Query 031829
Match_columns 152
No_of_seqs 110 out of 132
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyl_W VP1; non-enveloped viru 12.8 10 0.00036 37.8 -4.3 24 84-107 888-911 (1299)
2 4h31_A Otcase, ornithine carba 9.7 1.5E+02 0.0052 24.9 2.4 30 59-88 161-190 (358)
3 1g4d_A Repressor protein C; pr 9.3 1.6E+02 0.0056 19.2 1.9 15 3-17 12-26 (69)
4 1ej6_A Lambda2; icosahedral, n 8.6 15 0.0005 36.6 -4.8 24 84-107 881-904 (1289)
5 1tns_A MU-transposase; DNA-bin 7.4 2.1E+02 0.0071 19.1 1.9 15 3-17 12-26 (76)
6 1ckk_B Camkk, protein (RAT Ca2 7.4 2.1E+02 0.0073 15.7 1.6 14 64-77 12-25 (26)
7 1iq5_B Ca2+/calmodulin depende 7.2 2.4E+02 0.0083 15.6 1.8 15 63-77 11-25 (27)
8 3l1l_A Arginine/agmatine antip 7.0 6.9E+02 0.024 19.8 5.2 33 41-73 348-380 (445)
9 3u85_B Histone-lysine N-methyl 6.9 1.4E+02 0.0048 15.6 0.6 11 3-13 4-14 (21)
10 3eml_A Human adenosine A2A rec 5.9 5.8E+02 0.02 20.0 4.1 50 45-94 97-150 (488)
No 1
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=12.77 E-value=10 Score=37.75 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.2
Q ss_pred ehhhHHHHHHHHhhhcchhhHHHh
Q 031829 84 IAGDWVLAFLSLAAACSTASVTEL 107 (152)
Q Consensus 84 ~vGD~V~a~L~~aAAcaaagvt~L 107 (152)
.=+|-|+++|+|.||||+++++..
T Consensus 888 ~~~d~vtailSLGAA~a~a~~tl~ 911 (1299)
T 3iyl_W 888 IRCDSATAIFTIGAAAAAAGTDLI 911 (1299)
T ss_dssp CCCSEEEETTTHHHHHHHTTCCHH
T ss_pred CCCCEEEEeeechhhhhhCCCcHH
Confidence 345888999999999999998744
No 2
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=9.74 E-value=1.5e+02 Score=24.94 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=20.3
Q ss_pred HHHhhhhhHhhhcCCCCCcceeeeeehhhH
Q 031829 59 ALGLVDGYAVFFKNLPRRPRVMLFVIAGDW 88 (152)
Q Consensus 59 ~la~~d~yall~k~~l~~~~~~~l~~vGD~ 88 (152)
+|++.|.|.+...+..+.-.-+.+-++||.
T Consensus 161 tQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~ 190 (358)
T 4h31_A 161 TQILADFLTMLEHSQGKALADIQFAYLGDA 190 (358)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGCEEEEESCT
T ss_pred hHHHHHHHHHHHHhcCCCcCceEEEecCCC
Confidence 689999999987543222223455689995
No 3
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=9.29 E-value=1.6e+02 Score=19.18 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.6
Q ss_pred CCCCCCCCchhHHHH
Q 031829 3 EVPGALGSSASLALR 17 (152)
Q Consensus 3 ~~~g~pgt~~~L~LR 17 (152)
++||+|.|..|+-.|
T Consensus 12 ~l~glP~s~~gi~~~ 26 (69)
T 1g4d_A 12 AADGMPGSVAGVHYR 26 (69)
T ss_dssp TSTTSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 578999998887554
No 4
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=8.59 E-value=15 Score=36.62 Aligned_cols=24 Identities=42% Similarity=0.421 Sum_probs=20.4
Q ss_pred ehhhHHHHHHHHhhhcchhhHHHh
Q 031829 84 IAGDWVLAFLSLAAACSTASVTEL 107 (152)
Q Consensus 84 ~vGD~V~a~L~~aAAcaaagvt~L 107 (152)
.=+|-|++++++.||||.+++|..
T Consensus 881 ~~~D~vt~i~SLGAA~A~a~~tl~ 904 (1289)
T 1ej6_A 881 VRGDIVTCMLSLGAAAAGKSMTFD 904 (1289)
T ss_dssp CCCSEEEECSCHHHHHHHHTCCHH
T ss_pred CCCcEEEEEeechhhhhccCCcHH
Confidence 456889999999999999998743
No 5
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=7.45 E-value=2.1e+02 Score=19.10 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.2
Q ss_pred CCCCCCCCchhHHHH
Q 031829 3 EVPGALGSSASLALR 17 (152)
Q Consensus 3 ~~~g~pgt~~~L~LR 17 (152)
++||+|.|..|+-.|
T Consensus 12 ~l~gLP~s~~gi~~~ 26 (76)
T 1tns_A 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 567888888887554
No 6
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=7.42 E-value=2.1e+02 Score=15.70 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=10.4
Q ss_pred hhhHhhhcCCCCCc
Q 031829 64 DGYAVFFKNLPRRP 77 (152)
Q Consensus 64 d~yall~k~~l~~~ 77 (152)
-+=+++.||+++||
T Consensus 12 lvk~Mlr~~sf~nP 25 (26)
T 1ckk_B 12 LVKSMLRKRSFGNP 25 (26)
T ss_dssp HHHHHCSSSCCCCC
T ss_pred HHHHHhhcccccCC
Confidence 35567788888887
No 7
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=7.23 E-value=2.4e+02 Score=15.60 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=11.4
Q ss_pred hhhhHhhhcCCCCCc
Q 031829 63 VDGYAVFFKNLPRRP 77 (152)
Q Consensus 63 ~d~yall~k~~l~~~ 77 (152)
+-+=+++.||+++||
T Consensus 11 ilvk~Ml~~~sf~nP 25 (27)
T 1iq5_B 11 ILVKAMGHRKRFGNP 25 (27)
T ss_dssp HHHHHHHHHTSSSCS
T ss_pred HHHHHHHhcccccCC
Confidence 345577889999987
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.03 E-value=6.9e+02 Score=19.82 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcCC
Q 031829 41 TSFCYLVTVMGLVIPWSMALGLVDGYAVFFKNL 73 (152)
Q Consensus 41 TaF~YLVa~~~Lq~lwSl~la~~d~yall~k~~ 73 (152)
+.|-+++.......+.+..+...-...+..|++
T Consensus 348 ~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 348 KEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 557777777777777777777777777776666
No 9
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=6.93 E-value=1.4e+02 Score=15.63 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=6.8
Q ss_pred CCCCCCCCchh
Q 031829 3 EVPGALGSSAS 13 (152)
Q Consensus 3 ~~~g~pgt~~~ 13 (152)
.+|-.||+.++
T Consensus 4 rfparpg~s~~ 14 (21)
T 3u85_B 4 RFPARPGTTGG 14 (26)
T ss_pred ccccCCCcccC
Confidence 45667776554
No 10
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=5.92 E-value=5.8e+02 Score=20.01 Aligned_cols=50 Identities=24% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhc----CCCCCcceeeeeehhhHHHHHHH
Q 031829 45 YLVTVMGLVIPWSMALGLVDGYAVFFK----NLPRRPRVMLFVIAGDWVLAFLS 94 (152)
Q Consensus 45 YLVa~~~Lq~lwSl~la~~d~yall~k----~~l~~~~~~~l~~vGD~V~a~L~ 94 (152)
|+.........|.+....+|=|-...+ +...+++......++=|+.+.+.
T Consensus 97 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~ 150 (488)
T 3eml_A 97 CFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 150 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHH
Confidence 444555667789999999999887654 22234444555566677776654
Done!