BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031846
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum
GN=TOM20 PE=1 SV=1
Length = 204
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/143 (75%), Positives = 117/143 (81%), Gaps = 3/143 (2%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT FQQA D
Sbjct: 56 MISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDA 115
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
+PSN+LY+KSLEV AKAPELHMEIH+HG QQTM STS+ K+SKK KSSDLKY
Sbjct: 116 DPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMA---AEPSTSTSTKSSKKTKSSDLKY 172
Query: 121 DIFGWVILAVGIVAWVGFAKSHM 143
DIFGWVILAVGIVAWVGFAKS+M
Sbjct: 173 DIFGWVILAVGIVAWVGFAKSNM 195
>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis
thaliana GN=TOM20-3 PE=1 SV=1
Length = 202
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK F+ AT +FQQAVDE
Sbjct: 56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
+P N Y KSLE+ AKAP+LH E +K GLG Q MG P+ SS K K KKSSD KY
Sbjct: 116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSS--KAVKNKKSSDAKY 173
Query: 121 DIFGWVILAVGIVAWVGFAKSHMPTPPP 148
D GWVILA+G+VAW+ FAK+++P PP
Sbjct: 174 DAMGWVILAIGVVAWISFAKANVPVSPP 201
>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza
sativa subsp. japonica GN=TOM20 PE=2 SV=1
Length = 202
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 105/149 (70%), Gaps = 7/149 (4%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
DA SKLEEAL + P + D LWCLGNA TSH F T D +A E+F KAT FQ+AVD EP+
Sbjct: 61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPA 120
Query: 64 NELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIF 123
N+LY+KSL++++KAPELHMEIH+ Q S SSTS+ ++ KKKK SD YD+F
Sbjct: 121 NDLYRKSLDLSSKAPELHMEIHR----QMASQASQAASSTSNTRQSRKKKKDSDFWYDVF 176
Query: 124 GWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
GWV+L VG+V WVG AKS+ PP PR
Sbjct: 177 GWVVLGVGMVVWVGLAKSN---APPQAPR 202
>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza
sativa subsp. indica GN=TOM20 PE=2 SV=2
Length = 201
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 8/149 (5%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
DA SKLEEAL + P + D LWCLGNA TSH F T D +A E+F KAT FQ+AVD EP+
Sbjct: 61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPA 120
Query: 64 NELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIF 123
N+LY+KSL++++KAPELHMEIH+ Q ++ +S++S + S+KKK SD YD+F
Sbjct: 121 NDLYRKSLDLSSKAPELHMEIHR-----QMASQASQAASSTSNTRQSRKKKDSDFWYDVF 175
Query: 124 GWVILAVGIVAWVGFAKSHMPTPPPTPPR 152
GWV+L VG+V WVG AKS+ PP PR
Sbjct: 176 GWVVLGVGMVVWVGLAKSN---APPQAPR 201
>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis
thaliana GN=TOM20-2 PE=1 SV=2
Length = 210
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 5/152 (3%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
M+ DAISKLEEAL ++P +H LWC+ NA+T+HAF D +EAKE+F+KAT YFQ+A +E
Sbjct: 57 MLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGP-----SSTSSGAKTSKKKKS 115
+P N+ Y+KSL+ + KAPELHM+ G+GQQ +G G +S++ + KKK++
Sbjct: 117 DPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRN 176
Query: 116 SDLKYDIFGWVILAVGIVAWVGFAKSHMPTPP 147
++ YD+ GW+ILA GIVAWVG AKS P PP
Sbjct: 177 TEFTYDVCGWIILACGIVAWVGMAKSLGPPPP 208
>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis
thaliana GN=TOM20-4 PE=1 SV=1
Length = 187
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 100/145 (68%), Gaps = 14/145 (9%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MIL+AI KL EAL++ P +HD LW +GNAH S FL+ DQ EA + F KA+ +FQ AV+E
Sbjct: 54 MILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
+P +ELY+KSL +A+KAPELH G + GPSS S AKT K+KK+S+ KY
Sbjct: 114 QPESELYRKSLTLASKAPELH------------TGGTAGPSSNS--AKTMKQKKTSEFKY 159
Query: 121 DIFGWVILAVGIVAWVGFAKSHMPT 145
D+FGWVILA +VAW+ FA S P
Sbjct: 160 DVFGWVILASYVVAWISFANSQTPV 184
>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis
thaliana GN=TOM20-1 PE=1 SV=1
Length = 188
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD +A+ F A L+F AV +
Sbjct: 50 MIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQ 109
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKY 120
+P N++Y KSLE+A KAP+LH HK+ L G T + K K KKSSD KY
Sbjct: 110 QPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSP---KVVKNKKSSDEKY 166
Query: 121 DIFGWVILAVGIVAWVGFAK 140
+ GWVILA+G+VA + F K
Sbjct: 167 IVMGWVILAIGVVACISFRK 186
>sp|A1WX31|DNAK_HALHL Chaperone protein DnaK OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=dnaK PE=3 SV=1
Length = 647
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 41 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGPSTGP 100
D K+ A +Q D E + + QK+ E+A KA EL + ++ G G
Sbjct: 559 DAEKQEIESAISELEQVKDGEDKDAIEQKTQELATKAGELAQKAYQQAGGGDEASADAGA 618
Query: 101 SSTSSGAK 108
T+SG +
Sbjct: 619 GETASGEQ 626
>sp|Q7Q9J8|COQ4_ANOGA Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial
OS=Anopheles gambiae GN=AGAP005199 PE=3 SV=4
Length = 282
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
+IL A S + A +V P RHD + CLG A E ++ ++T Q+ + E
Sbjct: 73 LILSAGSSV--AALVDPRRHDMIACLGETTGREAL------EKILHYMRSTEEGQRILVE 124
Query: 61 EPSNELYQKSLEVAAKAPE 79
+P +E K PE
Sbjct: 125 KPRINTRTVDMEALKKMPE 143
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 94 MGPSTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWV 136
+ P T P ST AK S KK+SS K ++ G+++ + + A +
Sbjct: 1355 LMPYTPPQSTPKSAKGSAKKESSKRKINMSGYILFSSEMRAVI 1397
>sp|Q8N2E2|VWDE_HUMAN von Willebrand factor D and EGF domain-containing protein OS=Homo
sapiens GN=VWDE PE=2 SV=4
Length = 1590
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62
LD++S+ E AL C H S + L P+ D EY N TL + +++
Sbjct: 638 LDSVSRSEIAL----------GCKDLNHVSLSSLIPELDVTSEYINSDTLV--REINKHT 685
Query: 63 SNELYQKSLEVAAKAPELHMEIHKHGLGQQ 92
S E Y +L + K H+ + K GL Q
Sbjct: 686 SPEEYNLNLFLQEKK---HINLTKLGLNVQ 712
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,133,473
Number of Sequences: 539616
Number of extensions: 2309443
Number of successful extensions: 6840
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6813
Number of HSP's gapped (non-prelim): 38
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)