Query 031837
Match_columns 152
No_of_seqs 128 out of 1068
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02386 superoxide dismutase 100.0 2E-54 4.4E-59 321.9 20.4 152 1-152 1-152 (152)
2 PLN02642 copper, zinc superoxi 100.0 7.8E-53 1.7E-57 315.7 20.0 150 2-151 8-157 (164)
3 KOG0441 Cu2+/Zn2+ superoxide d 100.0 5.4E-46 1.2E-50 273.1 15.0 152 1-152 1-154 (154)
4 PRK15388 Cu/Zn superoxide dism 100.0 2.5E-44 5.4E-49 272.3 18.6 133 10-149 35-176 (177)
5 cd00305 Cu-Zn_Superoxide_Dismu 100.0 1.3E-43 2.7E-48 262.1 19.1 142 2-150 1-143 (144)
6 PF00080 Sod_Cu: Copper/zinc s 100.0 2.6E-44 5.6E-49 264.6 14.9 139 4-148 1-142 (142)
7 PRK10290 superoxide dismutase; 100.0 3E-43 6.5E-48 266.0 18.2 131 11-149 34-173 (173)
8 COG2032 SodC Cu/Zn superoxide 100.0 2.2E-41 4.9E-46 254.6 15.8 141 4-149 31-179 (179)
9 PLN02957 copper, zinc superoxi 100.0 2.3E-38 5.1E-43 251.1 17.5 128 2-152 81-208 (238)
10 KOG4656 Copper chaperone for s 100.0 1.8E-37 3.8E-42 237.2 10.3 134 4-152 84-217 (247)
11 smart00754 CHRD A domain in th 84.2 4.8 0.0001 28.1 6.1 36 13-48 19-54 (118)
12 PF07452 CHRD: CHRD domain; I 77.9 7.6 0.00016 26.9 5.4 37 12-48 18-55 (119)
13 PF09559 Cas6: Cas6 Crispr; I 54.5 9.8 0.00021 29.6 2.1 33 109-148 152-188 (195)
14 PF08896 DUF1842: Domain of un 52.1 39 0.00085 24.0 4.7 28 9-36 28-55 (114)
15 PF07731 Cu-oxidase_2: Multico 44.2 30 0.00066 24.1 3.2 23 28-50 42-64 (138)
16 TIGR02807 cas6_var CRISPR-asso 42.7 14 0.00031 28.6 1.3 33 109-148 152-188 (190)
17 PF07495 Y_Y_Y: Y_Y_Y domain; 35.5 37 0.0008 20.5 2.2 19 31-49 30-48 (66)
18 COG5637 Predicted integral mem 31.8 63 0.0014 25.1 3.3 28 13-40 151-178 (217)
19 PF09912 DUF2141: Uncharacteri 23.3 87 0.0019 21.7 2.6 22 28-49 41-62 (112)
No 1
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=2e-54 Score=321.91 Aligned_cols=152 Identities=90% Similarity=1.440 Sum_probs=146.1
Q ss_pred CeEEEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 031837 1 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHA 80 (152)
Q Consensus 1 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~ 80 (152)
|++|+|+|++...++|+|+|+|.+++.++|+++|+||+||.|+|||||+|+|+++|+|||+||||.+..|+.|++..+|+
T Consensus 1 ~~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~ 80 (152)
T PLN02386 1 MVKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHA 80 (152)
T ss_pred CceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCcc
Confidence 67899999988889999999998777799999999999999999999999999999999999999999999999889999
Q ss_pred CCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEecC
Q 031837 81 GDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152 (152)
Q Consensus 81 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~~ 152 (152)
||||||.++++|.+++.+++++++|.++++|+|||||||+.+|||++++++.|+++|++|+|||||||++++
T Consensus 81 GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~~ 152 (152)
T PLN02386 81 GDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152 (152)
T ss_pred ccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=7.8e-53 Score=315.66 Aligned_cols=150 Identities=63% Similarity=1.126 Sum_probs=144.0
Q ss_pred eEEEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 031837 2 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAG 81 (152)
Q Consensus 2 ~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~G 81 (152)
++|+|+|++.+.++|+|+|+|..++.|+|+++|+||+||.|+|||||+|||+++|.|||+||||.+..|+.|.+..+|+|
T Consensus 8 ~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~G 87 (164)
T PLN02642 8 LRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAG 87 (164)
T ss_pred eeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCccc
Confidence 57999999888899999999987667999999999999999999999999999999999999999999999998899999
Q ss_pred CCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEec
Q 031837 82 DLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151 (152)
Q Consensus 82 DLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~ 151 (152)
|||||+++++|.+++.++++.++|.++++|+|||||||+.+|||++++++.|+|+|++|+|||||||++.
T Consensus 88 DLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 88 DLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred ccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999998999999999999999999974
No 3
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-46 Score=273.06 Aligned_cols=152 Identities=62% Similarity=1.036 Sum_probs=144.3
Q ss_pred CeEEEEEeCCCC-CeEEEEEEEEcCC-CCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 031837 1 MVKAVAVLGGTE-GVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNR 78 (152)
Q Consensus 1 ~~~Ava~l~~~~-~v~G~v~f~q~~~-g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~ 78 (152)
|.+|+++++++. .|.|+|.|+|..+ .++.|++.|+||+|+.|+||||++||.+++|.|||+||||.+..|+.|....+
T Consensus 1 ~~~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~r 80 (154)
T KOG0441|consen 1 LAQAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVR 80 (154)
T ss_pred CcceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccc
Confidence 568999999865 8999999999544 37999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEecC
Q 031837 79 HAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152 (152)
Q Consensus 79 ~~GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~~ 152 (152)
|+|||||+.+..+|.+...+.+..++|+|+++|+|||+|||+++|||+.+..+.|..+|++|+|+|||+|++.+
T Consensus 81 H~gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~~~s~ktgnag~r~aCgvi~~~~ 154 (154)
T KOG0441|consen 81 HVGDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGHELSKKTGNAGARPACGVIGIAG 154 (154)
T ss_pred ccccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCchhhhhhccccCCCccceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=2.5e-44 Score=272.27 Aligned_cols=133 Identities=32% Similarity=0.586 Sum_probs=119.6
Q ss_pred CCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCC--------CCCCCCCCcCCCCC-CCCCCCCCCCCC
Q 031837 10 GTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN--------GCMSTGPHFNPAGK-EHGAPEDDNRHA 80 (152)
Q Consensus 10 ~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~--------~c~saG~hfnp~~~-~~~~p~~~~~~~ 80 (152)
+.+.+.|+|+|+|.+++ +.|+++++||+||.|+|||||+|+|++ +|.|||+||||++. .|+.|++..+|+
T Consensus 35 ~~g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~ 113 (177)
T PRK15388 35 GTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHL 113 (177)
T ss_pred CCCceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCc
Confidence 56889999999999755 999999999999999999999999973 28999999999997 788888778999
Q ss_pred CCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEE
Q 031837 81 GDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 149 (152)
Q Consensus 81 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~ 149 (152)
||||||+++++|++++.++++.+. ++.+|+|||||||+.+|||++ .|+++|++|+|||||||+
T Consensus 114 GDLpNi~a~~dG~a~~~~~~~~~~--~~~~i~GralVIHa~~DD~~~----~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 114 GDLPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHKGGDNYSD----KPAPLGGGGARFACGVIE 176 (177)
T ss_pred CcCcCEEECCCccEEEEEEeCCcc--cCcccCCcEEEEECCCCCCCC----CCCcCCCCCceEEEEeec
Confidence 999999999999999999888764 235999999999999999864 367789999999999996
No 5
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=1.3e-43 Score=262.11 Aligned_cols=142 Identities=54% Similarity=0.880 Sum_probs=132.0
Q ss_pred eEEEEEeCCC-CCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 031837 2 VKAVAVLGGT-EGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHA 80 (152)
Q Consensus 2 ~~Ava~l~~~-~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~ 80 (152)
++|+++|++. +.++|+|+|+|.++ .++|+++|+||+||.|+|||||+|+|+++|+|+|+||||.+..|+.|....||.
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~ 79 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHA 79 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCC
Confidence 4799999964 47999999999986 699999999999999999999999999999999999999999999998889999
Q ss_pred CCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEe
Q 031837 81 GDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150 (152)
Q Consensus 81 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~ 150 (152)
|||+||+++++|+++++|++++++|++.++++|||||||+.+||| .++|.|++|.|++||+|.-
T Consensus 80 GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~------~~~p~~~sg~~~~~G~~~a 143 (144)
T cd00305 80 GDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDL------GKGPDELSGGTGNAGVRVA 143 (144)
T ss_pred CcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCC------CCCCCcccccceeeEeEEe
Confidence 999999999999999999999999998889999999999999997 4678888999999998853
No 6
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=2.6e-44 Score=264.57 Aligned_cols=139 Identities=58% Similarity=0.994 Sum_probs=129.9
Q ss_pred EEEEeCC-CCCeEEEEEEEEcCCC-CeEEEEEEecCCCCceeEEEcccCCC-CCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 031837 4 AVAVLGG-TEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDT-TNGCMSTGPHFNPAGKEHGAPEDDNRHA 80 (152)
Q Consensus 4 Ava~l~~-~~~v~G~v~f~q~~~g-~v~v~~~v~GL~~g~h~~HIHe~g~~-~~~c~saG~hfnp~~~~~~~p~~~~~~~ 80 (152)
|+|+|++ .++|+|+|+|+|..+. .+.|+++|+||+++.|+|||||+|+| +++|.++|+||||.++.|+.|+...|+.
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 8999994 5789999999999964 59999999999999999999999999 7789999999999999999887778999
Q ss_pred CCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEE
Q 031837 81 GDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 148 (152)
Q Consensus 81 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI 148 (152)
|||++++++.+|.+++.|++++|+|+|+++|+|||||||+.+||+ .++++|++|+|||||+|
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~------~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDF------TSQPTGNAGARLACGVI 142 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTT------THHHHTTTTSEEEEEEE
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCc------ccccCCCCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999996 78899999999999998
No 7
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=3e-43 Score=266.03 Aligned_cols=131 Identities=33% Similarity=0.611 Sum_probs=117.3
Q ss_pred CCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCC--------CCCCCCCCcCCCCC-CCCCCCCCCCCCC
Q 031837 11 TEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN--------GCMSTGPHFNPAGK-EHGAPEDDNRHAG 81 (152)
Q Consensus 11 ~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~--------~c~saG~hfnp~~~-~~~~p~~~~~~~G 81 (152)
.+.+.|+++|+|.+++ ++|+++|+||+||.|+|||||+|||++ +|.|||+||||.+. .|+.|.. .+|+|
T Consensus 34 ~g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~G 111 (173)
T PRK10290 34 VGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHLG 111 (173)
T ss_pred CCceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCcC
Confidence 5789999999999755 999999999999999999999999973 28999999999998 6887864 68999
Q ss_pred CCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEE
Q 031837 82 DLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 149 (152)
Q Consensus 82 DLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~ 149 (152)
|||||+++++|++++.++++.+. +.++|+|||||||+.+|||++ .++|+|++|+|||||||.
T Consensus 112 DL~ni~a~~dG~a~~~~~~~~~~--~~~~i~GralVIH~~~DD~~~----~~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 112 DLPALVVNNDGKATDPVIAPRLK--SLDEVKDKALMVHVGGDNMSD----QPKPLGGGGERYACGVIK 173 (173)
T ss_pred cccCEEECCCeeEEEEEEeCCcc--CccccCCcEEEEECCCCCCCC----CCCcCCCCcceEEEEeEC
Confidence 99999999999999999888764 357999999999999999864 367899999999999994
No 8
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-41 Score=254.55 Aligned_cols=141 Identities=45% Similarity=0.744 Sum_probs=126.7
Q ss_pred EEEEeC-CCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCC------CCCCCCCCcCCC-CCCCCCCCC
Q 031837 4 AVAVLG-GTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTN------GCMSTGPHFNPA-GKEHGAPED 75 (152)
Q Consensus 4 Ava~l~-~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~------~c~saG~hfnp~-~~~~~~p~~ 75 (152)
+.+.+. ..++..|+|++++.+.+ +.++..+.+|+|+.|+|||||+|+|.+ .|.||||||||. ...|+.|+.
T Consensus 31 ~~~~~~~~~G~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~ 109 (179)
T COG2032 31 ANAVLVDGTGKDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNA 109 (179)
T ss_pred ceeeccCCCCceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCC
Confidence 344444 45689999999999876 999999999999999999999999987 699999999999 678999998
Q ss_pred CCCCCCCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEE
Q 031837 76 DNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 149 (152)
Q Consensus 76 ~~~~~GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~ 149 (152)
+..|.|||++|+++++|+++..++++.++|.++.++.|||||||+.+|||.+.+ .|+|++|+|+|||||+
T Consensus 110 ~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~~~P----~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 110 DGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYSTQP----EPLGGAGARVACGVIK 179 (179)
T ss_pred CCCCcCcCcceEECCCCcEEEEEecccceeccccccCCeEEEEEcCCccccCCC----ccCCCCccceeeeeeC
Confidence 889999999999999999999999999999888999999999999999975322 3399999999999995
No 9
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=2.3e-38 Score=251.06 Aligned_cols=128 Identities=32% Similarity=0.582 Sum_probs=116.0
Q ss_pred eEEEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 031837 2 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAG 81 (152)
Q Consensus 2 ~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~G 81 (152)
.+|++.+++. .|+|+|+|+|.+++.+.|+++|+||+||.|+|||||+|||+++|.|||+||||.+..|+ .+|.|
T Consensus 81 ~~av~~~~g~-~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~G 154 (238)
T PLN02957 81 SAAVAEFKGP-DIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPLG 154 (238)
T ss_pred ceEEEEecCC-ceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCCC
Confidence 4689999874 69999999999866699999999999999999999999999999999999999999886 57999
Q ss_pred CCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEecC
Q 031837 82 DLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152 (152)
Q Consensus 82 DLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~~ 152 (152)
|||||.++++|.+++.+.+..++|+ +++|||||||+.+|+. +.++|||||++++
T Consensus 155 DLgni~~~~~G~a~~~~~~~~~~l~---~iiGrs~vih~~~D~~--------------~~~~~~gvi~rsa 208 (238)
T PLN02957 155 DLGTLEADENGEATFSGTKEKLKVW---DLIGRSLAVYATADKS--------------GPGIAAAVIARSA 208 (238)
T ss_pred ccCCEEeCCCceEEEEEECCCcCcc---ccCCcEEEEEeCCCCC--------------CCCeEEEEEeccc
Confidence 9999999999999999998888886 9999999999998861 3469999999975
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=237.24 Aligned_cols=134 Identities=43% Similarity=0.814 Sum_probs=122.9
Q ss_pred EEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 031837 4 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDL 83 (152)
Q Consensus 4 Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~GDL 83 (152)
|++.+.+...|.|.|||.|.....++|+++++||+||.|+|||||+||.+++|+|+|.||||+...|++|. .|||
T Consensus 84 t~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~-----~gDL 158 (247)
T KOG4656|consen 84 TVAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPN-----EGDL 158 (247)
T ss_pred HHHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCC-----cccc
Confidence 45566666789999999999987899999999999999999999999999999999999999999998876 4999
Q ss_pred CceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEecC
Q 031837 84 GNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152 (152)
Q Consensus 84 g~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~~ 152 (152)
||+.+|++|.+.+++.|..|+.| ++||||+||....||++..+ |++|.|+|||||++++
T Consensus 159 Gn~~ad~nGraf~s~~de~Lkvw---dlIGRsvVi~k~~ddlgg~p-------~nsge~la~gvIARSA 217 (247)
T KOG4656|consen 159 GNNRADKNGRAFFSAPDEKLKVW---DLIGRSVVISKSLDDLGGEP-------GNSGERLACGVIARSA 217 (247)
T ss_pred cccccccCCcEEEecccccccHh---hhhceeEEEeccccccCCCC-------CCcCcceeEEEeeecc
Confidence 99999999999999999999999 99999999999999985422 7899999999999974
No 11
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=84.23 E-value=4.8 Score=28.10 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=29.1
Q ss_pred CeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcc
Q 031837 13 GVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHA 48 (152)
Q Consensus 13 ~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe 48 (152)
...|.+.|+-..++.+..++.++||..-.-..|||+
T Consensus 19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 678988888775566888899999987434899998
No 12
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=77.93 E-value=7.6 Score=26.88 Aligned_cols=37 Identities=35% Similarity=0.545 Sum_probs=30.5
Q ss_pred CCeEEEEEEEEcCCC-CeEEEEEEecCCCCceeEEEcc
Q 031837 12 EGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHA 48 (152)
Q Consensus 12 ~~v~G~v~f~q~~~g-~v~v~~~v~GL~~g~h~~HIHe 48 (152)
..-.|.+.|+-..++ .+.+++.++||....-.+|||.
T Consensus 18 s~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 18 SSASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CCCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 357899999877764 5788899999966678999999
No 13
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=54.49 E-value=9.8 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=22.8
Q ss_pred CCCCCcEEEEeeCCCCCCCCCCCCc---ccCCCCC-CeEEEEEE
Q 031837 109 NSIIGRAVVVHADPDDLGKGGHELS---KTTGNAG-GRVACGII 148 (152)
Q Consensus 109 ~~iiGRSiVIH~~~dd~~~~~~~~s---~~~G~~G-~RlACgvI 148 (152)
..|.|||++||.-..+ .| |..|=.| .++.||+.
T Consensus 152 ~~v~g~sL~v~~L~~e-------~Sl~LQ~~GLG~~r~mGCGlF 188 (195)
T PF09559_consen 152 GTVVGRSLMVAGLSPE-------DSLRLQEQGLGGKRHMGCGLF 188 (195)
T ss_pred cceEEEEEEecCCChh-------hceeehhhccCCCcccceeEe
Confidence 4688999999996543 33 4445444 56899985
No 14
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=52.15 E-value=39 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCCeEEEEEEEEcCCCCeEEEEEEec
Q 031837 9 GGTEGVKGTVSFSQEGDGPTTVSGSLSG 36 (152)
Q Consensus 9 ~~~~~v~G~v~f~q~~~g~v~v~~~v~G 36 (152)
.++..|+|..+++|...-++.|..+++|
T Consensus 28 ~~~~~VsG~a~ItQat~ppl~~~s~v~G 55 (114)
T PF08896_consen 28 TPDKSVSGRARITQATNPPLNFHSDVWG 55 (114)
T ss_pred CCCCEEEeEEEEEEecCCCcceEEEeEE
Confidence 3568899999999988666888877774
No 15
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=44.21 E-value=30 Score=24.13 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.8
Q ss_pred eEEEEEEecCCCCceeEEEcccC
Q 031837 28 TTVSGSLSGLKPGPHGFHVHALG 50 (152)
Q Consensus 28 v~v~~~v~GL~~g~h~~HIHe~g 50 (152)
..+++.|.+.....|.||+|-+.
T Consensus 42 ~~v~~~l~N~~~~~Hp~HlHG~~ 64 (138)
T PF07731_consen 42 DVVEIVLQNNGSMPHPFHLHGHS 64 (138)
T ss_dssp SEEEEEEEECTTSSEEEEETTSE
T ss_pred CEEEEEEECCCCCccceEEEeeE
Confidence 46788888877778999999864
No 16
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=42.72 E-value=14 Score=28.59 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=22.3
Q ss_pred CCCCCcEEEEeeCCCCCCCCCCCCc---ccCCCCC-CeEEEEEE
Q 031837 109 NSIIGRAVVVHADPDDLGKGGHELS---KTTGNAG-GRVACGII 148 (152)
Q Consensus 109 ~~iiGRSiVIH~~~dd~~~~~~~~s---~~~G~~G-~RlACgvI 148 (152)
..|.|||++||.-... .| |..|=.| .++.||+.
T Consensus 152 ~~v~g~sL~v~~Ls~e-------dSl~LQ~~GLGg~r~mGCGlF 188 (190)
T TIGR02807 152 FTVVGFALELHGLSAE-------DSLRLQEQGLGGRRKMGCGLF 188 (190)
T ss_pred ceEEEEEEEEcCCChH-------HhHhHHHhcCCCCCceeeeec
Confidence 4688999999996543 33 3344444 56889974
No 17
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.52 E-value=37 Score=20.50 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=14.0
Q ss_pred EEEEecCCCCceeEEEccc
Q 031837 31 SGSLSGLKPGPHGFHVHAL 49 (152)
Q Consensus 31 ~~~v~GL~~g~h~~HIHe~ 49 (152)
+++++.|+||.|-++|...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 7788899999998888764
No 18
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=31.83 E-value=63 Score=25.12 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=23.4
Q ss_pred CeEEEEEEEEcCCCCeEEEEEEecCCCC
Q 031837 13 GVKGTVSFSQEGDGPTTVSGSLSGLKPG 40 (152)
Q Consensus 13 ~v~G~v~f~q~~~g~v~v~~~v~GL~~g 40 (152)
.-+|.|+|...+...+.|.+.|+--+||
T Consensus 151 ~NsG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 151 ENSGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred CCCccEEeeeCCCCceEEEEEEEecCCc
Confidence 4679999999987668999999987775
No 19
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=23.29 E-value=87 Score=21.74 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.3
Q ss_pred eEEEEEEecCCCCceeEEEccc
Q 031837 28 TTVSGSLSGLKPGPHGFHVHAL 49 (152)
Q Consensus 28 v~v~~~v~GL~~g~h~~HIHe~ 49 (152)
-.+++.+..|+||.|++-|..-
T Consensus 41 ~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 41 GTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred CcEEEEECCCCCccEEEEEEEe
Confidence 3578889999999999988763
Done!