Query 031829
Match_columns 152
No_of_seqs 110 out of 132
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 99.9 4.3E-27 9.2E-32 181.0 11.9 129 7-137 1-149 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.8 1.7E-19 3.7E-24 141.2 10.8 130 14-147 1-152 (154)
3 PF01284 MARVEL: Membrane-asso 98.9 7.5E-08 1.6E-12 70.9 12.0 129 12-144 5-144 (144)
4 KOG4016 Synaptic vesicle prote 72.7 52 0.0011 28.0 9.7 113 13-142 25-163 (233)
5 PF12304 BCLP: Beta-casein lik 57.8 1.1E+02 0.0024 25.4 10.1 98 49-149 43-162 (188)
6 PF06016 Reovirus_L2: Reovirus 16.2 12 0.00027 38.6 -4.1 24 84-107 882-905 (1289)
7 TIGR03068 srtB_sig_NPQTN sorta 15.7 2.4E+02 0.0051 17.3 2.9 24 38-61 6-29 (33)
8 PTZ00201 amastin surface glyco 15.2 1.4E+02 0.003 24.6 2.4 34 115-149 66-99 (192)
9 COG0833 LysP Amino acid transp 12.7 5.1E+02 0.011 24.8 5.7 54 11-66 370-423 (541)
10 PF14898 DUF4491: Domain of un 12.6 4.9E+02 0.011 19.3 4.5 40 39-78 53-92 (94)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.95 E-value=4.3e-27 Score=181.00 Aligned_cols=129 Identities=27% Similarity=0.350 Sum_probs=119.7
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHhhcccc------------cccchhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCCC
Q 031829 7 ALGSSASLALRFGQTIFSSGSILFMSFHVE------------FYSYTSFCYLVTVMGLVIPWSMALGLVDGYAVFFKNLP 74 (152)
Q Consensus 7 ~pgt~~~L~LR~~q~~fa~~sl~~M~s~~~------------F~s~TaF~YLVa~~~Lq~lwSl~la~~d~yall~k~~l 74 (152)
++++..++.||+.|++++++|+++|++++| |+++++|+|+|+++++++.||+.|++.++|.+.+|+ .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~ 79 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L 79 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 357789999999999999999999999998 999999999999999999999999999999999999 7
Q ss_pred CCcceeeeeehhhHHHHHHHHhhhcchhhHHHhhhcCCCC------CCCcc--cchHHHHHHHHHHHHHHH
Q 031829 75 RRPRVMLFVIAGDWVLAFLSLAAACSTASVTELLMHASQP------NCPAK--LCNRYQISAATAFLSWFM 137 (152)
Q Consensus 75 ~~~~~~~l~~vGD~V~a~L~~aAAcaaagvt~L~~~d~~~------~C~~~--~C~~~~~S~amAFlswf~ 137 (152)
+++...++.+++||+.+||+++|++++++++.+.++| .+ .|... +|+|++.|++++|++|++
T Consensus 80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g-~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKG-NSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 7778888899999999999999999999999888877 43 69876 499999999999999974
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.81 E-value=1.7e-19 Score=141.21 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhHHHHhhcccc--------------cccchhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCCCCCcce
Q 031829 14 LALRFGQTIFSSGSILFMSFHVE--------------FYSYTSFCYLVTVMGLVIPWSMALGLVDGYAVFFKNLPRRPRV 79 (152)
Q Consensus 14 L~LR~~q~~fa~~sl~~M~s~~~--------------F~s~TaF~YLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~~ 79 (152)
+.||+..+.++++|.++|++++| |+++.+|.|+|++++..+.||+.|+...+|.+.+++.+ ..
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~---~~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF---FK 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch---hH
Confidence 47999999999999999999854 78899999999999999999999999999998877766 22
Q ss_pred eeeeehhhHHHHHHHHhhhcchhhHHHhhhcCCCC------CCCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031829 80 MLFVIAGDWVLAFLSLAAACSTASVTELLMHASQP------NCPAK--LCNRYQISAATAFLSWFMLFASSLFNLW 147 (152)
Q Consensus 80 ~~l~~vGD~V~a~L~~aAAcaaagvt~L~~~d~~~------~C~~~--~C~~~~~S~amAFlswf~~~~S~l~~~w 147 (152)
.++.++|||+++||++++++++++|+++.+++ .+ .|... +|+|...|+.++|+++++...+++++-.
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G-~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~ 152 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLG-NKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAI 152 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56689999999999999999999999998877 44 47763 6999999999999999999999998754
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.85 E-value=7.5e-08 Score=70.89 Aligned_cols=129 Identities=22% Similarity=0.199 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHhHHHHhhccc------ccccchhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCCCCCcceeeeeeh
Q 031829 12 ASLALRFGQTIFSSGSILFMSFHV------EFYSYTSFCYLVTVMGLVIPWSMALGLVDGYAVFFKNLPRRPRVMLFVIA 85 (152)
Q Consensus 12 ~~L~LR~~q~~fa~~sl~~M~s~~------~F~s~TaF~YLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~~v 85 (152)
-...+|+.|++++.+.+..++... .....++.-|.+++.++..++++...+.+.+. .|+..+ .......++
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~~-~~~~~~~~~ 81 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKYRPR-IPWPLVEFI 81 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhcccc-cccchhHHH
Confidence 456899999999999999998776 35667788899999999999999999999988 222222 222333588
Q ss_pred hhHHHHHHHHhhhcchhhHHHhhhc-----CCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 031829 86 GDWVLAFLSLAAACSTASVTELLMH-----ASQPNCPAKLCNRYQISAATAFLSWFMLFASSLF 144 (152)
Q Consensus 86 GD~V~a~L~~aAAcaaagvt~L~~~-----d~~~~C~~~~C~~~~~S~amAFlswf~~~~S~l~ 144 (152)
.|.+.+.+-+++++..+--..-.+. + ...+....|+..+++.+++|++|++-..|..+
T Consensus 82 ~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~l 144 (144)
T PF01284_consen 82 FDAVFAILWLAAFIALAAYLSDHSCSNTGND-YSYSGCSRCGAWKAAAAFGFLNWLLFIVSAVL 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCC-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999988776643322111 1 22223345999999999999999999888753
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.68 E-value=52 Score=28.04 Aligned_cols=113 Identities=18% Similarity=0.099 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHhHHHHhhcccc--------------cccchhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCCCCCcc
Q 031829 13 SLALRFGQTIFSSGSILFMSFHVE--------------FYSYTSFCYLVTVMGLVIPWSMALGLVDGYAVFFKNLPRRPR 78 (152)
Q Consensus 13 ~L~LR~~q~~fa~~sl~~M~s~~~--------------F~s~TaF~YLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~ 78 (152)
...+|+..++|+++-+.-..+ .+ ..+-.+=.|=+++-.+..+=++...++|+|-=......-+++
T Consensus 25 ~ti~R~~~~lFsliVf~si~~-eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rkr 103 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFGSIVN-EGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRKR 103 (233)
T ss_pred hhHHHHHHHHHHHhheeeecc-ccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHH
Confidence 468999999999887764433 23 233445568899999999999999999999654444333333
Q ss_pred eeeeeehhhHHHH----------HHHHhhhcchhhHHHhhhcCCCCCCCccc--chHHHHHHHHHHHHHHHHHHHH
Q 031829 79 VMLFVIAGDWVLA----------FLSLAAACSTASVTELLMHASQPNCPAKL--CNRYQISAATAFLSWFMLFASS 142 (152)
Q Consensus 79 ~~~l~~vGD~V~a----------~L~~aAAcaaagvt~L~~~d~~~~C~~~~--C~~~~~S~amAFlswf~~~~S~ 142 (152)
. +.+|.+.+ +..|+..= . .+++ ++|+ -+..+++|+++|+|-+.-..-+
T Consensus 104 a----Vl~Dl~~SalwtflwfvGFc~l~nqw---q----vs~p-----~~~~~~a~saraaIafsffSilsW~~~A 163 (233)
T KOG4016|consen 104 A----VLADLGVSALWAFLWFVGFCFLANQW---Q----VSKP-----KENPLGAGSARAAIAFSFFSILSWGGQA 163 (233)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHh---h----ccCC-----CCCCcCcchHHHHHHHHHHHHHHHHHHH
Confidence 3 33555443 22333210 0 1122 3443 7799999999887755444333
No 5
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=57.85 E-value=1.1e+02 Score=25.41 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhcCCCCCc-ceeeeeehhhHHHHHHHHhhhcch-----hhHHHhhh----------cC-
Q 031829 49 VMGLVIPWSMALGLVDGYAVFFKNLPRRP-RVMLFVIAGDWVLAFLSLAAACST-----ASVTELLM----------HA- 111 (152)
Q Consensus 49 ~~~Lq~lwSl~la~~d~yall~k~~l~~~-~~~~l~~vGD~V~a~L~~aAAcaa-----agvt~L~~----------~d- 111 (152)
++++.+-=.+.-....|-+++..|.++++ ..|.+++.+ . .-.++++||+- ..+|+-.+ .|
T Consensus 43 sNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S-~--ln~LlSaAc~vGL~~ai~~Tv~~~Gr~Ll~~C~f~~~ 119 (188)
T PF12304_consen 43 SNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVS-L--LNALLSAACAVGLLLAISLTVANQGRNLLAGCNFTNL 119 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHhCchhHhhcCCCCCh
Confidence 34444443444445667777777777776 455544333 2 23345666653 23333332 11
Q ss_pred -----CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031829 112 -----SQPNCPAKLCNRYQISAATAFLSWFMLFASSLFNLWLL 149 (152)
Q Consensus 112 -----~~~~C~~~~C~~~~~S~amAFlswf~~~~S~l~~~w~l 149 (152)
-.+.||.++.+=|.++.++=+.+-++.+.=+.+++|-.
T Consensus 120 ~~~~~it~dCPFDpTRIY~TtL~LW~ps~ll~~~EavfS~rCf 162 (188)
T PF12304_consen 120 NALSSITNDCPFDPTRIYDTTLALWIPSILLSAVEAVFSVRCF 162 (188)
T ss_pred hhccCCCCCCCCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12479999999999999999999999999999988864
No 6
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=16.18 E-value=12 Score=38.65 Aligned_cols=24 Identities=46% Similarity=0.308 Sum_probs=17.4
Q ss_pred ehhhHHHHHHHHhhhcchhhHHHh
Q 031829 84 IAGDWVLAFLSLAAACSTASVTEL 107 (152)
Q Consensus 84 ~vGD~V~a~L~~aAAcaaagvt~L 107 (152)
.=+|-|+++|+|.||||+++++..
T Consensus 882 ~~~D~vtailSLGAAaA~a~~tl~ 905 (1289)
T PF06016_consen 882 TPFDAVTAILSLGAAAASANVTLD 905 (1289)
T ss_dssp ---SEEEECTCHHHHHHHCT--HH
T ss_pred CCCCEEEEEeeehhhhhcCCCcHH
Confidence 346889999999999999999854
No 7
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=15.75 E-value=2.4e+02 Score=17.26 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=17.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 031829 38 YSYTSFCYLVTVMGLVIPWSMALG 61 (152)
Q Consensus 38 ~s~TaF~YLVa~~~Lq~lwSl~la 61 (152)
....+|.|++...++..+.+..+.
T Consensus 6 ~gtp~y~y~Ip~v~lflL~~~~i~ 29 (33)
T TIGR03068 6 AGTPAYIYAIPVASLALLIAITLF 29 (33)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHH
Confidence 456789999999887777766543
No 8
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=15.19 E-value=1.4e+02 Score=24.61 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=27.1
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031829 115 NCPAKLCNRYQISAATAFLSWFMLFASSLFNLWLL 149 (152)
Q Consensus 115 ~C~~~~C~~~~~S~amAFlswf~~~~S~l~~~w~l 149 (152)
.|++.. +|++++-|+|.+|=+....++++.+..+
T Consensus 66 ~C~~rr-~~Fr~aqAfaIISI~v~~aA~vlg~~~l 99 (192)
T PTZ00201 66 NCPARI-LQFRVAQALAVISILVYGAAFVLGLVLL 99 (192)
T ss_pred hChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455433 7799999999999999999999886543
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=12.66 E-value=5.1e+02 Score=24.80 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHhHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 031829 11 SASLALRFGQTIFSSGSILFMSFHVEFYSYTSFCYLVTVMGLVIPWSMALGLVDGY 66 (152)
Q Consensus 11 ~~~L~LR~~q~~fa~~sl~~M~s~~~F~s~TaF~YLVa~~~Lq~lwSl~la~~d~y 66 (152)
+.|..++..-.......+++|.+.. .+-+.|-||+++.++...-.-.-.++.=|
T Consensus 370 r~GvP~~al~vt~~fg~lafl~~~~--~~~~vf~wL~~isg~s~~i~W~~I~~shi 423 (541)
T COG0833 370 RRGVPLVALLVTLLFGLLAFLNSSF--KETTVFNWLLNISGLSGFIAWGSICLSHI 423 (541)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666656666666666555 67779999999999887633333333333
No 10
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=12.55 E-value=4.9e+02 Score=19.32 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=32.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCCCCCcc
Q 031829 39 SYTSFCYLVTVMGLVIPWSMALGLVDGYAVFFKNLPRRPR 78 (152)
Q Consensus 39 s~TaF~YLVa~~~Lq~lwSl~la~~d~yall~k~~l~~~~ 78 (152)
+-+....++++.|..++||..=..-.--++..+.=++||+
T Consensus 53 ~~~~~S~llgv~g~s~lWsI~ElfeQ~kRV~kGWFP~NPk 92 (94)
T PF14898_consen 53 SNVIWSALLGVLGFSCLWSIGELFEQEKRVEKGWFPKNPK 92 (94)
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCC
Confidence 3344577899999999999998888887877777778874
Done!