Query 031834
Match_columns 152
No_of_seqs 122 out of 797
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.5E-43 3.3E-48 262.1 18.8 148 3-151 2-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 7.7E-37 1.7E-41 225.1 20.0 143 5-151 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.2E-16 2.7E-21 113.3 16.7 134 6-148 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 2.8E-14 6.2E-19 101.1 19.7 108 4-122 1-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 6.2E-14 1.3E-18 101.0 15.6 109 7-124 1-116 (144)
6 cd07819 SRPBCC_2 Ligand-bindin 99.6 8E-13 1.7E-17 94.0 18.2 113 6-125 3-115 (140)
7 cd08865 SRPBCC_10 Ligand-bindi 99.6 5.7E-13 1.2E-17 94.2 16.1 107 7-122 1-108 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.4 1E-11 2.2E-16 89.1 14.9 111 7-125 1-113 (142)
9 cd07813 COQ10p_like Coenzyme Q 99.4 4.9E-12 1.1E-16 90.8 12.7 107 8-125 2-110 (138)
10 cd07812 SRPBCC START/RHO_alpha 99.4 5.1E-11 1.1E-15 82.1 15.3 112 8-126 2-114 (141)
11 cd07820 SRPBCC_3 Ligand-bindin 99.3 5.7E-11 1.2E-15 85.5 13.9 109 7-123 1-112 (137)
12 cd08860 TcmN_ARO-CYC_like N-te 99.3 1.3E-10 2.8E-15 85.4 15.4 113 6-126 2-116 (146)
13 cd08862 SRPBCC_Smu440-like Lig 99.3 2.9E-10 6.4E-15 80.6 16.2 106 6-123 2-108 (138)
14 cd07824 SRPBCC_6 Ligand-bindin 99.3 5.2E-10 1.1E-14 81.3 16.5 108 7-124 3-113 (146)
15 cd07822 SRPBCC_4 Ligand-bindin 99.3 6.9E-10 1.5E-14 78.5 16.4 107 7-122 2-111 (141)
16 cd07814 SRPBCC_CalC_Aha1-like 99.3 3.3E-10 7.2E-15 80.3 14.3 110 7-124 2-112 (139)
17 cd07818 SRPBCC_1 Ligand-bindin 99.3 6.1E-10 1.3E-14 80.6 15.4 114 5-125 2-119 (150)
18 cd05018 CoxG Carbon monoxide d 99.2 5.4E-10 1.2E-14 79.7 13.7 112 6-125 2-115 (144)
19 cd07825 SRPBCC_7 Ligand-bindin 99.2 1.1E-09 2.5E-14 78.6 15.0 135 7-148 2-143 (144)
20 cd07817 SRPBCC_8 Ligand-bindin 99.2 1.9E-09 4.2E-14 76.5 13.9 107 6-125 1-108 (139)
21 PF03364 Polyketide_cyc: Polyk 99.2 2.7E-09 5.8E-14 75.4 14.5 109 13-133 1-113 (130)
22 PRK10724 hypothetical protein; 99.1 1.6E-09 3.5E-14 80.7 13.2 110 5-125 15-126 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.1 8.5E-09 1.8E-13 74.9 14.0 112 8-126 2-117 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.7 8.8E-07 1.9E-11 63.3 13.6 134 6-148 2-143 (145)
25 COG5637 Predicted integral mem 98.7 4.7E-07 1E-11 68.4 12.1 111 1-125 66-179 (217)
26 COG3427 Carbon monoxide dehydr 98.7 5.4E-07 1.2E-11 66.2 11.5 112 7-125 3-115 (146)
27 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 5E-06 1.1E-10 60.0 16.4 135 7-148 2-141 (143)
28 cd08893 SRPBCC_CalC_Aha1-like_ 98.7 1.8E-06 3.8E-11 61.0 13.4 132 6-148 1-134 (136)
29 cd08895 SRPBCC_CalC_Aha1-like_ 98.6 4.8E-06 1E-10 60.4 15.9 132 6-148 1-144 (146)
30 cd08899 SRPBCC_CalC_Aha1-like_ 98.6 1.5E-06 3.3E-11 64.0 12.8 125 5-148 11-135 (157)
31 cd07826 SRPBCC_CalC_Aha1-like_ 98.6 2.4E-06 5.2E-11 61.9 12.4 137 7-149 2-141 (142)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.5 3.8E-06 8.2E-11 60.9 12.6 133 7-149 2-145 (146)
33 cd08897 SRPBCC_CalC_Aha1-like_ 98.5 1.4E-05 3E-10 57.0 14.2 127 6-149 1-132 (133)
34 cd08894 SRPBCC_CalC_Aha1-like_ 98.5 8E-06 1.7E-10 58.7 12.6 132 7-148 2-137 (139)
35 PF06240 COXG: Carbon monoxide 98.4 3.5E-05 7.6E-10 55.8 14.0 108 10-125 2-111 (140)
36 COG2867 Oligoketide cyclase/li 98.3 5.4E-06 1.2E-10 60.7 9.1 111 5-125 2-114 (146)
37 cd08891 SRPBCC_CalC Ligand-bin 98.1 0.00015 3.3E-09 52.6 12.9 130 7-148 2-147 (149)
38 cd08876 START_1 Uncharacterize 98.0 0.0011 2.3E-08 50.1 16.7 117 5-125 41-169 (195)
39 cd08892 SRPBCC_Aha1 Putative h 98.0 0.00036 7.7E-09 49.5 13.3 100 7-122 2-101 (126)
40 COG3832 Uncharacterized conser 98.0 0.00035 7.5E-09 51.3 13.0 138 2-149 5-148 (149)
41 PF08327 AHSA1: Activator of H 97.9 0.0004 8.6E-09 48.1 11.0 121 14-148 1-123 (124)
42 cd08901 SRPBCC_CalC_Aha1-like_ 97.8 0.00049 1.1E-08 49.3 11.2 97 7-120 2-100 (136)
43 cd08863 SRPBCC_DUF1857 DUF1857 97.3 0.027 5.8E-07 41.3 14.1 118 8-143 3-130 (141)
44 PTZ00220 Activator of HSP-90 A 97.1 0.012 2.6E-07 42.1 10.2 119 13-148 1-126 (132)
45 PF08982 DUF1857: Domain of un 97.0 0.041 8.8E-07 40.7 13.1 70 7-85 2-79 (149)
46 COG4276 Uncharacterized conser 96.6 0.11 2.4E-06 37.9 12.2 115 4-126 1-121 (153)
47 cd08874 START_STARD9-like C-te 95.8 0.66 1.4E-05 35.9 15.9 118 7-129 47-182 (205)
48 cd08873 START_STARD14_15-like 95.5 1 2.2E-05 35.8 16.8 142 6-151 78-235 (235)
49 PF10698 DUF2505: Protein of u 95.4 0.65 1.4E-05 34.2 11.8 110 7-125 1-130 (159)
50 cd08905 START_STARD1-like Chol 94.4 1.8 3.8E-05 33.4 13.1 117 7-125 51-181 (209)
51 cd08913 START_STARD14-like Lip 93.5 3.1 6.8E-05 33.0 14.9 113 6-122 82-209 (240)
52 cd08877 START_2 Uncharacterize 92.1 4.3 9.4E-05 31.1 14.2 137 5-146 46-210 (215)
53 cd08906 START_STARD3-like Chol 90.5 6.7 0.00015 30.2 15.2 118 6-125 50-181 (209)
54 cd00177 START Lipid-binding ST 88.1 8.3 0.00018 28.0 16.3 115 6-125 40-167 (193)
55 cd08868 START_STARD1_3_like Ch 87.3 11 0.00024 28.7 15.7 139 7-148 50-205 (208)
56 cd08903 START_STARD5-like Lipi 83.1 19 0.00041 27.6 13.8 115 7-125 48-180 (208)
57 cd08914 START_STARD15-like Lip 82.2 23 0.00051 28.1 14.0 113 5-122 78-205 (236)
58 cd08872 START_STARD11-like Cer 79.9 27 0.00059 27.4 12.4 140 6-151 53-227 (235)
59 cd08911 START_STARD7-like Lipi 77.2 30 0.00065 26.4 15.5 114 7-123 47-177 (207)
60 KOG3177 Oligoketide cyclase/li 77.0 18 0.00039 28.4 7.4 105 11-124 74-182 (227)
61 cd08871 START_STARD10-like Lip 74.7 36 0.00078 26.1 15.2 115 7-125 49-175 (222)
62 cd08869 START_RhoGAP C-termina 73.5 37 0.0008 25.7 14.8 113 7-125 46-170 (197)
63 cd08870 START_STARD2_7-like Li 63.9 62 0.0014 24.6 16.3 116 6-125 51-181 (209)
64 PF11687 DUF3284: Domain of un 52.2 79 0.0017 22.1 11.2 100 9-124 3-104 (120)
65 cd08867 START_STARD4_5_6-like 44.9 1.3E+02 0.0029 22.6 15.4 41 6-47 47-88 (206)
66 cd00222 CollagenBindB Collagen 41.7 58 0.0013 24.9 4.5 72 14-94 4-76 (187)
67 smart00234 START in StAR and p 41.1 1.5E+02 0.0032 22.0 17.7 117 6-125 46-175 (206)
68 PF02087 Nitrophorin: Nitropho 40.7 1.6E+02 0.0035 22.4 6.7 26 68-93 49-74 (178)
69 TIGR02777 LigD_PE_dom DNA liga 40.4 47 0.001 24.8 3.7 59 53-124 50-110 (156)
70 cd08910 START_STARD2-like Lipi 37.4 1.8E+02 0.004 22.1 12.6 113 6-125 50-179 (207)
71 COG5435 Uncharacterized conser 33.9 1.9E+02 0.004 21.4 5.9 66 84-149 3-70 (147)
72 PF08868 YugN: YugN-like famil 31.8 37 0.0008 24.6 2.0 28 121-148 104-131 (132)
73 PF07474 G2F: G2F domain; Int 29.4 1.2E+02 0.0026 23.3 4.5 35 58-93 94-128 (192)
74 PF11485 DUF3211: Protein of u 27.3 2.5E+02 0.0054 20.4 11.0 99 6-122 2-102 (136)
75 COG4933 Uncharacterized conser 27.2 73 0.0016 22.8 2.7 25 1-25 43-67 (124)
76 PF11979 DUF3480: Domain of un 24.6 3.2E+02 0.0068 23.2 6.5 61 88-148 239-307 (356)
77 KOG0301 Phospholipase A2-activ 22.7 4.4E+02 0.0094 24.5 7.3 69 11-87 153-227 (745)
78 PF07615 Ykof: YKOF-related Fa 21.3 1.5E+02 0.0031 19.3 3.2 41 7-47 37-77 (81)
79 PF07107 WI12: Wound-induced p 20.5 1.4E+02 0.003 21.0 3.1 41 30-72 16-58 (109)
80 cd08908 START_STARD12-like C-t 20.4 4.1E+02 0.0088 20.5 13.9 115 5-125 52-177 (204)
81 KOG3294 WW domain binding prot 20.3 2.9E+02 0.0063 22.3 5.2 41 97-145 92-133 (261)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.5e-43 Score=262.12 Aligned_cols=148 Identities=36% Similarity=0.600 Sum_probs=136.5
Q ss_pred cceeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCC
Q 031834 3 LTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 3 ~~~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~ 81 (152)
+.++++.|+++++||+|+|+++++..+.+|+++|+.|+|++++||||+..||||.|+|. +|+.. ++|||++++|+++|
T Consensus 2 ~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~-~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 2 GVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFK-YVKEKVEAIDEENK 80 (151)
T ss_dssp CEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEE-EEEEEEEEEETTTT
T ss_pred CcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcc-eeEEEEEeecCCCc
Confidence 67899999999999999999999755669999999999999999998555699999999 78777 99999999999999
Q ss_pred eEEEEEEeCccccceeeEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhccC
Q 031834 82 KITFKVIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 151 (152)
Q Consensus 82 ~~~y~i~eG~~~~~~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll~~ 151 (152)
+++|+++||+++..|++|..+++++|+++ ||+++|+++||+.+++.++|+++++++..++|+||+|||+|
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888999999999999855 69999999999999998899999999999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=7.7e-37 Score=225.13 Aligned_cols=143 Identities=31% Similarity=0.469 Sum_probs=129.6
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccc-ccc-ccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCC
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLH-HVS-SACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~-~lp-~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~ 81 (152)
++++.+++|+|||++||++++ +|. .+| .|+| .|++|++++|+| ++||||.|+|. +++.. ++||||+++|+++|
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~-~~GsvR~~~~~~~~~~~-~~kE~l~~~D~~~~ 76 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDG-GPGSIKLITFGPGGKVK-YVKERIDAVDEENK 76 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCC-CCceEEEEEEcCCCcce-EEEEEEEEEccccc
Confidence 578999999999999999998 666 454 5677 899999999994 99999999998 55556 89999999999999
Q ss_pred eEEEEEEeCccc-cceeeEEEEEEEEecC-CCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhccC
Q 031834 82 KITFKVIEGNLL-DQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 151 (152)
Q Consensus 82 ~~~y~i~eG~~~-~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll~~ 151 (152)
+++|++++|+++ .+|++|+++++|.|.+ ++|+++|+++|++.++++++|+++++++..+++++++|++.+
T Consensus 77 ~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 77 TYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999997 4899999999999994 589999999999999999999999999999999999999753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.76 E-value=1.2e-16 Score=113.34 Aligned_cols=134 Identities=24% Similarity=0.417 Sum_probs=107.9
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
.++.+++|++|+++||+++. |+.++++|+|. +++++++++.+ ++|+++.+.+.+| . .+++++..+|+.++++.|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~g--~-~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGGLHKWHPA-VASCELEGGGP-GVGAVRTVTLKDG--G-TVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCchhhhccC-cceEEeecCCC-CCCeEEEEEeCCC--C-EEEEEehhcCccCCEEEE
Confidence 57889999999999999997 89999999995 88999877654 6899999988755 4 789999999988889999
Q ss_pred EEEeCccccceeeEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCCh---HHHHHHHHHHHHHHHhhh
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEP---AAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~~~~~p---~~~~~~~~~~~k~ie~yl 148 (152)
++.+|+.+ +.++.+++++.|.++ +|.++|+.+|++... .+.+ ....+.....++.|.++|
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPLP--VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCCC--cccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988543 567789999999865 899999999999876 2222 122445566666676665
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.68 E-value=2.8e-14 Score=101.13 Aligned_cols=108 Identities=28% Similarity=0.467 Sum_probs=88.1
Q ss_pred ceeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeE
Q 031834 4 TGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 4 ~~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~ 83 (152)
+.+++.++.|++|+++||+++. |+.++++|+|+ +.++++.+++ ++|..+.+... |. . .+++++..+|++.+.+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~-d~~~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~~-g~-~-~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLS-DPENWPRWWPG-VKSVELLSGG--GPGTERTVRVA-GR-G-TVREEITEYDPEPRRI 73 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHT-TTTGGGGTSTT-EEEEEEEEEC--STEEEEEEEEC-SC-S-EEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHh-Chhhhhhhhhc-eEEEEEcccc--ccceeEEEEec-cc-c-ceeEEEEEecCCCcEE
Confidence 4688999999999999999997 89999999995 9999987633 34555555544 33 3 7999999999889999
Q ss_pred EEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEc
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 122 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~ 122 (152)
.|.+. . .++..+..++++.|.++||.++|+.+|+.
T Consensus 74 ~~~~~-~---~~~~~~~~~~~~~~~~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-P---SGFTNGTGRWRFEPVGDGTRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-S---SSSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred EEEEE-e---cceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence 99996 2 22466788999999988899999999997
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.61 E-value=6.2e-14 Score=100.95 Aligned_cols=109 Identities=19% Similarity=0.334 Sum_probs=82.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCC-----CcEEEEEeeCCceeeEEEEEEEEEeCCCC
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKA-----GSVIFGRYANGKSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~-----Gsvr~~~~~~g~~~~~~kErl~~~D~~~~ 81 (152)
|..++.|++|+++||+++. |+.++|+|+|+ +++++++++.++.. |..+.+... -.. .+..++.+.++.++
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~~~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~~~~~ 75 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDNLAEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFK--FEA-RVVLELREREEFPR 75 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-ChhhHHhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeee--eeE-EEEEEEEEecCCCc
Confidence 4678999999999999997 89999999995 99999987643111 111111111 112 44566677777789
Q ss_pred eEEEEEEeCccccceeeEEEEEEEEecCC--CeEEEEEEEEEcCC
Q 031834 82 KITFKVIEGNLLDQYKSFCCFFQVTPKGE--GSFVTWTLKYEKPN 124 (152)
Q Consensus 82 ~~~y~i~eG~~~~~~~~~~~~i~v~p~~~--gs~v~W~~~ye~~~ 124 (152)
++.|++++|+ ++.|.+++++.|.++ +|.++|+++|++..
T Consensus 76 ~i~~~~~~g~----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~ 116 (144)
T cd08866 76 ELDFEMVEGD----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDF 116 (144)
T ss_pred eEEEEEcCCc----hhceEEEEEEEECCCCCeEEEEEEEEEEeCC
Confidence 9999999886 367899999999854 79999999999875
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.57 E-value=8e-13 Score=94.04 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=82.1
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
+++.++.|+||+++||+++. |+.++|+|+|. +.+++++++++++.+....+++..+.......-+++ .++ .++++|
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~-D~~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~ 78 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLA-DVEAYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVSW 78 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHh-ChhhhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEEE
Confidence 68899999999999999997 89999999995 999998765322333334444442211101122222 223 678999
Q ss_pred EEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~ 125 (152)
+..+|.. ..++..++++.|.++||.|+|+.+|+....
T Consensus 79 ~~~~~~~---~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~ 115 (140)
T cd07819 79 TLVEGEG---NRSQEGSYTLTPKGDGTRVTFDLTVELTVP 115 (140)
T ss_pred EEecccc---eeEEEEEEEEEECCCCEEEEEEEEEEecCC
Confidence 9998863 466788999999988999999999998663
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.56 E-value=5.7e-13 Score=94.18 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=86.7
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
++.++.|++|+++||+++. |+.++|+|.|. +.+++.+.+...++|+...+... .|... .++++++.+| .++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~-~~~~~v~~~~-p~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFENAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRI-ELTYEITEYE-PGRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-CccchhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceE-EEEEEEEEec-CCcEEEE
Confidence 4678999999999999997 89999999996 77888775443478999888765 44333 5789999887 5688999
Q ss_pred EEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEc
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 122 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~ 122 (152)
...+|++ .+..++++.|.++||.++|+.+|+.
T Consensus 77 ~~~~~~~-----~~~~~~~~~~~~~~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSGPF-----PYEDTYTFEPVGGGTRVRYTAELEP 108 (140)
T ss_pred EecCCCc-----ceEEEEEEEEcCCceEEEEEEEEcc
Confidence 9876643 2467899999888999999999997
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.44 E-value=1e-11 Score=89.08 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=82.3
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
++.++.|++|+++||+++. |+.++|+|+|. .+++.+++++ ....++.+... +|... .. +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~~p~~~p~--~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAERWPEFLPT--VHVERLELDG-GVERLRMWATAFDGSVH-TW-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHhhhccCCC--ceEEEEEEcC-CEEEEEEEEEcCCCcEE-EE-EEEEEEcCCCCEEEE
Confidence 4689999999999999997 89999999995 4555555432 11245555554 44322 23 444567888999999
Q ss_pred EEEeCccccceeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
..++++.+ +..+.+++++.|.+ ++|.|+|+.+|+....
T Consensus 75 ~~~~~~~~--~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 75 RQEEPPPP--VASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEeeCCCC--hhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 99985332 56778899999997 6899999999998754
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.43 E-value=4.9e-12 Score=90.82 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=84.1
Q ss_pred EEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEEE
Q 031834 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITFK 86 (152)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~ 86 (152)
+.++.|++|++.||+++. |..++|+|+|+ +++++++++++ .+....++.. .|... .+..++. +++ .+++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~-D~~~~~~~~p~-~~~~~vl~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVA-DVERYPEFLPW-CTASRVLERDE--DELEAELTVGFGGIRE-SFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred eEEEEcCCCHHHHHHHHH-HHHhhhhhcCC-ccccEEEEcCC--CEEEEEEEEeeccccE-EEEEEEE-ecC-CCEEEEE
Confidence 578999999999999997 89999999995 99999998654 3344445555 44323 4556655 665 7789999
Q ss_pred EEeCccccceeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 87 VIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 87 i~eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
.++|+ ++.+.+++++.|.+ ++|.|+|.++|++.+.
T Consensus 75 ~~~g~----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~ 110 (138)
T cd07813 75 LVDGP----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR 110 (138)
T ss_pred ecCCC----hhhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence 99885 46678999999986 6899999999999753
No 10
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=5.1e-11 Score=82.12 Aligned_cols=112 Identities=25% Similarity=0.388 Sum_probs=88.7
Q ss_pred EEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEEEE
Q 031834 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKV 87 (152)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 87 (152)
+.++.|++|+++||+++. |+.++++|.|+ +.++++.++.+...|....+.+..+... ....++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPERWPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGRRL-TLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-ChhhhhhhCcc-cceEEEcCCCCccceeEEEEEecCCccc-cceEEEEEecC-CCceEEEE
Confidence 578899999999999997 89999999996 8888887654446666666665422223 57788888777 77899999
Q ss_pred EeCccccceeeEEEEEEEEecCC-CeEEEEEEEEEcCCCC
Q 031834 88 IEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNEN 126 (152)
Q Consensus 88 ~eG~~~~~~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~~ 126 (152)
..++.. ..+..++++.+.++ +|.++|+.+|+.....
T Consensus 78 ~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 78 TGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred ecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 987753 46678999999977 8999999999987654
No 11
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.34 E-value=5.7e-11 Score=85.51 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=85.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCC-c-CCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE-W-GKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGd-g-~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~ 83 (152)
++.++.|++|+++||+.+. |..++|+|+|+ +.++++++.+ + ..+|+.-.+.+. .|... .++-+++.++ .++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~-p~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDNLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVE-PPRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-CcchHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEc-CCCeE
Confidence 3688999999999999997 89999999996 8899987432 2 256788888777 44223 5677777665 46679
Q ss_pred EEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcC
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKP 123 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~ 123 (152)
++..+.|++ ..+..+..+.|.++||.++++++|+..
T Consensus 77 ~~~~~~G~~----~~w~h~~~f~~~~~gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGPF----RSWRHTHRFEAIGGGTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCCc----hhCEEEEEEEECCCceEEEEEEEEeCC
Confidence 999888753 556778889998779999999999984
No 12
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.33 E-value=1.3e-10 Score=85.43 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=83.3
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKIT 84 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 84 (152)
..+.+++|++||+.||+++. |..+.|.|+|. ++++++++.++.+.|.--.+.+. +|... .+.-+. ..|...+++.
T Consensus 2 ~~~~si~i~a~~~~v~~lva-Dv~~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~-~w~s~~-~~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTN-DIATWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVW-SWVSER-TLDPVNRTVR 77 (146)
T ss_pred cceeEEEEcCCHHHHHHHHH-hhhhhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEE-EEEEEE-EecCCCcEEE
Confidence 46789999999999999997 89999999995 88999987654455532222333 45333 343332 3788888888
Q ss_pred EE-EEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCC
Q 031834 85 FK-VIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN 126 (152)
Q Consensus 85 y~-i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~ 126 (152)
+. ..+|+ +.....+++|+|.++||.|++..+|+-.++.
T Consensus 78 ~~~~~~~p----~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 78 ARRVETGP----FAYMNIRWEYTEVPEGTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEecCCC----cceeeeeEEEEECCCCEEEEEEEEEEECCCC
Confidence 74 33332 6778899999999778999999999976543
No 13
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.32 E-value=2.9e-10 Score=80.64 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=79.8
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
+++.++.|+||+++||+++. |+.++|+|+|+ ++++++..+.+ ++|+...++..++ . .+..++.++++. +++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~~~~w~~~-~~~~~~~~~~~-~~G~~~~~~~~~~--~-~~~~~i~~~~p~-~~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVENWPAWTPS-VETVRLEGPPP-AVGSSFKMKPPGL--V-RSTFTVTELRPG-HSFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhhcccccCc-ceEEEEecCCC-CCCcEEEEecCCC--C-ceEEEEEEecCC-CEEEE
Confidence 57899999999999999997 89999999995 88999875532 6677665554432 3 567788888754 56888
Q ss_pred EEEeCccccceeeEEEEEEEEecC-CCeEEEEEEEEEcC
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKP 123 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~ 123 (152)
..... ...+..++++.|.+ ++|.++|+.+|...
T Consensus 75 ~~~~~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 75 TGPAP-----GISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EecCC-----CEEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 75432 12345788999986 68999999988753
No 14
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=5.2e-10 Score=81.31 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEe-CCcCCCCcEEEEEee--CCceeeEEEEEEEEEeCCCCeE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLE-GEWGKAGSVIFGRYA--NGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~e-Gdg~~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~~~ 83 (152)
++.+..|++|+++||+++. |+.++|+|+|+ +.++++++ |++.++|+.-+.+.. .|... .+.-++..+ +..+++
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~~-~p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAESWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRL-RFELRVTRI-EPLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhhcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEE-EEEEEEEee-cCCcEE
Confidence 4677889999999999997 89999999995 89999887 343467777554433 23222 355555554 557788
Q ss_pred EEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCC
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 124 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~ 124 (152)
+|.. +|++. ...++++.|.++||.|+++.+++..+
T Consensus 79 ~~~~-~g~~~-----~~~~~~~~~~~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDLE-----GVGRWTLAPDGSGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEeee-----EEEEEEEEEcCCCEEEEEEEEEEcCH
Confidence 8885 66542 15788999988899999999999865
No 15
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=6.9e-10 Score=78.47 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=81.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C-CceeeEEEEEEEEEeCCCCeEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N-GKSDLSCKVIMEEIDYENNKIT 84 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~-g~~~~~~kErl~~~D~~~~~~~ 84 (152)
++.++.|++|+++||+++. |+.++|+|+|. +..++... ..+|+...+.+. + +... ...+++.++|+ .+++.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~-d~~~~~~w~~~-~~~~~~~~---~~~G~~~~~~~~~~~~~~~-~~~~~v~~~~p-~~~~~ 74 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLT-DFPSYPEWNPF-VRSATGLS---LALGARLRFVVKLPGGPPR-SFKPRVTEVEP-PRRLA 74 (141)
T ss_pred eEEEEEecCCHHHHHHHHh-ccccccccChh-heeEeccc---cCCCCEEEEEEeCCCCCcE-EEEEEEEEEcC-CCEeE
Confidence 6889999999999999997 89999999995 66665421 256788777775 2 3334 67888898876 57899
Q ss_pred EEEEeCccccceeeEEEEEEEEec-CCCeEEEEEEEEEc
Q 031834 85 FKVIEGNLLDQYKSFCCFFQVTPK-GEGSFVTWTLKYEK 122 (152)
Q Consensus 85 y~i~eG~~~~~~~~~~~~i~v~p~-~~gs~v~W~~~ye~ 122 (152)
|+...++.. .-....++++.|. +++|+++|+..|..
T Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 75 WRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred EEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 998776542 1234578899998 57899999988764
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.27 E-value=3.3e-10 Score=80.35 Aligned_cols=110 Identities=12% Similarity=0.044 Sum_probs=80.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
++.++.|+||+++||+++. |+.++|+|+|. +..++.....| |+.+..... +|... .+..++..+|+. +.+.|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~~~~w~~~-~~~~~~~~~~G---g~~~~~~~~~~g~~~-~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPELLAQWFGP-TTTAEMDLRVG---GRWFFFMTGPDGEEG-WVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHHHHhhhCc-CCceEEcccCC---ceEEEEEECCCCCEE-eccEEEEEEcCC-CeEEE
Confidence 6789999999999999997 89999999995 32222211122 676655443 34334 678899988855 78999
Q ss_pred EEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCC
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 124 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~ 124 (152)
+...++.+ ..-....++++.|.+++|.++|+.+|....
T Consensus 75 ~~~~~~~~-~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~ 112 (139)
T cd07814 75 TWAFSDET-PGPETTVTVTLEETGGGTRLTLTHSGFPEE 112 (139)
T ss_pred EecccCCC-CCCceEEEEEEEECCCCEEEEEEEEccChH
Confidence 99877531 112346788899988889999999998864
No 17
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=6.1e-10 Score=80.61 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=82.1
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEE---EEEe-CCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCC
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSV---DLLE-GEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYEN 80 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~---~~~e-Gdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~ 80 (152)
-+++.++.|++|+++||+++. |+.++|+|+|. ...+ +... +...++|+...++..++ .. ....++..++ .+
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~-D~~~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~-~~~~~v~~~~-p~ 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVN-DLKNWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDK-VG-EGEMEITESV-PN 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHh-CcccCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCc-cc-ceEEEEEecC-CC
Confidence 368899999999999999997 89999999994 4432 2211 22236788877765542 12 3445666665 46
Q ss_pred CeEEEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031834 81 NKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 81 ~~~~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~ 125 (152)
+++.|....++.+. ..+..++++.|.++||.++|+.+|+....
T Consensus 77 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 77 ERIEYELRFIKPFE--ATNDVEFTLEPVGGGTKVTWGMSGELPFP 119 (150)
T ss_pred cEEEEEEEecCCcc--ccceEEEEEEEcCCceEEEEEEEecCCch
Confidence 78999998643321 25578999999988999999999997654
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.23 E-value=5.4e-10 Score=79.70 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=76.3
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCcee-eEEEEEEEEEeCCCCeE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSD-LSCKVIMEEIDYENNKI 83 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~-~~~kErl~~~D~~~~~~ 83 (152)
+++.++.|++|+++||+++. |+.++++|+|+ +++++.++++. .. + .+++. ++... ....-++..+|+ .+++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~~~~w~p~-~~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEVLARCIPG-CESLEKIGPNE--YE-A-TVKLKVGPVKGTFKGKVELSDLDP-PESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHHHHhhccc-hhhccccCCCe--EE-E-EEEEEEccEEEEEEEEEEEEecCC-CcEE
Confidence 46789999999999999997 89999999996 88888765321 11 1 11222 22111 023455555444 3677
Q ss_pred EEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~ 125 (152)
.++....+. .....+..++++.|.++||.++|+++|+..+.
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 75 TITGEGKGG-AGFVKGTARVTLEPDGGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEcCC-CceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence 777654322 12457789999999977899999999997754
No 19
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=1.1e-09 Score=78.58 Aligned_cols=135 Identities=16% Similarity=0.083 Sum_probs=90.7
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCc-CCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEW-GKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKIT 84 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg-~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~ 84 (152)
++.++.|+||+++||+++. |+.++|+|.|... ......++. -.+|+...+... .|... .+..++..+++ +++++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~~-~~~~~v~~~~p-~~~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRRHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGPY-RITNHVVAFEE-NRLIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-CccccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCce-EEEEEEEEECC-CCEEE
Confidence 6789999999999999997 8999999998522 222223432 378888887766 33334 56677787765 55688
Q ss_pred EEEE-eCccccceeeEEEEEEEEecC-CCeEEEEEEEEEcCCCC-CC--ChHHHHHHHHHHHHHHHhhh
Q 031834 85 FKVI-EGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN-VP--EPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 85 y~i~-eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~~-~~--~p~~~~~~~~~~~k~ie~yl 148 (152)
|+.. .+..+ .....++++.|.+ ++|+++++.+|...+.. .. ............+..|++|+
T Consensus 78 ~~~~~~~~~~---~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQEP---GGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCCCC---CceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 8854 22221 2235678888986 57999999998866441 11 12233555667777777775
No 20
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.17 E-value=1.9e-09 Score=76.47 Aligned_cols=107 Identities=22% Similarity=0.349 Sum_probs=78.5
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
.++.++.|++|+++||+++. |+.++|+|.|. +.+++++.|. +.-..+.+..|... .+..++..+ +.++.+.|
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~~~~w~~~-~~~~~~~~~~----~~~~~~~~~~g~~~-~~~~~v~~~-~~~~~i~~ 72 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFENLPRFMSH-VESVEQLDDT----RSHWKAKGPAGLSV-EWDAEITEQ-VPNERIAW 72 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-ChhhhHHHhhh-hcEEEEcCCC----ceEEEEecCCCCcE-EEEEEEecc-CCCCEEEE
Confidence 36889999999999999997 89999999995 8899886441 22222233335434 566776654 44556999
Q ss_pred EEEeCccccceeeEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 125 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~ 125 (152)
....|.. .+..++.+.|.++ +|.++++..|++...
T Consensus 73 ~~~~~~~-----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 73 RSVEGAD-----PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EECCCCC-----CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 8876642 3467888999755 899999999998753
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.16 E-value=2.7e-09 Score=75.44 Aligned_cols=109 Identities=25% Similarity=0.328 Sum_probs=78.3
Q ss_pred EcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEEEEEeCc
Q 031834 13 IKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITFKVIEGN 91 (152)
Q Consensus 13 i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~i~eG~ 91 (152)
|+||+++||+++. |..++|+|+|. ++++++++.+++ +..-.+... .+... .+..++. .+...+ +.+..++|+
T Consensus 1 V~ap~~~V~~~i~-D~e~~~~~~p~-~~~v~vl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~g~ 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYENYPRFFPP-VKEVRVLERDGD--GMRARWEVKFGGIKR-SWTSRVT-EDPPER-IRFEQISGP 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGGHHHHCTT-EEEEEEEEEECC--EEEEEEEECTTTTCE-EEEEEEE-EECTTT-EEEESSETT
T ss_pred CCCCHHHHHHHHH-HHHHHHHhCCC-CceEEEEEeCCC--eEEEEEEEecCCEEE-EEEEEEE-EEEeee-eeeeecCCC
Confidence 6899999999997 89999999995 999999976542 222245555 33334 5677755 444444 888888886
Q ss_pred cccceeeEEEEEEEEecCC---CeEEEEEEEEEcCCCCCCChHHH
Q 031834 92 LLDQYKSFCCFFQVTPKGE---GSFVTWTLKYEKPNENVPEPAAM 133 (152)
Q Consensus 92 ~~~~~~~~~~~i~v~p~~~---gs~v~W~~~ye~~~~~~~~p~~~ 133 (152)
++++..++++.|.++ ||.++++.+|+..... +.|..+
T Consensus 74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~ 113 (130)
T PF03364_consen 74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFL 113 (130)
T ss_dssp ----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHH
T ss_pred ----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHH
Confidence 588999999999986 7878888887763332 445555
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.15 E-value=1.6e-09 Score=80.71 Aligned_cols=110 Identities=16% Similarity=0.240 Sum_probs=84.5
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeE
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~ 83 (152)
..+..++.|++|++++|+++. |..++|+|+|. .+++++++-+++ +.+..++.+ +|-.. .+..|.. +++ .+++
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~-Dve~yp~flp~-~~~s~vl~~~~~--~~~a~l~v~~~g~~~-~f~srv~-~~~-~~~I 87 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVN-DVQSYPQFLPG-CTGSRVLESTPG--QMTAAVDVSKAGISK-TFTTRNQ-LTS-NQSI 87 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHH-HHHHHHHhCcc-cCeEEEEEecCC--EEEEEEEEeeCCccE-EEEEEEE-ecC-CCEE
Confidence 478899999999999999997 89999999995 888888864331 234445555 55444 5666645 444 4489
Q ss_pred EEEEEeCccccceeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
.+..++|+ ++.+.+.+++.|.+ ++|.|++..+|+....
T Consensus 88 ~~~~~~Gp----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~ 126 (158)
T PRK10724 88 LMQLVDGP----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK 126 (158)
T ss_pred EEEecCCC----hhhccceEEEEECCCCCEEEEEEEEEEEchH
Confidence 99999995 47789999999985 5799999999997543
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.08 E-value=8.5e-09 Score=74.89 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=73.8
Q ss_pred EEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEE--EEEEEEEeCCCCeEE
Q 031834 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSC--KVIMEEIDYENNKIT 84 (152)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~--kErl~~~D~~~~~~~ 84 (152)
+.+++|++|++++|+++. |+.+++.|+|+ +++++.+ |++ ...-.++.. ++... .+ +=++..++++.+++.
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~~~~~~pg-~~~~~~~-~~~---~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIERVAPCLPG-ASLTEVE-GDD---EYKGTVKVKLGPISA-SFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHHHHhcCCC-ceecccc-CCC---eEEEEEEEEEccEEE-EEEEEEEEEeccCCCcEEE
Confidence 568899999999999997 89999999996 8888764 321 122223333 22111 22 224555555788888
Q ss_pred EEEEeCccc-cceeeEEEEEEEEecCCCeEEEEEEEEEcCCCC
Q 031834 85 FKVIEGNLL-DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN 126 (152)
Q Consensus 85 y~i~eG~~~-~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~ 126 (152)
+..-..+.. ..--....++++.|.++||.++|+++++..+..
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l 117 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKL 117 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEh
Confidence 875541111 111145678888887778999999999876653
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.72 E-value=8.8e-07 Score=63.29 Aligned_cols=134 Identities=15% Similarity=0.105 Sum_probs=78.6
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
.++.++.|+||+++||+++. ++..+++|.|... ....-|.+ ..| .+.+.++... ...-++..+ +..+++.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~~~~W~~~~~--~~~~~~~~-~~g---~~~~~~~~~~-~~~~~i~~~-~p~~~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEHFGQWFGVKL--GPFVVGEG-ATG---EITYPGYEHG-VFPVTVVEV-DPPRRFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-ChhhhhhcccccC--CCcccCCc-cee---EEecCCCCcc-ceEEEEEEe-CCCcEEEE
Confidence 57899999999999999997 8999999999532 11111211 112 2334332112 345566666 45666777
Q ss_pred EEEeCc----cc-cceeeEEEEEEEEecCCCeEEEEEEE-EEcCCCCCC--ChHHHHHHHHHHHHHHHhhh
Q 031834 86 KVIEGN----LL-DQYKSFCCFFQVTPKGEGSFVTWTLK-YEKPNENVP--EPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 86 ~i~eG~----~~-~~~~~~~~~i~v~p~~~gs~v~W~~~-ye~~~~~~~--~p~~~~~~~~~~~k~ie~yl 148 (152)
+...+. .. ..-.....++++.|.++||.++++.. |...+++.. ......+.-..++..|++||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~l 143 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYV 143 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 754332 11 11122457889999888999999876 433221110 11122344466677777776
No 25
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.70 E-value=4.7e-07 Score=68.45 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCcceeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee--CCceeeEEEEEEEEEeC
Q 031834 1 MSLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA--NGKSDLSCKVIMEEIDY 78 (152)
Q Consensus 1 m~~~~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~--~g~~~~~~kErl~~~D~ 78 (152)
|+---.++.+++|+.|++.||+..+ |+.++|.||.+ +.|+++.+-. + -+|+.. .|... .++-+|+ -|.
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~-dLe~lP~~Mkh-l~SVkVlddk---r---SrW~~~ap~g~~v-~Wea~it-~d~ 135 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWR-DLENLPLWMKH-LDSVKVLDDK---R---SRWKANAPLGLEV-EWEAEIT-KDI 135 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHH-hhhhhhHHHHh-hceeeccCCC---c---cceeEcCCCCceE-EEeehhh-ccC
Confidence 4555688999999999999999998 89999999996 9999998642 1 445555 33323 5677766 589
Q ss_pred CCCeEEEEEEeCccccceeeEEEEEEEEec-CCCeEEEEEEEEEcCCC
Q 031834 79 ENNKITFKVIEGNLLDQYKSFCCFFQVTPK-GEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 79 ~~~~~~y~i~eG~~~~~~~~~~~~i~v~p~-~~gs~v~W~~~ye~~~~ 125 (152)
.+.+|.+.-++|.-.++ ++.++|.+. |+.|.|+.++.|.+.+.
T Consensus 136 ~~e~I~W~Sl~Ga~v~N----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 136 PGERIQWESLPGARVEN----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CCcEEeeecCCCCcCCC----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 99999999999954322 467888887 55689999999998765
No 26
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.68 E-value=5.4e-07 Score=66.19 Aligned_cols=112 Identities=23% Similarity=0.315 Sum_probs=79.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCcee-eEEEEEEEEEeCCCCeEEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSD-LSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~-~~~kErl~~~D~~~~~~~y 85 (152)
++-+..|++|+++||+.+. |+..+...+|+ ++|++. +|+. -.+.+| +.. +.-.. -.-+=++..+|+..++++.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~-dpe~~a~ciPG-~qs~e~-~g~e-~~~~v~-l~i-g~l~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLN-DPEQVAACIPG-VQSVET-NGDE-YTAKVK-LKI-GPLKGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred ccceEEecCCHHHHHHHhc-CHHHHHhhcCC-cceeee-cCCe-EEEEEE-Eee-cceeEEEEEEEEEccccCCCcEEEE
Confidence 4567889999999999996 89999999997 999986 4652 111111 122 11111 0234566667889999988
Q ss_pred EEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~ 125 (152)
..-.|.. ...-+.++.+++.|.+++|++.|.++-+-.+.
T Consensus 77 ~g~G~~~-~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg~ 115 (146)
T COG3427 77 NGSGGGA-AGFADGTVDVQLEPSGEGTRVNWFADANVGGK 115 (146)
T ss_pred Eeecccc-cceeeeeeEEEEEEcCCCcEEEEEEEccccHH
Confidence 8876433 34566788999999988899999998776553
No 27
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=5e-06 Score=60.04 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=80.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCc-eeEEEEEeCCcCCCCcEEEEEee--CCceeeEEEEEEEEEeCCCCeE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDK-VQSVDLLEGEWGKAGSVIFGRYA--NGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~-v~s~~~~eGdg~~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~~~ 83 (152)
+..+..++||+++||+++- +...+.+|+... --.+...+.|. .+|..-.+.+. +|... ...-++.++++. +++
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~l~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~-~~~g~~~~~~p~-~~l 77 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAARARWFVPSPDWTVLEDEFDF-RVGGREVSRGGPKGGPEI-TVEARYHDIVPD-ERI 77 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHHHHhcCCCCCCCceeeeEEec-CCCCEEEEEEECCCCCEE-eeeEEEEEecCC-ceE
Confidence 4567789999999999997 788899998531 11122223332 34444333333 55444 556677778654 445
Q ss_pred EEE--EEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 031834 84 TFK--VIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 84 ~y~--i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl 148 (152)
.|+ .-.++.+... ...++.+.|.++||.++.+-.+-...+. .........-..++..|++||
T Consensus 78 ~~t~~~~~~~~~~~~--s~v~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~l 141 (143)
T cd08900 78 VYTYTMHIGGTLLSA--SLATVEFAPEGGGTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAEL 141 (143)
T ss_pred EEEEeeccCCccccc--eEEEEEEEECCCCEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHHH
Confidence 554 3333322222 3468888898888988888765322221 112333455566677777776
No 28
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.65 E-value=1.8e-06 Score=60.96 Aligned_cols=132 Identities=15% Similarity=0.084 Sum_probs=79.0
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
|++.++.|+||+++||+++- |...++.|.+... .+++. .+|.--.+...+.... .+.-++.+++ .+++++|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~~~~-~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEFTRQYWGGTT-----VESDW-KVGSAFEYRRGDDGTV-DVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchhhhheecccc-----cccCC-cCCCeEEEEeCCCccc-ccceEEEEec-CCCeEEE
Confidence 57889999999999999997 8899999998622 13333 4444333333321112 3455666665 6666777
Q ss_pred EEEeCccc--cceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 031834 86 KVIEGNLL--DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 86 ~i~eG~~~--~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl 148 (152)
+...++.+ ..-.....++.+.|.+++|+++.+.+-...+. .--....+....+++.|.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHh
Confidence 76533221 11123466888888877887777765543221 112233444556677777765
No 29
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.64 E-value=4.8e-06 Score=60.37 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=78.8
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCC-ceeEEEEEeCCcCCCCcEEEEEe--eC-------CceeeEEEEEEEE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPD-KVQSVDLLEGEWGKAGSVIFGRY--AN-------GKSDLSCKVIMEE 75 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~-~v~s~~~~eGdg~~~Gsvr~~~~--~~-------g~~~~~~kErl~~ 75 (152)
++..+..|+||+++||+++- |...+.+|.+. .+ .+...+.|. .+|..-.+.+ .+ |... ...-++.+
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~~~~g~~~g~~~-~~~g~v~~ 76 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDALAKWLPPDGM-TGTVHEFDA-REGGGFRMSLTYFDPSVGKTTGNTD-VFGGRFLE 76 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHHHhhcCCCCCe-EeEEEEEec-ccCCeEEEEEEcCCccccccCCcEe-eeEEEEEE
Confidence 36678889999999999997 88889998762 22 222222232 2333333333 23 2222 44556777
Q ss_pred EeCCCCeEEEEEE--eCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 031834 76 IDYENNKITFKVI--EGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 76 ~D~~~~~~~y~i~--eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl 148 (152)
+++.+ +++|+.. ++..+ .....++.+.+.+++|.++++...-+. . .......+.-..++..|++||
T Consensus 77 v~p~~-~i~~~~~~~~~~~~---~~~~v~~~~~~~~~~T~lt~~~~~~~~--~-~~~~~~~~GW~~~l~~L~~~l 144 (146)
T cd08895 77 LVPNE-RIVYTDVFDDPSLS---GEMTMTWTLSPVSGGTDVTIVQSGIPD--G-IPPEDCELGWQESLANLAALV 144 (146)
T ss_pred EcCCC-EEEEEEEecCCCCC---ceEEEEEEEEecCCCEEEEEEEeCCCc--h-hhhhHHHHHHHHHHHHHHHHh
Confidence 76554 5566543 22222 123578888888888999888864321 1 123344566677777888776
No 30
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.62 E-value=1.5e-06 Score=64.00 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=80.9
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEE
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKIT 84 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 84 (152)
.++..++.|++|+++||+++. |+..+++|.|. . .++. .+|....+++.+.... ....++.++|+. +++.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~alt-dp~~~~~W~~~-~------~~~~-~~G~~~~~~~~~~~~~-~~~~~v~e~~p~-~~l~ 79 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALT-DPERLARWFAP-G------TGDL-RVGGRVEFVMDDEEGP-NATGTILACEPP-RLLA 79 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHc-CHHHHHhhcCC-C------CCCc-ccCceEEEEecCCCCC-ccceEEEEEcCC-cEEE
Confidence 468899999999999999997 89999999994 2 1222 4565555555421112 456777767554 6788
Q ss_pred EEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 031834 85 FKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 85 y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl 148 (152)
|+...++. ....+++|.+.++||.++.+.++.+... ......+.-..++..|.+||
T Consensus 80 ~~~~~~~~-----~~~~~~~l~~~~~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~ 135 (157)
T cd08899 80 FTWGEGGG-----ESEVRFELAPEGDGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAAL 135 (157)
T ss_pred EEecCCCC-----CceEEEEEEEcCCCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHH
Confidence 88765442 1245777888777899988888765431 12222333344555555555
No 31
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.57 E-value=2.4e-06 Score=61.92 Aligned_cols=137 Identities=14% Similarity=0.030 Sum_probs=79.9
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee--CCceeeEEEEEEEEEeCCCCeEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA--NGKSDLSCKVIMEEIDYENNKIT 84 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~~~~ 84 (152)
+..+..++||+++||+++- +...+.+|....--.+...+.|. .+|..-.+.+. +|... .+.-++.++++. +++.
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~-~~~g~~~ei~p~-~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPELVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEM-GFHGVYHEVTPP-ERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHHHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEe-cceEEEEEEcCC-CEEE
Confidence 5677889999999999997 78888898875322222334443 44544444443 44333 455667777654 4444
Q ss_pred EEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCC-CChHHHHHHHHHHHHHHHhhhc
Q 031834 85 FKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENV-PEPAAMLQLCVDVTKDVATKLI 149 (152)
Q Consensus 85 y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~-~~p~~~~~~~~~~~k~ie~yll 149 (152)
|+---.+... .....++++.+.++||+++.+..|....... ..-....+.-..++..|++||-
T Consensus 78 ~t~~~~~~~~--~~s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 78 QTEEFEGLPD--GVALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEeEecCCCC--CceEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4432111111 1235688888988899998886653211000 0011223455677788888874
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=3.8e-06 Score=60.94 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=77.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCc-eeEEEEEeCCcCCCCcEEEEEee--CCceeeEEEEEEEEEeCCCC-e
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDK-VQSVDLLEGEWGKAGSVIFGRYA--NGKSDLSCKVIMEEIDYENN-K 82 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~-v~s~~~~eGdg~~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~-~ 82 (152)
+..+..|+||+++||+++- +...+.+|++.. . ++...+.|. .+|..-.+.+. +|... ...-++.++|+.++ .
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~-~~~g~v~~i~p~~~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPELLKQWFCPKPW-TTEVAELDL-RPGGAFRTVMRGPDGEEF-PNPGCFLEVVPGERLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHHHhccCCCCCc-cceEEEEEe-ecCcEEEEEEECCCCCEe-cceEEEEEEeCCCEEE
Confidence 4567889999999999997 788888987631 1 111122332 33333334443 45433 35667888876554 4
Q ss_pred EEEEEEeCccc--cceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHH-----HHHHHHHHHHHHhhhc
Q 031834 83 ITFKVIEGNLL--DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAM-----LQLCVDVTKDVATKLI 149 (152)
Q Consensus 83 ~~y~i~eG~~~--~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~yll 149 (152)
|++.+.++..+ ... ...++++.|.++||+++.+..+... ...+.. .+.-..++..|++||-
T Consensus 78 ~t~~~~~~~~~~~~~~--~~v~~~~~~~~~gT~Ltl~~~~~~~----~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEKPF--MTAIITFEDEGGGTRYTARARHWTE----ADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCCCc--EEEEEEEEecCCcEEEEEEEEeCCH----HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 44434333221 121 3568889998889998877554221 001111 2445677788888874
No 33
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.47 E-value=1.4e-05 Score=57.03 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=79.1
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeE--EEEEeCCcCCCCcEEEEEee--CCce-eeEEEEEEEEEeCCC
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQS--VDLLEGEWGKAGSVIFGRYA--NGKS-DLSCKVIMEEIDYEN 80 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s--~~~~eGdg~~~Gsvr~~~~~--~g~~-~~~~kErl~~~D~~~ 80 (152)
|+..++.++||+++||+++- +...+.+|++. ... +...+.|. .+|..-.+.+. +|.. . .+.-++.++ +..
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~-~~~g~~~ei-~p~ 75 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEHITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSMGF-DFEGTYTEV-EPH 75 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHHHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCccc-ccceEEEEE-CCC
Confidence 57889999999999999997 78889999653 111 11122343 45555444442 3421 2 244556666 456
Q ss_pred CeEEEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 031834 81 NKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLI 149 (152)
Q Consensus 81 ~~~~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll 149 (152)
+++.|+..++ ...++++.|.++||.++-+ +..... ...+.....-..++..|++||-
T Consensus 76 ~~l~~~~~~~--------~~v~~~l~~~~~gT~l~l~--~~~~~~--~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 76 KLIEYTMEDG--------REVEVEFTEEGDGTKVVET--FDAENE--NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred CEEEEEcCCC--------CEEEEEEEECCCCEEEEEE--ECCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 7788876432 2468888998888988765 444322 1233445555777788888873
No 34
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.45 E-value=8e-06 Score=58.73 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=75.9
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCC-CceeEEEEEeCCcCCCCcEEEEEee--CCceeeEEEEEEEEEeCCCCeE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACP-DKVQSVDLLEGEWGKAGSVIFGRYA--NGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P-~~v~s~~~~eGdg~~~Gsvr~~~~~--~g~~~~~~kErl~~~D~~~~~~ 83 (152)
+..+..|+||+++||+++- +...+.+|++ .-+.. ...+.|. .+|..-.+.+. +|... ...-++.++++ ++++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~l~~W~~p~~~~~-~~~~~d~-~~GG~~~~~~~~~~g~~~-~~~g~v~e~~p-~~~l 76 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEHLAQWWGPEGFTN-TTHEFDL-RPGGRWRFVMHGPDGTDY-PNRIVFLEIEP-PERI 76 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHHHhhccCcCCCcc-eEEEEEe-cCCCEEEEEEECCCCCEe-cceEEEEEEcC-CCEE
Confidence 5678889999999999997 7888999874 22221 1122232 33443333332 45322 23456777754 5677
Q ss_pred EEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCC-CChHHHHHHHHHHHHHHHhhh
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENV-PEPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~-~~p~~~~~~~~~~~k~ie~yl 148 (152)
.|+.-.++. . ...++++.|.++||+++.+..|....... .-.....+....++..|++||
T Consensus 77 ~~t~~~~~~---~--~~v~~~~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 77 VYDHGSGPP---R--FRLTVTFEEQGGKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEEeccCCC---c--EEEEEEEEECCCCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 777643321 1 35788899988889998887653210000 000111334456677777776
No 35
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.36 E-value=3.5e-05 Score=55.82 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=64.8
Q ss_pred EEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCcee-eEEEEEEEEEeCCCCeEEEEEE
Q 031834 10 GVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSD-LSCKVIMEEIDYENNKITFKVI 88 (152)
Q Consensus 10 ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~-~~~kErl~~~D~~~~~~~y~i~ 88 (152)
+.+|++|+++||+.+. |...+.+-+|+ +++.+.+. +. -.+.++ +.+ +.-.. -..+=++..+|+.++.. ..+-
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~l~~ciPG-~~~~e~~~-~~-~~~~~~-v~v-G~i~~~~~g~~~~~~~~~~~~~~-~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPENLARCIPG-VESIEKVG-DE-YKGKVK-VKV-GPIKGTFDGEVRITEIDPPESYT-LEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHHHHHHSTT-EEEEEEEC-TE-EEEEEE-EES-CCCEEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred cEEecCCHHHHHHHhc-CHHHHHhhCCC-cEEeeecC-cE-EEEEEE-EEe-ccEEEEEEEEEEEEEcCCCcceE-eeee
Confidence 5789999999999997 89999999997 99998864 31 112222 111 22111 02344555566666542 3333
Q ss_pred eCccccceeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 89 EGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 89 eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
..+.... .+..+.+++...+ ++|.+.|+++++..+.
T Consensus 75 g~g~~~~-~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 75 GRGRGGG-SSASANITLSLEDDGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEECTCC-EEEEEEEEEEECCCTCEEEEEEEEEEEECH
T ss_pred ccCCccc-eEEEEEEEEEcCCCCCcEEEEEEEEEEccC
Confidence 2222222 3445666666553 3599999999998765
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.33 E-value=5.4e-06 Score=60.72 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=84.4
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeE
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~ 83 (152)
.+++.+.-++.+|+++|+++. |....|+.+|- -...++.+.++. .-+=.++.+ .|-.. +..-|.. .++..++|
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~-dV~~YP~FlP~-C~~s~v~~~~~~--~l~A~l~V~~k~i~e-~F~Trv~-~~~~~~~I 75 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVN-DVESYPEFLPW-CSASRVLERNER--ELIAELDVGFKGIRE-TFTTRVT-LKPTARSI 75 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHH-HHHhCchhccc-cccceEeccCcc--eeEEEEEEEhhheee-eeeeeee-ecCchhhh
Confidence 467888999999999999996 89999999994 777777777642 234444444 34333 5666644 56777788
Q ss_pred EEEEEeCccccceeeEEEEEEEEec-CCCeEEEEEEEEEcCCC
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPK-GEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~-~~gs~v~W~~~ye~~~~ 125 (152)
.-++++|++ +...++++++|. +++|.|+..++||-.+.
T Consensus 76 ~~~l~~GPF----k~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 76 DMKLIDGPF----KYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhhhcCCh----hhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 888899975 556789999996 56899999999998654
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.11 E-value=0.00015 Score=52.58 Aligned_cols=130 Identities=14% Similarity=0.048 Sum_probs=72.8
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCce-------eEEEEEeCCcCCC-CcEEEEEeeCCceeeEEEEEEEEEeC
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKV-------QSVDLLEGEWGKA-GSVIFGRYANGKSDLSCKVIMEEIDY 78 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v-------~s~~~~eGdg~~~-Gsvr~~~~~~g~~~~~~kErl~~~D~ 78 (152)
+..++.|+||+++||+++- + .+.+|.+..- ..|++ +- .+ |..+ ....+|.. ...=++.++++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~l~~W~~p~~~~~~~~~~~~~~-d~---~~GG~~~-~~~~~g~~--~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--GFGAWWPPEYHFVFSPGAEVVF-EP---RAGGRWY-EIGEDGTE--CEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--chhhccCCCcccccCCCccEEE-cc---cCCcEEE-EecCCCcE--eceEEEEEEcC
Confidence 6789999999999999997 5 4677754211 23333 11 23 3333 22224532 33567777765
Q ss_pred CCCeEEEEEE-eC--ccccceeeEEEEEEEEecC-CCeEEEEEEEEEcCCCCC-CCh---HHHHHHHHHHHHHHHhhh
Q 031834 79 ENNKITFKVI-EG--NLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNENV-PEP---AAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 79 ~~~~~~y~i~-eG--~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~~~-~~p---~~~~~~~~~~~k~ie~yl 148 (152)
. ++++|+-. .. +...... -..++++.|.+ +||+++.+-.+-....+. ... ....+.-..++..|++||
T Consensus 72 ~-~~l~~tw~~~~~~~~~~~~~-t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 72 P-SRLVFTWQINADWRPDPDKA-SEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred C-CEEEEEeccCCCcCcCCCCc-eEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 4 45555543 11 1111122 25789999988 899998887765432210 111 122334455667777765
No 38
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.04 E-value=0.0011 Score=50.13 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=74.0
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CC---ceeeEEEEEEEEEeCCC
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NG---KSDLSCKVIMEEIDYEN 80 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g---~~~~~~kErl~~~D~~~ 80 (152)
-.+..+..|++|++++|+++. |.+..|+|.|. +.++++++-.+.. ..+-...+. .. .+. .+-.+-...+..+
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~~~~w~~~-~~~~~vie~~~~~-~~i~~~~~~~p~pvs~Rd-fv~~~~~~~~~~~ 116 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTESYPQWMPN-CKESRVLKRTDDN-ERSVYTVIDLPWPVKDRD-MVLRSTTEQDADD 116 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHhHHHHHhh-cceEEEeecCCCC-cEEEEEEEecccccCCce-EEEEEEEEEcCCC
Confidence 456788889999999999997 88999999995 8999998754311 122223332 11 112 2222212233324
Q ss_pred CeEEEEEEeCcc--c--cc---eeeEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 031834 81 NKITFKVIEGNL--L--DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 125 (152)
Q Consensus 81 ~~~~y~i~eG~~--~--~~---~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~ 125 (152)
..+...+.+++. + .. ...+.+.+.+.|.++ +|.+++...+++.+.
T Consensus 117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~ 169 (195)
T cd08876 117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS 169 (195)
T ss_pred CEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC
Confidence 555555554432 2 12 355667788889854 699999999998763
No 39
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.04 E-value=0.00036 Score=49.47 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=61.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFK 86 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 86 (152)
++.+..++||+++||+++- +...+.+|... ..+.+...| |..+ +.+| .+.-++.++++ +++++|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~l~~W~~~-~~~~d~~~G-----G~~~---~~~g----~~~g~~~~i~p-~~~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEERVQAFTRS-PAKVDAKVG-----GKFS---LFGG----NITGEFVELVP-GKKIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHHHHhhcCC-CceecCCCC-----CEEE---EeCC----ceEEEEEEEcC-CCEEEEE
Confidence 5678899999999999997 78889999863 334433222 3333 3344 23445666764 4445554
Q ss_pred EEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEc
Q 031834 87 VIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 122 (152)
Q Consensus 87 i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~ 122 (152)
---.+.+.. ..-..++.+.+.++||.++.+-...+
T Consensus 67 w~~~~~~~~-~~s~v~~~l~~~~~gT~ltl~~~g~~ 101 (126)
T cd08892 67 WRFKSWPEG-HYSTVTLTFTEKDDETELKLTQTGVP 101 (126)
T ss_pred EEcCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCC
Confidence 432222211 11357888888877898877766554
No 40
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00035 Score=51.32 Aligned_cols=138 Identities=17% Similarity=0.083 Sum_probs=76.9
Q ss_pred CcceeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCC
Q 031834 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 2 ~~~~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~ 81 (152)
.....+..+..|++|+++||+++- +...+++|+...=...++.-| .+....+...+|... ....++.++.+..|
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~T-dpe~l~~W~~~~~~~~d~r~g----g~~~~~~~~~~g~~~-~~~~~~~~v~p~~r 78 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALT-DPELLARWFMPGGAEFDARTG----GGERVRFRGPDGPVH-SFEGEYLEVVPPER 78 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhc-CHHHHHhhcCCCCCccceecC----CceEEeeecCCCCee-ecceEEEEEcCCcE
Confidence 345788999999999999999997 888999998721001122112 123334444455444 56677777865554
Q ss_pred -eEEEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChH---HH--HHHHHHHHHHHHhhhc
Q 031834 82 -KITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPA---AM--LQLCVDVTKDVATKLI 149 (152)
Q Consensus 82 -~~~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~---~~--~~~~~~~~k~ie~yll 149 (152)
.|+|..-+++.+ ...-..++++.|..+|. +++..........+... .. .+.-..++..++++|-
T Consensus 79 Iv~tw~~~~~~~~--~~~~~v~~~l~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 79 IVFTWDFDEDGEP--FLKSLVTITLTPEDDGG--TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEeccCCCCCc--ccCceEEEEEEEecCCC--cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 455555544432 12225788888864432 23333333332212111 11 3445566666666653
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.88 E-value=0.0004 Score=48.07 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCC-cEEEEEeeCCceeeEEEEEEEEEeCCCCeEEEEEEeCcc
Q 031834 14 KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAG-SVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNL 92 (152)
Q Consensus 14 ~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~G-svr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eG~~ 92 (152)
+||+++||+++- +...+.+|.+......+. .+| +++... .+|... ...=++.++++..+ +.|+.--++.
T Consensus 1 ~ap~e~Vw~a~t-~~~~~~~W~~~~~~~~~~------~~Gg~~~~~~-~~g~~~-~~~~~v~~~~p~~~-i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEGLAQWFTTSEAEMDF------RPGGSFRFMD-PDGGEF-GFDGTVLEVEPPER-IVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHHH-SHHHHHHHSEEEEEEEEC------STTEEEEEEE-TTSEEE-EEEEEEEEEETTTE-EEEEEEEETS
T ss_pred CcCHHHHHHHHC-CHhHHhhccCCCcceeee------ecCCEEEEEe-cCCCCc-eeeEEEEEEeCCEE-EEEEEEccCC
Confidence 689999999997 788899993211222222 334 444412 355433 45555788866554 7777543332
Q ss_pred ccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHH-HHHHHHHHHHHHHhhh
Q 031834 93 LDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAA-MLQLCVDVTKDVATKL 148 (152)
Q Consensus 93 ~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~k~ie~yl 148 (152)
... .....++.+.+.+++|.++-+..=.+... .... ....-..++..|.+||
T Consensus 71 ~~~-~~~~v~~~~~~~~~~T~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 PDG-PESRVTFEFEEEGGGTRLTLTHSGFPDDD---EEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp SSC-EEEEEEEEEEEETTEEEEEEEEEEEHSHH---HHHHCHHHHHHHHHHHHHHHH
T ss_pred CCC-CceEEEEEEEEcCCcEEEEEEEEcCCccH---HHHHHHHHHHHHHHHHHHHHh
Confidence 211 23367888889777888877763222111 0111 3344466666776665
No 42
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.84 E-value=0.00049 Score=49.29 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=62.3
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITF 85 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 85 (152)
+..++.|+||+++||+++- +...+.+|.+. -.+.++ .+|..-.+.|. .+. .+.=++.++ +..+++.|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~l~~W~~~-~~~~~~------~~Gg~~~~~~~~~~~---~~~g~~~~~-~p~~~l~~ 69 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEITTKFWFT-GSSGRL------EEGKTVTWDWEMYGA---SVPVNVLEI-EPNKRIVI 69 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHHhcccccc-CCCccc------cCCCEEEEEEEccCC---ceEEEEEEE-cCCCEEEE
Confidence 5689999999999999997 78889887553 223333 23443345665 221 233456667 45577777
Q ss_pred EEEeCccccceeeEEEEEEEEecC-CCeEEEEEEEE
Q 031834 86 KVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKY 120 (152)
Q Consensus 86 ~i~eG~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~y 120 (152)
+.-.++ ... ..++++.+.+ +||+++-+-..
T Consensus 70 ~w~~~~---~~s--~v~~~l~~~~~ggT~ltl~~~~ 100 (136)
T cd08901 70 EWGDPG---EPT--TVEWTFEELDDGRTFVTITESG 100 (136)
T ss_pred EecCCC---CCE--EEEEEEEECCCCcEEEEEEECC
Confidence 764322 122 4688888987 78888777543
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.30 E-value=0.027 Score=41.34 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=73.8
Q ss_pred EEEEEEcCC-------HHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCC
Q 031834 8 EAGVEIKAP-------ASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYEN 80 (152)
Q Consensus 8 ~~ei~i~a~-------a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~ 80 (152)
++.++||-| .+++|+.+.....+-..+.|+ +.+|++++.++ ---.|.++|++. .++|++.. ...
T Consensus 3 ~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~~--~~l~Rel~f~~~----~v~e~vt~--~~~ 73 (141)
T cd08863 3 EHTVPINDPGNIPTLTRAQLWRGLVLRAREPQLFVPG-LDRCEVLSESG--TVLERELTFGPA----KIRETVTL--EPP 73 (141)
T ss_pred cEEEecCCCCCCCccCHHHHHhHHHhhhCCchhcccc-cceEEEEecCC--CEEEEEEEECCc----eEEEEEEe--cCC
Confidence 345555543 569999988666666678885 99999997543 245699999754 69999774 456
Q ss_pred CeEEEEEEe-CccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCCh--HHHHHHHHHHHHH
Q 031834 81 NKITFKVIE-GNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEP--AAMLQLCVDVTKD 143 (152)
Q Consensus 81 ~~~~y~i~e-G~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p--~~~~~~~~~~~k~ 143 (152)
.++.|.+-. |+. .++.+....+|. .-.+..|+....+..++ ..+.+...++.+.
T Consensus 74 ~~v~f~~~~~g~~--------l~~~iee~~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~ 130 (141)
T cd08863 74 SRVHFLQADAGGT--------LTNTIEEPEDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE 130 (141)
T ss_pred cEEEEEecCCCCe--------EEEEeccCCCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence 778888776 322 233332222354 44677777766653332 3334444444443
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.06 E-value=0.012 Score=42.11 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=64.3
Q ss_pred EcCCHHHHHHHhhhcccccccc-CCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCC-eEEEEEEeC
Q 031834 13 IKAPASTVREYFCSKLHHVSSA-CPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENN-KITFKVIEG 90 (152)
Q Consensus 13 i~a~a~kvw~~~~~~~~~lp~~-~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~-~~~y~i~eG 90 (152)
++||+++||+++- +...+.+| .+. ...+++..| |..+. ..+ .+.-+..++|+..| .+++...+.
T Consensus 1 f~ap~e~Vw~A~T-dp~~l~~w~~~~-~~~~d~~~G-----G~f~~---~~~----~~~G~~~ev~pp~rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYTLTRLSLGS-PAEMDAKVG-----GKFSL---FNG----SVEGEFTELEKPKKIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHHc-CHHHHHHHhcCC-CccccCCcC-----CEEEE---ecC----ceEEEEEEEcCCCEEEEEEecCCC
Confidence 4799999999997 78888888 432 222222222 33332 223 23345666765554 444444321
Q ss_pred ccccceeeEEEEEEEEecC-CCeEEEEEEE-EEcCCCCC--CChHHHHHHHHH-HHHHHHhhh
Q 031834 91 NLLDQYKSFCCFFQVTPKG-EGSFVTWTLK-YEKPNENV--PEPAAMLQLCVD-VTKDVATKL 148 (152)
Q Consensus 91 ~~~~~~~~~~~~i~v~p~~-~gs~v~W~~~-ye~~~~~~--~~p~~~~~~~~~-~~k~ie~yl 148 (152)
+ ...++ ..++++.|.+ ++|.++-+.. +....... ...+...+.-.. ++..|++||
T Consensus 67 ~-~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 67 E-EDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred C-CCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 1 11222 5788999964 5788887776 32221100 112333334444 577777776
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.05 E-value=0.041 Score=40.69 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=43.6
Q ss_pred EEEEEEEcCCH--------HHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeC
Q 031834 7 VEAGVEIKAPA--------STVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDY 78 (152)
Q Consensus 7 v~~ei~i~a~a--------~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~ 78 (152)
+++.+.||-|. +++|+.+.....+-..++| .+.+|++++-. ...-.|.++|++ . .++|++.. .
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~fg~---~-~v~E~v~~--~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTFGG---A-TVRERVTL--Y 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEETT---E-EEEEEEEE--E
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEECC---c-EEEEEEEE--e
Confidence 45556665554 5799999866666677899 59999998643 346789999943 3 79999774 3
Q ss_pred CCCeEEE
Q 031834 79 ENNKITF 85 (152)
Q Consensus 79 ~~~~~~y 85 (152)
...++.|
T Consensus 73 ~~~~V~f 79 (149)
T PF08982_consen 73 PPERVDF 79 (149)
T ss_dssp TTTEEEE
T ss_pred CCcEEEE
Confidence 4457777
No 46
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.11 Score=37.87 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=79.1
Q ss_pred ceeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee----CCceeeEEEEEEEE--Ee
Q 031834 4 TGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA----NGKSDLSCKVIMEE--ID 77 (152)
Q Consensus 4 ~~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~----~g~~~~~~kErl~~--~D 77 (152)
+|++.+...|+||.|.||+... ...+|..+-|. .+ +-+-+|+ ..+....++.. +-++...++-|+++ +|
T Consensus 1 m~tF~~~~~i~aP~E~VWafhs-rpd~lq~LTpp-w~-VV~p~g~--eitqgtri~m~l~pfglp~~~tW~Arhte~~~d 75 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHS-RPDALQRLTPP-WI-VVLPLGS--EITQGTRIAMGLTPFGLPAGLTWVARHTESGFD 75 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhc-CccHHHhcCCC-cE-EeccCCC--cccceeeeeecceeecCCCCceEEEEeeecccC
Confidence 4678899999999999999986 67778888885 33 3223453 33444444432 21111267888776 54
Q ss_pred CCCCeEEEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCC
Q 031834 78 YENNKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN 126 (152)
Q Consensus 78 ~~~~~~~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~ 126 (152)
.-.+++=..+.|+++.-| ..-+-++.+.+++|...=.+.|+...+.
T Consensus 76 -~~~~FtDv~i~gPfp~~~--WrHtH~F~~egg~TvliD~Vsye~p~g~ 121 (153)
T COG4276 76 -NGSRFTDVCITGPFPALN--WRHTHNFVDEGGGTVLIDSVSYELPAGT 121 (153)
T ss_pred -CcceeeeeeecCCcccee--eEEEeeeecCCCcEEEEeeEEeeccCcc
Confidence 345777788999887322 3457788898999999999999987663
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.78 E-value=0.66 Score=35.93 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=72.2
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C--C---ceeeEEEEEEEEEeCCC
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N--G---KSDLSCKVIMEEIDYEN 80 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~--g---~~~~~~kErl~~~D~~~ 80 (152)
+-.+.++++|++++|+++. |...-++|.+ .++++++++--+... .+-.+.+. . . ++. .+.-+.. .++.+
T Consensus 47 ~~ge~~v~as~~~v~~ll~-D~~~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RD-fV~l~~~-~~~~~ 121 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVK-DPRTRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRD-FCCLQVE-AKEGE 121 (205)
T ss_pred EEEEEEEcCCHHHHHHHHh-CcchhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCe-EEEEEEE-EECCC
Confidence 4467788999999999996 8899999999 699999987422122 33333332 1 1 222 3333322 23333
Q ss_pred C-eEEEEEEeC-ccc--c----ceeeEEEEEEEEec---CC-CeEEEEEEEEEcCCCCCCC
Q 031834 81 N-KITFKVIEG-NLL--D----QYKSFCCFFQVTPK---GE-GSFVTWTLKYEKPNENVPE 129 (152)
Q Consensus 81 ~-~~~y~i~eG-~~~--~----~~~~~~~~i~v~p~---~~-gs~v~W~~~ye~~~~~~~~ 129 (152)
. .+.-+-+.- .+| . ....+.+-+.+.|. ++ .|.++.....++.+++.|.
T Consensus 122 ~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 122 LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 3 332222222 222 1 12345667888897 54 5999999999999766543
No 48
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.45 E-value=1 Score=35.77 Aligned_cols=142 Identities=10% Similarity=0.078 Sum_probs=87.2
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeC---C-ceeeEEEEEEEEE--eCC
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN---G-KSDLSCKVIMEEI--DYE 79 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~---g-~~~~~~kErl~~~--D~~ 79 (152)
.+..+..+++|++++|+++. |...-++|.++ ..++++++--+...+ +-.+.++. - ++. .+--+-... +..
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~-D~~~R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RD-fV~~~s~~~~~~~~ 153 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLS-DPFKRPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPND-FVLLVSRRKPATDG 153 (235)
T ss_pred EEEEEEEecCCHHHHHHHHh-Ccchhhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCce-EEEEEEEEeccCCC
Confidence 46678889999999999996 88899999995 889999873221223 33333331 1 112 333222221 222
Q ss_pred C-CeEEEEEEe-Cccc--c---ceeeEEEEEEEEecC-CCeEEEEEEEEEcCCCC--CCChHHHHHHHHHHHHHHHhhhc
Q 031834 80 N-NKITFKVIE-GNLL--D---QYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN--VPEPAAMLQLCVDVTKDVATKLI 149 (152)
Q Consensus 80 ~-~~~~y~i~e-G~~~--~---~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~~--~~~p~~~~~~~~~~~k~ie~yll 149 (152)
+ ..+...-+. ..+| . ....+.+-+.+.|.+ ++|.|+.....+|+--. ..+-.++-......++.-++||.
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLV 233 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhc
Confidence 2 233333333 1121 1 245677888999986 46999999988876432 22334555566777888899987
Q ss_pred cC
Q 031834 150 PQ 151 (152)
Q Consensus 150 ~~ 151 (152)
.|
T Consensus 234 ~~ 235 (235)
T cd08873 234 TN 235 (235)
T ss_pred cC
Confidence 65
No 49
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.40 E-value=0.65 Score=34.20 Aligned_cols=110 Identities=20% Similarity=0.146 Sum_probs=63.2
Q ss_pred EEEEEEEcCCHHHHHHHhhhcccc--ccccCCC---ceeEEEEEeCCcCCCCcEEEE-Eee-CC----------ceeeEE
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHH--VSSACPD---KVQSVDLLEGEWGKAGSVIFG-RYA-NG----------KSDLSC 69 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~--lp~~~P~---~v~s~~~~eGdg~~~Gsvr~~-~~~-~g----------~~~~~~ 69 (152)
++.++++++|+++||++|.+.... .-+.+.. .+.+++. +|+| -+++.- +.. +. ... .+
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g---~~v~~~~~v~~~~lP~~~~k~v~~~l-~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDG---VRVTVRQTVPADKLPSAARKFVGGDL-RV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCe---EEEEEEEecChhhCCHHHHHhcCCCe-EE
Confidence 357889999999999999842111 1122221 2344432 3332 111111 111 11 001 23
Q ss_pred EEEEEEE---eCCCCeEEEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031834 70 KVIMEEI---DYENNKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 125 (152)
Q Consensus 70 kErl~~~---D~~~~~~~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~ 125 (152)
++. +.+ ++..++.+|++--.+.| -+.++++.+.|.++||.+.++++.+..-+
T Consensus 76 ~~~-e~w~~~~~g~~~g~~~~~~~G~P---~~~~G~~~L~~~~~gt~~~~~g~v~v~VP 130 (159)
T PF10698_consen 76 TRT-ETWTPLDDGRRTGTFTVSIPGAP---VSISGTMRLRPDGGGTRLTVEGEVKVKVP 130 (159)
T ss_pred EEE-EEEecCCCCeEEEEEEEEecCce---EEEEEEEEEecCCCCEEEEEEEEEEEEEc
Confidence 322 444 56777777776543333 45789999999888999999999887654
No 50
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=94.43 E-value=1.8 Score=33.40 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=66.4
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C-C---ceeeEEEEEEEEEeCCCC
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N-G---KSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~-g---~~~~~~kErl~~~D~~~~ 81 (152)
+..+..+++|++++++.+.+|....++|.+. +.++++++--+..---++.++.+ . + ++. .+.-|...-+..+.
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD-~V~~~~~~~~~~~~ 128 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRD-FVSVRCAKRRGSTC 128 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccc-eEEEEEEEEcCCcE
Confidence 5578889999999996666688889999995 88888875321111112322222 1 1 111 23222222233332
Q ss_pred eEEEEEEeCcc-c--cc---eeeEEEEEEEEecC---CCeEEEEEEEEEcCCC
Q 031834 82 KITFKVIEGNL-L--DQ---YKSFCCFFQVTPKG---EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 82 ~~~y~i~eG~~-~--~~---~~~~~~~i~v~p~~---~gs~v~W~~~ye~~~~ 125 (152)
.+.....+-+- + .+ .....+.+.+.|.+ +.|.++|.+..++++.
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~ 181 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW 181 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC
Confidence 22111122221 1 11 23445677788873 3699999999999876
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=93.50 E-value=3.1 Score=33.02 Aligned_cols=113 Identities=9% Similarity=0.092 Sum_probs=65.9
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeC-CcCCCCcEEEEEee--CCcee--eEEEEEEEEEeCCC
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG-EWGKAGSVIFGRYA--NGKSD--LSCKVIMEEIDYEN 80 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eG-dg~~~Gsvr~~~~~--~g~~~--~~~kErl~~~D~~~ 80 (152)
.+..+..+++|++++++++. |....++|.++ +.++++++- +. .- .+..++.. .++.. ..+--+-..-+.++
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~-D~~~r~~Wd~~-~~e~~vIe~id~-~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLS-DLRRRPEWDKH-YRSCELVQQVDE-DD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHh-ChhhhhhhHhh-ccEEEEEEecCC-Cc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 45567789999999999995 89999999995 889999864 32 22 25554433 12111 12222211122223
Q ss_pred C---eEEEEEEe-Cccc--cc---eeeEEEEEEEEecCC-CeEEEEEEEEEc
Q 031834 81 N---KITFKVIE-GNLL--DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEK 122 (152)
Q Consensus 81 ~---~~~y~i~e-G~~~--~~---~~~~~~~i~v~p~~~-gs~v~W~~~ye~ 122 (152)
. .+....+. -+.| .+ ...+.+-+.+.|.++ .|.+.+...-+|
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 2 12223232 2222 22 334566788888864 688888776665
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.12 E-value=4.3 Score=31.09 Aligned_cols=137 Identities=11% Similarity=0.117 Sum_probs=74.7
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeC----CceeeEEE--EEEEEEeC
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN----GKSDLSCK--VIMEEIDY 78 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~----g~~~~~~k--Erl~~~D~ 78 (152)
-.+..+-.|++|++.+.+++. |....|+|.|. ..+++.++..+ ..-.+-.+.+.- +.+. .+- -.++.++
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~-d~~~~~~W~p~-~~~~~~l~~~~-~~~~v~y~~~~~PwPv~~RD-~v~~~~~~~~~~- 120 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLN-EVELYKTWVPF-CIRSKKVKQLG-RADKVCYLRVDLPWPLSNRE-AVFRGFGVDRLE- 120 (215)
T ss_pred EEEEEEEEecCChhHeEEEEe-hhhhHhhhccc-ceeeEEEeecC-CceEEEEEEEeCceEecceE-EEEEEEEEeeec-
Confidence 356678889999999999997 78889999996 55555554321 111222222210 1111 221 1122222
Q ss_pred CCCeEEEEEE--eC----------ccc-cc-----eeeEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCCh--HHH-HHH
Q 031834 79 ENNKITFKVI--EG----------NLL-DQ-----YKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEP--AAM-LQL 136 (152)
Q Consensus 79 ~~~~~~y~i~--eG----------~~~-~~-----~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~~~~~p--~~~-~~~ 136 (152)
++..+....- .. ++| .. ...+.+-+.++|.++ .|.+++.+..+|.+...|.. +.+ +++
T Consensus 121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~ 200 (215)
T cd08877 121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKF 200 (215)
T ss_pred cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHH
Confidence 4444433222 11 123 11 245667788889854 69999999888876534321 111 444
Q ss_pred HHHHHHHHHh
Q 031834 137 CVDVTKDVAT 146 (152)
Q Consensus 137 ~~~~~k~ie~ 146 (152)
+..+++.|.+
T Consensus 201 ~~~~~~~l~k 210 (215)
T cd08877 201 AGLLFEKIQK 210 (215)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 53
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=90.46 E-value=6.7 Score=30.23 Aligned_cols=118 Identities=10% Similarity=0.003 Sum_probs=63.1
Q ss_pred eEEEEEEEcCCHHHHHH-HhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C-Ccee--eEEEEEEEEEeCCC
Q 031834 6 QVEAGVEIKAPASTVRE-YFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N-GKSD--LSCKVIMEEIDYEN 80 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~-~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~-g~~~--~~~kErl~~~D~~~ 80 (152)
.+..+..+++|++++|. ++ .|....++|.++ +.++++++--+..---++.++.+ . |+.. ..+--|--.-+...
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll-~D~~~~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVI-LQPEKMVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hChhhccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence 45678889999999985 66 489999999995 88999886321111111233332 1 2111 13333322223333
Q ss_pred C-eEEEEEEeCccc--ccee----eEEEEEEEEe-cC-CCeEEEEEEEEEcCCC
Q 031834 81 N-KITFKVIEGNLL--DQYK----SFCCFFQVTP-KG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 81 ~-~~~y~i~eG~~~--~~~~----~~~~~i~v~p-~~-~gs~v~W~~~ye~~~~ 125 (152)
. .+..++.-...| .+|- ...+.+-..+ .+ +.|.++|....++++.
T Consensus 128 ~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~ 181 (209)
T cd08906 128 YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR 181 (209)
T ss_pred EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC
Confidence 2 223333222222 2221 1122233333 33 3699999999999884
No 54
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=88.05 E-value=8.3 Score=28.01 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=67.3
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CC---ceeeEEEEEEEEEeCCCC
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NG---KSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g---~~~~~~kErl~~~D~~~~ 81 (152)
.+..+..+++|++++|+++. +....++|-| .+.++++++-.. ..-.+....+. .. ++. .+--+-...++++
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~-d~~~~~~w~~-~~~~~~vl~~~~-~~~~i~~~~~~~p~p~~~Rd-fv~~~~~~~~~~~- 114 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLM-DIDLRKKWDK-NFEEFEVIEEID-EHTDIIYYKTKPPWPVSPRD-FVYLRRRRKLDDG- 114 (193)
T ss_pred eEEEEEEECCCHHHHHHHHh-CCchhhchhh-cceEEEEEEEeC-CCeEEEEEEeeCCCccCCcc-EEEEEEEEEcCCC-
Confidence 45677889999999999998 6788899999 588999887432 11344444454 21 112 2222222223322
Q ss_pred eEEEEE--EeCc-cc--cc-ee--eEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 82 KITFKV--IEGN-LL--DQ-YK--SFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 82 ~~~y~i--~eG~-~~--~~-~~--~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
++.... ++.+ .+ .. .+ -+.+.+.+.|.+ ++|.+++....++.+.
T Consensus 115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 222222 2221 12 11 11 123446677874 4799999999998874
No 55
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=87.32 E-value=11 Score=28.65 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=73.1
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeC--C---ceeeEEEEEEEEEeCCCC
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN--G---KSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~--g---~~~~~~kErl~~~D~~~~ 81 (152)
+..+..+++|+++++..+..|.+..++|.+. +..+++++--++.---+...+... + .+. .+--|-...++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RD-fV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRD-FVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccc-eEEEEEEEecCCeE
Confidence 5567889999999997655688889999995 778787764211111111111111 1 112 33223222333222
Q ss_pred eEEEEEEeC-ccc--cc---eeeEEEEEEEEecC---CCeEEEEEEEEEcCCCCCCCh--HHH-HHHHHHHHHHHHhhh
Q 031834 82 KITFKVIEG-NLL--DQ---YKSFCCFFQVTPKG---EGSFVTWTLKYEKPNENVPEP--AAM-LQLCVDVTKDVATKL 148 (152)
Q Consensus 82 ~~~y~i~eG-~~~--~~---~~~~~~~i~v~p~~---~gs~v~W~~~ye~~~~~~~~p--~~~-~~~~~~~~k~ie~yl 148 (152)
.+...-++- ..+ .+ -..+.+.+.+.|.+ ++|.++|.+..++++.- |.- +.. .......++.+..++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeeehhhHHHHHHHHHHHHHHH
Confidence 222222331 111 12 22344667778863 36999999999998652 211 111 233344555555554
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=83.11 E-value=19 Score=27.62 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=61.6
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccc--cccCCCceeEEEEEeCCcCCCCcEEEEEee-C-C----ceeeEEEEE-EEEEe
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHV--SSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N-G----KSDLSCKVI-MEEID 77 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~l--p~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~-g----~~~~~~kEr-l~~~D 77 (152)
+..+..++++++++++.+. |..+- ++|-+ .+.++++++--+... .|-.+..+ . + ++. .+--| ....+
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~-~~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RD-fV~~~~~~~~~ 123 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQ-NVKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRD-FVDVVLVKRYE 123 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhh-ccccEEEEEEecCCE-EEEEEecchhcCCCcCCCc-eEEEEEEEecC
Confidence 5678889999999999997 44333 89999 488999987421121 22222222 1 1 112 22212 22223
Q ss_pred CCCCeEEEEEEeCc-cc--ccee-e----EEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 78 YENNKITFKVIEGN-LL--DQYK-S----FCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 78 ~~~~~~~y~i~eG~-~~--~~~~-~----~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
+....+.+...+-+ .| .+|- . +...++..|.+ ++|.++|.+..++++.
T Consensus 124 d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~ 180 (208)
T cd08903 124 DGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY 180 (208)
T ss_pred CceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC
Confidence 33233333334332 12 2221 1 22334444433 4699999999999764
No 57
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=82.21 E-value=23 Score=28.10 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=65.1
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEeeC--C--ceeeEEEEEEEEEeC-C
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN--G--KSDLSCKVIMEEIDY-E 79 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~--g--~~~~~~kErl~~~D~-~ 79 (152)
..+..+..+++|++++++++- |....++|.++ ..++++++--+..-- |..++-.- . ++. .+..+-..... .
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~-D~~~r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD-~V~~~s~~~~~~d 153 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLS-DFTKRPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKD-LVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHh-ChhhhchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCce-EEEEEEEEecCCC
Confidence 356677889999999999996 89999999995 888898864221112 66654221 1 111 22222111122 2
Q ss_pred CCeEEEEE--EeC-ccc--cc---eee-EEEEEEEEecC-CCeEEEEEEEEEc
Q 031834 80 NNKITFKV--IEG-NLL--DQ---YKS-FCCFFQVTPKG-EGSFVTWTLKYEK 122 (152)
Q Consensus 80 ~~~~~y~i--~eG-~~~--~~---~~~-~~~~i~v~p~~-~gs~v~W~~~ye~ 122 (152)
+..|.-.+ +.- -+| .+ ... +.+. .+.|.+ ++|.|+....-+|
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 22232222 222 222 22 233 3334 778875 4799999998888
No 58
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=79.95 E-value=27 Score=27.44 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=75.8
Q ss_pred eEEEEEEEc-CCHHHHHHHhhhccccccccCCCceeEEEEEeC-CcCCCCcEEEEEeeCC----ceeeEE-EEEEEEEeC
Q 031834 6 QVEAGVEIK-APASTVREYFCSKLHHVSSACPDKVQSVDLLEG-EWGKAGSVIFGRYANG----KSDLSC-KVIMEEIDY 78 (152)
Q Consensus 6 ~v~~ei~i~-a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eG-dg~~~Gsvr~~~~~~g----~~~~~~-kErl~~~D~ 78 (152)
.+.....++ ++++.+.+++. |....++|... +.+.++++- +.+. .|-...++-. ++. .+ .-++...++
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~r~~Wd~~-~~~~~vie~l~~~~--~I~Y~~~k~PwPvs~RD-~V~~~~~~~~~d 127 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFF-DPDVRMDWETT-LENFHVVETLSQDT--LIFHQTHKRVWPAAQRD-ALFVSHIRKIPA 127 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHh-ChhhHHHHHhh-hheeEEEEecCCCC--EEEEEEccCCCCCCCcE-EEEEEEEEecCc
Confidence 356677777 99999999997 78889999994 888888753 2211 1222222210 112 22 222233333
Q ss_pred CC-----C---eEEEEEEeCccccceeeEEEEE-----------------EEEecCCCeEEEEEEEEEcCCCCCCCh--H
Q 031834 79 EN-----N---KITFKVIEGNLLDQYKSFCCFF-----------------QVTPKGEGSFVTWTLKYEKPNENVPEP--A 131 (152)
Q Consensus 79 ~~-----~---~~~y~i~eG~~~~~~~~~~~~i-----------------~v~p~~~gs~v~W~~~ye~~~~~~~~p--~ 131 (152)
.. . .+..++.=...|..-.-.++.. .+.|.+++|.+.+....+|++.- |.. +
T Consensus 128 ~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~i-P~wvvn 206 (235)
T cd08872 128 LEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWA-PASVLR 206 (235)
T ss_pred cccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCc-cHHHHH
Confidence 21 1 2333332222331111122332 23343346899999988887753 211 1
Q ss_pred H-HHHHHHHHHHHHHhhhccC
Q 031834 132 A-MLQLCVDVTKDVATKLIPQ 151 (152)
Q Consensus 132 ~-~~~~~~~~~k~ie~yll~~ 151 (152)
. ++..+-++++.+.+|++.+
T Consensus 207 ~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 207 AVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHhhchHHHHHHHHHHHHh
Confidence 1 1556678889999988753
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=77.24 E-value=30 Score=26.42 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=65.1
Q ss_pred EEEEEEE-cCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C---CceeeEEEEEEEEEeCCCC
Q 031834 7 VEAGVEI-KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N---GKSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 7 v~~ei~i-~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~---g~~~~~~kErl~~~D~~~~ 81 (152)
+..+..+ ++|++.+.+++. |...-++|.+. +.++++++-+....--+-.+.+. . -++. .+-.|-...|+++.
T Consensus 47 ~k~~~~~~d~s~~~~~~~~~-D~~~r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD-~V~~r~~~~~~~~~ 123 (207)
T cd08911 47 YKVYGSFDDVTARDFLNVQL-DLEYRKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRD-YVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh-CHHHHHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCcc-EEEEEEEEEcCCCC
Confidence 4454555 999999999997 78889999995 77888887532111122223222 1 1122 45445445666654
Q ss_pred eEE--EEEEeC-ccc-----cceeeEEEEEEEEecC----CCeEEEEEEEEEcC
Q 031834 82 KIT--FKVIEG-NLL-----DQYKSFCCFFQVTPKG----EGSFVTWTLKYEKP 123 (152)
Q Consensus 82 ~~~--y~i~eG-~~~-----~~~~~~~~~i~v~p~~----~gs~v~W~~~ye~~ 123 (152)
.+. ..-++- ..| -...+|.+.+.+.|.+ +||.+.++..-+++
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg 177 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG 177 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC
Confidence 421 111221 111 1256677888888872 47777766554443
No 60
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=76.95 E-value=18 Score=28.37 Aligned_cols=105 Identities=9% Similarity=0.048 Sum_probs=67.3
Q ss_pred EEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEEEEEe
Q 031834 11 VEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITFKVIE 89 (152)
Q Consensus 11 i~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~i~e 89 (152)
-.+..+++.+|+++. +.+...+..| ..++.++..-+. +-+.+-.|+.+ -+--. ...-+++ .++...+.+-. -+
T Consensus 74 rligysp~~my~vVS-~V~~Y~~FVP-wC~kS~V~~~~P-~~~~kA~LeVGFk~l~E-~y~S~Vt-~~~p~l~kt~~-~d 147 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVS-NVSEYHEFVP-WCKKSDVTSRRP-SGPLKADLEVGFKPLDE-RYTSNVT-CVKPHLTKTVC-AD 147 (227)
T ss_pred hhhCCCHHHHHHHHH-hHHHhhcccc-ceeccceeecCC-CCCceeeEEecCcccch-hheeeeE-EecccceEEee-cc
Confidence 357899999999996 7888999999 788888875431 22444445443 12111 2334433 45555554433 34
Q ss_pred CccccceeeEEEEEEEEecC---CCeEEEEEEEEEcCC
Q 031834 90 GNLLDQYKSFCCFFQVTPKG---EGSFVTWTLKYEKPN 124 (152)
Q Consensus 90 G~~~~~~~~~~~~i~v~p~~---~gs~v~W~~~ye~~~ 124 (152)
|.+ +......+++.|.. +.|.+...++||-..
T Consensus 148 ~rL---F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 148 GRL---FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ccH---HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 555 34445689999985 368999999999754
No 61
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=74.66 E-value=36 Score=26.07 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=63.1
Q ss_pred EEEEEEE-cCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C---CceeeEEEEEEEEEeCCCC
Q 031834 7 VEAGVEI-KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N---GKSDLSCKVIMEEIDYENN 81 (152)
Q Consensus 7 v~~ei~i-~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~---g~~~~~~kErl~~~D~~~~ 81 (152)
+..+..+ ++|++.+++++. |....++|-|. +..+++++--+ .--.|....+. . ..+. .+--|...-++...
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~-D~~~r~~Wd~~-~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RD-fV~~r~~~~~~~~~ 124 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLH-DPEYRKTWDSN-MIESFDICQLN-PNNDIGYYSAKCPKPLKNRD-FVNLRSWLEFGGEY 124 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHH-Chhhhhhhhhh-hceeEEEEEcC-CCCEEEEEEeECCCCCCCCe-EEEEEEEEeCCCEE
Confidence 3455555 699999999997 77788999995 76777765321 11233333333 1 1122 33333322222111
Q ss_pred eE-EEEEEeCccc--cce---eeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 82 KI-TFKVIEGNLL--DQY---KSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 82 ~~-~y~i~eG~~~--~~~---~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
.+ ..++.--..+ .+| ..+.+-+.+.|.+ ++|.++|....++.+.
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 21 1122111122 111 2344556778874 5799999999998875
No 62
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=73.53 E-value=37 Score=25.69 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=66.5
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee--CC--ceeeEEEEEEEEEeCCCCe
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA--NG--KSDLSCKVIMEEIDYENNK 82 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~--~g--~~~~~~kErl~~~D~~~~~ 82 (152)
+..+..|+++++++++.+. +. -++|.+. +.++++++--+.. =.|-...+. -+ ++. .+--|....+.++..
T Consensus 46 ~K~~~~v~a~~~~v~~~l~-d~--r~~Wd~~-~~~~~vie~id~~-~~i~y~~~~~p~pv~~RD-fV~~r~~~~~~~~g~ 119 (197)
T cd08869 46 WRASTEVEAPPEEVLQRIL-RE--RHLWDDD-LLQWKVVETLDED-TEVYQYVTNSMAPHPTRD-YVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEeCCCHHHHHHHHH-HH--Hhccchh-hheEEEEEEecCC-cEEEEEEeeCCCCCCCce-EEEEEEEEecCCCCc
Confidence 4778899999999999886 33 3899995 7788887632111 122222222 11 222 444444444444432
Q ss_pred E--EEEEEeC--ccccc---eeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 83 I--TFKVIEG--NLLDQ---YKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 83 ~--~y~i~eG--~~~~~---~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
+ ...-++- ..+.+ ...+.+-+.++|.+ ++|.+++.+..++.+.
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 2 2222321 12111 23455677888985 5799999999999875
No 63
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=63.95 E-value=62 Score=24.58 Aligned_cols=116 Identities=7% Similarity=-0.068 Sum_probs=65.5
Q ss_pred eEEEEEEE-cCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcC-CCCcEEEEEee---C-CceeeEEEEEEEEEe-C
Q 031834 6 QVEAGVEI-KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWG-KAGSVIFGRYA---N-GKSDLSCKVIMEEID-Y 78 (152)
Q Consensus 6 ~v~~ei~i-~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~-~~Gsvr~~~~~---~-g~~~~~~kErl~~~D-~ 78 (152)
.+....++ ++|++.+++++. |....++|.+. +.+.++++-+.. +. .|-.+.+. . .++. ++--|-.-.| +
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~-D~~~r~~Wd~~-~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD-~V~~r~~~~~~~ 126 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYW-DDEYRKKWDET-VIEHETLEEDEKSGT-EIVRWVKKFPFPLSDRE-YVIARRLWESDD 126 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHc-ChhhHhhhhhh-eeeEEEEEecCCCCc-EEEEEEEECCCcCCCce-EEEEEEEEEcCC
Confidence 35556667 679999999997 77789999995 777777764431 11 22222222 1 1122 4433323233 2
Q ss_pred CCCeEEEEEEeC-ccc----cceeeEEEEEEEEec--CC-CeEEEEEEEEEcCCC
Q 031834 79 ENNKITFKVIEG-NLL----DQYKSFCCFFQVTPK--GE-GSFVTWTLKYEKPNE 125 (152)
Q Consensus 79 ~~~~~~y~i~eG-~~~----~~~~~~~~~i~v~p~--~~-gs~v~W~~~ye~~~~ 125 (152)
....+....+.- ..+ .....|.+.+.+.|. ++ +|.+..+..-++.+.
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~ 181 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG 181 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC
Confidence 222222222222 111 135677888889997 44 677888887776443
No 64
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=52.17 E-value=79 Score=22.07 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=55.8
Q ss_pred EEEEEcCCHHHHHHHhhhcccc-ccccCCCceeEEEEEeCCcCCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEEEE
Q 031834 9 AGVEIKAPASTVREYFCSKLHH-VSSACPDKVQSVDLLEGEWGKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKV 87 (152)
Q Consensus 9 ~ei~i~a~a~kvw~~~~~~~~~-lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 87 (152)
.+..+++||+.+|+.+.+..-. +.+.-...+..-++ +| .--.=+++++ . ..+=+|+.+ ..++.|.+++
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G------~~Y~K~~~~~--~-~~~v~It~~-~~~~~Y~~~~ 71 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KG------FSYQKKFKNK--R-EAKVKITEY-EPNKRYAATF 71 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CC------cEEEEEcCCC--C-EEEEEEEEE-cCCCEEEEEE
Confidence 4566899999999998742211 33222221111112 22 1111122233 2 455557766 5677787777
Q ss_pred EeCccccceeeEEEEEEEEecCCC-eEEEEEEEEEcCC
Q 031834 88 IEGNLLDQYKSFCCFFQVTPKGEG-SFVTWTLKYEKPN 124 (152)
Q Consensus 88 ~eG~~~~~~~~~~~~i~v~p~~~g-s~v~W~~~ye~~~ 124 (152)
..-. ..+..+-++.|.++| |.|+.+=+++..+
T Consensus 72 ~s~~-----~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 72 SSSR-----GTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EecC-----CCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 6432 334566688888776 8888887777543
No 65
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=44.89 E-value=1.3e+02 Score=22.58 Aligned_cols=41 Identities=12% Similarity=-0.044 Sum_probs=33.3
Q ss_pred eEEEEEEEcCCHHHHHHHhhhc-cccccccCCCceeEEEEEeC
Q 031834 6 QVEAGVEIKAPASTVREYFCSK-LHHVSSACPDKVQSVDLLEG 47 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~-~~~lp~~~P~~v~s~~~~eG 47 (152)
.+..+..|+++++++.+.+.+. ....++|-+. +.++++++.
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~-~~~~~~le~ 88 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKS-LKHYEVLEK 88 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCcccccccccc-ccceEEEEE
Confidence 3677888999999999998731 5667899995 889999875
No 66
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=41.67 E-value=58 Score=24.90 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=41.8
Q ss_pred cCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CCceeeEEEEEEEEEeCCCCeEEEEEEeCcc
Q 031834 14 KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NGKSDLSCKVIMEEIDYENNKITFKVIEGNL 92 (152)
Q Consensus 14 ~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~i~eG~~ 92 (152)
+.+..|+|+ |.++-+.--|..| .+.|.. +|.. ....+++. ++.-. +.=+-|..+|.....|.|++-|-++
T Consensus 4 ~i~v~K~W~----d~~n~~~~RP~sI-~v~L~~-ng~~--~~~~~~l~~~n~W~-~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 4 NLSGTKIWD----DYDDKFKKRPAKI-SVQLLA-NGEK--YVKIVTVTKDNNWK-YEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEC----CCCCCCCCCCCEE-EEEEEe-CCee--eeeEEEecCCCCeE-EEEcCCCcccCCCCEEEEEEEeecC
Confidence 344567776 2334456667544 456653 2211 34556665 33211 2335566778788999999999877
Q ss_pred cc
Q 031834 93 LD 94 (152)
Q Consensus 93 ~~ 94 (152)
+.
T Consensus 75 ~~ 76 (187)
T cd00222 75 PD 76 (187)
T ss_pred CC
Confidence 63
No 67
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=41.15 E-value=1.5e+02 Score=21.96 Aligned_cols=117 Identities=12% Similarity=-0.039 Sum_probs=66.7
Q ss_pred eEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-CC-c---eeeEEEEEEEEEeC-C
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NG-K---SDLSCKVIMEEIDY-E 79 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~g-~---~~~~~kErl~~~D~-~ 79 (152)
.+..+..++++++++...+..|....++|.+. +.++++++-.. .-..|..+.+. .. + +. .+--|-...++ .
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~-~~~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RD-fv~~r~~~~~~~~ 122 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDLRYRPEWDKN-VAKAETLEVID-NGTVIYHYVSKFVAGPVSPRD-FVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhcccchhhCchh-cccEEEEEEEC-CCCeEEEEEEecccCcCCCCe-EEEEEEEEEcCCC
Confidence 45667788899998665444588889999995 88888876321 11355554443 11 1 12 33222222222 2
Q ss_pred CCeEEEEEEeCc-cc--c---ceeeEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 031834 80 NNKITFKVIEGN-LL--D---QYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 125 (152)
Q Consensus 80 ~~~~~y~i~eG~-~~--~---~~~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~ 125 (152)
...+...-++.+ .+ . .-..+.+-+.+.|.++ .|.++|....++.+.
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~ 175 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW 175 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC
Confidence 223333222222 11 1 1234566778888755 599999999999875
No 68
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=40.71 E-value=1.6e+02 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.7
Q ss_pred EEEEEEEEEeCCCCeEEEEEEeCccc
Q 031834 68 SCKVIMEEIDYENNKITFKVIEGNLL 93 (152)
Q Consensus 68 ~~kErl~~~D~~~~~~~y~i~eG~~~ 93 (152)
.+||-+--+++.+..+.|.+-++.+-
T Consensus 49 kvKE~~~~ynp~~~~~~Y~is~~~l~ 74 (178)
T PF02087_consen 49 KVKEALYHYNPKNKTYFYDISESKLE 74 (178)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEeeeeecc
Confidence 79999999999999999999877654
No 69
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=40.41 E-value=47 Score=24.78 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=34.7
Q ss_pred CcEEEEEeeCCceeeEEEEEEEEEeCCCCeEEEEEEeCccc-cceeeEEEEEEEEecCCCeEEEEE-EEEEcCC
Q 031834 53 GSVIFGRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNLL-DQYKSFCCFFQVTPKGEGSFVTWT-LKYEKPN 124 (152)
Q Consensus 53 Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eG~~~-~~~~~~~~~i~v~p~~~gs~v~W~-~~ye~~~ 124 (152)
|..+.|-.+-|+.. .-.++..++--+.|.+.|.-+||.++ .+| |.|+++.|- ..|++..
T Consensus 50 GVL~SWAvPkGPs~-dp~~kRLAv~~EDHpl~Y~~FEG~IP~g~Y------------GaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVPKGPSL-DPADKRLAVHVEDHPLDYADFEGTIPKGEY------------GAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcCcCCCC-CcccceeeeEccCccchhccccccccCCcc------------CCccEEEEeCceEEeCC
Confidence 56666666633322 23444556767777777777777665 333 346777775 5666654
No 70
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=37.45 E-value=1.8e+02 Score=22.08 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=62.9
Q ss_pred eEEEEEEEc-CCHHHHHHHhhhccccccccCCCceeEEEEEeCCcCCCCcEEEEEee-C---CceeeEE--EEEEEEEeC
Q 031834 6 QVEAGVEIK-APASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N---GKSDLSC--KVIMEEIDY 78 (152)
Q Consensus 6 ~v~~ei~i~-a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eGdg~~~Gsvr~~~~~-~---g~~~~~~--kErl~~~D~ 78 (152)
.+..+..++ ++++.+++++. |....++|.+. +.++.-.+.++ -.|-.+.+. . .++. .+ +.+ ..+|.
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~-D~~~r~~Wd~~-~~~~~~~~~~~---~~i~y~~~k~PwPvs~RD-~V~~r~~-~~~~~ 122 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYM-DLEYRKQWDQY-VKELYEKECDG---ETVIYWEVKYPFPLSNRD-YVYIRQR-RDLDV 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHh-CHHHHHHHHHH-HHhheeecCCC---CEEEEEEEEcCCCCCCce-EEEEEEe-ccccC
Confidence 345566777 79999999997 78889999996 44432112222 123333332 1 1122 33 233 34554
Q ss_pred CCCeEEE---EEEeCc-cc-----cceeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 79 ENNKITF---KVIEGN-LL-----DQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 79 ~~~~~~y---~i~eG~-~~-----~~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
.+..+.. ...+-+ .| -....|.+.+.++|.+ ++|.+.+...-++.+.
T Consensus 123 ~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~ 179 (207)
T cd08910 123 EGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM 179 (207)
T ss_pred CCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc
Confidence 5442211 111111 11 1246677888888875 4788988888887554
No 71
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=33.89 E-value=1.9e+02 Score=21.42 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=42.2
Q ss_pred EEEEEeCccc--cceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHHhhhc
Q 031834 84 TFKVIEGNLL--DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLI 149 (152)
Q Consensus 84 ~y~i~eG~~~--~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll 149 (152)
.|.|-||.+. ..+.+-+..|=+.+..|.+-+...+.=++......-++-+...+..+-|.+..|=+
T Consensus 3 ~Y~i~EG~l~lP~~w~DrSvNvf~~~~~gt~~~sfvIsRd~~~~g~~~~~y~~rql~~l~k~Lpgy~~ 70 (147)
T COG5435 3 TYQIQEGTLELPAAWQDRSVNVFVSGDNGTSGFSFVISRDPLEPGDTFPEYVQRQLALLRKQLPGYEL 70 (147)
T ss_pred eeEeeeeeEcCcchhccceEEEEEecCCCcceeEEEEecCCCCCCCcHHHHHHHHHHHHHhhCCCeEE
Confidence 5999999753 67777766666655544445566666666655555455555566666677766643
No 72
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=31.81 E-value=37 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=19.0
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHhhh
Q 031834 121 EKPNENVPEPAAMLQLCVDVTKDVATKL 148 (152)
Q Consensus 121 e~~~~~~~~p~~~~~~~~~~~k~ie~yl 148 (152)
||.+++..-|+.+++.+..+++.||..|
T Consensus 104 eP~d~D~~~p~~~v~~~~~~l~ele~~L 131 (132)
T PF08868_consen 104 EPVDKDAEFPEKWVDKGEELLKELEDEL 131 (132)
T ss_dssp ----T-B-EEHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3444455557889999999999999876
No 73
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=29.40 E-value=1.2e+02 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=25.7
Q ss_pred EEeeCCceeeEEEEEEEEEeCCCCeEEEEEEeCccc
Q 031834 58 GRYANGKSDLSCKVIMEEIDYENNKITFKVIEGNLL 93 (152)
Q Consensus 58 ~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eG~~~ 93 (152)
++|..|... .++++...+|..+.-..-..++|.+|
T Consensus 94 v~F~tGe~l-~itq~~~GlD~~~~L~~d~~i~G~vP 128 (192)
T PF07474_consen 94 VEFATGERL-TITQTARGLDSDGYLLLDTVISGQVP 128 (192)
T ss_dssp EEESSS--E-EEEEEEEEE-TTS-EEEEEEEEEEE-
T ss_pred EEEeCCCEE-EEEEEecccCCCCcEEEEEEEeccCC
Confidence 667656555 89999999999999888888999876
No 74
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=27.27 E-value=2.5e+02 Score=20.44 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=51.5
Q ss_pred eEEEEEEEcCCHHHHHHHhhhcccc-ccccCCCceeEEEEEeCCcCCCCcEEEE-EeeCCceeeEEEEEEEEEeCCCCeE
Q 031834 6 QVEAGVEIKAPASTVREYFCSKLHH-VSSACPDKVQSVDLLEGEWGKAGSVIFG-RYANGKSDLSCKVIMEEIDYENNKI 83 (152)
Q Consensus 6 ~v~~ei~i~a~a~kvw~~~~~~~~~-lp~~~P~~v~s~~~~eGdg~~~Gsvr~~-~~~~g~~~~~~kErl~~~D~~~~~~ 83 (152)
+++.++..+-+.+.+-.++. |+.- +|+++| .+++++. +|+ +-+-- .| .+..- .++=+ .-+...+=+|
T Consensus 2 ~~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p-~ik~v~~-~~~-----sF~~~g~~-~~~~~-~~~G~-vy~s~~~ItY 70 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILS-DPEFVLPRLFP-PIKSVKV-EEN-----SFRAEGKF-GGFPF-EMKGN-VYVSSNEITY 70 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT--HHHHHHHHST-TEEEEE--STT-----EEEEEEEE-TTEEE-EEEEE-EEEETTEEEE
T ss_pred eEEEEeccCCChHheEEEec-CCccEecccCC-ceEEEEe-cCC-----EEEEEEEE-eeEEE-EEEEE-EEEccceEEE
Confidence 35678888889999999997 5555 999999 5999984 443 22210 12 22222 34444 2244455566
Q ss_pred EEEEEeCccccceeeEEEEEEEEecCCCeEEEEEEEEEc
Q 031834 84 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 122 (152)
Q Consensus 84 ~y~i~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~ 122 (152)
.|.+..|+.. .+=+.+++.. ++ .++-.++||-
T Consensus 71 vf~~~~g~~~---g~GkL~i~~~---~~-~i~l~~eyeg 102 (136)
T PF11485_consen 71 VFNLAGGGPN---GNGKLTIQLE---NG-KIKLIFEYEG 102 (136)
T ss_dssp EEE----ETT---EEEEEEEEEE---TT-EEEEEEEES-
T ss_pred EEEeeccCCC---CcEEEEEEec---CC-EEEEEEEccc
Confidence 6666666332 1112344442 23 5777788874
No 75
>COG4933 Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=73 Score=22.81 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=23.4
Q ss_pred CCcceeEEEEEEEcCCHHHHHHHhh
Q 031834 1 MSLTGQVEAGVEIKAPASTVREYFC 25 (152)
Q Consensus 1 m~~~~~v~~ei~i~a~a~kvw~~~~ 25 (152)
||+.|.++.+....+++...|+..+
T Consensus 43 ~aVvGef~~e~V~~~~~~siw~~~~ 67 (124)
T COG4933 43 KAVVGEFTAERVEQVAIESIWRKAG 67 (124)
T ss_pred hheEEEEEeeeEEEcchHHHHHHhc
Confidence 6889999999999999999999987
No 76
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=24.63 E-value=3.2e+02 Score=23.22 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=33.8
Q ss_pred EeCccccceeeEEEEEEEEecCCCeEEEEEEEEEcCCCCC---C-ChHHH----HHHHHHHHHHHHhhh
Q 031834 88 IEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENV---P-EPAAM----LQLCVDVTKDVATKL 148 (152)
Q Consensus 88 ~eG~~~~~~~~~~~~i~v~p~~~gs~v~W~~~ye~~~~~~---~-~p~~~----~~~~~~~~k~ie~yl 148 (152)
|+|-.+....+++..-...-++++-.++||--|....+.. + +|.+. .+.+..+..++..||
T Consensus 239 IDg~slegv~s~ri~~~~~~~~~~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL 307 (356)
T PF11979_consen 239 IDGKSLEGVPSVRIFQGSEYKANGKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHL 307 (356)
T ss_pred CCCceecCceeeeecccceeecCCeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3443334444444432222334577899999999887765 1 24444 334455556666665
No 77
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.74 E-value=4.4e+02 Score=24.53 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=34.8
Q ss_pred EEEcCCHHHHHHHhhhcccccc--ccCCCceeEEEEEeCCc----CCCCcEEEEEeeCCceeeEEEEEEEEEeCCCCeEE
Q 031834 11 VEIKAPASTVREYFCSKLHHVS--SACPDKVQSVDLLEGEW----GKAGSVIFGRYANGKSDLSCKVIMEEIDYENNKIT 84 (152)
Q Consensus 11 i~i~a~a~kvw~~~~~~~~~lp--~~~P~~v~s~~~~eGdg----~~~Gsvr~~~~~~g~~~~~~kErl~~~D~~~~~~~ 84 (152)
.-+.++|||-=++++. ...+. +-|-+.|....++.+.+ +.-|+||.|... | . .+.|. .-..+..|+
T Consensus 153 ~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g--e-~l~~~---~ghtn~vYs 224 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G--E-VLLEM---HGHTNFVYS 224 (745)
T ss_pred cEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C--c-eeeee---eccceEEEE
Confidence 3456777764444431 11111 12333444444443310 134899999985 4 2 44444 446777777
Q ss_pred EEE
Q 031834 85 FKV 87 (152)
Q Consensus 85 y~i 87 (152)
+++
T Consensus 225 is~ 227 (745)
T KOG0301|consen 225 ISM 227 (745)
T ss_pred EEe
Confidence 773
No 78
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=21.29 E-value=1.5e+02 Score=19.33 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=30.0
Q ss_pred EEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeC
Q 031834 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (152)
Q Consensus 7 v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eG 47 (152)
-..++.+....+.||+.++.-|....+--++.+-.+++..|
T Consensus 37 ~~~sT~l~G~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 37 DHYSTQLRGDEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp ETTEEEEECBHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred cccEEEEECCHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 34567789999999999997666655556666777776554
No 79
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=20.48 E-value=1.4e+02 Score=20.97 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=23.9
Q ss_pred cccccCCCceeEEEEEeC-C-cCCCCcEEEEEeeCCceeeEEEEE
Q 031834 30 HVSSACPDKVQSVDLLEG-E-WGKAGSVIFGRYANGKSDLSCKVI 72 (152)
Q Consensus 30 ~lp~~~P~~v~s~~~~eG-d-g~~~Gsvr~~~~~~g~~~~~~kEr 72 (152)
-.|+-+- .|-++-+.|| + +..+.=|-.||.+||... .+||=
T Consensus 16 F~P~sV~-afG~~ViaEG~~~~~~~yWVHaWTV~dGiIT-qlREY 58 (109)
T PF07107_consen 16 FVPRSVD-AFGSTVIAEGCDETRSVYWVHAWTVKDGIIT-QLREY 58 (109)
T ss_pred EeccEEE-EECCEEEEecccCcCcEEEEEEEEecCCEEE-eeeee
Confidence 3444443 3567777888 3 335556777888888443 44443
No 80
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=20.43 E-value=4.1e+02 Score=20.45 Aligned_cols=115 Identities=8% Similarity=0.035 Sum_probs=68.7
Q ss_pred eeEEEEEEEcCCHHHHHHHhhhccccccccCCCceeEEEEEeC-CcCCCCcEEEE-Eee-CC-ceeeEEEEEEEEEeCCC
Q 031834 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG-EWGKAGSVIFG-RYA-NG-KSDLSCKVIMEEIDYEN 80 (152)
Q Consensus 5 ~~v~~ei~i~a~a~kvw~~~~~~~~~lp~~~P~~v~s~~~~eG-dg~~~Gsvr~~-~~~-~g-~~~~~~kErl~~~D~~~ 80 (152)
..+..+++++++++++.+.+-++ .++|.+. +.+.++++- +. ..--++.. ... .. ++. .+.-|.-..|..+
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~-~~~I~Yy~~~~PwP~~~RD-~V~~Rs~~~~~~~ 125 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDS-QTEIYQYVQNSMAPHPARD-YVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCC-CceEEEEEccCCCCCCCcE-EEEEEEEEEeCCC
Confidence 45678899999999999999744 6899996 666666653 22 11111111 111 11 223 5555555445555
Q ss_pred CeEEEEEEeCc---cc-c--ceeeEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031834 81 NKITFKVIEGN---LL-D--QYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 125 (152)
Q Consensus 81 ~~~~y~i~eG~---~~-~--~~~~~~~~i~v~p~~-~gs~v~W~~~ye~~~~ 125 (152)
..+.-...... +| . ....+.+-+.++|.+ ++|.++..+..++.+.
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 55433333222 22 1 133456677888986 5799999999998775
No 81
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=20.34 E-value=2.9e+02 Score=22.26 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=28.0
Q ss_pred eeEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 031834 97 KSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVA 145 (152)
Q Consensus 97 ~~~~~~i~v~p~~~-gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie 145 (152)
..++++++-++.|+ .+.++|++.|...+- ++|...++++++
T Consensus 92 NyikGtV~pvpgGg~~g~as~Kl~F~~GG~--------ieFgq~~l~~~s 133 (261)
T KOG3294|consen 92 NYIKGTVQPVPGGGWEGEASFKLTFNEGGC--------IEFGQLLLQAAS 133 (261)
T ss_pred ceeeeeEeecCCCCccceeEEEEEecCCCc--------hhHHHHHHHHHH
Confidence 33678888887766 567999999987653 445555555544
Done!