Query 031830
Match_columns 152
No_of_seqs 96 out of 117
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 3.2E-37 6.9E-42 269.0 6.1 97 55-151 43-139 (355)
2 PF12937 F-box-like: F-box-lik 98.5 2.4E-08 5.2E-13 62.3 1.1 36 57-100 1-36 (47)
3 PLN03215 ascorbic acid mannose 98.3 2.6E-07 5.6E-12 81.8 2.8 69 55-134 2-74 (373)
4 PF00646 F-box: F-box domain; 98.3 6.1E-08 1.3E-12 59.7 -1.0 39 56-102 2-40 (48)
5 smart00256 FBOX A Receptor for 98.2 6.4E-07 1.4E-11 52.5 0.8 34 60-101 1-34 (41)
6 KOG2120 SCF ubiquitin ligase, 94.1 0.017 3.6E-07 52.6 0.5 56 56-119 97-154 (419)
7 KOG2997 F-box protein FBX9 [Ge 93.3 0.037 8.1E-07 49.9 1.3 44 54-100 101-147 (366)
8 KOG0274 Cdc4 and related F-box 64.7 1.6 3.6E-05 40.4 -0.8 43 53-103 104-146 (537)
9 KOG4341 F-box protein containi 57.5 5.8 0.00013 37.4 1.4 37 59-103 74-110 (483)
10 KOG0281 Beta-TrCP (transducin 55.3 6.1 0.00013 36.9 1.2 36 58-101 76-115 (499)
11 PF13013 F-box-like_2: F-box-l 46.9 11 0.00025 28.5 1.4 48 56-111 21-71 (109)
12 PF08150 FerB: FerB (NUC096) d 45.2 30 0.00066 25.1 3.3 33 108-148 42-76 (76)
13 PF09372 PRANC: PRANC domain; 38.2 17 0.00038 25.6 1.1 21 54-74 69-89 (97)
14 PHA02875 ankyrin repeat protei 35.3 28 0.00061 29.2 2.1 22 53-74 383-404 (413)
15 PHA03100 ankyrin repeat protei 28.3 33 0.00071 29.2 1.4 22 53-74 444-465 (480)
16 PRK00919 GMP synthase subunit 26.7 76 0.0016 27.7 3.3 19 54-72 264-282 (307)
17 PHA02989 ankyrin repeat protei 25.0 32 0.0007 30.2 0.8 22 53-74 455-476 (494)
18 PF14642 FAM47: FAM47 family 24.9 42 0.0009 29.5 1.4 38 57-104 138-178 (258)
19 PRK13890 conjugal transfer pro 24.4 1.1E+02 0.0024 22.9 3.4 35 57-104 84-118 (120)
20 PF10711 DUF2513: Hypothetical 21.9 72 0.0016 23.0 2.0 18 60-77 2-19 (102)
21 cd01997 GMP_synthase_C The C-t 20.6 1.2E+02 0.0026 26.2 3.4 19 54-72 253-271 (295)
22 KOG3926 F-box proteins [Amino 20.3 75 0.0016 28.9 2.1 41 54-101 199-249 (332)
23 KOG0269 WD40 repeat-containing 20.2 62 0.0013 32.6 1.7 23 120-142 150-173 (839)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=3.2e-37 Score=268.95 Aligned_cols=97 Identities=52% Similarity=0.927 Sum_probs=95.3
Q ss_pred CCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHhcCCCcccceeccccccCCCCCCCCeeeEEee
Q 031830 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR 134 (152)
Q Consensus 55 s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV~~pe~sgkiTFPislKQPGPRd~~~QCfIkR 134 (152)
+.|++||||+|.|||.|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++||||||||.++||||||
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEeeccccCC
Q 031830 135 NKKTSTFYLYLALTPCK 151 (152)
Q Consensus 135 nk~~sTy~LyLgLt~a~ 151 (152)
||+++|||||+||.+++
T Consensus 123 dks~~~~~Ly~~l~~~l 139 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHL 139 (355)
T ss_pred ccCCCceeeeecccccc
Confidence 99999999999998764
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.54 E-value=2.4e-08 Score=62.27 Aligned_cols=36 Identities=31% Similarity=0.646 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (152)
Q Consensus 57 WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k 100 (152)
|.+||+|+|..||..++. +|+..|+.|||+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 789999999999999933 489999999999999984
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.34 E-value=2.6e-07 Score=81.81 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHh-cCCCcccceeccccccC---CCCCCCCeee
Q 031830 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-KSPFLSGKITFPSCLKQ---PGPREFPHQC 130 (152)
Q Consensus 55 s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV-~~pe~sgkiTFPislKQ---PGPRd~~~QC 130 (152)
..|++||+|||..|..|| |++-|++.-++||++||..+...- ++|..+- ..+-+++ +.|-.. .+|
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~ 70 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGVGKKNPFRTR---PLILFNPINPSETLTD-DRS 70 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccccccCCcccc---cccccCcccCCCCccc-ccc
Confidence 469999999999999999 999999999999999999876532 1221111 1122333 444443 778
Q ss_pred EEee
Q 031830 131 LIRR 134 (152)
Q Consensus 131 fIkR 134 (152)
+|++
T Consensus 71 ~~~~ 74 (373)
T PLN03215 71 YISR 74 (373)
T ss_pred cccc
Confidence 8887
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.33 E-value=6.1e-08 Score=59.70 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHH
Q 031830 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (152)
Q Consensus 56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEi 102 (152)
.|.+||+|++.+||.+++. +++++|+.||++|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 4789999999999999955 57999999999999998764
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.15 E-value=6.4e-07 Score=52.53 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830 60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 60 LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
||+|++..|+.+| +. +++.+|+.|||+||.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 55 7999999999999998864
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.017 Score=52.57 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHH--hcCCCcccceecccccc
Q 031830 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI--VKSPFLSGKITFPSCLK 119 (152)
Q Consensus 56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEi--V~~pe~sgkiTFPislK 119 (152)
.|-.||.|+|.+||.-| .-++....++||++|.+++.+= -......|+.--|+++-
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~ 154 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLG 154 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHH
Confidence 39999999999999988 4589999999999999988752 24455556655555543
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.34 E-value=0.037 Score=49.93 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.8
Q ss_pred CCCCCC---CCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830 54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (152)
Q Consensus 54 ~s~WA~---LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k 100 (152)
|+.|-+ ||+|+|-.||+++-.+. =.-++.+.|++|||.|+-.++
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHc
Confidence 567755 99999999999995332 123678899999999877654
No 8
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=64.68 E-value=1.6 Score=40.41 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHh
Q 031830 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV 103 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV 103 (152)
+..-=..||.||.--||..| +. ++..+|+.||+.|+.++..=.
T Consensus 104 ~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred ccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhccc
Confidence 55556779999999999999 55 689999999999999876544
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=57.51 E-value=5.8 Score=37.40 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHh
Q 031830 59 GLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV 103 (152)
Q Consensus 59 ~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV 103 (152)
.|||||+.-||.-|+. +..--||.||+.|--.+-|..
T Consensus 74 ~LPpEl~lkvFS~LDt--------ksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDT--------KSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhH--------HHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999944 566679999999998887765
No 10
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=55.29 E-value=6.1 Score=36.94 Aligned_cols=36 Identities=25% Similarity=0.648 Sum_probs=29.5
Q ss_pred CCCC----HHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830 58 AGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (152)
Q Consensus 58 A~LP----PELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE 101 (152)
..|| .|+-..|+..|++ .++-+|--||+.|+++..+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~--------~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDA--------LSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HhcccccHHHHHHHHHHhcch--------hhhhHHHHHHHHHHHHhcc
Confidence 4577 7888888888855 6888999999999998754
No 11
>PF13013 F-box-like_2: F-box-like domain
Probab=46.90 E-value=11 Score=28.54 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhh---hHHHHHHHHhcCCCcccc
Q 031830 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCK---RWREITKDIVKSPFLSGK 111 (152)
Q Consensus 56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR---~WR~i~kEiV~~pe~sgk 111 (152)
+=-+||.|||..|+..-.. ....+.-..|+ +||......+..|+.|-.
T Consensus 21 tl~DLP~ELl~~I~~~C~~--------~~l~~l~~~~~~~r~~r~~~~~~L~~p~~c~~ 71 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCND--------PILLALSRTCRAYRSWRDHIWYLLPKPQSCTR 71 (109)
T ss_pred chhhChHHHHHHHHhhcCc--------HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3567999999999998843 23334444554 666665666666766643
No 12
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=45.24 E-value=30 Score=25.13 Aligned_cols=33 Identities=36% Similarity=0.664 Sum_probs=22.6
Q ss_pred cccceeccccccCCCCCC--CCeeeEEeecCCCceeEEeeccc
Q 031830 108 LSGKITFPSCLKQPGPRE--FPHQCLIRRNKKTSTFYLYLALT 148 (152)
Q Consensus 108 ~sgkiTFPislKQPGPRd--~~~QCfIkRnk~~sTy~LyLgLt 148 (152)
.|||+. .+-||.||-+. ..|+|-+. -||.|||+
T Consensus 42 ~CGk~q-t~flk~P~~~~~~~~i~akl~-------v~lWlGl~ 76 (76)
T PF08150_consen 42 FCGKIQ-TLFLKYPGKKGKGWKIPAKLR-------VYLWLGLA 76 (76)
T ss_pred ccCeeE-EEEEECccccCCCCcEeEEEE-------EEEEcccC
Confidence 466653 56689988543 47888775 47888885
No 13
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=38.23 E-value=17 Score=25.61 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCCCCCCHHHHHHHHhhhhc
Q 031830 54 SGSWAGLLPELLGEIIRRVET 74 (152)
Q Consensus 54 ~s~WA~LPPELL~dIi~RlE~ 74 (152)
++.|..||.|+-..|+..|..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~ 89 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSN 89 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCH
Confidence 378999999999999998854
No 14
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.34 E-value=28 Score=29.22 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhc
Q 031830 53 SSGSWAGLLPELLGEIIRRVET 74 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~ 74 (152)
.++.|..||+|+-..|+..|..
T Consensus 383 ~~~~w~~LP~Eik~~Il~~l~~ 404 (413)
T PHA02875 383 DESKWNILPHEIKYLILEKIGN 404 (413)
T ss_pred cccchhcCcHHHHHHHHHHhcc
Confidence 4678999999999999999854
No 15
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.34 E-value=33 Score=29.21 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHHhhhhc
Q 031830 53 SSGSWAGLLPELLGEIIRRVET 74 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~ 74 (152)
.++.|..||+|+...|+..|..
T Consensus 444 ~~~~w~~lP~Eik~~Il~~l~~ 465 (480)
T PHA03100 444 KNTYWNILPIEIKYKILEYLSN 465 (480)
T ss_pred cCCchhhCcHHHHHHHHHhCCH
Confidence 3568999999999999999954
No 16
>PRK00919 GMP synthase subunit B; Validated
Probab=26.70 E-value=76 Score=27.70 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHhhh
Q 031830 54 SGSWAGLLPELLGEIIRRV 72 (152)
Q Consensus 54 ~s~WA~LPPELL~dIi~Rl 72 (152)
.-.|+.||-|+|..|=+|+
T Consensus 264 ta~~~~~~~~~l~~~~~~i 282 (307)
T PRK00919 264 TADAPELPWEVLQRISSRI 282 (307)
T ss_pred ccCcccCCHHHHHHHHHHh
Confidence 4569999999999998887
No 17
>PHA02989 ankyrin repeat protein; Provisional
Probab=25.04 E-value=32 Score=30.17 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhc
Q 031830 53 SSGSWAGLLPELLGEIIRRVET 74 (152)
Q Consensus 53 ~~s~WA~LPPELL~dIi~RlE~ 74 (152)
.++.|..||+|+...|+..|..
T Consensus 455 ~~~~w~~LP~Eik~~Il~~L~~ 476 (494)
T PHA02989 455 KKNYWMYLPIEIQINILEYLTF 476 (494)
T ss_pred cccHHHhCCHHHHHHHHHcCCH
Confidence 4578999999999999999954
No 18
>PF14642 FAM47: FAM47 family
Probab=24.87 E-value=42 Score=29.47 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHhhhhcc---cCCCCCccceeeehhhhhhHHHHHHHHhc
Q 031830 57 WAGLLPELLGEIIRRVETT---EDSWPHRQNVVACACVCKRWREITKDIVK 104 (152)
Q Consensus 57 WA~LPPELL~dIi~RlE~s---e~~WPaRk~VVaCA~VCR~WR~i~kEiV~ 104 (152)
-.+||||||..|+.=|+.. |+.| +-|.-++.-+++-.+
T Consensus 138 eE~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept~ 178 (258)
T PF14642_consen 138 EEDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPTE 178 (258)
T ss_pred cccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCcc
Confidence 4569999999999988543 4555 446777776665543
No 19
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=24.38 E-value=1.1e+02 Score=22.89 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHhc
Q 031830 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVK 104 (152)
Q Consensus 57 WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV~ 104 (152)
...+||.+.+ ++.+| |.. =|-|.|.|-+-++.+++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~-----PA~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEH-----QAFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCc-----cHHHHHHHHHHHHHHHc
Confidence 4578998665 88888 433 25799999999888775
No 20
>PF10711 DUF2513: Hypothetical protein (DUF2513); InterPro: IPR019650 The function of this family is not known.
Probab=21.92 E-value=72 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.8
Q ss_pred CCHHHHHHHHhhhhcccC
Q 031830 60 LLPELLGEIIRRVETTED 77 (152)
Q Consensus 60 LPPELL~dIi~RlE~se~ 77 (152)
+.+||+|+||..+|+.+.
T Consensus 2 rd~DlIR~iLl~iE~~~~ 19 (102)
T PF10711_consen 2 RDMDLIRDILLEIEENPD 19 (102)
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 678999999999999754
No 21
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=20.56 E-value=1.2e+02 Score=26.18 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.9
Q ss_pred CCCCCCCCHHHHHHHHhhh
Q 031830 54 SGSWAGLLPELLGEIIRRV 72 (152)
Q Consensus 54 ~s~WA~LPPELL~dIi~Rl 72 (152)
.-.|+.+|.|+|..|-+|+
T Consensus 253 t~~~~~~~~~~l~~~~~~i 271 (295)
T cd01997 253 TADWARLPYEVLEKISNRI 271 (295)
T ss_pred cCCCccCCHHHHHHHHHHh
Confidence 4569999999999999887
No 22
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=20.33 E-value=75 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhh----------hhHHHHHHH
Q 031830 54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVC----------KRWREITKD 101 (152)
Q Consensus 54 ~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VC----------R~WR~i~kE 101 (152)
.-.-.+||-|++..||.|+ |.-+|++.-|.|= +-|+.+|.-
T Consensus 199 ~ltl~dLP~e~vl~Il~rl-------sDh~dL~s~aqa~etl~~l~~e~~iWkkLcqf 249 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRL-------SDHRDLESLAQAWETLAKLSEERRIWKKLCQF 249 (332)
T ss_pred CCCcccchHHHHHHHHHHc-------cCcchHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999 5555555555443 456666643
No 23
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.24 E-value=62 Score=32.65 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.6
Q ss_pred CCCCCCCCeeeE-EeecCCCceeE
Q 031830 120 QPGPREFPHQCL-IRRNKKTSTFY 142 (152)
Q Consensus 120 QPGPRd~~~QCf-IkRnk~~sTy~ 142 (152)
--|-+|+.|.|| +|++++++||+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred EecCCCceEEEEeeeccccccccc
Confidence 359999999999 77788899885
Done!