BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031835
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49627|ISU1_ARATH Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana
GN=ISU1 PE=2 SV=1
Length = 167
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/132 (68%), Positives = 104/132 (78%), Gaps = 13/132 (9%)
Query: 1 MLRLGSKRLL----RQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDAT 56
ML+ +K+ L RQ+T +V + R YHENVIDHY+NPRNVGSF+KND
Sbjct: 2 MLKQAAKKALGLTSRQSTPWSVG---------ILRTYHENVIDHYDNPRNVGSFDKNDPN 52
Query: 57 VGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEV 116
VGTGLVGAPACGDVMKLQIKVDE+TGQIVDA FKTFGCGSAIASSSVATEWVKGK M++V
Sbjct: 53 VGTGLVGAPACGDVMKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDV 112
Query: 117 LSIKNTGVAGKL 128
L+IKNT +A L
Sbjct: 113 LTIKNTEIAKHL 124
>sp|O81433|ISU3_ARATH Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana
GN=ISU3 PE=2 SV=1
Length = 171
Score = 169 bits (427), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 97/123 (78%), Gaps = 4/123 (3%)
Query: 9 LLRQATAAA---VAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAP 65
+LRQ T A +A+ P + RLYH NVIDHY+NPRNVGSF+KND VGTGLVGAP
Sbjct: 1 MLRQTTKRAFLGLASQNPTPFPVVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAP 60
Query: 66 ACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVA 125
CGDVMKLQ+K D +GQI+DA FKTFGCGSAIA+SSVATEWVKGK ++EVL+IKN+ +A
Sbjct: 61 QCGDVMKLQVKFD-GSGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQIA 119
Query: 126 GKL 128
L
Sbjct: 120 KHL 122
>sp|Q9D7P6|ISCU_MOUSE Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus
musculus GN=Iscu PE=1 SV=1
Length = 168
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Query: 5 GSKRLLRQATAAAVAAPR-PVQVAAMP-RLYHENVIDHYNNPRNVGSFEKNDATVGTGLV 62
G+ RL R A+A + +PR P + + P RLYH+ V+DHY NPRNVGS +K VGTGLV
Sbjct: 6 GAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLV 65
Query: 63 GAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
GAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT
Sbjct: 66 GAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124
Query: 123 GVAGKL 128
+A +L
Sbjct: 125 DIAKEL 130
>sp|Q9H1K1|ISCU_HUMAN Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo
sapiens GN=ISCU PE=1 SV=2
Length = 167
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 102/130 (78%), Gaps = 3/130 (2%)
Query: 1 MLRLGSKRLLRQATAAAVAAPR-PVQVAAMP-RLYHENVIDHYNNPRNVGSFEKNDATVG 58
M G+ RL R A+A + +PR P + + P RLYH+ V+DHY NPRNVGS +K VG
Sbjct: 1 MAAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG 60
Query: 59 TGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS 118
TGLVGAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+
Sbjct: 61 TGLVGAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALT 119
Query: 119 IKNTGVAGKL 128
IKNT +A +L
Sbjct: 120 IKNTDIAKEL 129
>sp|Q6BGU0|ISU1_DEBHA Iron sulfur cluster assembly protein 1, mitochondrial
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=ISU1 PE=3 SV=1
Length = 179
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 92/130 (70%), Gaps = 7/130 (5%)
Query: 6 SKRLLRQATAAAVAAPRPVQVAAMP-------RLYHENVIDHYNNPRNVGSFEKNDATVG 58
S+ LR A A A P +V MP RLYHE V+DHY+NPRNVG+ K D VG
Sbjct: 3 SRSFLRLANPARRAMPAVKRVNMMPSMALPTKRLYHEKVLDHYSNPRNVGTLNKLDVDVG 62
Query: 59 TGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS 118
TGLVGAPACGDVM+LQI+VD+ETG I D FKTFGCGSAIASSS TE VKGK ++E +
Sbjct: 63 TGLVGAPACGDVMRLQIQVDDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVK 122
Query: 119 IKNTGVAGKL 128
IKNT +A +L
Sbjct: 123 IKNTAIAKEL 132
>sp|P0ACD7|NIFU_SHIFL NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1
Length = 128
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEWVKGK + E +IKNT +A +L+
Sbjct: 62 GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE 98
>sp|P0ACD4|NIFU_ECOLI NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1
SV=1
Length = 128
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEWVKGK + E +IKNT +A +L+
Sbjct: 62 GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE 98
>sp|P0ACD5|NIFU_ECOL6 NifU-like protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nifU PE=3 SV=1
Length = 128
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEWVKGK + E +IKNT +A +L+
Sbjct: 62 GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE 98
>sp|P0ACD6|NIFU_ECO57 NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=1 SV=1
Length = 128
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEWVKGK + E +IKNT +A +L+
Sbjct: 62 GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE 98
>sp|Q9MAB6|ISU2_ARATH Iron-sulfur cluster assembly protein 2 OS=Arabidopsis thaliana
GN=ISU2 PE=2 SV=1
Length = 163
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Query: 9 LLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACG 68
+LRQ + A + + RLYHENVIDH+ NPRNVGSF +ND VGTGLVGAPACG
Sbjct: 3 MLRQTSRKAYLGLQASPLGLGRRLYHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACG 62
Query: 69 DVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
D+M LQIKVD ++GQI+D FKTFGCGSAIASSSVA+EW+KGK + EV++IKN +A L
Sbjct: 63 DLMSLQIKVD-DSGQIIDTRFKTFGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHL 121
Query: 129 Q 129
+
Sbjct: 122 R 122
>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=ISU1 PE=3 SV=1
Length = 181
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 85/119 (71%), Gaps = 3/119 (2%)
Query: 11 RQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDV 70
R T A ++ P+ ++ R YHE V+DHYNNPRNVGS KND VGTGLVGAPACGDV
Sbjct: 17 RPTTTAVMSPMTPLAISR--RGYHEKVLDHYNNPRNVGSMNKNDEDVGTGLVGAPACGDV 74
Query: 71 MKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
MKLQI+VD+ G I D FKTFGCGSAIASSS TE V+GK + E IKNT +A +L
Sbjct: 75 MKLQIRVDDN-GVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELS 132
>sp|O51885|NIFU_BUCAP NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nifU PE=3 SV=1
Length = 128
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y + V+DHY NPRNVGSF +D+ VG+GLVGAPACGDVMKLQIKV+E+ G I DACFKT+
Sbjct: 3 YSKKVMDHYENPRNVGSFSNSDSNVGSGLVGAPACGDVMKLQIKVNEQ-GIIEDACFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEW+KGK + E +IKNT + +L+
Sbjct: 62 GCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELE 98
>sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ISU1 PE=3
SV=1
Length = 180
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 86/117 (73%), Gaps = 3/117 (2%)
Query: 12 QATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVM 71
+ATA V + P +A R YH VIDHY NPRNVGS +KN VGTGLVGAPACGDVM
Sbjct: 33 RATAPTVGS-SPSMASA--RFYHPKVIDHYTNPRNVGSLDKNLPNVGTGLVGAPACGDVM 89
Query: 72 KLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
KLQI+V++ETG I + FKTFGCGSAIASSS TE V+GK +++ IKNT +A +L
Sbjct: 90 KLQIQVNDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIAREL 146
>sp|P57658|NIFU_BUCAI NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nifU PE=3 SV=1
Length = 127
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y + V+DHY NPRNVGSF D VG+GLVGAPACGDVMKLQIKV+E+ G I DACFKT+
Sbjct: 3 YSKKVMDHYENPRNVGSFSSTDLNVGSGLVGAPACGDVMKLQIKVNEK-GIIEDACFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEWVKGK ++E SIKNT + +L
Sbjct: 62 GCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELD 98
>sp|Q57074|NIFU_HAEIN NifU-like protein OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=nifU PE=1 SV=2
Length = 126
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGS +K D+ VGTG+VGAPACGDVM+LQIKVD + G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVD-DNGIIEDAKFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEWVKGK ++E +IKN+ +A +L+
Sbjct: 62 GCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELE 98
>sp|Q89A18|NIFU_BUCBP NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nifU PE=3 SV=1
Length = 126
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y + VIDHY NPRNVGSF+ DA VG+GLVGAPACGDVMKLQIKV+ + G I DACFKT+
Sbjct: 3 YSKKVIDHYENPRNVGSFKTIDANVGSGLVGAPACGDVMKLQIKVN-KNGIIQDACFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ TEW+KGK + E +IKNT +A +L
Sbjct: 62 GCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELD 98
>sp|Q75C07|ISU1_ASHGO Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=ISU1 PE=3 SV=1
Length = 154
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 82/120 (68%), Gaps = 4/120 (3%)
Query: 10 LRQATAAAVAAPRPV-QVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACG 68
RQ A V RPV + R YH VIDHY NPRNVG+ +K VGTGLVGAPACG
Sbjct: 4 FRQTATAIV---RPVGTIGYARRCYHPKVIDHYTNPRNVGTLDKKLTNVGTGLVGAPACG 60
Query: 69 DVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
DVM+LQI+VD+ TG I + FKTFGCGSAIASSS TE V+GK + + IKNT +A +L
Sbjct: 61 DVMRLQIQVDDSTGVIENVKFKTFGCGSAIASSSYMTELVRGKTLADAEKIKNTEIAREL 120
>sp|B0YLW7|ISU1_TRAHO Iron sulfur cluster assembly protein 1 OS=Trachipleistophora
hominis GN=ISU1 PE=3 SV=1
Length = 138
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
YH +VIDH+ NPRNVGS++K+ VGTGLVGAPACGDVMKLQIKV+ + I DA F+TF
Sbjct: 15 YHSSVIDHFENPRNVGSYDKSANDVGTGLVGAPACGDVMKLQIKVENDI--IKDAKFRTF 72
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
GCGSAIASSS+ATEW+KGK + + L I N +A KL
Sbjct: 73 GCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKL 108
>sp|Q12056|ISU2_YEAST Iron sulfur cluster assembly protein 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ISU2 PE=1 SV=1
Length = 156
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 79/102 (77%)
Query: 28 AMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDA 87
A RLYH VIDHY NPRNVGS +K+ A VGTG+VGAPACGDV+KLQI+V++++G I +
Sbjct: 22 AAKRLYHPKVIDHYTNPRNVGSMDKSLANVGTGIVGAPACGDVIKLQIQVNDKSGIIENV 81
Query: 88 CFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
FKTFGCGSAIASSS TE V+G + E + IKNT +A +L
Sbjct: 82 KFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELS 123
>sp|Q03020|ISU1_YEAST Iron sulfur cluster assembly protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ISU1 PE=1 SV=1
Length = 165
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 74/99 (74%)
Query: 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFK 90
RLYH VI+HY +PRNVGS +K VGTGLVGAPACGDVM+LQIKV++ TG I D FK
Sbjct: 33 RLYHPKVIEHYTHPRNVGSLDKKLPNVGTGLVGAPACGDVMRLQIKVNDSTGVIEDVKFK 92
Query: 91 TFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
TFGCGSAIASSS TE V+G + + IKNT +A +L
Sbjct: 93 TFGCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELS 131
>sp|Q9ZD61|NIFU_RICPR NifU-like protein OS=Rickettsia prowazekii (strain Madrid E)
GN=nifU PE=3 SV=1
Length = 131
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 76/97 (78%), Gaps = 3/97 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKV-DEETGQIVDACFKT 91
Y + VIDHY NPRNVGS +K VGTGLVGAPACGDVMKLQI+V D+E I DA FKT
Sbjct: 3 YSKKVIDHYENPRNVGSLDKKKKNVGTGLVGAPACGDVMKLQIEVGDDEI--ITDAKFKT 60
Query: 92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
FGCGSAIASSS+ TEW+KGK +++ IKNT +A +L
Sbjct: 61 FGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKEL 97
>sp|Q8SSM2|ISU1_ENCCU Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ISU1 PE=3 SV=1
Length = 140
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y +V+DH+ NPRNVGS +K D VGTG+VGAPACGDVMKLQIKV ++ I DA FKTF
Sbjct: 14 YDSSVVDHFENPRNVGSLDKTDPRVGTGMVGAPACGDVMKLQIKVGKDN-VIEDAKFKTF 72
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
GCGSAIASSS+ATEW+K K + E L I N +A KL
Sbjct: 73 GCGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLS 109
>sp|Q9UTC6|ISU1_SCHPO Iron sulfur cluster assembly protein 1, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=isu1 PE=1 SV=1
Length = 192
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFK 90
R+YH+NV+DHYNNPRNVG+ K D VG GLVGAPACGDVM+L I+V+++ G I D FK
Sbjct: 52 RMYHKNVLDHYNNPRNVGTLPKGDPDVGIGLVGAPACGDVMRLAIRVNKD-GVIEDVKFK 110
Query: 91 TFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
TFGCGSAIASSS T VKG ++E IKNT +A +L
Sbjct: 111 TFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKEL 148
>sp|Q6FJY3|ISU1_CANGA Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=ISU1 PE=3 SV=1
Length = 213
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 74/99 (74%)
Query: 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFK 90
R+YH VI+HY +PRNVGS +K VGTGLVGAPACGDVM+LQIKV+++TG I D FK
Sbjct: 81 RMYHPKVIEHYTHPRNVGSMDKTLPNVGTGLVGAPACGDVMRLQIKVNDKTGVIEDVKFK 140
Query: 91 TFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQ 129
TFGCGSAIASSS TE V G + + IKNT +A +L
Sbjct: 141 TFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELS 179
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein NifU OS=Azotobacter vinelandii GN=nifU
PE=3 SV=2
Length = 312
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E V +H+ NP+N G+ E +A G VG+ +CGD ++L +KVD ET I+DA F+TF
Sbjct: 4 YSEKVKEHFYNPKNAGAVEGANAI---GDVGSLSCGDALRLTLKVDPETDVILDAGFQTF 60
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQNI 131
GCGSAIASSS TE VKG + E L I N +A L +
Sbjct: 61 GCGSAIASSSALTEMVKGLTLDEALKISNQDIADYLDGL 99
>sp|P23121|NIFU_AZOCH Nitrogen fixation protein NifU OS=Azotobacter chroococcum mcd 1
GN=nifU PE=3 SV=1
Length = 309
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E V +H+ NP+N G+ E +A G VG+ +CGD ++L +KVD ET I+DA F+TF
Sbjct: 4 YSEKVKEHFYNPKNAGAVEGANAI---GDVGSLSCGDRLRLTLKVDPETDVILDAGFQTF 60
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVA 125
GCGSAIASSS TE VKG + + L I N +A
Sbjct: 61 GCGSAIASSSALTEMVKGADLDDALKISNRDIA 93
>sp|O67045|NIFU_AQUAE NifU-like protein OS=Aquifex aeolicus (strain VF5) GN=nifU PE=1
SV=1
Length = 157
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y+E V+DH+ NPRNVG E DA G G G PACGD M IKV+ E I D FKTF
Sbjct: 5 YNEKVLDHFLNPRNVGVLE--DAN-GVGQCGNPACGDAMLFTIKVNPENDVIEDVRFKTF 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSI 119
GCGSAIA SS+ TE VKGK +Q L++
Sbjct: 62 GCGSAIAVSSMLTEMVKGKPIQYALNL 88
>sp|P20628|NIFU_NOSS1 Nitrogen fixation protein NifU OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=nifU PE=3 SV=1
Length = 300
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKND---ATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACF 89
Y + V++ + +P+N G E+N V TG VG+ ACGD ++L IKV+ E+ +IVD+ F
Sbjct: 4 YTDKVLELFYDPKNQGVIEENGEPGVKVATGEVGSIACGDALRLHIKVEVESDKIVDSRF 63
Query: 90 KTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
+TFGC SAIASSS TE +KG + E L + N +A L
Sbjct: 64 QTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYL 102
>sp|Q43885|NIFU_TRIAZ Nitrogen fixation protein NifU OS=Trichormus azollae GN=nifU PE=3
SV=1
Length = 300
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKND---ATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACF 89
Y + V++ + +P+N G E N V TG VG+ ACGD ++L IKV+ E+ +IVD+ F
Sbjct: 4 YTDKVLELFYDPKNQGVIEDNGEPGVKVATGEVGSIACGDALRLHIKVEVESDKIVDSRF 63
Query: 90 KTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
+TFGC SAIASSS TE +KG + E L + N +A L
Sbjct: 64 QTFGCTSAIASSSALTEMIKGLTLDEALKVSNKDIADYL 102
>sp|P05343|NIFU_KLEPN Nitrogen fixation protein NifU OS=Klebsiella pneumoniae GN=nifU
PE=3 SV=2
Length = 274
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E V DH+ NPRN + +A G VG+ +CGD ++L ++VD ++ I +A F+TF
Sbjct: 4 YSEKVKDHFFNPRNARVVDNANAV---GDVGSLSCGDALRLMLRVDPQSEIIEEAGFQTF 60
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQNI 131
GCGSAIASSS TE + G + E I N +A L +
Sbjct: 61 GCGSAIASSSALTELIIGHTLAEAGQITNQQIADYLDGL 99
>sp|Q43909|NIFU_AZOBR Nitrogen fixation protein NifU OS=Azospirillum brasilense GN=nifU
PE=3 SV=2
Length = 310
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y + V +H+ NP+N G+ ++ D G VG+ CGD +KL +KV+ + DA F+TF
Sbjct: 4 YTDKVKEHFFNPKNAGALDEAD---DVGEVGSITCGDALKLMMKVNPDQPGHRDANFQTF 60
Query: 93 GCGSAIAS-SSVATEWVKGKQMQEVL 117
GCGSAIAS S TE + GK + E L
Sbjct: 61 GCGSAIASLRSALTEMIIGKTVDEAL 86
>sp|O32163|NIFU_BACSU NifU-like protein OS=Bacillus subtilis (strain 168) GN=nifU PE=1
SV=1
Length = 147
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 8/94 (8%)
Query: 27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIV- 85
A + LY + ++DHY NPRN G ND+ V + P CGD ++L +K+D G IV
Sbjct: 5 ANLDTLYRQVIMDHYKNPRNKGVL--NDSIVVD--MNNPTCGDRIRLTMKLD---GDIVE 57
Query: 86 DACFKTFGCGSAIASSSVATEWVKGKQMQEVLSI 119
DA F+ GC ++AS+S+ T+ +KGK ++ LS+
Sbjct: 58 DAKFEGEGCSISMASASMMTQAIKGKDIETALSM 91
>sp|Q1AWB1|MNMA_RUBXD Bifunctional protein NifU/MnmA OS=Rubrobacter xylanophilus (strain
DSM 9941 / NBRC 16129) GN=nifU/mnmA PE=3 SV=1
Length = 488
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 29 MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDAC 88
MP Y VI+H NPRN G G G G ACGD ++ ++V + ++ +
Sbjct: 1 MPERYGPRVIEHLVNPRNAGEV---GGPSGVGEAGNAACGDQVRFTLRVGGDL-RLQEVR 56
Query: 89 FKTFGCGSAIASSSVATEWVKGKQM 113
++ +GC + IA+ S E +G+ +
Sbjct: 57 YRAYGCAACIAAGSALAELAEGRSI 81
>sp|Q01180|NIFU_RHOSH Nitrogen fixation protein NifU OS=Rhodobacter sphaeroides GN=nifU
PE=3 SV=1
Length = 246
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 36 NVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCG 95
+D + NPRN G E DA G G+ GD ++L +++ E G++ +A F FG
Sbjct: 7 KALDLFFNPRNAGPLEAADAV---GTAGSLEVGDAIRLMLRI--EAGRVAEARFLAFGGA 61
Query: 96 SAIASSSVATEWVKG 110
AIA S T V G
Sbjct: 62 HAIACGSALTVLVTG 76
>sp|Q1RJQ6|Y327_RICBR Putative peptidyl-prolyl cis-trans isomerase RBE_0327 OS=Rickettsia
bellii (strain RML369-C) GN=RBE_0327 PE=4 SV=1
Length = 328
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 56 TVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGS 96
T+GTG VG +CG V+ + ++ + + ++ KTF GS
Sbjct: 116 TIGTGNVGPASCGHVVTVFYQISDMSNNLISEDTKTFTIGS 156
>sp|Q9ZDD6|Y395_RICPR Putative peptidyl-prolyl cis-trans isomerase RP395 OS=Rickettsia
prowazekii (strain Madrid E) GN=RP395 PE=4 SV=1
Length = 333
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 31 RLYHENVIDHYNNPRNVGS-------------FEKNDATVGTGLVGAPACGDVMKLQIKV 77
+++ EN++ N P N F+ N T G+G +G +CG V+ + ++
Sbjct: 81 KIFFENILQPLNGPINPNDYTIEVHKDLVKTLFKIN--TFGSGNIGPASCGHVVTVFYQI 138
Query: 78 DEETGQIVDACFKTFGCGSA 97
+ ++ KTF GSA
Sbjct: 139 SDMNNNLISEDTKTFTLGSA 158
>sp|Q68WY2|Y383_RICTY Putative peptidyl-prolyl cis-trans isomerase RT0383 OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=RT0383 PE=4
SV=1
Length = 333
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 31 RLYHENVIDHYNNPRNVGS-------------FEKNDATVGTGLVGAPACGDVMKLQIKV 77
+++ EN++ N P N F+ N T G+G +G +CG V+ + ++
Sbjct: 81 KVFFENILQPLNGPINPNDYTIEVHKDLVKTLFKIN--TFGSGNIGPASCGHVVTVFYQI 138
Query: 78 DEETGQIVDACFKTFGCGSA 97
+ ++ KTF GSA
Sbjct: 139 SDMNNNLISEDTKTFTLGSA 158
>sp|Q92I78|Y542_RICCN Putative peptidyl-prolyl cis-trans isomerase RC0542 OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=RC0542 PE=4
SV=1
Length = 331
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 31 RLYHENVIDHYNNPRNVGSFE---KND--------ATVGTGLVGAPACGDVMKLQIKVDE 79
+ + EN++ N P N + + D T+G+G +G +CG V+ + ++ +
Sbjct: 80 KAFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSGNIGPASCGHVVTVFYQISD 139
Query: 80 ETGQIVDACFKTFGCGSA 97
++ KTF GSA
Sbjct: 140 MNNTLISEDTKTFTLGSA 157
>sp|Q4ULV6|Y616_RICFE Putative peptidyl-prolyl cis-trans isomerase RF_0616 OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0616 PE=4
SV=1
Length = 331
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 31 RLYHENVIDHYNNPRNVGSFE---KND--------ATVGTGLVGAPACGDVMKLQIKVDE 79
+ + EN++ N P N + + D T+G+G +G +CG V+ + ++ +
Sbjct: 80 KAFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSGNIGPASCGHVVTVFYQISD 139
Query: 80 ETGQIVDACFKTFGCGSA 97
++ KTF GSA
Sbjct: 140 MNNTLISEDTKTFTLGSA 157
>sp|Q57408|HGP4_HAEIN Probable hemoglobin and hemoglobin-haptoglobin-binding protein 4
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=HI_1565/HI_1567 PE=3 SV=3
Length = 999
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 37 VIDHYNNPRNVGSFEKNDATVGTGL 61
V+D YNNP +V S NDA VG L
Sbjct: 417 VVDKYNNPFSVASGTNNDAFVGKQL 441
>sp|A6UT35|VATA_META3 V-type ATP synthase alpha chain OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=atpA PE=3 SV=1
Length = 586
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 98 IASSSVATEWVKGKQMQEVLSIKNTGVAGKL 128
IA V E +KG QM EV+ + N G+ G++
Sbjct: 9 IAGPVVVAEGMKGAQMYEVVKVGNEGLTGEI 39
>sp|B9K883|EFG_THENN Elongation factor G OS=Thermotoga neapolitana (strain ATCC 49049 /
DSM 4359 / NS-E) GN=fusA PE=3 SV=1
Length = 695
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 73 LQIKVDEETGQ-------------IVDACFKTFGCGSAIASSSVA-TEWVKGKQMQEVLS 118
LQ+KVD+ETG+ IVD + FG + VA E +K E
Sbjct: 440 LQVKVDKETGETIISGMGELHLEIIVDRLKREFGVNVRVGQPQVAYRETIKKAAEAEGKY 499
Query: 119 IKNTGVAGKLQNIFL 133
I+ TG G+ ++ L
Sbjct: 500 IRQTGGRGQYGHVIL 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,512,211
Number of Sequences: 539616
Number of extensions: 2066915
Number of successful extensions: 5063
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4997
Number of HSP's gapped (non-prelim): 46
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)