Query 031829
Match_columns 152
No_of_seqs 110 out of 132
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 09:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031829.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031829hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpma_ a.6.1.7 (A:) mu transp 22.3 21 0.0015 22.2 1.9 16 3-18 12-27 (69)
2 d1tnsa_ a.6.1.7 (A:) mu transp 16.4 33 0.0024 21.6 1.9 15 3-17 12-26 (76)
3 d1t4ba2 d.81.1.1 (A:134-354) A 11.6 13 0.00097 27.7 -1.4 26 64-89 193-218 (221)
4 d1u19a_ f.13.1.2 (A:) Rhodopsi 10.9 1.6E+02 0.012 20.3 4.7 58 36-93 28-89 (348)
5 d2hjsa2 d.81.1.1 (A:130-319) U 7.2 20 0.0014 26.1 -2.1 26 64-89 162-187 (190)
6 d1uxya1 d.145.1.2 (A:3-200) Ur 5.1 97 0.0071 21.8 0.9 12 3-14 104-115 (198)
7 d1mb4a2 d.81.1.1 (A:133-354) A 5.1 23 0.0017 26.4 -2.8 26 64-89 194-219 (222)
8 d1wiwa_ c.80.1.1 (A:) Glucose- 4.7 73 0.0053 24.3 -0.1 19 78-96 254-272 (284)
9 d2j4za1 d.144.1.7 (A:126-388) 4.1 2.5E+02 0.018 19.6 2.6 20 54-76 186-205 (263)
10 d1cm8a_ d.144.1.7 (A:) MAP kin 3.5 3E+02 0.022 19.6 2.7 21 54-77 201-221 (346)
No 1
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=22.26 E-value=21 Score=22.25 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=12.9
Q ss_pred CCCCCCCCchhHHHHH
Q 031829 3 EVPGALGSSASLALRF 18 (152)
Q Consensus 3 ~~~g~pgt~~~L~LR~ 18 (152)
++||+|+|..|+-.|.
T Consensus 12 gLpglP~s~~gv~~~A 27 (69)
T d1qpma_ 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 5799999999887553
No 2
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=16.41 E-value=33 Score=21.63 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.0
Q ss_pred CCCCCCCCchhHHHH
Q 031829 3 EVPGALGSSASLALR 17 (152)
Q Consensus 3 ~~~g~pgt~~~L~LR 17 (152)
++||+|+|..|+-.|
T Consensus 12 gLpglP~s~~gv~~~ 26 (76)
T d1tnsa_ 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 579999999887654
No 3
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=11.57 E-value=13 Score=27.70 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=20.5
Q ss_pred hhhHhhhcCCCCCcceeeeeehhhHH
Q 031829 64 DGYAVFFKNLPRRPRVMLFVIAGDWV 89 (152)
Q Consensus 64 d~yall~k~~l~~~~~~~l~~vGD~V 89 (152)
++|--+.|++..++..++++++||++
T Consensus 193 ~V~VGRIR~D~~~~~~l~lw~v~DNL 218 (221)
T d1t4ba2 193 TTPVGRLRKLNMGPEFLSAFTVGDQL 218 (221)
T ss_dssp CCCEEEEEECTTCTTEEEEEEEEETT
T ss_pred CeEEecccccCCCCCEEEEEEEeccc
Confidence 45555667778888899999999985
No 4
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.92 E-value=1.6e+02 Score=20.30 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=30.3
Q ss_pred ccccchhHHHH--HHHHHHHHHHHHHHHhhhhhHhhhcCCCCCcceeeee--ehhhHHHHHH
Q 031829 36 EFYSYTSFCYL--VTVMGLVIPWSMALGLVDGYAVFFKNLPRRPRVMLFV--IAGDWVLAFL 93 (152)
Q Consensus 36 ~F~s~TaF~YL--Va~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~--~vGD~V~a~L 93 (152)
+++..+.+-|- ...+++.++-++..=++=++.+.++|.+|++....+. .+.|-.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~ 89 (348)
T d1u19a_ 28 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89 (348)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 34444443333 2333333444443334456777778888887544333 6777765443
No 5
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.19 E-value=20 Score=26.14 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=20.0
Q ss_pred hhhHhhhcCCCCCcceeeeeehhhHH
Q 031829 64 DGYAVFFKNLPRRPRVMLFVIAGDWV 89 (152)
Q Consensus 64 d~yall~k~~l~~~~~~~l~~vGD~V 89 (152)
++|--+.|++..++..+.++++||++
T Consensus 162 ~v~VGRiR~d~~~~~~l~~w~v~Dnl 187 (190)
T d2hjsa2 162 ETYVGRVRAGQADPCQVNLWIVSDNV 187 (190)
T ss_dssp CEEEEEEEECSSCTTEEEEEEEECCC
T ss_pred CEEEEeeEcCCCCCCEEEEEEEeCCc
Confidence 35555667788888889999999974
No 6
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.10 E-value=97 Score=21.79 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=8.1
Q ss_pred CCCCCCCCchhH
Q 031829 3 EVPGALGSSASL 14 (152)
Q Consensus 3 ~~~g~pgt~~~L 14 (152)
-+.|-|||.||.
T Consensus 104 ~l~gIPGtvGGa 115 (198)
T d1uxya1 104 NLALIPGCVGSS 115 (198)
T ss_dssp GGTTCCSBGGGT
T ss_pred hhcccccccchh
Confidence 345778887774
No 7
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=5.09 E-value=23 Score=26.35 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=18.8
Q ss_pred hhhHhhhcCCCCCcceeeeeehhhHH
Q 031829 64 DGYAVFFKNLPRRPRVMLFVIAGDWV 89 (152)
Q Consensus 64 d~yall~k~~l~~~~~~~l~~vGD~V 89 (152)
|+|--+.|++...+..+.++++||++
T Consensus 194 ~V~VGRiR~d~~~~~~l~~wvv~DNL 219 (222)
T d1mb4a2 194 SVPVGRLRKMAMGDDFLNAFTVGDQL 219 (222)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceeeecCEecCCCCCEEEEEEEeccc
Confidence 34444555666677889999999985
No 8
>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein TTHA1346 {Thermus thermophilus [TaxId: 274]}
Probab=4.72 E-value=73 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.9
Q ss_pred ceeeeeehhhHHHHHHHHh
Q 031829 78 RVMLFVIAGDWVLAFLSLA 96 (152)
Q Consensus 78 ~~~~l~~vGD~V~a~L~~a 96 (152)
++..++.+|||+.-||.+.
T Consensus 254 rl~~LI~lgD~aS~YLAll 272 (284)
T d1wiwa_ 254 QVMALWYRMAWTAYYLALL 272 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678899999999998664
No 9
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.08 E-value=2.5e+02 Score=19.63 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhHhhhcCCCCC
Q 031829 54 IPWSMALGLVDGYAVFFKNLPRR 76 (152)
Q Consensus 54 ~lwSl~la~~d~yall~k~~l~~ 76 (152)
=+||+|..+ |.++.++.+.+
T Consensus 186 DiwSlGvil---yell~G~~Pf~ 205 (263)
T d2j4za1 186 DLWSLGVLC---YEFLVGKPPFE 205 (263)
T ss_dssp HHHHHHHHH---HHHHHSSCTTC
T ss_pred hhhhHhHHH---HHHhcCCCCCC
Confidence 369988876 67777776654
No 10
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.49 E-value=3e+02 Score=19.57 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhHhhhcCCCCCc
Q 031829 54 IPWSMALGLVDGYAVFFKNLPRRP 77 (152)
Q Consensus 54 ~lwSl~la~~d~yall~k~~l~~~ 77 (152)
=+||+|..+ |.++.++++.+.
T Consensus 201 DiwSlGvil---~ell~g~~pf~~ 221 (346)
T d1cm8a_ 201 DIWSVGCIM---AEMITGKTLFKG 221 (346)
T ss_dssp HHHHHHHHH---HHHHHSSCSSCC
T ss_pred hhhcchHHH---HHHHHCcCCCCC
Confidence 479998885 778888887653
Done!