Query 031844
Match_columns 152
No_of_seqs 121 out of 871
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 5.1E-53 1.7E-57 318.9 10.8 140 1-142 4-146 (171)
2 3ulx_A Stress-induced transcri 100.0 1.1E-52 3.9E-57 317.4 10.7 134 9-144 10-146 (174)
3 1cmb_A Met APO-repressor; DNA- 50.7 22 0.00077 23.3 4.0 38 21-62 50-87 (104)
4 1ldd_A APC2WHB, anaphase promo 36.9 18 0.0006 22.8 1.8 27 14-41 36-63 (74)
5 3nr5_A MAF1, repressor of RNA 26.9 15 0.0005 26.8 0.2 12 46-57 119-130 (164)
6 3dz1_A Dihydrodipicolinate syn 25.6 23 0.0008 27.8 1.2 21 10-32 105-125 (313)
7 4dox_A Coat protein; all helix 25.2 38 0.0013 25.9 2.2 30 7-36 147-177 (226)
8 1f6k_A N-acetylneuraminate lya 24.8 24 0.00082 27.4 1.1 21 11-32 103-123 (293)
9 3fkr_A L-2-keto-3-deoxyarabona 24.7 31 0.001 27.1 1.7 23 10-32 106-130 (309)
10 2ehh_A DHDPS, dihydrodipicolin 24.6 24 0.00083 27.4 1.1 21 11-32 99-119 (294)
11 2ojp_A DHDPS, dihydrodipicolin 24.4 25 0.00084 27.3 1.1 21 11-32 100-120 (292)
12 3cpr_A Dihydrodipicolinate syn 24.4 25 0.00084 27.6 1.1 22 10-32 114-135 (304)
13 2nuw_A 2-keto-3-deoxygluconate 23.8 32 0.0011 26.7 1.6 22 10-32 94-116 (288)
14 2yxg_A DHDPS, dihydrodipicolin 23.5 26 0.0009 27.1 1.1 21 11-32 99-119 (289)
15 2wkj_A N-acetylneuraminate lya 23.4 26 0.0009 27.4 1.1 21 11-32 110-130 (303)
16 3b4u_A Dihydrodipicolinate syn 23.3 33 0.0011 26.7 1.6 21 11-32 102-123 (294)
17 3dct_B Nuclear receptor coacti 23.1 39 0.0013 15.8 1.2 13 22-35 3-15 (21)
18 2rfg_A Dihydrodipicolinate syn 23.0 30 0.001 27.0 1.4 22 10-32 98-119 (297)
19 2vc6_A MOSA, dihydrodipicolina 22.8 28 0.00095 27.0 1.1 21 11-32 99-119 (292)
20 3d0c_A Dihydrodipicolinate syn 22.7 34 0.0012 26.9 1.7 21 11-32 110-130 (314)
21 1o5k_A DHDPS, dihydrodipicolin 22.1 29 0.00099 27.2 1.1 21 11-32 111-131 (306)
22 2v9d_A YAGE; dihydrodipicolini 21.9 30 0.001 27.7 1.1 21 11-32 130-150 (343)
23 2r91_A 2-keto-3-deoxy-(6-phosp 21.7 36 0.0012 26.3 1.6 21 11-32 94-115 (286)
24 3daq_A DHDPS, dihydrodipicolin 21.4 31 0.001 26.8 1.1 21 11-32 101-121 (292)
25 2r8w_A AGR_C_1641P; APC7498, d 21.4 37 0.0013 27.0 1.6 22 10-32 132-153 (332)
26 3si9_A DHDPS, dihydrodipicolin 21.3 31 0.0011 27.2 1.1 21 11-32 121-141 (315)
27 3e96_A Dihydrodipicolinate syn 21.2 39 0.0013 26.6 1.7 22 10-32 109-130 (316)
28 1xky_A Dihydrodipicolinate syn 21.1 31 0.0011 26.9 1.1 21 11-32 111-131 (301)
29 3m5v_A DHDPS, dihydrodipicolin 20.8 32 0.0011 26.8 1.1 21 11-32 107-127 (301)
30 1w3i_A EDA, 2-keto-3-deoxy glu 20.7 34 0.0012 26.5 1.3 21 11-32 95-116 (293)
31 3h5d_A DHDPS, dihydrodipicolin 20.2 34 0.0012 26.9 1.1 21 11-32 107-127 (311)
32 3na8_A Putative dihydrodipicol 20.0 42 0.0014 26.4 1.6 21 11-32 123-143 (315)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.1e-53 Score=318.90 Aligned_cols=140 Identities=56% Similarity=0.977 Sum_probs=121.2
Q ss_pred CCccccccCCccCCCCCeEECCChHHHHHHHHHHhHhcCCCCCCceeecCCCCCCCCCCCccc---CcceeeeecccccC
Q 031844 1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY 77 (152)
Q Consensus 1 m~~~~~~~~~~~~LppG~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~ 77 (152)
|+..+.....++.|||||||+|||||||.|||++|+.|.+++..+|+++|||.+|||+||+.. +.+|||||++.+++
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 677766666789999999999999999999999999999999999999999999999999764 57899999999999
Q ss_pred CCCCCCcccCCCceEeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCC
Q 031844 78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAA 142 (152)
Q Consensus 78 ~~~~r~~R~~~~G~Wk~~g~~k~i~~~~~g~~iG~kk~l~f~~~~~~~~~kt~W~M~EY~l~~~~ 142 (152)
++|.|.+|++++|+||++|+++.|.+ .+.+||+|++|+||.++.+++.+|+|+||||+|.+.+
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS 146 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred CCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCc
Confidence 99999999999999999999999986 4699999999999999999999999999999999875
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-52 Score=317.44 Aligned_cols=134 Identities=61% Similarity=1.099 Sum_probs=119.8
Q ss_pred CCccCCCCCeEECCChHHHHHHHHHHhHhcCCCCCCceeecCCCCCCCCCCCccc---CcceeeeecccccCCCCCCCcc
Q 031844 9 NGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNR 85 (152)
Q Consensus 9 ~~~~~LppG~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~k~~~~~r~~R 85 (152)
..++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.. +.+|||||++.+++++|.|.+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 4578999999999999999999999999999999999999999999999999864 4789999999999999999999
Q ss_pred cCCCceEeeeCCCceEEeCCCCeEEEEEEEEEEEeCCCCCCCCcCeEEEEEEeCCCCCC
Q 031844 86 ATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA 144 (152)
Q Consensus 86 ~~~~G~Wk~~g~~k~i~~~~~g~~iG~kk~l~f~~~~~~~~~kt~W~M~EY~l~~~~~~ 144 (152)
++++|+||++|++++|.+ .|.+||+||+|+||.++.+++.+|+|+||||+|.+....
T Consensus 90 ~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~ 146 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRA 146 (174)
T ss_dssp EETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--
T ss_pred ecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCc
Confidence 999999999999999975 478999999999999999999999999999999987654
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=50.67 E-value=22 Score=23.29 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHhHhcCCCCCCceeecCCCCCCCCCCCcc
Q 031844 21 HPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGD 62 (152)
Q Consensus 21 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~ 62 (152)
|-|..||+..-...-..|+|||. +.|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 45778888766666688999998 458888889998864
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=36.92 E-value=18 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCCeEECC-ChHHHHHHHHHHhHhcCCC
Q 031844 14 LPPGFRFHP-TDEELVVQYLKRKIFACPL 41 (152)
Q Consensus 14 LppG~rF~P-tDeELi~~yL~~k~~g~~~ 41 (152)
.|.|+.|+. |++||- .||..++...-+
T Consensus 36 ~~~~~~~~~it~~eL~-~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLE-GYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHH-HHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHH-HHHHHHHhCCeE
Confidence 367899998 889988 599999976644
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=26.87 E-value=15 Score=26.78 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=10.2
Q ss_pred eeecCCCCCCCC
Q 031844 46 IPEVDVCKSDPW 57 (152)
Q Consensus 46 I~~~Dvy~~~P~ 57 (152)
+.++|||++.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 567899999998
No 6
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=25.60 E-value=23 Score=27.82 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=15.5
Q ss_pred CccCCCCCeEECCChHHHHHHHH
Q 031844 10 GVLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~rF~PtDeELi~~yL 32 (152)
..+-+||- |.||+++|+.||-
T Consensus 105 avlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 105 GVMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp EEEECCCT--TCCSHHHHHHHHH
T ss_pred EEEECCCC--CCCCHHHHHHHHH
Confidence 34557774 5699999998764
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=25.17 E-value=38 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=18.9
Q ss_pred ccCCc-cCCCCCeEECCChHHHHHHHHHHhH
Q 031844 7 MKNGV-LRLPPGFRFHPTDEELVVQYLKRKI 36 (152)
Q Consensus 7 ~~~~~-~~LppG~rF~PtDeELi~~yL~~k~ 36 (152)
|.|.. ++-+-|..+.||++|+|.|-..+++
T Consensus 147 V~n~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 147 VENPAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTCTTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 33443 3344489999999999987554443
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=24.78 E-value=24 Score=27.40 Aligned_cols=21 Identities=14% Similarity=0.187 Sum_probs=15.9
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 103 vlv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 103 LSAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 44567754 8899999998774
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=24.70 E-value=31 Score=27.10 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=16.6
Q ss_pred CccCCCCCeE--ECCChHHHHHHHH
Q 031844 10 GVLRLPPGFR--FHPTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~r--F~PtDeELi~~yL 32 (152)
..+-+||=|- |.||+++|+.||-
T Consensus 106 avlv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 106 MVMAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EEEECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEEEcCCCCccCCCCCHHHHHHHHH
Confidence 3456777332 7899999998764
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.62 E-value=24 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.8
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 99 vlv~~P~y-~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 99 ALVVVPYY-NKPTQRGLYEHFK 119 (294)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 44567744 7899999998874
No 11
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=24.38 E-value=25 Score=27.32 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=15.8
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 100 vlv~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 100 CLTVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 44567754 7899999998774
No 12
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=24.36 E-value=25 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=16.4
Q ss_pred CccCCCCCeEECCChHHHHHHHH
Q 031844 10 GVLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~rF~PtDeELi~~yL 32 (152)
..+-+|| |.+.||+++|+.||-
T Consensus 114 avlv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 114 GLLVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEEEECC-CSSCCCHHHHHHHHH
T ss_pred EEEECCC-CCCCCCHHHHHHHHH
Confidence 3455677 448899999998774
No 13
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=23.79 E-value=32 Score=26.67 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=16.4
Q ss_pred CccCCCCCeEEC-CChHHHHHHHH
Q 031844 10 GVLRLPPGFRFH-PTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~rF~-PtDeELi~~yL 32 (152)
..+-+||-| |. ||+++|+.||-
T Consensus 94 avlv~~P~y-~~~~s~~~l~~~f~ 116 (288)
T 2nuw_A 94 GVSSHSPYY-FPRLPEKFLAKYYE 116 (288)
T ss_dssp EEEECCCCS-SCSCCHHHHHHHHH
T ss_pred EEEEcCCcC-CCCCCHHHHHHHHH
Confidence 345567754 77 99999998874
No 14
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=23.49 E-value=26 Score=27.11 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=15.8
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 99 vlv~~P~y-~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 99 VLSITPYY-NKPTQEGLRKHFG 119 (289)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 44567744 7899999998874
No 15
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=23.41 E-value=26 Score=27.37 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=16.0
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 110 vlv~~P~y-~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 110 VSAVTPFY-YPFSFEEHCDHYR 130 (303)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEecCCCC-CCCCHHHHHHHHH
Confidence 44567754 8899999998874
No 16
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=23.30 E-value=33 Score=26.67 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=15.9
Q ss_pred ccCCCCCeEEC-CChHHHHHHHH
Q 031844 11 VLRLPPGFRFH-PTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~-PtDeELi~~yL 32 (152)
.+-+||-| |. ||+++|+.||-
T Consensus 102 vlv~~P~y-~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 102 ILLAPPSY-FKNVSDDGLFAWFS 123 (294)
T ss_dssp EEECCCCS-SCSCCHHHHHHHHH
T ss_pred EEEcCCcC-CCCCCHHHHHHHHH
Confidence 45567754 77 99999998874
No 17
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=23.12 E-value=39 Score=15.82 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=8.9
Q ss_pred CChHHHHHHHHHHh
Q 031844 22 PTDEELVVQYLKRK 35 (152)
Q Consensus 22 PtDeELi~~yL~~k 35 (152)
+.|.+|+. ||.-|
T Consensus 3 ~kdhqllr-ylldk 15 (21)
T 3dct_B 3 SKDHQLLR-YLLDK 15 (26)
T ss_pred hhHHHHHH-HHHcc
Confidence 67889995 55543
No 18
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=23.04 E-value=30 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.4
Q ss_pred CccCCCCCeEECCChHHHHHHHH
Q 031844 10 GVLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~rF~PtDeELi~~yL 32 (152)
..+-+||-| |.||+++|+.||-
T Consensus 98 avlv~~P~y-~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 98 AVLCVAGYY-NRPSQEGLYQHFK 119 (297)
T ss_dssp EEEECCCTT-TCCCHHHHHHHHH
T ss_pred EEEEcCCCC-CCCCHHHHHHHHH
Confidence 345567754 7899999998774
No 19
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=22.75 E-value=28 Score=27.02 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=15.9
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||- .|.||+++|+.||-
T Consensus 99 vlv~~P~-y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 99 VLIVSPY-YNKPTQEGIYQHFK 119 (292)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEEcCCC-CCCCCHHHHHHHHH
Confidence 4456774 48899999998874
No 20
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=22.74 E-value=34 Score=26.87 Aligned_cols=21 Identities=29% Similarity=0.127 Sum_probs=15.9
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 110 vlv~~P~y-~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 110 VMIHQPVH-PYITDAGAVEYYR 130 (314)
T ss_dssp EEECCCCC-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 45567754 8899999998774
No 21
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=22.12 E-value=29 Score=27.17 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=15.8
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 111 vlv~~P~y-~~~s~~~l~~~f~ 131 (306)
T 1o5k_A 111 VLVVTPYY-NKPTQEGLYQHYK 131 (306)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 44567754 7899999998774
No 22
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=21.88 E-value=30 Score=27.70 Aligned_cols=21 Identities=10% Similarity=0.425 Sum_probs=15.9
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 130 vlv~~P~Y-~~~s~~~l~~~f~ 150 (343)
T 2v9d_A 130 IVVINPYY-WKVSEANLIRYFE 150 (343)
T ss_dssp EEEECCSS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 44567754 8899999998774
No 23
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=21.74 E-value=36 Score=26.27 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=16.0
Q ss_pred ccCCCCCeEEC-CChHHHHHHHH
Q 031844 11 VLRLPPGFRFH-PTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~-PtDeELi~~yL 32 (152)
.+-+||-| |. ||+++|+.||-
T Consensus 94 vlv~~P~y-~~~~s~~~l~~~f~ 115 (286)
T 2r91_A 94 VASLPPYY-FPRLSERQIAKYFR 115 (286)
T ss_dssp EEECCSCS-STTCCHHHHHHHHH
T ss_pred EEEcCCcC-CCCCCHHHHHHHHH
Confidence 45567755 78 99999998774
No 24
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.42 E-value=31 Score=26.80 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=15.4
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+|| |.|.||+++|+.||-
T Consensus 101 vlv~~P-~y~~~~~~~l~~~f~ 121 (292)
T 3daq_A 101 IMLITP-YYNKTNQRGLVKHFE 121 (292)
T ss_dssp EEEECC-CSSCCCHHHHHHHHH
T ss_pred EEECCC-CCCCCCHHHHHHHHH
Confidence 345566 457899999998774
No 25
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.42 E-value=37 Score=26.95 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=16.4
Q ss_pred CccCCCCCeEECCChHHHHHHHH
Q 031844 10 GVLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~rF~PtDeELi~~yL 32 (152)
..+-+||-| |.||+++|+.||-
T Consensus 132 avlv~~P~Y-~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 132 ALLLAPVSY-TPLTQEEAYHHFA 153 (332)
T ss_dssp EEEECCCCS-SCCCHHHHHHHHH
T ss_pred EEEECCCCC-CCCCHHHHHHHHH
Confidence 345567754 7899999998774
No 26
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=21.35 E-value=31 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=15.8
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 121 vlv~~P~y-~~~~~~~l~~~f~ 141 (315)
T 3si9_A 121 VLVVTPYY-NRPNQRGLYTHFS 141 (315)
T ss_dssp EEEECCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 45567744 7899999998764
No 27
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=21.23 E-value=39 Score=26.57 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=16.2
Q ss_pred CccCCCCCeEECCChHHHHHHHH
Q 031844 10 GVLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 10 ~~~~LppG~rF~PtDeELi~~yL 32 (152)
..+-+||-| +.||+++|+.||-
T Consensus 109 avlv~~P~y-~~~s~~~l~~~f~ 130 (316)
T 3e96_A 109 AVMIHMPIH-PYVTAGGVYAYFR 130 (316)
T ss_dssp EEEECCCCC-SCCCHHHHHHHHH
T ss_pred EEEEcCCCC-CCCCHHHHHHHHH
Confidence 345567755 7899999998764
No 28
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.06 E-value=31 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=15.7
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||- .|.||+++|+.||-
T Consensus 111 vlv~~P~-y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 111 VMLVAPY-YNKPSQEGMYQHFK 131 (301)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEEcCCC-CCCCCHHHHHHHHH
Confidence 4556774 47899999998774
No 29
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.82 E-value=32 Score=26.81 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=15.2
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||- .|.||+++|+.||-
T Consensus 107 vlv~~P~-y~~~s~~~l~~~f~ 127 (301)
T 3m5v_A 107 ILSVAPY-YNKPTQQGLYEHYK 127 (301)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEEcCCC-CCCCCHHHHHHHHH
Confidence 3445664 47899999998763
No 30
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=20.70 E-value=34 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.399 Sum_probs=15.8
Q ss_pred ccCCCCCeEEC-CChHHHHHHHH
Q 031844 11 VLRLPPGFRFH-PTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~-PtDeELi~~yL 32 (152)
.+-+||-| |. ||+++|+.||-
T Consensus 95 vlv~~P~y-~~~~s~~~l~~~f~ 116 (293)
T 1w3i_A 95 IASYAPYY-YPRMSEKHLVKYFK 116 (293)
T ss_dssp EEEECCCS-CSSCCHHHHHHHHH
T ss_pred EEEcCCCC-CCCCCHHHHHHHHH
Confidence 45567754 78 99999998874
No 31
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=20.18 E-value=34 Score=26.91 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=15.3
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||- .|.||+++|+.||-
T Consensus 107 vlv~~P~-y~~~s~~~l~~~f~ 127 (311)
T 3h5d_A 107 GLAIVPY-YNKPSQEGMYQHFK 127 (311)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEEcCCC-CCCCCHHHHHHHHH
Confidence 3456664 47899999998763
No 32
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.04 E-value=42 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=15.4
Q ss_pred ccCCCCCeEECCChHHHHHHHH
Q 031844 11 VLRLPPGFRFHPTDEELVVQYL 32 (152)
Q Consensus 11 ~~~LppG~rF~PtDeELi~~yL 32 (152)
.+-+||-| |.||+++|+.||-
T Consensus 123 vlv~~P~y-~~~s~~~l~~~f~ 143 (315)
T 3na8_A 123 VMVLPISY-WKLNEAEVFQHYR 143 (315)
T ss_dssp EEECCCCS-SCCCHHHHHHHHH
T ss_pred EEECCCCC-CCCCHHHHHHHHH
Confidence 45566644 7899999998764
Done!