hr4_A 77 DKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGA 154 (219)
T ss_dssp GGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTC
T ss_pred ccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCC
Confidence 344567788999999999999 788888899999988642 13579999999997543322233467778888888899
Q ss_pred EEecC
Q 031827 89 IFVPI 93 (152)
Q Consensus 89 ~~v~~ 93 (152)
..+..
T Consensus 155 ~~l~~ 159 (219)
T 3hr4_A 155 SQLTP 159 (219)
T ss_dssp EESSC
T ss_pred CEeeC
Confidence 98864
No 62
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=97.60 E-value=0.00021 Score=61.62 Aligned_cols=84 Identities=14% Similarity=-0.109 Sum_probs=61.2
Q ss_pred CCCCHHHHhhCCEeEEecccc-CCCchHHHHHHHHHhcCccc--------------------------------------
Q 031827 10 PTITPNELAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWR-------------------------------------- 50 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~-------------------------------------- 50 (152)
.+....++..++.|||++||| +|.++..++.|++.+.....
T Consensus 48 ~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~ 127 (688)
T 1tll_A 48 EEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNF 127 (688)
T ss_dssp TTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC-------------------
T ss_pred ccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccc
Confidence 344456778899999999999 99999999999998764310
Q ss_pred --cCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 51 --SQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 51 --~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
...|+|+.+++|+.+......--.....+.+.|...|.+.+..
T Consensus 128 ~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~rl~~ 172 (688)
T 1tll_A 128 ESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILK 172 (688)
T ss_dssp ---CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred cccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCceeec
Confidence 1358999999999652211222345677888888889988754
No 63
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=97.57 E-value=0.00012 Score=62.46 Aligned_cols=73 Identities=12% Similarity=0.003 Sum_probs=55.4
Q ss_pred hCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 19 EADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 19 ~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
+++.+||++||| +|.++..++.|++.+... ...|+||.+++||.+....+..-.+.+.+.+.|...|.+.+..
T Consensus 70 ~~~~vi~~~sT~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 70 DNALVVFCMATYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp TTCEEEEEEECBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred cCcEEEEEcCccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 489999999999 899999999999998642 1478999999999432222222345667777888889988753
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=97.10 E-value=0.0017 Score=45.00 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=54.8
Q ss_pred HhhCCEeEEecccc-CCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCC-cchHHHHHHHHHHcCcEEecCC
Q 031827 17 LAEADGILLGFPTR-FGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQ-ETTPLTAITQLVHHGMIFVPIG 94 (152)
Q Consensus 17 i~~aD~iIlgsP~y-~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~-~~~~~~~~~~l~~~g~~~v~~~ 94 (152)
+...|.+||++||| .|.+|..+..|++.- .++..++++++....|.. -.+...+. ...++.++. .
T Consensus 41 ~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~---~~~~~~~~~-~ 107 (139)
T 1rlj_A 41 DHVDTPFVLVTYTTNFGQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAKSADTIS---RQYQVPILH-K 107 (139)
T ss_dssp SCCCSCEEEEECCBGGGBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHHH---HHHTCCEEE-E
T ss_pred cccCCCEEEEEcCcCCCcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHHHHHHHH---HHcCCCCcc-e
Confidence 45668899999999 799999999999642 235777777653211221 11222232 233544332 1
Q ss_pred CcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 95 YTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
+. ..+++++.++++++.+++..
T Consensus 108 ~e---------------------------l~g~~~D~~~~~~~~~~~~~ 129 (139)
T 1rlj_A 108 FE---------------------------LSGTSKDVELFTQEVERVVT 129 (139)
T ss_dssp EE---------------------------TTCCHHHHHHHHHHHHHHHH
T ss_pred EE---------------------------EcCCHHHHHHHHHHHHHHHH
Confidence 11 23678999999999888764
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=96.74 E-value=0.0011 Score=46.89 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHhhCCEeEEeccccC-----CCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCc--chHHHHHHHHHHcCc
Q 031827 16 ELAEADGILLGFPTRF-----GMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQE--TTPLTAITQLVHHGM 88 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~-----g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~--~~~~~~~~~l~~~g~ 88 (152)
.+...+-+|+++|||. |.++.++..||+.+. ..++..++++++ ...=+.. .+...+.+.+ +.
T Consensus 55 ~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsG-N~nfg~~Fc~A~d~ia~k~---~v 123 (153)
T 3n3a_C 55 RIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASG-NRNFGEAYGRAGDVIARKC---GV 123 (153)
T ss_dssp CCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEE-CGGGGGGTTHHHHHHHHHH---TC
T ss_pred ccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecC-CCchhHHHHHHHHHHHHHh---CC
Confidence 3456789999999997 999999999997642 235577788764 3321111 2344444333 32
Q ss_pred EEecCCCcCCCCCccccccccCCCCCCceecCCCCCCCCHHHHHHHHHHHHHHHH
Q 031827 89 IFVPIGYTFGAGMSEMEKVKGGSPYGAGTFAGDGSRQPSELELAQAFHQGKYFAG 143 (152)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~e~~~~~~~lG~~la~ 143 (152)
.++ +. +. ..++++|+++++++.+++..
T Consensus 124 P~l---~k---------------------fE----L~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 124 PWL---YR---------------------FE----LMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp CEE---EE---------------------EE----TTCCHHHHHHHHHHHHHHHH
T ss_pred CeE---EE---------------------Ee----CCCCHHHHHHHHHHHHHHHh
Confidence 111 11 11 45889999999999887654
No 66
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=55.47 E-value=5.9 Score=28.43 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=28.9
Q ss_pred HHHHh--hCCEeEE-eccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 14 PNELA--EADGILL-GFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 14 ~~~i~--~aD~iIl-gsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
++++. ++|+||+ |.+.+.....+.+..|+.+... ++|+++.+++
T Consensus 67 ~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~ 113 (212)
T 3efe_A 67 LDECTLESKDLLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICG 113 (212)
T ss_dssp GGGCCCCTTCEEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETH
T ss_pred HHHCCccCCCEEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcH
Confidence 45555 8999998 3344444556778888877643 5677766654
No 67
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=54.23 E-value=37 Score=25.74 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=40.5
Q ss_pred HHHHhh----CCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcE
Q 031827 14 PNELAE----ADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMI 89 (152)
Q Consensus 14 ~~~i~~----aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~ 89 (152)
++++.+ .|.+|+.+|. ......++.+.. .|.+..++.+.|-. +....++.+.....|+.
T Consensus 62 l~el~~~~~~~DvaIi~vp~------~~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 62 VKEALAEHPEINTSIVFVPA------PFAPDAVYEAVD-------AGIRLVVVITEGIP----VHDTMRFVNYARQKGAT 124 (297)
T ss_dssp HHHHHHHCTTCCEEEECCCG------GGHHHHHHHHHH-------TTCSEEEECCCCCC----HHHHHHHHHHHHHHTCE
T ss_pred HHHHhhcCCCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCE
Confidence 556654 8999999987 333444455432 45665566565432 22255677777788999
Q ss_pred EecCC
Q 031827 90 FVPIG 94 (152)
Q Consensus 90 ~v~~~ 94 (152)
++++.
T Consensus 125 viGPN 129 (297)
T 2yv2_A 125 IIGPN 129 (297)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99764
No 68
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=52.84 E-value=50 Score=24.96 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=41.7
Q ss_pred HHHHh---hCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~---~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++. ..|.+|+.+|. ......++.+.. .|.+..++.+.|-. +....++.+.....|+.+
T Consensus 62 l~el~~~~~~Dv~ii~vp~------~~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~v 124 (294)
T 2yv1_A 62 VKEAVKETDANASVIFVPA------PFAKDAVFEAID-------AGIELIVVITEHIP----VHDTMEFVNYAEDVGVKI 124 (294)
T ss_dssp HHHHHHHHCCCEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEccCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 45554 59999999987 455555556542 46676666565432 223556777777889999
Q ss_pred ecCC
Q 031827 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
+++.
T Consensus 125 iGPN 128 (294)
T 2yv1_A 125 IGPN 128 (294)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9764
No 69
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=52.54 E-value=10 Score=24.65 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=18.5
Q ss_pred CCCCHHHHhhCCEeEEeccccC
Q 031827 10 PTITPNELAEADGILLGFPTRF 31 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~ 31 (152)
+.++.+++.+||+||+++.+-.
T Consensus 48 n~Lt~~~I~~AD~VIia~d~~v 69 (106)
T 2m1z_A 48 NELTEKDVNIGEVVIFAVDTKV 69 (106)
T ss_dssp SCCCHHHHHHCSEEEEEESSCC
T ss_pred CCCCHHHHhhCCEEEEeccccc
Confidence 4567899999999999998744
No 70
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=51.29 E-value=44 Score=25.13 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=39.8
Q ss_pred HHHHh---hCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~---~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++. ..|.+|+.+|.- .....++.+.. .|+++.++.+.|-. +.....+.+.....|+.+
T Consensus 56 l~el~~~~~~D~viI~tP~~------~~~~~~~ea~~-------~Gi~~iVi~t~G~~----~~~~~~l~~~A~~~gv~l 118 (288)
T 2nu8_A 56 VREAVAATGATASVIYVPAP------FCKDSILEAID-------AGIKLIITITEGIP----TLDMLTVKVKLDEAGVRM 118 (288)
T ss_dssp HHHHHHHHCCCEEEECCCGG------GHHHHHHHHHH-------TTCSEEEECCCCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEecCHH------HHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 45555 599999999983 22333334322 46666565554321 222456777778889999
Q ss_pred ecCCC
Q 031827 91 VPIGY 95 (152)
Q Consensus 91 v~~~~ 95 (152)
+++.+
T Consensus 119 iGPNc 123 (288)
T 2nu8_A 119 IGPNT 123 (288)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 97653
No 71
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=45.91 E-value=15 Score=24.09 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=27.8
Q ss_pred CCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.+++.+||+|||++-+---+ ..+|.||++.-..+
T Consensus 51 n~Lt~~~I~~Ad~VIiA~d~~v~~-----------------~~RF~GK~v~~~~v 88 (111)
T 2kyr_A 51 NRLTAQDIAEATIIIHSVAVTPED-----------------NERFESRDVYEITL 88 (111)
T ss_dssp SCCCHHHHHHCSEEEEEESSCCTT-----------------GGGGTTSCEEEEET
T ss_pred CCCCHHHHHhCCEEEEEeCCCcCc-----------------hhhcCCCeEEEeCH
Confidence 356789999999999998864111 13678999877655
No 72
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=44.63 E-value=11 Score=27.27 Aligned_cols=38 Identities=13% Similarity=-0.076 Sum_probs=26.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~ 63 (152)
...+.++|.|||.||. .++.|++.+.. .+.+++++++|
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l~~-----~l~~~~~~aVG 82 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWLKD-----QWPKATYYAVG 82 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHHTT-----CCCSSEEEESS
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHHHh-----hCcCCeEEEEC
Confidence 4567889999999996 55778877642 34455554443
No 73
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=43.97 E-value=17 Score=23.62 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.+++.+||.|||++-+-- | ..+|.||++.-...
T Consensus 48 n~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v 84 (106)
T 2r48_A 48 NKLTEEEIREADAIIIAADRSV-----------N-------KDRFIGKKLLSVGV 84 (106)
T ss_dssp SCCCHHHHHHCSEEEEEESSCC-----------C-------CGGGTTSBEEEECH
T ss_pred CCCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCH
Confidence 3567889999999999987631 1 13678998876654
No 74
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=42.09 E-value=84 Score=23.60 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHHh---hCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELA---EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~---~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
++++. ..|.+|+.+|. ......++.+.. .|.+..++.+.|-. +.....+.+.....|+.+
T Consensus 56 l~el~~~~~~Dv~Ii~vp~------~~~~~~~~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~a~~~gi~v 118 (288)
T 1oi7_A 56 VKEAVAHHEVDASIIFVPA------PAAADAALEAAH-------AGIPLIVLITEGIP----TLDMVRAVEEIKALGSRL 118 (288)
T ss_dssp HHHHHHHSCCSEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEE
T ss_pred HHHHhhcCCCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEE
Confidence 45555 59999999886 455666666543 45565565555432 222456777777889999
Q ss_pred ecCC
Q 031827 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
+++.
T Consensus 119 igPN 122 (288)
T 1oi7_A 119 IGGN 122 (288)
T ss_dssp EESS
T ss_pred EeCC
Confidence 9754
No 75
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.34 E-value=16 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
+.++.+++.+||.|||++-+-- | ..+|.||++.-...
T Consensus 48 n~Lt~~~I~~Ad~VIiA~d~~v-----------~-------~~RF~GK~v~~~~v 84 (106)
T 2r4q_A 48 HKLTAQEIEDAPAIIVAADKQV-----------E-------MERFKGKRVLQVPV 84 (106)
T ss_dssp SCCCHHHHHHCSCEEEEESSCC-----------C-------CGGGTTSBEEEECH
T ss_pred CCCCHHHHHhCCEEEEEeCCcc-----------C-------HhHcCCCeEEEeCH
Confidence 3567889999999999987631 1 13678998876654
No 76
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=39.87 E-value=87 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=21.6
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
+.+.+||.||++.|.+ .++.+++.+.+
T Consensus 95 ea~~~aDvVilaVp~~------~~~~vl~~i~~ 121 (356)
T 3k96_A 95 ASLEGVTDILIVVPSF------AFHEVITRMKP 121 (356)
T ss_dssp HHHTTCCEEEECCCHH------HHHHHHHHHGG
T ss_pred HHHhcCCEEEECCCHH------HHHHHHHHHHH
Confidence 4577899999999984 67788888754
No 77
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=36.43 E-value=20 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=10.7
Q ss_pred ccCCCchHHHHHHHHHhcC
Q 031827 29 TRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 29 ~y~g~~~~~~k~flD~l~~ 47 (152)
.||++|+..+|.||+.+..
T Consensus 15 ~~~~~m~~~Lq~~L~~ll~ 33 (143)
T 3cpt_A 15 LYFQGSADDLKRFLYKKLP 33 (143)
T ss_dssp -------CHHHHHHHHHGG
T ss_pred hhhhhhHHHHHHHHHHHHh
Confidence 5899999999999999864
No 78
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=36.19 E-value=1.3e+02 Score=22.23 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPI 93 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~ 93 (152)
.+++.++|.||++.|+. ..++..++.+... .-+++.+ ...+. ........+...+...|..+++.
T Consensus 65 ~~~~~~aDvvi~~vp~~-----~~~~~v~~~l~~~----l~~g~iv---v~~st---~~~~~~~~~~~~~~~~g~~~~~~ 129 (296)
T 3qha_A 65 VADVAAADLIHITVLDD-----AQVREVVGELAGH----AKPGTVI---AIHST---ISDTTAVELARDLKARDIHIVDA 129 (296)
T ss_dssp HHHHTTSSEEEECCSSH-----HHHHHHHHHHHTT----CCTTCEE---EECSC---CCHHHHHHHHHHHGGGTCEEEEC
T ss_pred HHHHHhCCEEEEECCCh-----HHHHHHHHHHHHh----cCCCCEE---EEeCC---CCHHHHHHHHHHHHHcCCEEEeC
Confidence 45555599999999962 4567777666431 1234433 22211 11234556666777778888865
Q ss_pred CC
Q 031827 94 GY 95 (152)
Q Consensus 94 ~~ 95 (152)
+.
T Consensus 130 pv 131 (296)
T 3qha_A 130 PV 131 (296)
T ss_dssp CE
T ss_pred CC
Confidence 43
No 79
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=34.59 E-value=17 Score=25.97 Aligned_cols=38 Identities=5% Similarity=-0.020 Sum_probs=25.4
Q ss_pred hCCEeEEe-ccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 19 EADGILLG-FPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 19 ~aD~iIlg-sP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
++|+||+. .+.... ..+.+..|+.+... ++|+++.+++
T Consensus 63 ~~D~livpGG~~~~~-~~~~l~~~l~~~~~-------~gk~iaaiC~ 101 (206)
T 3f5d_A 63 NFNLLVMIGGDSWSN-DNKKLLHFVKTAFQ-------KNIPIAAICG 101 (206)
T ss_dssp CCSEEEECCBSCCCC-CCHHHHHHHHHHHH-------TTCCEEEETH
T ss_pred CCCEEEEcCCCChhh-cCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 68999883 333333 67788888887643 6777777654
No 80
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=34.31 E-value=21 Score=26.33 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=19.3
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
.++.++|.|||.||. .++.|++.+..
T Consensus 62 ~~l~~~d~vifTS~n-------aV~~~~~~l~~ 87 (269)
T 3re1_A 62 FELLNYSAVIVVSKP-------AARLAIELIDE 87 (269)
T ss_dssp HTGGGSSEEEECSHH-------HHHHHHHHHHH
T ss_pred HhccCCCEEEEECHH-------HHHHHHHHHHH
Confidence 456789999999987 45667766643
No 81
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=34.24 E-value=22 Score=25.84 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=25.6
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~ 63 (152)
+.++.++|.|||.||. .++.|++++...|. .+.+.+++++|
T Consensus 53 l~~l~~~d~vifTS~~-------aV~~~~~~l~~~~~--~~~~~~i~aVG 93 (254)
T 4es6_A 53 MLDLDRYCAVVVVSKP-------AARLGLERLDRYWP--QPPQQTWCSVG 93 (254)
T ss_dssp HHTGGGCSEEEECSHH-------HHHHHHHHHHHHCS--SCCSCEEEESS
T ss_pred HHhccCCCEEEEECHH-------HHHHHHHHHHHhCC--CcccCEEEEEC
Confidence 3556789999999986 55777776643321 23344554444
No 82
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Probab=33.80 E-value=1.3e+02 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031827 55 AGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 55 ~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
..+++.+|..+|++..+.......+...|...|+.++...+.
T Consensus 80 ~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 121 (303)
T 4e15_A 80 NQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYN 121 (303)
T ss_dssp TTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCC
T ss_pred CCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCC
Confidence 356777777665433333332334556667789998876654
No 83
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=33.09 E-value=16 Score=26.06 Aligned_cols=45 Identities=4% Similarity=-0.065 Sum_probs=26.6
Q ss_pred CHHHHhhCCEeEEeccccCC----CchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 13 TPNELAEADGILLGFPTRFG----MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g----~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++++.++|.||+..-.-.. .-.+.+..|+.+... +||+++.+++
T Consensus 68 ~~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~-------~g~~iaaIC~ 116 (209)
T 3er6_A 68 QWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHL-------KGSKIVAIDT 116 (209)
T ss_dssp CGGGCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred CccccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHh-------cCCEEEEEcH
Confidence 35666789999984321111 125667777776642 5667666654
No 84
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=32.29 E-value=2e+02 Score=23.13 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 54 LAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 54 l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
++|+.+++++.+.-..|...++...+...+..+|+.+.
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 78889888864322224434567778778777888765
No 85
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=31.80 E-value=1.8e+02 Score=22.62 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHHHhhCCEeEEeccccCCCc-hHHHHHHHHHhc
Q 031827 14 PNELAEADGILLGFPTRFGMM-AAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~-~~~~k~flD~l~ 46 (152)
.+.++++|.+|+=+|- |.+ ..-+|.|++.+.
T Consensus 136 ~EAvk~AEi~IlftPf--G~~t~~Iakkii~~lp 167 (358)
T 2b0j_A 136 REAVEGADIVITWLPK--GNKQPDIIKKFADAIP 167 (358)
T ss_dssp HHHHTTCSEEEECCTT--CTTHHHHHHHHGGGSC
T ss_pred HHHhcCCCEEEEecCC--CCCcHHHHHHHHhhCc
Confidence 6788999999999985 664 566788888874
No 86
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=31.55 E-value=1.2e+02 Score=23.46 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=36.9
Q ss_pred CCEeEE---------------eccccCCCc--hHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHH
Q 031827 20 ADGILL---------------GFPTRFGMM--AAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQ 82 (152)
Q Consensus 20 aD~iIl---------------gsP~y~g~~--~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~ 82 (152)
+|+|++ ..|++|+.- .-+...++|-+.-....+.++|+.++++|-. ..+...+...
T Consensus 102 ~D~iviR~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~-------~~va~Sl~~~ 174 (321)
T 1oth_A 102 ADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDG-------NNILHSIMMS 174 (321)
T ss_dssp CSEEEEECSCHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCS-------SHHHHHHHTT
T ss_pred CCEEEEeCCChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCc-------hhhHHHHHHH
Confidence 788887 467777542 2234555555431111257889888876541 1355666655
Q ss_pred HHHcCcEEe
Q 031827 83 LVHHGMIFV 91 (152)
Q Consensus 83 l~~~g~~~v 91 (152)
+..+|+.+.
T Consensus 175 ~~~~G~~v~ 183 (321)
T 1oth_A 175 AAKFGMHLQ 183 (321)
T ss_dssp TGGGTCEEE
T ss_pred HHHcCCeEE
Confidence 556666653
No 87
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=30.46 E-value=19 Score=28.49 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..|||||++|||
T Consensus 245 ~~aDGlIVSTPT 256 (365)
T 3pfn_A 245 VQGDGVIVSTPT 256 (365)
T ss_dssp ECSSEEEEECGG
T ss_pred EecCeEEEeCCc
Confidence 469999999999
No 88
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=30.42 E-value=29 Score=24.19 Aligned_cols=41 Identities=10% Similarity=-0.206 Sum_probs=23.9
Q ss_pred HhhCCEeEEec--cccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 17 LAEADGILLGF--PTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 17 i~~aD~iIlgs--P~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++|+||+-- ......-.+.+..|+.+... +||+++.+++
T Consensus 67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~-------~~k~iaaIC~ 109 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLD-------NQKIVAGIGS 109 (177)
T ss_dssp GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHH-------hCCEEEEecc
Confidence 35789999831 11222235677777777642 5666666643
No 89
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=29.74 E-value=37 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031827 131 LAQAFHQGKYFAGITKKL 148 (152)
Q Consensus 131 ~~~~~~lG~~la~~~~~~ 148 (152)
...+.++|+||+++|+-.
T Consensus 118 EADaqEFGERiaeLAkiR 135 (162)
T 1f35_A 118 EADALEFGERLSDLAKIR 135 (162)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 456889999999999864
No 90
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=29.56 E-value=36 Score=24.43 Aligned_cols=36 Identities=17% Similarity=0.030 Sum_probs=28.7
Q ss_pred CCHHHHhhCCEeE---EeccccC-CCchHHHHHHHHHhcC
Q 031827 12 ITPNELAEADGIL---LGFPTRF-GMMAAQFKAFLDATGG 47 (152)
Q Consensus 12 ~~~~~i~~aD~iI---lgsP~y~-g~~~~~~k~flD~l~~ 47 (152)
++-+++..||.++ -+.|.|+ .++...+.-.+||+..
T Consensus 146 Ltneel~~cd~~l~~Ip~~~eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 146 LPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp CCHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHTT
T ss_pred CCHHHHHhcCEEEccCCCCCCCCccCHHHHHHHHHHHHcC
Confidence 4578889999887 5777885 7888888999999854
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=28.77 E-value=1.3e+02 Score=20.12 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=34.2
Q ss_pred CCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 11 TITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 11 ~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.....-+..+|++|+....-...-...+..++.++... ....++++.++++=
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK 139 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE---DELRDAVLLVFANK 139 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEEC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcc---cccCCCeEEEEEEC
Confidence 33345678999999987765554456666777766431 23467888888773
No 92
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=26.94 E-value=29 Score=24.51 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=23.0
Q ss_pred HhhCCEeEE-eccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 17 LAEADGILL-GFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 17 i~~aD~iIl-gsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++|.||+ |.+...... +.+..|+.+... +||+++.+++
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~-------~g~~iaaIC~ 109 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAA-------HGMALGGLWN 109 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHH-------HTCEEEEETT
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHh-------hCCEEEEECH
Confidence 567999998 333222223 667777776542 4555555543
No 93
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=26.58 E-value=1e+02 Score=20.25 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=33.8
Q ss_pred hCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031827 19 EADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
..|.+|+..|. ......++.+.. .|....++ ..+. . .+++.+.....|+.++++.+
T Consensus 69 ~vDlvii~vp~------~~v~~v~~~~~~-------~g~~~i~~-~~~~---~----~~~l~~~a~~~Gi~~igpnc 124 (138)
T 1y81_A 69 DVDVIVFVVPP------KVGLQVAKEAVE-------AGFKKLWF-QPGA---E----SEEIRRFLEKAGVEYSFGRC 124 (138)
T ss_dssp TCCEEEECSCH------HHHHHHHHHHHH-------TTCCEEEE-CTTS---C----CHHHHHHHHHHTCEEECSCC
T ss_pred CCCEEEEEeCH------HHHHHHHHHHHH-------cCCCEEEE-cCcc---H----HHHHHHHHHHCCCEEEcCCc
Confidence 58999999995 455555555532 23333333 3222 1 24566667788999998653
No 94
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=26.27 E-value=60 Score=24.96 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=37.7
Q ss_pred eccccCCC---chHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 26 GFPTRFGM---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 26 gsP~y~g~---~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
..|++|+. -.-+...+.|-+.-....+.++|+.++.+|-. -..++...+...+..+|+++.
T Consensus 122 ~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~-----~~~rva~Sl~~~~~~~G~~v~ 185 (308)
T 1ml4_A 122 EVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDL-----KYGRTVHSLAEALTFYDVELY 185 (308)
T ss_dssp SSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCT-----TTCHHHHHHHHHGGGSCEEEE
T ss_pred CCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCC-----CcCchHHHHHHHHHHCCCEEE
Confidence 47888842 34555666666532212357889888877542 112467777777777888764
No 95
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=25.92 E-value=1.8e+02 Score=20.68 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCcccc--CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCCc
Q 031827 36 AQFKAFLDATGGLWRS--QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYT 96 (152)
Q Consensus 36 ~~~k~flD~l~~~~~~--~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~~ 96 (152)
..|+..++.+.+.... ..-..++-.++++-++ ...+...+-+...|...|++++..|..
T Consensus 69 ~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~g--d~HdiG~~iv~~~l~~~G~~Vi~LG~~ 129 (215)
T 3ezx_A 69 KAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEG--DIHDIGHRLVTTMLGANGFQIVDLGVD 129 (215)
T ss_dssp HHHHHHHHHHHHHHTSSCCC---CCEEEEEECTT--CCCCHHHHHHHHHHHHTSCEEEECCSS
T ss_pred HHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCC--ChhHHHHHHHHHHHHHCCCeEEEcCCC
Confidence 4556666665433221 1223334444555332 233444555666777899999987754
No 96
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=25.07 E-value=22 Score=27.03 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=10.6
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 171 ~~~DGlIVsTPT 182 (278)
T 1z0s_A 171 IRCDGFIVATQI 182 (278)
T ss_dssp EEESEEEEEESG
T ss_pred EecCeEEEecCC
Confidence 469999999997
No 97
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=25.06 E-value=1.3e+02 Score=23.81 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=44.6
Q ss_pred CCHHHHhhCCEeEEeccccCCCchHHHH-HHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 12 ITPNELAEADGILLGFPTRFGMMAAQFK-AFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 12 ~~~~~i~~aD~iIlgsP~y~g~~~~~~k-~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
+..+.+.+....|.-+|-|+...-++.- ..+=.+.+ .....+.||.++++|.+ . .-..+...+...||.+
T Consensus 75 iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r-~~g~~l~gktvGIIGlG-~-------IG~~vA~~l~a~G~~V 145 (381)
T 3oet_A 75 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE-RDGFSLRDRTIGIVGVG-N-------VGSRLQTRLEALGIRT 145 (381)
T ss_dssp BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHH-HTTCCGGGCEEEEECCS-H-------HHHHHHHHHHHTTCEE
T ss_pred cCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHH-hcCCccCCCEEEEEeEC-H-------HHHHHHHHHHHCCCEE
Confidence 4467778888889999998765444321 11111111 01247899999999863 2 1233556667789998
Q ss_pred ecC
Q 031827 91 VPI 93 (152)
Q Consensus 91 v~~ 93 (152)
+..
T Consensus 146 ~~~ 148 (381)
T 3oet_A 146 LLC 148 (381)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 98
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=24.98 E-value=1.2e+02 Score=23.93 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=32.8
Q ss_pred ccccCCC--chHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 27 FPTRFGM--MAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 27 sP~y~g~--~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.|++|+. -.-+...+.|-+.-....+.++|+.++++|-.. ..+...+...+..+|+.+.
T Consensus 149 vPVINa~~~~~HPtQaLaDl~Ti~E~~G~l~glkva~vGD~~------nnva~Sl~~~~~~lG~~v~ 209 (365)
T 4amu_A 149 VPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDYK------NNVGVSTMIGAAFNGMHVV 209 (365)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHHHSSCTTCEEEEESSTT------SHHHHHHHHHHHHTTCEEE
T ss_pred CCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCC------cchHHHHHHHHHHcCCEEE
Confidence 4677642 122334444443211112468999998776421 1356777777777888764
No 99
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=24.51 E-value=30 Score=25.47 Aligned_cols=40 Identities=5% Similarity=-0.125 Sum_probs=24.3
Q ss_pred hhCCEeEEec--c-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 18 AEADGILLGF--P-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgs--P-~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++|+|++-- + .+.....+.+..|+.++.. .||+++.+++
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~-------~gk~iaaIC~ 139 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYA-------NGGVIAAICH 139 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 4689999843 2 2333456777788877642 4555555543
No 100
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=23.66 E-value=1.2e+02 Score=20.46 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCCHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 10 PTITPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
......-+..+|++|+..-.-...-...++.|++.+... ...+++..++++
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~n 146 (199)
T 3l0i_B 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGN 146 (199)
T ss_dssp CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-C
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEE
Confidence 334355678899999987766655556777787777532 224667766665
No 101
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=23.43 E-value=2.2e+02 Score=20.71 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=36.9
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHH---HHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFL---DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~fl---D~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
+.+.++|.||+..|. +..++..+ +.+.. ...+|+.+ ...+. ........+...+...|..++
T Consensus 53 ~~~~~advvi~~v~~-----~~~~~~v~~~~~~l~~----~l~~g~~v---v~~st---~~~~~~~~~~~~~~~~g~~~~ 117 (287)
T 3pdu_A 53 EVCAACDITIAMLAD-----PAAAREVCFGANGVLE----GIGGGRGY---IDMST---VDDETSTAIGAAVTARGGRFL 117 (287)
T ss_dssp HHHHHCSEEEECCSS-----HHHHHHHHHSTTCGGG----TCCTTCEE---EECSC---CCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHcCCEEEEEcCC-----HHHHHHHHcCchhhhh----cccCCCEE---EECCC---CCHHHHHHHHHHHHHcCCEEE
Confidence 445789999999997 24566666 44332 11244433 22211 112345556666677788887
Q ss_pred cCC
Q 031827 92 PIG 94 (152)
Q Consensus 92 ~~~ 94 (152)
+.+
T Consensus 118 ~~p 120 (287)
T 3pdu_A 118 EAP 120 (287)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 102
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.31 E-value=1.7e+02 Score=23.63 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEecCCC
Q 031827 52 QQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGY 95 (152)
Q Consensus 52 ~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~~~~ 95 (152)
..|.||.+++++- . . . .-.+..+|..+||+++..+.
T Consensus 328 ~~l~GKrv~i~~~--~---~--~-~~~l~~~L~ElGmevv~~gt 363 (483)
T 3pdi_A 328 ARLEGKRVLLYTG--G---V--K-SWSVVSALQDLGMKVVATGT 363 (483)
T ss_dssp HHHTTCEEEEECS--S---S--C-HHHHHHHHHHHTCEEEEECB
T ss_pred HHhcCCEEEEECC--C---c--h-HHHHHHHHHHCCCEEEEEec
Confidence 3689999988752 1 1 1 33466677889999987543
No 103
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=23.17 E-value=2.2e+02 Score=20.75 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=36.9
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHH---HhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLD---ATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD---~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
+.+.++|.||++.|. +..++..+. .+.. ...+++.+ .+.+. ........+...+...|..++
T Consensus 55 ~~~~~aDvvi~~vp~-----~~~~~~v~~~~~~~~~----~l~~~~~v---i~~st---~~~~~~~~l~~~~~~~g~~~~ 119 (302)
T 2h78_A 55 DAVQGADVVISMLPA-----SQHVEGLYLDDDGLLA----HIAPGTLV---LECST---IAPTSARKIHAAARERGLAML 119 (302)
T ss_dssp HHHTTCSEEEECCSC-----HHHHHHHHHSSSCGGG----SSCSSCEE---EECSC---CCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhCCCeEEEECCC-----HHHHHHHHcCchhHHh----cCCCCcEE---EECCC---CCHHHHHHHHHHHHHcCCEEE
Confidence 446789999999986 346777776 4432 11234433 22211 112234556666666788777
Q ss_pred cCC
Q 031827 92 PIG 94 (152)
Q Consensus 92 ~~~ 94 (152)
+.+
T Consensus 120 ~~p 122 (302)
T 2h78_A 120 DAP 122 (302)
T ss_dssp ECC
T ss_pred EEE
Confidence 643
No 104
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.32 E-value=66 Score=21.69 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=23.8
Q ss_pred hhCCEeEEecc----cc-CCC---chHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 18 AEADGILLGFP----TR-FGM---MAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgsP----~y-~g~---~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++|+||+-.- .. ... ..+.+..|+.+... ++|+++.+++
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~-------~gk~i~aiC~ 112 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGE-------KGKMMIGHCA 112 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHH-------CCCEEEEECH
Confidence 78999998543 11 112 35667777777642 5666666543
No 105
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=21.94 E-value=1.6e+02 Score=18.71 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=29.7
Q ss_pred HHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 16 ELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 16 ~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
-+..+|++|+....-...-...+..++..+.. .....+++..++++=
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 110 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANK 110 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCeEEEEEEC
Confidence 46789999997665444334555666666532 123467888888774
No 106
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=21.94 E-value=2.5e+02 Score=20.80 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=37.3
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHH---HHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEE
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFL---DATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIF 90 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~fl---D~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~ 90 (152)
.+.+.++|.||++.|. +..++..+ +.+.. ...+|+.+ ...+. ........+...+...|..+
T Consensus 72 ~~~~~~aDvvi~~vp~-----~~~~~~v~~~~~~l~~----~l~~g~~v---v~~st---~~~~~~~~~~~~~~~~g~~~ 136 (310)
T 3doj_A 72 AEVIKKCKYTIAMLSD-----PCAALSVVFDKGGVLE----QICEGKGY---IDMST---VDAETSLKINEAITGKGGRF 136 (310)
T ss_dssp HHHHHHCSEEEECCSS-----HHHHHHHHHSTTCGGG----GCCTTCEE---EECSC---CCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhCCEEEEEcCC-----HHHHHHHHhCchhhhh----ccCCCCEE---EECCC---CCHHHHHHHHHHHHHcCCEE
Confidence 3456789999999987 23566665 33322 12244433 22211 11234555666667778888
Q ss_pred ecCC
Q 031827 91 VPIG 94 (152)
Q Consensus 91 v~~~ 94 (152)
++.+
T Consensus 137 v~~p 140 (310)
T 3doj_A 137 VEGP 140 (310)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8654
No 107
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=21.82 E-value=3e+02 Score=21.83 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 53 QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 53 ~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.++|+.+++++.+-...|........+...+..+|+.+.
T Consensus 188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~ 226 (399)
T 3q98_A 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 226 (399)
T ss_dssp GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEE
T ss_pred ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEE
Confidence 368889888865422223334556777777777888764
No 108
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=21.70 E-value=1.9e+02 Score=19.51 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=39.9
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.-+..+|++|+....-...-...++.|++.+... ....++++.++++=-.-..................++.++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~---~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 4467899999987765544445556666665431 2236788877776321111111123444444455565544
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=21.61 E-value=1.8e+02 Score=19.11 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=32.0
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+....-...-...++.++.++.. .....++|..++++=
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 132 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD---EDELRKSLLLIFANK 132 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHT---CSTTTTCEEEEEEEC
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHh---hhhcCCCeEEEEEEC
Confidence 3456789999998776555444556666666532 123467888888774
No 110
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=21.51 E-value=63 Score=21.07 Aligned_cols=51 Identities=14% Similarity=-0.046 Sum_probs=29.7
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+..-.-...-...++.|++.+..........+++..++++=
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 345678999997655444444455666666542111123367788888774
No 111
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=21.50 E-value=1.7e+02 Score=18.67 Aligned_cols=48 Identities=13% Similarity=-0.033 Sum_probs=31.0
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+....-...-...+..++..+.. .....++++.++++=
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK 117 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE---EEELRKAILVVFANK 117 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhCCCEEEEEEEC
Confidence 445689999998776555444555666666532 123467888888774
No 112
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=21.49 E-value=15 Score=26.60 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEE
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFY 63 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~ 63 (152)
.++.++|.|||.||. -++.|++++........+.+++++++|
T Consensus 33 ~~l~~~d~lifTS~n-------aV~~~~~~l~~~~~~~~l~~~~i~aVG 74 (229)
T 3p9z_A 33 LDPTPFNALIFTSKN-------AVFSLLETLKNSPKLKMLQNIPAYALS 74 (229)
T ss_dssp SCCTTCSEEEESCHH-------HHHHHHHHTTTCHHHHHHHTSCEEESS
T ss_pred CCcCcCCEEEEECHH-------HHHHHHHHHHhccchHHHcCCcEEEEC
Confidence 355789999999987 446677766421100123455555444
No 113
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=21.37 E-value=1.5e+02 Score=22.23 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcC
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGG 47 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~ 47 (152)
.+++..+|.||+++|.+ . +...++.+.+
T Consensus 81 ~~~~~~~D~vilavk~~--~----~~~~l~~l~~ 108 (318)
T 3hwr_A 81 PSAVQGADLVLFCVKST--D----TQSAALAMKP 108 (318)
T ss_dssp GGGGTTCSEEEECCCGG--G----HHHHHHHHTT
T ss_pred HHHcCCCCEEEEEcccc--c----HHHHHHHHHH
Confidence 34567899999999997 2 4566666653
No 114
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=21.24 E-value=19 Score=26.19 Aligned_cols=33 Identities=18% Similarity=-0.011 Sum_probs=19.2
Q ss_pred HHHHhhCCEeEEec-ccc-CCCchHHHHHHHHHhc
Q 031827 14 PNELAEADGILLGF-PTR-FGMMAAQFKAFLDATG 46 (152)
Q Consensus 14 ~~~i~~aD~iIlgs-P~y-~g~~~~~~k~flD~l~ 46 (152)
++++.++|.||+.. +-. ...-.+.+..|+.+..
T Consensus 60 l~~~~~~D~livpGG~g~~~~~~~~~l~~~lr~~~ 94 (231)
T 3noq_A 60 FADCPPLDVICIPGGTGVGALMEDPQALAFIRQQA 94 (231)
T ss_dssp TTTCCCCSEEEECCSTTHHHHTTCHHHHHHHHHHH
T ss_pred hhHCCcCCEEEECCCCChhhhccCHHHHHHHHHHH
Confidence 34455799999853 211 1123466777777764
No 115
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=21.07 E-value=24 Score=24.58 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=26.0
Q ss_pred CCHHHH---hhCCEeEEeccc---cCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 12 ITPNEL---AEADGILLGFPT---RFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 12 ~~~~~i---~~aD~iIlgsP~---y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
..++++ .++|+||+..-. +...-.+.+..|+.+... ++|+++.+++
T Consensus 56 ~~l~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~-------~gk~i~aiC~ 107 (197)
T 2rk3_A 56 ASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEN-------RKGLIATICA 107 (197)
T ss_dssp EEHHHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred cCHHHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHH-------cCCEEEEECH
Confidence 346677 789999986421 111123455666665532 5677666654
No 116
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=21.07 E-value=1.7e+02 Score=19.72 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
..-+..+|++|+..-.....-...++.++..+... ....++|..++++=
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK 135 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNK 135 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEEC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEEEC
Confidence 34577899999987776655556667777766431 23467888888773
No 117
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=21.04 E-value=18 Score=25.61 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=26.6
Q ss_pred HHHH--hhCCEeEEec--c-ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 14 PNEL--AEADGILLGF--P-TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 14 ~~~i--~~aD~iIlgs--P-~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
++++ .++|+||+.. + .+...-.+.+..|+.+... +||+++.++++
T Consensus 64 l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aiC~G 113 (208)
T 3ot1_A 64 LEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQ-------QGKLVAAICAT 113 (208)
T ss_dssp GGGCCGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHH-------TTCEEEEETTH
T ss_pred HHHCCCcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHH-------cCCEEEEEChh
Confidence 4444 5799999832 1 2222234566777766642 67777777654
No 118
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=20.99 E-value=81 Score=22.23 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHh
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDAT 45 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l 45 (152)
.+.+.++|.||+++|. ..+..++..+
T Consensus 76 ~~~~~~aDvVilavp~------~~~~~v~~~l 101 (220)
T 4huj_A 76 LKDALQADVVILAVPY------DSIADIVTQV 101 (220)
T ss_dssp HHHHTTSSEEEEESCG------GGHHHHHTTC
T ss_pred HHHHhcCCEEEEeCCh------HHHHHHHHHh
Confidence 5668899999999994 4455565555
No 119
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=20.90 E-value=1.9e+02 Score=19.12 Aligned_cols=74 Identities=7% Similarity=-0.051 Sum_probs=40.7
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
.-+..+|++|+..-.-...-...++.|++.+.. ....+.+..++++=-.-..................++.++.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKT----YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFE 164 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 456789999997665444444556667666643 13357788777763221111112233444444556776553
No 120
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=20.83 E-value=1.8e+02 Score=19.27 Aligned_cols=48 Identities=15% Similarity=-0.007 Sum_probs=30.4
Q ss_pred HHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEec
Q 031827 15 NELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYST 65 (152)
Q Consensus 15 ~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~ 65 (152)
.-+..+|++|+....-...-...++.++..+.. .....++++.++++=
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK 133 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLD---KPQLQGIPVLVLGNK 133 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCCEEEEEEC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHh---CcccCCCCEEEEEEC
Confidence 346789999998776554444555666666532 112467788887763
No 121
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=20.74 E-value=57 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCCHHHHhhCCEeEEeccccCCCchHHH
Q 031827 10 PTITPNELAEADGILLGFPTRFGMMAAQF 38 (152)
Q Consensus 10 ~~~~~~~i~~aD~iIlgsP~y~g~~~~~~ 38 (152)
+++ .+.|.+||.||+|--.++-++-|.+
T Consensus 176 p~a-l~AI~~AD~IvlgPGSl~TSI~P~L 203 (326)
T 2q7x_A 176 RRV-VQTILESDMIVLGPGSLFTSILPNI 203 (326)
T ss_dssp SHH-HHHHHHCSEEEECSSCCCCCCHHHH
T ss_pred HHH-HHHHHhCCEEEECCCCCHHHHhhhh
Confidence 444 7889999999999999999986653
No 122
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=20.71 E-value=1.9e+02 Score=19.14 Aligned_cols=76 Identities=11% Similarity=-0.037 Sum_probs=44.6
Q ss_pred CHHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 13 TPNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 13 ~~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
...-+..+|++|+....-...-...++.+++.+... ...+++..++++=-.-....+...+++.......++.++.
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~----~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH----GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 355678899999987776655556667777776431 2356788777763211111112244555555556665543
No 123
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=20.68 E-value=39 Score=24.89 Aligned_cols=40 Identities=8% Similarity=-0.122 Sum_probs=23.7
Q ss_pred hhCCEeEEecc---ccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEe
Q 031827 18 AEADGILLGFP---TRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYS 64 (152)
Q Consensus 18 ~~aD~iIlgsP---~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s 64 (152)
.++|+|++.-- .+.......+..|+.++.. .||+++.+++
T Consensus 104 ~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~-------~gk~iaaIC~ 146 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYK-------RGGVIGAVCH 146 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred hhCCEEEEeCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEECh
Confidence 46899998432 1333446677777777642 4555555543
No 124
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=20.57 E-value=1.7e+02 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=22.9
Q ss_pred hCCEeEEeccccCCCchHHHHHHHHHhc
Q 031827 19 EADGILLGFPTRFGMMAAQFKAFLDATG 46 (152)
Q Consensus 19 ~aD~iIlgsP~y~g~~~~~~k~flD~l~ 46 (152)
-+|++++.+|-|+.--...+..++..+.
T Consensus 110 Gadavlv~~P~y~~~s~~~l~~~f~~va 137 (304)
T 3l21_A 110 GAHGLLVVTPYYSKPPQRGLQAHFTAVA 137 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 4899999999998766677777777764
No 125
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=20.54 E-value=1.8e+02 Score=18.65 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=41.9
Q ss_pred HHHHhhCCEeEEeccccCCCchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEec
Q 031827 14 PNELAEADGILLGFPTRFGMMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVP 92 (152)
Q Consensus 14 ~~~i~~aD~iIlgsP~y~g~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v~ 92 (152)
..-+..+|++|+....-...-...++.|++.+... .-.+++..++++=-.-........+++...+...++.++.
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 44577899999987765544445566666665431 2246777777763211111112234555555666766553
No 126
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=20.13 E-value=27 Score=27.77 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=10.8
Q ss_pred hhCCEeEEeccc
Q 031827 18 AEADGILLGFPT 29 (152)
Q Consensus 18 ~~aD~iIlgsP~ 29 (152)
..+||||++|||
T Consensus 227 ~~~DGliVsTPT 238 (388)
T 3afo_A 227 TTADGVALATPT 238 (388)
T ss_dssp EEEEEEEEECTG
T ss_pred ecCCeEEEeCCC
Confidence 369999999998
No 127
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=20.02 E-value=2e+02 Score=22.24 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=34.4
Q ss_pred ccccCCCc--hHHHHHHHHHhcCccccC-CCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHcCcEEe
Q 031827 27 FPTRFGMM--AAQFKAFLDATGGLWRSQ-QLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFV 91 (152)
Q Consensus 27 sP~y~g~~--~~~~k~flD~l~~~~~~~-~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~g~~~v 91 (152)
.|++|+.- .-+...+.|-+.-....+ .++|+.++.+|-. ..++...+...+..+|+.+.
T Consensus 123 vPVINa~~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~------~~~va~Sl~~~~~~~G~~v~ 184 (335)
T 1dxh_A 123 VPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDA------RNNMGNSLLLIGAKLGMDVR 184 (335)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCC------SSHHHHHHHHHHHHTTCEEE
T ss_pred CCEEcCCCCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCC------ccchHHHHHHHHHHcCCEEE
Confidence 57776321 223445555543111125 6888888877542 12567778878888888775
No 128
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=20.00 E-value=73 Score=24.34 Aligned_cols=61 Identities=10% Similarity=-0.023 Sum_probs=37.8
Q ss_pred eccccCC---CchHHHHHHHHHhcCccccCCCCCCeEEEEEecCCCCCCCcchHHHHHHHHHHc-CcEEe
Q 031827 26 GFPTRFG---MMAAQFKAFLDATGGLWRSQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHH-GMIFV 91 (152)
Q Consensus 26 gsP~y~g---~~~~~~k~flD~l~~~~~~~~l~gK~~~~~~s~g~~~gg~~~~~~~~~~~l~~~-g~~~v 91 (152)
..|++|+ .-.-+...+.|-+.-....+.++|+.++.+|-.- ..++...+...+..+ |+++.
T Consensus 116 ~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~-----~~rva~Sl~~~~~~~~g~~v~ 180 (299)
T 1pg5_A 116 DIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLK-----YARTVNSLLRILTRFRPKLVY 180 (299)
T ss_dssp SSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECCS-----SCHHHHHHHHHGGGSCCSEEE
T ss_pred CCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCC-----CCchHHHHHHHHHhCCCCEEE
Confidence 3688886 2344455666654321123578999998887531 124577777777778 88764
Done!