Query 031835
Match_columns 152
No_of_seqs 117 out of 1112
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvl_A NIFU-like protein; prot 100.0 3.7E-39 1.3E-43 241.1 14.4 119 31-150 2-121 (129)
2 4eb5_C NIFU protein (NIFU-1); 100.0 7.2E-38 2.5E-42 240.4 13.2 114 32-150 1-116 (153)
3 2qq4_A Iron-sulfur cluster bio 100.0 3.7E-36 1.3E-40 227.0 15.9 118 27-149 2-138 (138)
4 2z7e_A ISCU protein, NIFU-like 100.0 3.9E-37 1.3E-41 237.2 9.3 118 30-150 2-121 (157)
5 1xjs_A NIFU-like protein; SR17 100.0 8.6E-36 2.9E-40 227.2 13.2 118 27-150 5-142 (147)
6 1su0_B NIFU like protein ISCU; 100.0 1.1E-35 3.6E-40 229.4 13.0 117 28-150 5-141 (159)
7 1ni7_A ER75, hypothetical prot 79.3 3.3 0.00011 31.0 5.2 65 64-132 58-123 (155)
8 3g0m_A Cysteine desulfuration 73.8 23 0.0008 25.8 12.6 92 30-132 24-116 (141)
9 3r07_C Putative lipoate-protei 72.1 4.2 0.00014 27.5 3.7 49 67-118 16-64 (91)
10 1wlo_A SUFE protein; structura 61.5 13 0.00043 27.1 4.8 90 30-132 19-109 (136)
11 1fs1_B SKP1, cyclin A/CDK2-ass 56.4 10 0.00035 27.2 3.5 23 97-119 110-132 (141)
12 2e5a_A Lipoyltransferase 1; li 54.5 10 0.00036 31.2 3.7 43 70-114 269-311 (347)
13 2ast_A S-phase kinase-associat 47.0 17 0.00059 26.4 3.5 24 96-119 114-137 (159)
14 2p1m_A SKP1-like protein 1A; F 44.0 16 0.00056 26.6 3.0 24 96-119 113-136 (160)
15 3v7d_A Suppressor of kinetocho 41.2 24 0.00081 26.2 3.5 36 83-119 109-144 (169)
16 2z2q_B Coat protein gamma; wil 35.2 21 0.00072 21.2 1.9 24 5-28 6-29 (44)
17 1dd4_C 50S ribosomal protein L 33.4 43 0.0015 19.4 3.0 29 103-132 5-33 (40)
18 2k5e_A Uncharacterized protein 33.3 11 0.00039 24.3 0.5 34 85-129 26-62 (73)
19 3r8s_S 50S ribosomal protein L 33.0 63 0.0022 22.3 4.5 40 101-149 17-56 (110)
20 3hrd_C Nicotinate dehydrogenas 31.7 73 0.0025 25.4 5.2 41 73-114 203-243 (296)
21 1nov_D Nodamura virus coat pro 31.6 26 0.00089 20.9 1.8 24 5-28 6-29 (44)
22 3o6u_A Uncharacterized protein 30.4 81 0.0028 22.3 4.8 24 67-92 17-40 (128)
23 2gha_A Maltose ABC transporter 29.5 57 0.002 25.7 4.2 38 98-135 342-380 (382)
24 2ftc_M Mitochondrial ribosomal 28.6 34 0.0012 23.8 2.4 21 101-121 13-33 (110)
25 3nvz_B Xanthine dehydrogenase/ 26.8 76 0.0026 25.4 4.5 77 73-150 215-299 (305)
26 2zjr_P 50S ribosomal protein L 26.6 52 0.0018 23.8 3.2 21 100-120 37-57 (134)
27 1p8c_A Conserved hypothetical 26.4 1.8E+02 0.006 20.7 6.2 57 90-149 77-133 (145)
28 1i4j_A 50S ribosomal protein L 25.9 39 0.0013 23.4 2.3 21 101-121 17-37 (110)
29 1vke_A Carboxymuconolactone de 25.4 1.8E+02 0.0061 20.4 6.7 56 90-148 67-122 (133)
30 2wpn_B Periplasmic [nifese] hy 24.2 1.6E+02 0.0055 25.1 6.4 43 70-121 30-72 (495)
31 1zav_U 50S ribosomal protein L 22.4 51 0.0017 17.9 1.8 26 103-129 5-30 (30)
32 1vqz_A Lipoate-protein ligase, 21.3 79 0.0027 25.8 3.7 43 68-114 268-310 (341)
33 2k8s_A Thioredoxin; dimer, str 20.8 85 0.0029 19.0 3.0 24 88-111 6-29 (80)
34 1f8v_D Mature capsid protein g 20.7 21 0.0007 20.9 -0.0 24 5-28 6-29 (40)
35 1cc1_L Hydrogenase (large subu 20.0 2.2E+02 0.0075 24.3 6.4 43 70-121 25-67 (498)
No 1
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=100.00 E-value=3.7e-39 Score=241.08 Aligned_cols=119 Identities=58% Similarity=0.904 Sum_probs=111.6
Q ss_pred HhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcC
Q 031835 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKG 110 (152)
Q Consensus 31 ~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~G 110 (152)
++|+++|+|||.||+|+|.++++++.+++++.+||+|||+|+||++|+++ |+|+|++|+++||++++||+|+|+++++|
T Consensus 2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~-~~I~d~~f~~~GCais~ASaS~~te~i~G 80 (129)
T 3lvl_A 2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKG 80 (129)
T ss_dssp -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSS-SCEEEEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCC-CeEEEEEEEecCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999876667788999999999999999832 89999999999999999999999999999
Q ss_pred CCHHHHHchhHHHHHhhhcCcH-HHHHHHHHHHHHHHHHhh
Q 031835 111 KQMQEVLSIKNTGVAGKLQNIF-LYHLLNCIAACLLKMLSR 150 (152)
Q Consensus 111 ktl~EA~~l~~~~I~~~Lg~~p-~~hca~~a~~~l~~~~~~ 150 (152)
||++||..|++++|.+.|+.+| .+||+.|+..||+.||..
T Consensus 81 kt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~ 121 (129)
T 3lvl_A 81 KSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIAD 121 (129)
T ss_dssp CCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999777 999999999999999975
No 2
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=100.00 E-value=7.2e-38 Score=240.44 Aligned_cols=114 Identities=45% Similarity=0.744 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCC
Q 031835 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK 111 (152)
Q Consensus 32 lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gk 111 (152)
+|+++|+|||.||+|+|.+++++. ++..+||+|||+|+||++|++ |+|+|++|+++||++++||+|+|+++++||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d~---~~~~~nP~CGD~i~l~lkv~d--~~I~D~~F~g~GCais~ASaS~mtelv~GK 75 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDADG---VGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQTFGCAAAIATSSMATEMAKGK 75 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCSE---EEEEECTTTCCEEEEEEEESS--SBEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEecC--CeEEEEEEEEeCcHHHHHHHHHHHHHHcCC
Confidence 699999999999999999999884 567899999999999999987 999999999999999999999999999999
Q ss_pred CHHHHHchhHHHHHhhhcCcH--HHHHHHHHHHHHHHHHhh
Q 031835 112 QMQEVLSIKNTGVAGKLQNIF--LYHLLNCIAACLLKMLSR 150 (152)
Q Consensus 112 tl~EA~~l~~~~I~~~Lg~~p--~~hca~~a~~~l~~~~~~ 150 (152)
|++||..|+.++|.++|+++| .+||+.|+..||++||..
T Consensus 76 tleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~ 116 (153)
T 4eb5_C 76 TIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVD 116 (153)
T ss_dssp BHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 999999999999999998776 999999999999999975
No 3
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-36 Score=227.03 Aligned_cols=118 Identities=30% Similarity=0.441 Sum_probs=105.1
Q ss_pred chhhHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHH
Q 031835 27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE 106 (152)
Q Consensus 27 ~~~~~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~e 106 (152)
+++.++|+++|+|||.||+|+|.+++++. ++..+||+|||+|+||++|++ |+|+|++|+++||++++||+|+|++
T Consensus 2 ~~l~~lY~~~Ildh~~nP~n~G~l~~~~~---~~~~~np~CGD~i~l~l~v~~--~~I~d~~f~~~GCais~ASaS~~te 76 (138)
T 2qq4_A 2 SVLDELYREILLDHYQSPRNFGVLPQATK---QAGGMNPSCGDQVEVMVLLEG--DTIADIRFQGQGCAISTASASLMTE 76 (138)
T ss_dssp CHHHHHHHHHHHHHHHSCTTBSCCTTCSE---EEEEECTTTCCEEEEEEEEET--TEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCCCe---EEeeCCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHH
Confidence 35789999999999999999999998873 567799999999999999987 9999999999999999999999999
Q ss_pred HHcCCCHHHHHchhHHHHHh---------------hhcCc---H-HHHHHHHHHHHHHHHHh
Q 031835 107 WVKGKQMQEVLSIKNTGVAG---------------KLQNI---F-LYHLLNCIAACLLKMLS 149 (152)
Q Consensus 107 li~Gktl~EA~~l~~~~I~~---------------~Lg~~---p-~~hca~~a~~~l~~~~~ 149 (152)
+++|||++||..++++++.- .|.+. | .+||+.|+..||++||.
T Consensus 77 ~i~Gkt~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~ 138 (138)
T 2qq4_A 77 AVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEALR 138 (138)
T ss_dssp HHTTSBHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHHHHC
T ss_pred HHcCCcHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHHHhC
Confidence 99999999999999876432 22222 4 79999999999999983
No 4
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=100.00 E-value=3.9e-37 Score=237.22 Aligned_cols=118 Identities=42% Similarity=0.620 Sum_probs=109.2
Q ss_pred hHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHc
Q 031835 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVK 109 (152)
Q Consensus 30 ~~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~ 109 (152)
.++|+++|++||.||+|+|.+++++. ++..+||.|||+|+|||+|++++|+|+|++|+++||++++||+|+|+++++
T Consensus 2 ~~lY~e~Ildh~~nPrn~G~l~~~d~---~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~ 78 (157)
T 2z7e_A 2 SFEYNEKVLDHFLNPRNVGVLEDANG---VGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVK 78 (157)
T ss_dssp TTHHHHHHHHHHHSCSSBSCCTTCSE---EEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999883 567899999999999999951128999999999999999999999999999
Q ss_pred CCCHHHHHchhHHHHHhhhcCcH--HHHHHHHHHHHHHHHHhh
Q 031835 110 GKQMQEVLSIKNTGVAGKLQNIF--LYHLLNCIAACLLKMLSR 150 (152)
Q Consensus 110 Gktl~EA~~l~~~~I~~~Lg~~p--~~hca~~a~~~l~~~~~~ 150 (152)
|||++||..|+++++.+.|+++| .+||+.|+..||++||..
T Consensus 79 Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~ 121 (157)
T 2z7e_A 79 GKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKD 121 (157)
T ss_dssp TSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999997666 999999999999999964
No 5
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=100.00 E-value=8.6e-36 Score=227.22 Aligned_cols=118 Identities=30% Similarity=0.467 Sum_probs=104.6
Q ss_pred chhhHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHH
Q 031835 27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE 106 (152)
Q Consensus 27 ~~~~~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~e 106 (152)
++++++|+++|+|||.||+|+|.+ +++. ++..+||+|||+|+||++|++ |+|+|++|+++||++++||+|+|++
T Consensus 5 ~~l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~~--~~I~d~~f~~~GCais~ASaS~mte 78 (147)
T 1xjs_A 5 ANLDTLYRQVIMDHYKNPRNKGVL-NDSI---VVDMNNPTCGDRIRLTMKLDG--DIVEDAKFEGEGCSISMASASMMTQ 78 (147)
T ss_dssp TTTHHHHHHHHHHHHHSCCCCCCC-CSSE---EEEEEETTTTEEEEEEEECCS--SBCCEEEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEECC--CeEEEEEEEecCCHHHHHHHHHHHH
Confidence 568999999999999999999999 8873 567799999999999999987 8999999999999999999999999
Q ss_pred HHcCCCHHHHHchhHHHHHhh----------hc---------CcH-HHHHHHHHHHHHHHHHhh
Q 031835 107 WVKGKQMQEVLSIKNTGVAGK----------LQ---------NIF-LYHLLNCIAACLLKMLSR 150 (152)
Q Consensus 107 li~Gktl~EA~~l~~~~I~~~----------Lg---------~~p-~~hca~~a~~~l~~~~~~ 150 (152)
+++|||++||..|++++..-+ |+ ..| .+||+.|+..||++||.+
T Consensus 79 ~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~~ 142 (147)
T 1xjs_A 79 AIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAK 142 (147)
T ss_dssp HHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCS
T ss_pred HHcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHH
Confidence 999999999999987643221 22 136 999999999999999854
No 6
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=100.00 E-value=1.1e-35 Score=229.43 Aligned_cols=117 Identities=29% Similarity=0.419 Sum_probs=104.0
Q ss_pred hhhHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHH
Q 031835 28 AMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEW 107 (152)
Q Consensus 28 ~~~~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~el 107 (152)
+++++|+++|+|||.||+|+|.+ +++. ++..+||+|||+|+||++|++ |+|+|++|+++||++++||+|+|+++
T Consensus 5 ~l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~~--g~I~d~~F~~~GCais~ASaS~mte~ 78 (159)
T 1su0_B 5 KLNHLYMAVVADHSKRPHHHGQL-DGVE---AVQLNNPTCGDVISLTVKFDE--DKIEDIAFAGNGCTISTASSSMMTDA 78 (159)
T ss_dssp -CCHHHHHHHHHHHHSCSSBSCC-TTCC---CEEEECSSSCCEEEEEEEESS--SSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHHH
Confidence 57899999999999999999999 8874 456789999999999999987 89999999999999999999999999
Q ss_pred HcCCCHHHHHchhHHHH--------H--hhhcC---------cH-HHHHHHHHHHHHHHHHhh
Q 031835 108 VKGKQMQEVLSIKNTGV--------A--GKLQN---------IF-LYHLLNCIAACLLKMLSR 150 (152)
Q Consensus 108 i~Gktl~EA~~l~~~~I--------~--~~Lg~---------~p-~~hca~~a~~~l~~~~~~ 150 (152)
++|||++||..|.+++. . +.|++ +| .+||+.|+..||++||.+
T Consensus 79 v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al~~ 141 (159)
T 1su0_B 79 VIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKR 141 (159)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHh
Confidence 99999999999988633 2 33432 26 999999999999999964
No 7
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=79.28 E-value=3.3 Score=31.00 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEEEEeCCCCcEeeeeeeecc-chHHHHHHHHHHHHHcCCCHHHHHchhHHHHHhhhcCcH
Q 031835 64 APACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQNIF 132 (152)
Q Consensus 64 np~CGD~I~i~l~i~~~~g~I~d~~F~~~G-C~isiAsaS~l~eli~Gktl~EA~~l~~~~I~~~Lg~~p 132 (152)
-+.|-..|-++..++++ | .+.|.+.. =.|...-.+++.+.+.|+|.+|+.+++.++..+.||...
T Consensus 58 V~GCqS~VWl~~~~~~d-g---~l~F~adSDA~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~ 123 (155)
T 1ni7_A 58 IAGCENRVWLGYTVAEN-G---KMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRA 123 (155)
T ss_dssp ECSSSSCEEEECCCCSS-S---CCCCEEEESSHHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSS
T ss_pred CCCCccCeeEEEEEcCC-C---EEEEeeCCccHHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchh
Confidence 35599988887665332 5 57788774 467888999999999999999999999976667777443
No 8
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=73.81 E-value=23 Score=25.78 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=62.9
Q ss_pred hHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeecc-chHHHHHHHHHHHHH
Q 031835 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWV 108 (152)
Q Consensus 30 ~~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~G-C~isiAsaS~l~eli 108 (152)
.+.|+ .|+++.+.-.. +++... +-...-+.|-..|-+...++++ |+ +.|.+.. =.|...-.+++.+.+
T Consensus 24 e~Ry~-~LI~lgk~Lp~---lpe~~k---~~~~~V~GCqS~VWl~~~~~~~-g~---l~f~adSDA~IvkGl~alL~~~~ 92 (141)
T 3g0m_A 24 EEKYL-YIIELGQRLAE---LNPQDR---NPQNTIHGCQSQVWIVMRRNAN-GI---IELQGDSDAAIVKGLMAVVFILY 92 (141)
T ss_dssp HHHHH-HHHHHHHTSCC---CCGGGC---SGGGBCCSSSSCEEEEEEECTT-SB---EEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHccCCC---CCHHHc---CccCcCCCCccCeeEEEEEcCC-CE---EEEEecCccHHHHHHHHHHHHHH
Confidence 34454 46688776433 222111 1112345699999888888543 64 7787764 467888899999999
Q ss_pred cCCCHHHHHchhHHHHHhhhcCcH
Q 031835 109 KGKQMQEVLSIKNTGVAGKLQNIF 132 (152)
Q Consensus 109 ~Gktl~EA~~l~~~~I~~~Lg~~p 132 (152)
.|+|.+|+..++.++..+.||...
T Consensus 93 ~G~tp~eIl~~d~~~f~~~lGL~~ 116 (141)
T 3g0m_A 93 HQMTAQDIVHFDVRPWFEKMALAQ 116 (141)
T ss_dssp TTCBHHHHHHCCCHHHHHHHTCGG
T ss_pred cCCCHHHHHhCCHHHHHHHcCchh
Confidence 999999999999866667777654
No 9
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=72.06 E-value=4.2 Score=27.53 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=35.0
Q ss_pred CCCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHHHHHc
Q 031835 67 CGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS 118 (152)
Q Consensus 67 CGD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~EA~~ 118 (152)
.| .|++++.+++ |+|+++++.++==....-.-.-+.+.++|.+.++..+
T Consensus 16 ~G-~v~v~l~v~~--G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~ 64 (91)
T 3r07_C 16 KG-LIRVTLDLDG--NRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKIND 64 (91)
T ss_dssp SC-EEEEEEEEET--TEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHH
T ss_pred Cc-EEEEEEEEcC--CEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHH
Confidence 46 9999999988 9999999988722111123456778889998884443
No 10
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=61.49 E-value=13 Score=27.07 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=61.2
Q ss_pred hHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEeeeeeeecc-chHHHHHHHHHHHHH
Q 031835 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWV 108 (152)
Q Consensus 30 ~~lYs~~Ile~~~~Prn~G~l~~~d~~v~~g~~~np~CGD~I~i~l~i~~~~g~I~d~~F~~~G-C~isiAsaS~l~eli 108 (152)
.+.|+- ++++.+.-.... +.. . ...-+.|-..|-++..+++ +. ..+.|.+.. =.|...-.+++...+
T Consensus 19 e~Ry~~-LI~lgk~Lp~lp---e~~-~----~~~V~GCqS~VWl~~~~~~--~g-~~l~f~~dSDA~IvkGl~alL~~~~ 86 (136)
T 1wlo_A 19 ELRSQV-LLEYAAKVPPPP---PGV-E----LERVHECQTPFFVHADVEG--GK-VRLYFHVPDEAPTVKAFAGLLREGL 86 (136)
T ss_dssp HHHHHH-HHHHHHTCCCCC---SSC-C----CEECTTSSSCCEEEEEEET--TE-EEEEEECSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHhhCCCCC---hhh-h----hccCCCCccCeEEEEEEeC--Cc-eEEEEecCCccHHHHHHHHHHHHHH
Confidence 455554 557766543322 111 1 1234569999988887766 43 268888775 467888999999999
Q ss_pred cCCCHHHHHchhHHHHHhhhcCcH
Q 031835 109 KGKQMQEVLSIKNTGVAGKLQNIF 132 (152)
Q Consensus 109 ~Gktl~EA~~l~~~~I~~~Lg~~p 132 (152)
.|+|.+|+..++. +..+.||...
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~ 109 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEE 109 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchh
Confidence 9999999999998 4566666443
No 11
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=56.36 E-value=10 Score=27.19 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHch
Q 031835 97 AIASSSVATEWVKGKQMQEVLSI 119 (152)
Q Consensus 97 siAsaS~l~eli~Gktl~EA~~l 119 (152)
.-.++..++.+++|||.+|.+++
T Consensus 110 ldl~c~~vA~~ikgkt~eeiR~~ 132 (141)
T 1fs1_B 110 LDVTCKTVANMIKGKTPEEIRKT 132 (141)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 44566788999999999998765
No 12
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=54.54 E-value=10 Score=31.20 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=35.2
Q ss_pred EEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHH
Q 031835 70 VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (152)
Q Consensus 70 ~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~ 114 (152)
.|++.+.+++ |+|+++++.+.|=........-+.+.++|.+++
T Consensus 269 ~v~~~~~v~~--g~I~~~~i~~~~d~~~~~~~~~l~~~L~G~~~~ 311 (347)
T 2e5a_A 269 EIKVFIDVKN--GRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFS 311 (347)
T ss_dssp EEEEEEEEET--TEEEEEEEECCTTTSCHHHHHHHHHHHTTSBSC
T ss_pred EEEEEEEEcC--CEEEEEEEEecCCcCChhHHHHHHHHhCCCCCC
Confidence 6788888888 999999999777666666667788999999775
No 13
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=47.02 E-value=17 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHch
Q 031835 96 SAIASSSVATEWVKGKQMQEVLSI 119 (152)
Q Consensus 96 isiAsaS~l~eli~Gktl~EA~~l 119 (152)
..-.|+..++.+++|||.+|..++
T Consensus 114 Lld~~c~~va~~i~gkt~eeir~~ 137 (159)
T 2ast_A 114 LLDVTCKTVANMIKGKTPEEIRKT 137 (159)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 445567789999999999998876
No 14
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=43.99 E-value=16 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHch
Q 031835 96 SAIASSSVATEWVKGKQMQEVLSI 119 (152)
Q Consensus 96 isiAsaS~l~eli~Gktl~EA~~l 119 (152)
..-.++..++.+++|||.+|.+++
T Consensus 113 Lldl~c~~vA~~ikgkt~eeir~~ 136 (160)
T 2p1m_A 113 LLDLTCQTVADMIKGKTPEEIRTT 136 (160)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 445667888999999999998876
No 15
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=41.24 E-value=24 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=22.6
Q ss_pred cEeeeeeeeccchHHHHHHHHHHHHHcCCCHHHHHch
Q 031835 83 QIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSI 119 (152)
Q Consensus 83 ~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~EA~~l 119 (152)
.|..+.|-.--.-.- .++-.++.+++|||.+|.+++
T Consensus 109 Li~AAnyLdIk~Lld-l~c~~vA~~ikgktpeeiR~~ 144 (169)
T 3v7d_A 109 IILAANYLNIKPLLD-AGCKVVAEMIRGRSPEEIRRT 144 (169)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcHHHHH-HHHHHHHHHHcCCCHHHHHHH
Confidence 344444443332333 345678889999999998865
No 16
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=35.18 E-value=21 Score=21.22 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred hhhhHHhHHHHhhhhCCCCCCCch
Q 031835 5 GSKRLLRQATAAAVAAPRPVQVAA 28 (152)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (152)
+-||+|.|-..++..-|-||+...
T Consensus 6 rVk~ilks~l~a~S~iPGPVG~~a 29 (44)
T 2z2q_B 6 RVKSIIKSSLAAASNIPGPIGVAA 29 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH
Confidence 568999999999999999998755
No 17
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=33.44 E-value=43 Score=19.37 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=24.8
Q ss_pred HHHHHHcCCCHHHHHchhHHHHHhhhcCcH
Q 031835 103 VATEWVKGKQMQEVLSIKNTGVAGKLQNIF 132 (152)
Q Consensus 103 ~l~eli~Gktl~EA~~l~~~~I~~~Lg~~p 132 (152)
=+.+.+.++|+-|+.++.. .+++.+|-..
T Consensus 5 ~iie~i~~lTvlE~~eLvk-~leekfGVsa 33 (40)
T 1dd4_C 5 EIIEAIEKLTVSELAELVK-KLEDKFGVTA 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH-HHHHHTCCCS
T ss_pred HHHHHHHhCcHHHHHHHHH-HHHHHHCCCc
Confidence 3678999999999999984 8999988754
No 18
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=33.29 E-value=11 Score=24.26 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=22.7
Q ss_pred eeeeeeeccchHHHHHHHHHHHHHcCCCHHHHHc---hhHHHHHhhhc
Q 031835 85 VDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS---IKNTGVAGKLQ 129 (152)
Q Consensus 85 ~d~~F~~~GC~isiAsaS~l~eli~Gktl~EA~~---l~~~~I~~~Lg 129 (152)
.+.++..+||+.+ ++.|++||.. ++.+.+.+.|.
T Consensus 26 ~~~G~~c~~C~~a-----------~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 26 RSYNLGCIGCMGA-----------QNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp HHTTGGGGGTTTG-----------GGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCCCCCCCcc-----------ccccHHHHHHHcCCCHHHHHHHHH
Confidence 3455666788766 7788887776 56666666554
No 19
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=32.96 E-value=63 Score=22.32 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCHHHHHchhHHHHHhhhcCcHHHHHHHHHHHHHHHHHh
Q 031835 101 SSVATEWVKGKQMQEVLSIKNTGVAGKLQNIFLYHLLNCIAACLLKMLS 149 (152)
Q Consensus 101 aS~l~eli~Gktl~EA~~l~~~~I~~~Lg~~p~~hca~~a~~~l~~~~~ 149 (152)
+-.++++|.|++++||..+-. ..|+. .+......|+.|.|
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~--------f~pkk-aa~~v~k~L~sA~a 56 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT--------YTNKK-AAVLVKKVLESAIA 56 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH--------HCCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh--------hCCHH-HHHHHHHHHHHHHH
Confidence 356889999999999998754 13422 33445555555554
No 20
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=31.68 E-value=73 Score=25.44 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=26.7
Q ss_pred EEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHH
Q 031835 73 LQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (152)
Q Consensus 73 i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~ 114 (152)
+.++++++ |+|.+++.---|.+..---+.-+.+.+.|++++
T Consensus 203 ~~~~~~~~-g~i~~~ria~Ggv~~~p~ra~~~E~~L~G~~~~ 243 (296)
T 3hrd_C 203 MAVKVDDA-GVCTWASMRGGCIGRYPLHFKQAEEMLVGAPLT 243 (296)
T ss_dssp EEEEEETT-TEEEEEEEEEETSSSSCEECHHHHHHHTTSBCC
T ss_pred EEEEEcCC-CeEEEEEEEEECCCccccchHHHHHHhcCCCCC
Confidence 33445542 699999887666655444455667788898754
No 21
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=31.61 E-value=26 Score=20.85 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.1
Q ss_pred hhhhHHhHHHHhhhhCCCCCCCch
Q 031835 5 GSKRLLRQATAAAVAAPRPVQVAA 28 (152)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (152)
+-||+|.|-.+++..-|-||+...
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~a 29 (44)
T 1nov_D 6 RVRSILKSGLNFASTIPGPVGVAA 29 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH
Confidence 568999999999999999998755
No 22
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR biology; 2.50A {Clostridium perfringens}
Probab=30.37 E-value=81 Score=22.26 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.0
Q ss_pred CCCEEEEEEEEeCCCCcEeeeeeeec
Q 031835 67 CGDVMKLQIKVDEETGQIVDACFKTF 92 (152)
Q Consensus 67 CGD~I~i~l~i~~~~g~I~d~~F~~~ 92 (152)
-|..+.+.+.|++ |+|+++.|...
T Consensus 17 ~g~~v~V~VTVkd--gkIt~i~~~~~ 40 (128)
T 3o6u_A 17 HGYKAKLSIKVSD--GKITEAKYNEF 40 (128)
T ss_dssp TSEEEEEEEEESS--SSEEEEEEEEE
T ss_pred cCCeEEEEEEEEC--CEEEEEEEecc
Confidence 4667899999988 99999999743
No 23
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=29.47 E-value=57 Score=25.71 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcC-CCHHHHHchhHHHHHhhhcCcHHHH
Q 031835 98 IASSSVATEWVKG-KQMQEVLSIKNTGVAGKLQNIFLYH 135 (152)
Q Consensus 98 iAsaS~l~eli~G-ktl~EA~~l~~~~I~~~Lg~~p~~h 135 (152)
.+-...+.+.+.| ++++|+++-..+.+.+.|++.+|.|
T Consensus 342 ~~~~~~~~~~~~g~~~~~~al~~~~~~~~~~l~~~~~~~ 380 (382)
T 2gha_A 342 AAMNDALNLVVNGKATVEEALKNAVERIKAQIQGSHHHH 380 (382)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccccc
Confidence 3445566777788 6999999999999999999998333
No 24
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=28.58 E-value=34 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCHHHHHchhH
Q 031835 101 SSVATEWVKGKQMQEVLSIKN 121 (152)
Q Consensus 101 aS~l~eli~Gktl~EA~~l~~ 121 (152)
+-.++++|.|++++||..+-.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE 33 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 346889999999999998754
No 25
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=26.75 E-value=76 Score=25.42 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=41.9
Q ss_pred EEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHHH-----HHchhHHHHHhhhcCcH---HHHHHHHHHHHH
Q 031835 73 LQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQE-----VLSIKNTGVAGKLQNIF---LYHLLNCIAACL 144 (152)
Q Consensus 73 i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~E-----A~~l~~~~I~~~Lg~~p---~~hca~~a~~~l 144 (152)
+.+++++++|+|++++.---|.+..---+.-+.+.+.|+++++ |.+...+++. .-...+ .--.-.++..-+
T Consensus 215 ~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E~~L~G~~~~~~~~~~a~~~~~~~~~-~~~~d~~~s~~YR~~la~~l~ 293 (305)
T 3nvz_B 215 MRVLFQPGSMQVKELALCYGGMADRTISALKTTQKQLSKFWNEKLLQDVCAGLAEELS-LSPDAPGGMIEFRRTLTLSFF 293 (305)
T ss_dssp EEEEESTTSSBEEEEEEEEESSSSSCEECHHHHHTTTTCBSSHHHHHHHHHHHHHHTC-CCTTCTTCCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCeEEEEEEEEEcccCcEeeHHHHHHHhcCCCCCHHHHHHHHHHHHhhCC-CCCCCCCCCHHHHHHHHHHHH
Confidence 4445554337999998876666555444556677888987543 3333333331 001112 333455666666
Q ss_pred HHHHhh
Q 031835 145 LKMLSR 150 (152)
Q Consensus 145 ~~~~~~ 150 (152)
+|+|..
T Consensus 294 ~r~l~~ 299 (305)
T 3nvz_B 294 FKFYLT 299 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 26
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=26.60 E-value=52 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCHHHHHchh
Q 031835 100 SSSVATEWVKGKQMQEVLSIK 120 (152)
Q Consensus 100 saS~l~eli~Gktl~EA~~l~ 120 (152)
=+-.++++|.|++++||..+-
T Consensus 37 K~r~Va~~IRG~~v~eAl~~L 57 (134)
T 2zjr_P 37 KVRLVVDVIRGKSVQDAEDLL 57 (134)
T ss_dssp HHHHHHHHSTTSBHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHH
Confidence 356789999999999999874
No 27
>1p8c_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima} SCOP: a.152.1.2
Probab=26.39 E-value=1.8e+02 Score=20.74 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=37.9
Q ss_pred eeccchHHHHHHHHHHHHHcCCCHHHHHchhHHHHHhhhcCcHHHHHHHHHHHHHHHHHh
Q 031835 90 KTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQNIFLYHLLNCIAACLLKMLS 149 (152)
Q Consensus 90 ~~~GC~isiAsaS~l~eli~Gktl~EA~~l~~~~I~~~Lg~~p~~hca~~a~~~l~~~~~ 149 (152)
...||..|+..=.-.+. -.|.|.+|+.++.. +....++.|-+--+.-|..++.+.+.
T Consensus 77 ~~ngC~~cl~~H~~~A~-~~G~T~eEI~eal~--~a~~~~G~pa~~~a~~Al~~~~e~~~ 133 (145)
T 1p8c_A 77 TVLRCDDCIRYHLVRCV-QEGASDEEIFEALD--IALVVGGSIVIPHLRRAVGFLEELRE 133 (145)
T ss_dssp HHTTCHHHHHHHHHHHH-TTSCCHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH--HHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 46899999988666654 46999999998774 44455666632223336677666543
No 28
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=25.87 E-value=39 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCHHHHHchhH
Q 031835 101 SSVATEWVKGKQMQEVLSIKN 121 (152)
Q Consensus 101 aS~l~eli~Gktl~EA~~l~~ 121 (152)
+-.++++|.|++++||..+-.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILR 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 356899999999999998754
No 29
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620, structural genomics, JC protein structure initiative, PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Probab=25.42 E-value=1.8e+02 Score=20.42 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=36.7
Q ss_pred eeccchHHHHHHHHHHHHHcCCCHHHHHchhHHHHHhhhcCcHHHHHHHHHHHHHHHHH
Q 031835 90 KTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTGVAGKLQNIFLYHLLNCIAACLLKML 148 (152)
Q Consensus 90 ~~~GC~isiAsaS~l~eli~Gktl~EA~~l~~~~I~~~Lg~~p~~hca~~a~~~l~~~~ 148 (152)
..+||..|+..=.-.+. -.|.|.+|..++.. +....+|.|-.-.+.-|..++.+.+
T Consensus 67 ~~ngC~yCl~~H~~~A~-~~G~t~eeI~eal~--~a~~~~G~pa~~~a~~Al~~~~e~~ 122 (133)
T 1vke_A 67 TVLRCDDCIRYHLVRCV-QEGASDEEIFEALD--IALVVGGSIVIPHLRRAVGFLEELR 122 (133)
T ss_dssp HHTTCHHHHHHHHHHHH-HTTCCHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHH--HHHHHcCchhHHHHHHHHHHHHHHH
Confidence 46799999988766654 46999999998875 3334455562222334666666544
No 30
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=24.15 E-value=1.6e+02 Score=25.11 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=30.6
Q ss_pred EEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHHHHHchhH
Q 031835 70 VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKN 121 (152)
Q Consensus 70 ~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~EA~~l~~ 121 (152)
.++|.+.+++ |+|+++.+.+.== . =+-.+++||+..|+..++.
T Consensus 30 ~lri~l~vd~--~~V~~a~~~g~~~---R----G~Ekil~gr~~~~a~~i~~ 72 (495)
T 2wpn_B 30 HLKAEVVVEN--GKVVDARLSGGMY---R----GFETILRGRDPRDASQIVQ 72 (495)
T ss_dssp CEEEEEEEET--TEEEEEEEEECBC---C----CHHHHTTTSCGGGHHHHGG
T ss_pred cEEEEEEEeC--CEEEEEEEecccc---c----hHHHHHCCCCHHHHHHHhh
Confidence 4688888887 9999998754310 0 0345788999999988753
No 31
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.36 E-value=51 Score=17.86 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=19.6
Q ss_pred HHHHHHcCCCHHHHHchhHHHHHhhhc
Q 031835 103 VATEWVKGKQMQEVLSIKNTGVAGKLQ 129 (152)
Q Consensus 103 ~l~eli~Gktl~EA~~l~~~~I~~~Lg 129 (152)
-+.+.+.++|+-|+..+.. .+++..|
T Consensus 5 ~iie~i~~lTvlEl~eLvk-~lEe~fG 30 (30)
T 1zav_U 5 EIIEAIEKLTVSELAELVK-KLEDKFG 30 (30)
T ss_dssp HHHHHHHHSBHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHhCcHHHHHHHHH-HHHHHhC
Confidence 3567889999999999874 6666543
No 32
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=21.33 E-value=79 Score=25.85 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCEEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHH
Q 031835 68 GDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (152)
Q Consensus 68 GD~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~ 114 (152)
+-.|++++.|++ |+|+++++.++-=. ..--.-+.+.++|.+++
T Consensus 268 ~G~v~~~~~v~~--g~I~~~~i~gDf~~--~~~~~~l~~~L~G~~~~ 310 (341)
T 1vqz_A 268 SGKVEVFANVTE--SKIQDIKIYGDFFG--IEDVAAVEDVLRGVKYE 310 (341)
T ss_dssp TEEEEEEEEEET--TEEEEEEEEESCCC--SSCTHHHHHHHTTCBSS
T ss_pred CCcEEEEEEEeC--CEEEEEEEECCcCC--cchHHHHHHHhCCCCCC
Confidence 458999999988 99999999877211 11124567888998765
No 33
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=20.84 E-value=85 Score=18.96 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=19.6
Q ss_pred eeeeccchHHHHHHHHHHHHHcCC
Q 031835 88 CFKTFGCGSAIASSSVATEWVKGK 111 (152)
Q Consensus 88 ~F~~~GC~isiAsaS~l~eli~Gk 111 (152)
-|.+.+|+.|.....++-+++...
T Consensus 6 ~f~~~~C~~C~~~~~~l~~~~~~~ 29 (80)
T 2k8s_A 6 IFYHAGCPVCVSAEQAVANAIDPS 29 (80)
T ss_dssp EEEECSCHHHHHHHHHHHHHSCTT
T ss_pred EEeCCCCCchHHHHHHHHHHHHhc
Confidence 367889999999999888777654
No 34
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=20.75 E-value=21 Score=20.89 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=10.5
Q ss_pred hhhhHHhHHHHhhhhCCCCCCCch
Q 031835 5 GSKRLLRQATAAAVAAPRPVQVAA 28 (152)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (152)
+-||+|.|-.+++..-|-||+...
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~a 29 (40)
T 1f8v_D 6 GVLRVLNQISGTLSVIPGPVGTIS 29 (40)
T ss_dssp HHHHHHHHTCCC------------
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH
Confidence 468999999999999999997654
No 35
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=20.01 E-value=2.2e+02 Score=24.32 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCCcEeeeeeeeccchHHHHHHHHHHHHHcCCCHHHHHchhH
Q 031835 70 VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKN 121 (152)
Q Consensus 70 ~I~i~l~i~~~~g~I~d~~F~~~GC~isiAsaS~l~eli~Gktl~EA~~l~~ 121 (152)
.++|.+.+++ |+|+++.+.+.== . =+-.+++||+..|+..++.
T Consensus 25 ~lri~l~vdg--~~V~~a~~~g~~~---R----G~Ekil~gr~~~~a~~i~~ 67 (498)
T 1cc1_L 25 HLKIEVEVKD--GKVVDAKCSGGMF---R----GFEQILRGRDPRDSSQIVQ 67 (498)
T ss_dssp CEEEEEEEET--TEEEEEEEEECBC---C----CHHHHTTTSCGGGHHHHGG
T ss_pred cEEEEEEEeC--CEEEEEEEecCcC---c----cHHHHhCCCCHHHHHHHhh
Confidence 4688888887 9999998754311 0 0234778999999987753
Done!