Citrus Sinensis ID: 031843

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MQMILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYWL
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccEEEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHcccEEEEEcccccEEccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccEEEEEEEEEcccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHcHHHHHHHHHHHHHHccccccccHHEHcccEEEEEcccccEEccccEEEEEEEEccccccEEcc
Coil and Loop (DISEMBL)
mqmilsssssslpipsfpckcfstfhalrtffpqkkhivrcssshnlkdngfhckvklkrRVVPFLlfssglfptlsasgktksknpydeKRLLEQNKRmqkensapegfpnfirEGFEVKVvtsenytkrdsgliyrdfevgkgnfplywl
Flexible Loop (DISEMBL)
mqmilsssssslpipsFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSsglfptlsasgktksknpydeKRLLEQNkrmqkensapegfpnfireGFEVKVVtsenytkrdsgliyrdfevgkgnfplywl
Low Complexity Region (SEG)
MQMilsssssslpipsFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYWL
Disordered region (IsUnstruct)
**************PSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPT***********************************PNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYW*
Disordered Region (DISOPRED)
**************PSFPCKCFSTFHALRTFFPQKKH*************GFHCKVKLKRRVVPFLLFSSGLFPTL*****************************APEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYWL
Disordered Region (DISEMBL)
************PIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSAS********YDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYWL
Disordered Region (DISPRO)
********SSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYWL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQMILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q0WRJ7	242	Peptidyl-prolyl cis-trans	yes	no	0.684	0.429	0.616	2e-26

>sp|Q0WRJ7|FK202_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 85/112 (75%), Gaps = 8/112 (7%)

Query: 39  VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
           V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct: 30  VCCSLSEEPKD---QC---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query: 97  NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+G+FP
Sbjct: 84  NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFP 135

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Involved in the accumulation of the PSII complex.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
225453422	258	PREDICTED: FKBP-type peptidyl-prolyl cis	0.960	0.565	0.592	2e-39
255541078	265	fk506-binding protein, putative [Ricinus	0.743	0.426	0.669	2e-34
356520790	248	PREDICTED: FKBP-type peptidyl-prolyl cis	0.835	0.512	0.535	1e-32
351726032	248	uncharacterized protein LOC100305486 [Gl	0.888	0.544	0.516	5e-32
224137178	210	predicted protein [Populus trichocarpa]	0.677	0.490	0.626	2e-31
388505048	246	unknown [Lotus japonicus]	0.815	0.504	0.546	2e-30
449431986	260	PREDICTED: peptidyl-prolyl cis-trans iso	0.960	0.561	0.480	5e-29
388505134	160	unknown [Medicago truncatula]	0.690	0.656	0.566	5e-28
297820896	244	immunophilin [Arabidopsis lyrata subsp.	0.684	0.426	0.625	2e-25
30695188	242	FKBP-type peptidyl-prolyl cis-trans isom	0.684	0.429	0.616	1e-24

>gi|225453422|ref|XP_002274957.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic [Vitis vinifera] gi|297734593|emb|CBI16644.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 107/152 (70%), Gaps = 6/152 (3%)

Query: 3   MILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKD--NGFHCKV---- 56
           M+   +   LP P  P +  S    + +FF  KK I+ C SS+NLKD      C +    
Sbjct: 1   MLWLPTHPLLPQPYIPYRYLSACRTVGSFFSLKKPILHCRSSYNLKDYREQKGCVLPYEE 60

Query: 57  KLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIRE 116
            L+RR++ F L SSG FPTLS+S KTKSKNPYDEKRLL+QNKR+QKEN+APE FPNF+RE
Sbjct: 61  NLRRRLLIFFLVSSGCFPTLSSSAKTKSKNPYDEKRLLQQNKRIQKENNAPEDFPNFVRE 120

Query: 117 GFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           GFEVKVVT ENY   DSGLIYRDFEVGKG+ P
Sbjct: 121 GFEVKVVTPENYITSDSGLIYRDFEVGKGDCP 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541078|ref|XP_002511603.1| fk506-binding protein, putative [Ricinus communis] gi|223548783|gb|EEF50272.1| fk506-binding protein, putative [Ricinus communis]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 92/118 (77%), Gaps = 5/118 (4%)

Query: 35  KKHIVRCSSSHNLKDNGF--HCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDE 90
           KK  VRC    +L+ NG+  HC+  L+RR + F   SS   LF TL + GKTKSKNPYDE
Sbjct: 36  KKSTVRCFDDDSLR-NGYLLHCEETLRRRFLLFFSASSSVLLFQTLPSFGKTKSKNPYDE 94

Query: 91  KRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           +RLLEQNKR+QKEN+AP+ FPNF+REGFEVKVVTSENY KRDSGLIYRDFEVG G+ P
Sbjct: 95  RRLLEQNKRVQKENNAPDDFPNFVREGFEVKVVTSENYVKRDSGLIYRDFEVGNGDCP 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520790|ref|XP_003529043.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic-like [Glycine max]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 95/140 (67%), Gaps = 13/140 (9%)

Query: 16  SFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGF-------HCKVKLKRRVVPFLLF 68
           +FPC    T       F Q+K +         KD          H +  L+R +   +L 
Sbjct: 9   NFPCTVQGTI------FCQRKQLTHGCKDQKSKDYIVQDSCMLQHSEKALRRTLFLSVLV 62

Query: 69  SSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENY 128
           S+G+FPTLS+ GKTKSKNPYDEKRLL+QN+R+QKEN+APE FPNF+REGF+VKVV+S+NY
Sbjct: 63  SAGVFPTLSSYGKTKSKNPYDEKRLLQQNRRIQKENNAPEDFPNFVREGFQVKVVSSDNY 122

Query: 129 TKRDSGLIYRDFEVGKGNFP 148
            K DSGLIYRDF VG+G+FP
Sbjct: 123 VKSDSGLIYRDFVVGQGDFP 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726032|ref|NP_001236089.1| uncharacterized protein LOC100305486 [Glycine max] gi|255625657|gb|ACU13173.1| unknown [Glycine max]

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 104/153 (67%), Gaps = 18/153 (11%)

Query: 3   MILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKD----NGF---HCK 55
           M+L+S  S+     FPC          T F Q+K +    ++   KD    +G    H +
Sbjct: 1   MLLASFRSN-----FPCA------VQGTVFCQRKQLTHGCTNQKSKDYIVQDGCMLQHSE 49

Query: 56  VKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIR 115
             L+R +   +L S+G+FPTLS+ GKTKSKNPYDEKRLL+QN+R+QKEN+APE FPNF+R
Sbjct: 50  KALRRTLFLSVLVSAGVFPTLSSYGKTKSKNPYDEKRLLQQNRRIQKENNAPEDFPNFVR 109

Query: 116 EGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           EGF+VKVV+S+NY K DSGLIYRDF VG+G+ P
Sbjct: 110 EGFQVKVVSSDNYIKSDSGLIYRDFVVGQGDCP 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137178|ref|XP_002327057.1| predicted protein [Populus trichocarpa] gi|222835372|gb|EEE73807.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 82/115 (71%), Gaps = 12/115 (10%)

Query: 34  QKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRL 93
           Q  H+V C               KL+RR + F  FSSGL  T  + GKTKSKNPYDE+RL
Sbjct: 2   QNGHVVLCHEE------------KLRRRFLLFFSFSSGLLSTFPSYGKTKSKNPYDERRL 49

Query: 94  LEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           LEQNKR+QKEN+ PE FP+FIREGFEVKVV  ENY KRDSGLIYRDFEVG+G+ P
Sbjct: 50  LEQNKRIQKENNVPEDFPSFIREGFEVKVVAPENYIKRDSGLIYRDFEVGEGDCP 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505048|gb|AFK40590.1| unknown [Lotus japonicus]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 6/130 (4%)

Query: 25  FHALRTFFPQKKHIV-----RCSSSHNLKDNG-FHCKVKLKRRVVPFLLFSSGLFPTLSA 78
           F    T F Q+K +      + S  + ++D+   H    L+R+++  +L S+G+FPTLS+
Sbjct: 10  FSVQGTIFSQRKQLTHRYTNQKSEEYPVQDSCILHSARALRRKLLLSVLVSTGVFPTLSS 69

Query: 79  SGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYR 138
            GKTK  NP++EKRLL+QNK++QK N APE FPNFIREGFEVKV++SENY K DSGLIYR
Sbjct: 70  YGKTKGINPFNEKRLLQQNKQIQKANYAPEDFPNFIREGFEVKVISSENYIKCDSGLIYR 129

Query: 139 DFEVGKGNFP 148
           DFEVGKG+ P
Sbjct: 130 DFEVGKGDCP 139

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431986|ref|XP_004133781.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic-like [Cucumis sativus]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 100/154 (64%), Gaps = 8/154 (5%)

Query: 3   MILSSSSSSLP--IPSFPCKCFSTFHALRTFFPQKKHIVR---CSS-SHNLKDNGF--HC 54
           M+++ S+ SL     S   + FS     R F  Q K + R   C S +H+ ++N +    
Sbjct: 1   MLITCSTPSLTSSAHSLSYRAFSGCATSRAFITQTKQVQRYCSCQSFNHSSEENSYISLS 60

Query: 55  KVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFI 114
               +R+++ F L ++ LFPT  +S KTK+KNPYDE+RLLEQNKR QKEN+AP  FP+F+
Sbjct: 61  NENSRRKILLFFLSTTALFPTRHSSAKTKNKNPYDERRLLEQNKRRQKENNAPVDFPSFV 120

Query: 115 REGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           REGFEVKV+  E+Y KRDSGLIY D EVG G+ P
Sbjct: 121 REGFEVKVIAPESYVKRDSGLIYWDIEVGNGDCP 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505134|gb|AFK40633.1| unknown [Medicago truncatula]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 47  LKDNG-FHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENS 105
           ++DN   H +  L+R++   +L S+ +FPTLS+  KTK+ NPY+EKR+L+QN+ +QK+N+
Sbjct: 45  VQDNSILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNRNIQKQNN 104

Query: 106 APEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPLYW 151
           AP+ FPNFIREGFEVKVV  +NY  RDSGLIYRDFEVG+G+    W
Sbjct: 105 APDDFPNFIREGFEVKVVAPDNYITRDSGLIYRDFEVGEGDLSKGW 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820896|ref|XP_002878331.1| immunophilin [Arabidopsis lyrata subsp. lyrata] gi|297324169|gb|EFH54590.1| immunophilin [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 85/112 (75%), Gaps = 8/112 (7%)

Query: 39  VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
           V CS S   KD        L RR + ++L +S   LFP LS+S KTKSK+PYDE+RLLEQ
Sbjct: 32  VCCSLSEEPKDQ------SLSRRSLVYVLVASPCLLFPALSSSAKTKSKSPYDERRLLEQ 85

Query: 97  NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           NKR+Q+EN+AP+ FPNF+REGFEVKVV SENY K DSGLIYRDF+VG+G+ P
Sbjct: 86  NKRIQRENNAPDEFPNFVREGFEVKVVASENYIKADSGLIYRDFDVGQGDSP 137

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695188|ref|NP_567098.2| FKBP-type peptidyl-prolyl cis-trans isomerase 6 [Arabidopsis thaliana] gi|122236257|sp|Q0WRJ7.1|FK202_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic; Short=PPIase FKBP20-2; AltName: Full=FK506-binding protein 20-2; Short=AtFKBP20-2; AltName: Full=Immunophilin FKBP20-2; AltName: Full=Rotamase; Flags: Precursor gi|110736573|dbj|BAF00252.1| hypothetical protein [Arabidopsis thaliana] gi|119360117|gb|ABL66787.1| At3g60370 [Arabidopsis thaliana] gi|332646531|gb|AEE80052.1| FKBP-type peptidyl-prolyl cis-trans isomerase 6 [Arabidopsis thaliana]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 85/112 (75%), Gaps = 8/112 (7%)

Query: 39  VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
           V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct: 30  VCCSLSEEPKD---QC---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query: 97  NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
           NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+G+FP
Sbjct: 84  NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFP 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2103366	242	AT3G60370 "AT3G60370" [Arabido	0.684	0.429	0.616	3.8e-30
UNIPROTKB|Q7XHR0	258	P0477A12.35 "Peptidyl-prolyl c	0.592	0.348	0.622	1.9e-26
UNIPROTKB|A8HTG4	269	FKB20-2 "Peptidyl-prolyl cis-t	0.388	0.219	0.533	2.2e-11

TAIR|locus:2103366 AT3G60370 "AT3G60370" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 69/112 (61%), Positives = 85/112 (75%)

Query:    39 VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
             V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct:    30 VCCSLSEEPKDQ---C---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query:    97 NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
             NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+G+FP
Sbjct:    84 NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFP 135

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006457 "protein folding" evidence=IEA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q7XHR0 P0477A12.35 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 56/90 (62%), Positives = 69/90 (76%)

Query:    59 KRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGF 118
             +R  +  LL S  +    SA GKTKS+NPYDE+RLL+QNK++Q+ N AP+ FPNFIREGF
Sbjct:    63 RRAALALLLASPAMSVAFSAHGKTKSRNPYDERRLLQQNKKIQEANRAPDDFPNFIREGF 122

Query:   119 EVKVVTSENYTKRDSGLIYRDFEVGKGNFP 148
             EVKVVTS+NY  RDSGL+Y D +VG GN P
Sbjct:   123 EVKVVTSDNYITRDSGLLYEDIKVGTGNSP 152

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8HTG4 FKB20-2 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 158 (60.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/60 (53%), Positives = 40/60 (66%)

Query:    90 EKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGNFPL 149
             EK +L  N+R+Q +N  P  FP FIREGF+VKV+  E Y    SGLIY+DFE G G  P+
Sbjct:   106 EKLVLNLNRRIQTQNRVPVDFPGFIREGFDVKVL-GEGYQVAPSGLIYKDFEEGTGPLPV 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       139   0.00091  102 3  11 22  0.40    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  137 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.04u 0.20s 17.24t   Elapsed:  00:00:01
  Total cpu time:  17.04u 0.20s 17.24t   Elapsed:  00:00:01
  Start:  Fri May 10 03:43:26 2013   End:  Fri May 10 03:43:27 2013

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019110001	RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (212 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018455001	RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (188 aa)			•						0.495
	GSVIVG00020753001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (448 aa)				•			•		0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	86.8
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	84.4

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=86.80  E-value=0.58  Score=39.40  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             ecCCCceecCCceeeeeeccccCCCCCC
Q 031843          123 VTSENYTKRDSGLIYRDFEVGKGNFPLY  150 (152)
Q Consensus       123 v~~d~Yv~~dsGLIYkDf~~G~G~~Pk~  150 (152)
                      -.-+|+++.+|||.|+-.+.|+|+.|++
T Consensus       136 ~k~~gv~~t~sGl~y~Vi~~G~G~~p~~  163 (269)
T PRK10902        136 AKEKGVKTTSTGLLYKVEKEGTGEAPKD  163 (269)
T ss_pred             ccCCCcEECCCccEEEEEeCCCCCCCCC
Confidence            3457888999999999999999999864

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=84.40  E-value=0.84  Score=38.44  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             CceecCCceeeeeeccccCCCCC
Q 031843          127 NYTKRDSGLIYRDFEVGKGNFPL  149 (152)
Q Consensus       127 ~Yv~~dsGLIYkDf~~G~G~~Pk  149 (152)
                      .+++-++||+|+|.++|.|..|+
T Consensus       114 ~~~tl~~Gl~y~D~~vG~G~~a~  136 (226)
T KOG0552|consen  114 KSRTLPGGLRYEDLRVGSGPSAK  136 (226)
T ss_pred             cceecCCCcEEEEEEecCCCCCC
Confidence            34778899999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	87.71
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	86.28
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	83.63
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	82.98

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=87.71  E-value=0.34  Score=36.32  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             CCceecCCceeeeeeccccCCC-CC
Q 031843          126 ENYTKRDSGLIYRDFEVGKGNF-PL  149 (152)
Q Consensus       126 d~Yv~~dsGLIYkDf~~G~G~~-Pk  149 (152)
                      +|+++.++||.|++.+.|+|.. |+
T Consensus        30 ~~~~~~~sGl~~~vl~~G~G~~~~~   54 (167)
T 1jvw_A           30 PDAVKLPSGLVFQRIARGSGKRAPA   54 (167)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCC
T ss_pred             CCcEECCCCEEEEEEEcCCCCcCCC
Confidence            5788899999999999999997 75

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=86.28  E-value=0.45  Score=37.10  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             CCCceecCCceeeeeeccccCCCCCC
Q 031843          125 SENYTKRDSGLIYRDFEVGKGNFPLY  150 (152)
Q Consensus       125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk~  150 (152)
                      .+|+++.++||.|+..+.|+|+.|+.
T Consensus        98 ~~~v~~~~sGl~y~vl~~G~G~~p~~  123 (213)
T 1fd9_A           98 KPGVVVLPSGLQYKVINSGNGVKPGK  123 (213)
T ss_dssp             STTEEECTTSCEEEEEECCCSCCCCT
T ss_pred             cCCcEECCCccEEEEEecCCCccCCC
Confidence            46788899999999999999998863

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=83.63  E-value=0.57  Score=37.06  Aligned_cols=26  Identities=15%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             CCCceecCCceeeeeeccccCCCCCC
Q 031843          125 SENYTKRDSGLIYRDFEVGKGNFPLY  150 (152)
Q Consensus       125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk~  150 (152)
                      .+|+++.+|||.|+..+.|+|..|+.
T Consensus       109 ~~gv~~~~sGl~y~vl~~G~G~~p~~  134 (219)
T 3oe2_A          109 KPGVKELADGILMTELTPGTGPKPDA  134 (219)
T ss_dssp             STTCEECGGGCEEEEEECCCSCCCCT
T ss_pred             CCCcEECCCCeEEEEEecCCCccCCC
Confidence            37788999999999999999998863

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=82.98  E-value=0.89  Score=32.32  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             CCCceecCCceeeeeeccccCCCCC
Q 031843          125 SENYTKRDSGLIYRDFEVGKGNFPL  149 (152)
Q Consensus       125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk  149 (152)
                      ..++++.++||.|++.+.|+|+.|+
T Consensus        20 ~~~~~~~~~gl~~~~l~~G~G~~~~   44 (133)
T 2y78_A           20 HMTVVTTESGLKYEDLTEGSGAEAR   44 (133)
T ss_dssp             TTCCEECTTSCEEEEEECCSSCBCC
T ss_pred             CCCcEECCCCEEEEEEEcCCCCCCC
Confidence            3568899999999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	93.04
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	89.56
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	84.43

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.04  E-value=0.017  Score=41.11  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=34.4

Q ss_pred             hhHHHHHHHhHhhhhhcCCCCCcchhhhccceeEEecCCCceecCCceeeeeeccccCC-CCCC
Q 031843           88 YDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGN-FPLY  150 (152)
Q Consensus        88 ydEkrlL~~N~RIQ~~NnaP~DFP~FIREGfdVKVv~~d~Yv~~dsGLIYkDf~~G~G~-~Pk~  150 (152)
                      -+|+|+-++++++.+.         |+.+-     -..+|+++.+|||.|++.+.|+|+ .|+.
T Consensus         3 ~~eek~~~~~~~~~~~---------f~~~~-----~~~~~~~~~~sGl~y~il~~G~G~~~P~~   52 (160)
T d1jvwa_           3 SHEERMNNYRKRVGRL---------FMEQK-----AAQPDAVKLPSGLVFQRIARGSGKRAPAI   52 (160)
T ss_dssp             THHHHHHHHHHHHHHH---------HHHHH-----HHSTTEEECTTSCEEEEEECCCCSBCCCT
T ss_pred             cHHHHHHHHHHHHHHH---------HHHHh-----ccCCCCEECCCCCEEEEEECcccccCCCC
Confidence            3588888888777332         22111     113668888999999999999997 6864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.1  Score=38.05  Aligned_cols=26  Identities=31%  Similarity=0.569  Sum_probs=22.6

Q ss_pred             CCCceecCCceeeeeeccccCCCCCC
Q 031843          125 SENYTKRDSGLIYRDFEVGKGNFPLY  150 (152)
Q Consensus       125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk~  150 (152)
                      .+|.++.+|||.|++.+.|+|+.|+.
T Consensus        99 ~~~v~~~~sGl~y~v~~~G~G~~p~~  124 (210)
T d1q6ha_          99 EKGVKTSSTGLVYQVVEAGKGEAPKD  124 (210)
T ss_dssp             STTEEECTTSCEEEEEECCSSCCCCT
T ss_pred             cCceEEccCceEEEEeeCCCCCCCCC
Confidence            45677889999999999999999975

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=84.43  E-value=0.29  Score=35.30  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             CCCceecCCceeeeeeccccCCCCC
Q 031843          125 SENYTKRDSGLIYRDFEVGKGNFPL  149 (152)
Q Consensus       125 ~d~Yv~~dsGLIYkDf~~G~G~~Pk  149 (152)
                      .++.++.+|||-|+..+.|+|..|.
T Consensus        90 ~~~v~~~~sGl~y~v~~~G~G~~p~  114 (204)
T d1fd9a_          90 KPGVVVLPSGLQYKVINSGNGVKPG  114 (204)
T ss_dssp             STTEEECTTSCEEEEEECCCSCCCC
T ss_pred             CCceEEecCccEEEEeecCCCcccC
Confidence            4677888999999999999999886