BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031834
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA 61
SL G++E VEIKA A F K HHVS A P +Q DL EG+WG GS++F Y
Sbjct: 14 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62 NGKSDLSCKVIMEEIDYENNKITFKVIEGNLLDQYKSFCCFFQVTPK--GEGSFVTWTLK 119
+ K +E ++ + N ITF+VIEG+L+ +YKSF QVTPK G GS V W L+
Sbjct: 74 HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLE 133
Query: 120 YEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 151
YEK +E V P +LQ CV+V+K++ L+ +
Sbjct: 134 YEKISEEVAHPETLLQFCVEVSKEIDEHLLAE 165
>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
Length = 122
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 62 NGKSDLSCKVIMEEIDYENNKITFKVIEGNLLDQYKSFCCFFQVTP--KGEGSFVTWTLK 119
NGK+++ E +D T + + +K+ VTP G+GS V WT
Sbjct: 35 NGKTEI------EAVDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFH 88
Query: 120 YEKPNENVPEPAAMLQLCV 138
+EK ++++ +P +++ V
Sbjct: 89 FEKVHKDIDDPHSIIDESV 107
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
In Complex With Cytokinin And Ta6br12
Length = 155
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKS 65
Q E V ++A + + + F + V P V+ V L+EG+ G +IF N
Sbjct: 8 QTELSVRLEALWAVLSKDFITV---VPKVLPHIVKDVQLIEGDGGVGTILIF----NFLP 60
Query: 66 DLSCKVIMEEI---DYENNKITFKVIEGNLLDQYKSF 99
++S EEI D +++I +VIEG L Q S+
Sbjct: 61 EVSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSY 97
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 31 VSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSC-KVIMEEIDYENNKITFKVIE 89
V P+ V+ V ++EG+ G +IF + G + ++ + ++ E D ++ I +V+E
Sbjct: 30 VPKVLPNIVKDVQVIEGDGGVGTKLIF-NFLPGIAPVNYQREVITEYDELSHTIGLQVVE 88
Query: 90 GNLLDQYKSFC-CFFQVTPKGEG-SFVTWTLKYEKPNENVPE 129
G L+Q S+ FQ + E + V + Y+ +E + E
Sbjct: 89 GGYLNQGLSYYKTTFQFSAISENKTLVNVKISYDHESELIEE 130
>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At1g53520 (Atfap3)
Length = 217
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 10 GVEIKAPASTVREYFCSKLHHVSSACPDKVQS-----VDLLEGEWGKAGSVIFGRYANGK 64
GV++ A V E S L + D++Q V + + + K+ ++ R +GK
Sbjct: 52 GVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRDVDGK 111
Query: 65 S--DLSCKVIMEEIDYENNKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFV--TW 116
+ D + I I +++ T + +FCC FQ P +GS + TW
Sbjct: 112 TFWDALDEAISPRIKSPSSEDTTAL---------STFCCIFQNRPLNKGSVILLTW 158
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 29.3 bits (64), Expect = 0.85, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 59 RYANGKSDLSCKVIMEEIDYENNKIT 84
+YA GK L + + E+DYENNK+T
Sbjct: 91 KYAKGKP-LEADLTVNELDYENNKMT 115
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 29.3 bits (64), Expect = 0.85, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 59 RYANGKSDLSCKVIMEEIDYENNKIT 84
+YA GK L + + E+DYENNK+T
Sbjct: 91 KYAKGKP-LEADLTVNELDYENNKMT 115
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 29.3 bits (64), Expect = 0.85, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 59 RYANGKSDLSCKVIMEEIDYENNKIT 84
+YA GK L + + E+DYENNK+T
Sbjct: 97 KYAKGKP-LEADLTVNELDYENNKMT 121
>pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|B Chain B, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|C Chain C, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|D Chain D, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
Length = 336
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 37 DKVQSVDLLEG---EWGKAGSVIFGRYANGKSDLSCKVIMEEIDY 78
D+++S+ EG E GK GR+ GKSD EEI++
Sbjct: 88 DEIKSLKFTEGFDIENGKKVQTYPGRFPXGKSDFRVHTFEEEIEF 132
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR++ G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRFSYG 222
>pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
pdb|1YDY|B Chain B, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
Length = 356
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 37 DKVQSVDLLEG---EWGKAGSVIFGRYANGKSDLSCKVIMEEIDY 78
D+++S+ EG E GK GR+ GKSD EEI++
Sbjct: 110 DEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEF 154
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 31 VSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEG 90
V P + SV+ +EG G G++ + G K ++E+D+ N K + VIEG
Sbjct: 30 VPKVAPQAISSVENIEGNGG-PGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEG 88
Query: 91 NLL-DQYKSFCCFFQV--TPKGEGSFVTWTLKYE 121
+ D + ++ TP G GS + + KY
Sbjct: 89 GPIGDTLEKISNEIKIVATPDG-GSILKISNKYH 121
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 35 CPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNLL- 93
P + SV+ +EG G G++ + G K ++E+D+ N K + VIEG +
Sbjct: 34 APQAISSVENIEGNGG-PGTIKKISFPEGLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIG 92
Query: 94 DQYKSFCCFFQV--TPKGEGSFVTWTLKYE 121
D + ++ TP G GS + + KY
Sbjct: 93 DTLEKISNEIKIVATPDG-GSILKISNKYH 121
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 31 VSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEG 90
V P + SV+ +EG G G++ + G K ++E+D+ N K + VIEG
Sbjct: 30 VPKVAPQAISSVENIEGNGG-PGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEG 88
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 35 CPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNLL- 93
P + SV+ +EG G G++ + G K ++E+D+ N K + VIEG +
Sbjct: 34 APQAISSVENIEGNGG-PGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIG 92
Query: 94 DQYKSFCCFFQV--TPKGEGSFVTWTLKYE 121
D + ++ TP G GS + + KY
Sbjct: 93 DTLEKISNEIKIVATPDG-GSILKISNKYH 121
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 35 CPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNLL- 93
P + SV+ +EG G G++ + G K ++E+D+ N K + VIEG +
Sbjct: 34 APQAISSVENIEGNGG-PGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIG 92
Query: 94 DQYKSFCCFFQV--TPKGEGSFVTWTLKYE 121
D + ++ TP G GS + + KY
Sbjct: 93 DTLEKISNEIKIVATPDG-GSILKISNKYH 121
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 35 CPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNLL- 93
P + SV+ +EG G G++ + G K ++E+D+ N K ++ VIEG +
Sbjct: 34 APQAISSVENIEGNGG-PGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVG 92
Query: 94 DQYKSFCCFFQV--TPKGEGSFVTWTLKYE 121
D + ++ TP G GS + KY
Sbjct: 93 DTLEKISNEIKIVATPNG-GSILKINNKYH 121
>pdb|1QA1|A Chain A, Tailspike Protein, Mutant V331g
Length = 554
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGR--YANGKS 65
+FC + + S D + + + L G+WGK VI GR Y +G S
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSGSS 221
>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
Length = 666
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 288 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 329
>pdb|2VFM|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666)
Length = 559
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|1QA2|A Chain A, Tailspike Protein, Mutant A334v
Length = 554
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 217
>pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a Mutant
Length = 554
Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKS 65
+FC + + S D + + + L G+WGK VI GR + G +
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSA 219
>pdb|3TS0|A Chain A, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
pdb|3TS0|B Chain B, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
Length = 146
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE 48
E K P + +FC ++H+ ++CP K Q +G+
Sbjct: 110 ECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK 146
>pdb|3TRZ|A Chain A, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|B Chain B, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|C Chain C, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|D Chain D, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|E Chain E, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|F Chain F, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TS2|A Chain A, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
pdb|3TS2|B Chain B, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
Length = 148
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE 48
E K P + +FC ++H+ ++CP K Q +G+
Sbjct: 112 ECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK 148
>pdb|2CQF|A Chain A, Solution Structure Of The Zinc-Finger Domain In Lin-28
Length = 63
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAG 53
E K P + +FC + H+ ++CP K Q +G +G
Sbjct: 22 ECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQGSGPSSG 63
>pdb|1TSP|A Chain A, Crystal Structure Of P22 Tailspike Protein: Interdigitated
Subunits In A Thermostable Trimer
pdb|3TH0|A Chain A, P22 Tailspike Complexed With S.Paratyphi O Antigen
Octasaccharide
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|1QA3|A Chain A, Tailspike Protein, Mutant A334i
Length = 554
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 217
>pdb|2VFQ|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V450a
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|2VFP|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V349l
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|2VFO|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125l
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|2VFN|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125a
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
>pdb|1TYU|A Chain A, Structure Of Tailspike-Protein
pdb|1TYV|A Chain A, Structure Of Tailspike-Protein
pdb|1TYW|A Chain A, Structure Of Tailspike-Protein
pdb|1TYX|A Chain A, Title Of Tailspike-Protein
Length = 554
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 176 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 217
>pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a
Length = 559
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANG 63
+FC + + S D + + + L G+WGK VI GR + G
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYG 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,899,414
Number of Sequences: 62578
Number of extensions: 203757
Number of successful extensions: 566
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 42
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)