Query 031846
Match_columns 152
No_of_seqs 146 out of 254
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06552 TOM20_plant: Plant sp 100.0 3.1E-61 6.8E-66 388.6 8.0 137 1-140 50-186 (186)
2 KOG0553 TPR repeat-containing 99.4 3.8E-13 8.2E-18 116.0 6.8 67 1-78 130-196 (304)
3 PF13414 TPR_11: TPR repeat; P 99.2 3.5E-11 7.5E-16 78.9 5.9 51 2-62 19-69 (69)
4 PF13432 TPR_16: Tetratricopep 99.2 5.8E-11 1.3E-15 77.3 6.3 53 2-65 13-65 (65)
5 PRK15359 type III secretion sy 99.1 5.6E-10 1.2E-14 84.6 8.3 53 2-65 40-92 (144)
6 PF14559 TPR_19: Tetratricopep 99.1 5.3E-10 1.2E-14 72.8 6.3 60 2-72 7-66 (68)
7 PRK15359 type III secretion sy 99.0 1.5E-09 3.2E-14 82.4 8.9 63 1-74 73-135 (144)
8 KOG4626 O-linked N-acetylgluco 99.0 4.6E-10 1E-14 105.7 7.4 81 2-93 234-335 (966)
9 PF13371 TPR_9: Tetratricopept 99.0 4.1E-09 8.9E-14 69.5 7.7 62 1-73 10-71 (73)
10 PRK10370 formate-dependent nit 98.9 9.5E-09 2.1E-13 82.2 9.2 54 2-66 55-108 (198)
11 PRK11189 lipoprotein NlpI; Pro 98.9 4.8E-09 1E-13 87.6 7.2 53 2-65 80-132 (296)
12 PLN03088 SGT1, suppressor of 98.9 1.3E-08 2.7E-13 88.0 9.3 74 2-86 18-112 (356)
13 TIGR02552 LcrH_SycD type III s 98.9 1.1E-08 2.5E-13 73.7 7.5 53 2-65 33-85 (135)
14 KOG4626 O-linked N-acetylgluco 98.9 8.1E-09 1.8E-13 97.5 8.3 80 2-92 302-402 (966)
15 TIGR00990 3a0801s09 mitochondr 98.8 2.8E-08 6E-13 89.9 9.5 80 2-92 381-481 (615)
16 PF00515 TPR_1: Tetratricopept 98.8 1.4E-08 3E-13 59.1 4.2 34 20-64 1-34 (34)
17 PLN03088 SGT1, suppressor of 98.7 5.3E-08 1.1E-12 84.1 8.5 62 2-74 52-113 (356)
18 PRK12370 invasion protein regu 98.7 7.2E-08 1.6E-12 87.0 9.5 53 2-65 354-406 (553)
19 cd00189 TPR Tetratricopeptide 98.7 8.9E-08 1.9E-12 59.7 7.0 54 1-65 15-68 (100)
20 TIGR02552 LcrH_SycD type III s 98.7 5.8E-08 1.3E-12 70.0 6.8 67 2-79 67-133 (135)
21 PRK15363 pathogenicity island 98.7 1.2E-07 2.6E-12 75.5 8.9 54 1-65 50-103 (157)
22 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 5.8E-08 1.2E-12 88.0 7.8 55 1-68 90-147 (453)
23 PF07719 TPR_2: Tetratricopept 98.6 5.9E-08 1.3E-12 55.7 4.5 34 20-64 1-34 (34)
24 PRK12370 invasion protein regu 98.6 1.6E-07 3.5E-12 84.8 9.2 53 2-65 320-372 (553)
25 PRK11189 lipoprotein NlpI; Pro 98.6 1.3E-07 2.8E-12 79.1 7.2 54 1-65 113-166 (296)
26 KOG1126 DNA-binding cell divis 98.6 4E-08 8.6E-13 91.9 4.4 54 1-65 470-523 (638)
27 PRK10370 formate-dependent nit 98.6 1.4E-07 3E-12 75.4 7.0 55 2-65 89-144 (198)
28 PF06552 TOM20_plant: Plant sp 98.6 1.5E-07 3.3E-12 76.8 7.2 112 2-116 7-159 (186)
29 TIGR00990 3a0801s09 mitochondr 98.6 2.5E-07 5.4E-12 83.8 9.3 76 2-88 347-443 (615)
30 KOG0553 TPR repeat-containing 98.5 1.3E-07 2.8E-12 82.0 6.0 82 1-93 96-200 (304)
31 PF13431 TPR_17: Tetratricopep 98.5 7.1E-08 1.5E-12 57.9 3.0 33 8-51 1-33 (34)
32 PRK02603 photosystem I assembl 98.5 8.2E-07 1.8E-11 68.2 8.5 74 2-77 88-164 (172)
33 PRK11447 cellulose synthase su 98.5 5.1E-07 1.1E-11 87.9 8.8 81 1-92 284-399 (1157)
34 PRK15363 pathogenicity island 98.4 8.7E-07 1.9E-11 70.5 7.3 61 1-72 84-144 (157)
35 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.5E-06 3.2E-11 60.1 7.7 52 2-64 18-72 (119)
36 CHL00033 ycf3 photosystem I as 98.4 1.3E-06 2.9E-11 66.5 8.1 64 2-65 88-154 (168)
37 PRK09782 bacteriophage N4 rece 98.4 1.1E-06 2.4E-11 85.7 9.4 53 2-65 625-677 (987)
38 PF13414 TPR_11: TPR repeat; P 98.4 6.1E-07 1.3E-11 58.5 5.0 37 18-65 1-37 (69)
39 TIGR02521 type_IV_pilW type IV 98.4 2E-06 4.4E-11 63.7 8.1 54 1-65 46-99 (234)
40 PRK09782 bacteriophage N4 rece 98.4 1.1E-06 2.4E-11 85.7 8.5 53 2-65 659-711 (987)
41 CHL00033 ycf3 photosystem I as 98.4 2.1E-06 4.6E-11 65.3 7.9 55 1-66 50-107 (168)
42 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.1E-06 4.6E-11 59.4 6.6 61 1-72 54-117 (119)
43 PF12895 Apc3: Anaphase-promot 98.3 5.7E-07 1.2E-11 61.5 3.7 53 1-65 4-58 (84)
44 KOG1173 Anaphase-promoting com 98.3 1.7E-06 3.7E-11 80.5 7.8 65 1-76 470-534 (611)
45 PRK11447 cellulose synthase su 98.3 3E-06 6.5E-11 82.6 9.5 53 2-65 367-419 (1157)
46 PF13181 TPR_8: Tetratricopept 98.3 9.1E-07 2E-11 51.0 3.6 34 20-64 1-34 (34)
47 cd00189 TPR Tetratricopeptide 98.3 3.4E-06 7.4E-11 52.5 6.2 51 2-63 50-100 (100)
48 PRK15174 Vi polysaccharide exp 98.3 3.9E-06 8.4E-11 77.8 9.0 52 2-64 228-283 (656)
49 PF13424 TPR_12: Tetratricopep 98.3 1.1E-06 2.4E-11 58.8 3.7 49 1-60 20-75 (78)
50 TIGR03302 OM_YfiO outer membra 98.2 4.7E-06 1E-10 65.6 7.7 55 1-66 48-105 (235)
51 PRK02603 photosystem I assembl 98.2 4.5E-06 9.8E-11 64.0 7.5 56 1-67 50-108 (172)
52 TIGR02521 type_IV_pilW type IV 98.2 1.1E-05 2.5E-10 59.7 8.9 49 2-61 81-129 (234)
53 PF13428 TPR_14: Tetratricopep 98.2 3.8E-06 8.3E-11 52.0 5.3 41 20-71 1-41 (44)
54 KOG0543 FKBP-type peptidyl-pro 98.2 7.6E-06 1.7E-10 73.4 9.2 56 2-68 273-328 (397)
55 PRK10153 DNA-binding transcrip 98.2 3.5E-06 7.5E-11 77.0 7.0 55 1-67 435-489 (517)
56 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 3.2E-06 6.9E-11 76.9 6.3 41 14-65 69-109 (453)
57 PRK15174 Vi polysaccharide exp 98.2 9.4E-06 2E-10 75.3 9.3 54 1-65 91-144 (656)
58 PRK10049 pgaA outer membrane p 98.1 1.6E-05 3.5E-10 74.6 9.8 54 1-65 374-427 (765)
59 PRK15179 Vi polysaccharide bio 98.1 1.2E-05 2.6E-10 76.1 8.5 78 2-90 102-200 (694)
60 TIGR03302 OM_YfiO outer membra 98.1 1.3E-05 2.9E-10 63.0 7.2 69 1-72 85-156 (235)
61 KOG1126 DNA-binding cell divis 98.1 8.4E-06 1.8E-10 76.6 6.7 54 2-66 505-558 (638)
62 KOG0547 Translocase of outer m 98.1 1.1E-05 2.4E-10 74.7 7.3 79 3-92 377-476 (606)
63 TIGR02917 PEP_TPR_lipo putativ 98.0 2.9E-05 6.3E-10 68.4 9.4 53 2-65 752-804 (899)
64 PRK15179 Vi polysaccharide bio 98.0 1.6E-05 3.5E-10 75.2 8.2 54 1-65 135-188 (694)
65 TIGR02917 PEP_TPR_lipo putativ 98.0 2.6E-05 5.7E-10 68.7 8.9 52 2-65 786-837 (899)
66 KOG0548 Molecular co-chaperone 98.0 1.5E-05 3.3E-10 73.6 7.6 53 2-65 374-426 (539)
67 PRK10803 tol-pal system protei 98.0 1.6E-05 3.5E-10 66.9 7.2 54 2-66 159-215 (263)
68 PRK10049 pgaA outer membrane p 98.0 3.8E-05 8.2E-10 72.2 9.5 52 2-64 65-116 (765)
69 KOG1155 Anaphase-promoting com 98.0 2.4E-05 5.1E-10 72.1 7.3 52 3-65 381-432 (559)
70 PRK11788 tetratricopeptide rep 97.9 4.9E-05 1.1E-09 63.3 8.5 53 1-64 195-247 (389)
71 KOG1125 TPR repeat-containing 97.9 1.9E-05 4E-10 73.6 5.9 54 2-66 446-499 (579)
72 PLN02789 farnesyltranstransfer 97.9 3.5E-05 7.7E-10 66.5 7.0 53 3-64 89-141 (320)
73 KOG4162 Predicted calmodulin-b 97.9 2E-05 4.4E-10 75.4 6.0 52 4-66 738-789 (799)
74 PLN02789 farnesyltranstransfer 97.9 3.1E-05 6.7E-10 66.8 6.6 53 2-65 124-176 (320)
75 smart00028 TPR Tetratricopepti 97.9 2.6E-05 5.6E-10 40.8 3.9 33 21-64 2-34 (34)
76 PRK10866 outer membrane biogen 97.9 5E-05 1.1E-09 62.8 7.5 60 1-71 47-114 (243)
77 PF13176 TPR_7: Tetratricopept 97.9 1.7E-05 3.8E-10 47.4 3.5 29 22-61 1-29 (36)
78 KOG0624 dsRNA-activated protei 97.9 5E-05 1.1E-09 68.5 7.8 62 2-74 323-384 (504)
79 COG5010 TadD Flp pilus assembl 97.9 5.1E-05 1.1E-09 64.8 7.3 62 1-73 115-176 (257)
80 KOG1155 Anaphase-promoting com 97.8 4.8E-05 1E-09 70.1 7.3 74 2-86 346-440 (559)
81 PF13429 TPR_15: Tetratricopep 97.8 0.00019 4E-09 58.5 10.1 62 2-74 126-189 (280)
82 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 7.7E-05 1.7E-09 49.5 6.0 45 21-76 2-46 (53)
83 COG3063 PilF Tfp pilus assembl 97.8 6.6E-05 1.4E-09 63.8 6.9 53 2-65 51-103 (250)
84 PRK10153 DNA-binding transcrip 97.8 0.00011 2.4E-09 67.3 8.9 64 2-65 358-454 (517)
85 PF13429 TPR_15: Tetratricopep 97.8 7.7E-05 1.7E-09 60.7 7.0 33 2-34 162-194 (280)
86 PRK10803 tol-pal system protei 97.7 0.00013 2.9E-09 61.4 8.1 63 1-74 195-260 (263)
87 PRK10747 putative protoheme IX 97.7 0.00015 3.4E-09 63.0 8.5 65 2-77 310-374 (398)
88 PF13174 TPR_6: Tetratricopept 97.7 7E-05 1.5E-09 42.2 4.3 33 21-64 1-33 (33)
89 COG3063 PilF Tfp pilus assembl 97.7 0.00019 4.1E-09 61.0 8.2 33 2-34 85-117 (250)
90 KOG1127 TPR repeat-containing 97.7 9.1E-05 2E-09 73.0 6.8 55 1-65 17-71 (1238)
91 COG4235 Cytochrome c biogenesi 97.6 0.0002 4.2E-09 62.0 7.6 58 2-70 138-195 (287)
92 TIGR00540 hemY_coli hemY prote 97.6 0.00022 4.8E-09 62.0 8.0 63 2-75 315-381 (409)
93 KOG1174 Anaphase-promoting com 97.6 0.00019 4E-09 65.9 7.6 35 43-77 483-517 (564)
94 PRK11788 tetratricopeptide rep 97.6 0.00043 9.3E-09 57.7 9.0 26 46-71 297-322 (389)
95 KOG0548 Molecular co-chaperone 97.6 0.0002 4.3E-09 66.4 7.5 62 2-74 52-113 (539)
96 cd05804 StaR_like StaR_like; a 97.6 0.00018 3.9E-09 59.4 6.5 52 2-64 130-181 (355)
97 KOG1125 TPR repeat-containing 97.6 0.00015 3.1E-09 67.8 6.5 61 2-73 301-361 (579)
98 PF13432 TPR_16: Tetratricopep 97.6 0.00014 3.1E-09 46.9 4.7 34 24-68 1-34 (65)
99 KOG0547 Translocase of outer m 97.6 0.00015 3.3E-09 67.3 6.3 76 1-87 409-498 (606)
100 KOG2076 RNA polymerase III tra 97.5 0.00032 7E-09 68.1 8.0 59 2-64 155-240 (895)
101 PF12895 Apc3: Anaphase-promot 97.5 0.00011 2.5E-09 50.0 3.2 44 2-57 41-84 (84)
102 PRK11906 transcriptional regul 97.5 0.00041 8.9E-09 63.4 7.5 54 2-66 320-373 (458)
103 PRK14574 hmsH outer membrane p 97.4 0.00057 1.2E-08 66.0 8.7 53 1-64 117-169 (822)
104 PRK15331 chaperone protein Sic 97.4 0.0011 2.4E-08 53.4 8.7 73 2-86 53-142 (165)
105 KOG3060 Uncharacterized conser 97.4 0.00057 1.2E-08 59.1 7.3 53 4-67 138-190 (289)
106 KOG3364 Membrane protein invol 97.4 0.0029 6.2E-08 50.3 10.6 65 2-77 51-117 (149)
107 KOG4234 TPR repeat-containing 97.4 0.00075 1.6E-08 57.4 7.7 69 2-81 150-219 (271)
108 PF13424 TPR_12: Tetratricopep 97.3 0.00023 5.1E-09 47.4 3.5 32 18-60 3-34 (78)
109 PRK11906 transcriptional regul 97.3 0.00048 1E-08 63.0 6.2 53 2-65 354-406 (458)
110 PF14561 TPR_20: Tetratricopep 97.2 0.0031 6.7E-08 45.3 8.6 56 5-71 7-64 (90)
111 PF03704 BTAD: Bacterial trans 97.2 0.0026 5.7E-08 47.0 8.1 65 2-70 78-145 (146)
112 KOG0550 Molecular chaperone (D 97.2 0.00036 7.7E-09 63.7 3.8 53 2-65 185-237 (486)
113 cd05804 StaR_like StaR_like; a 97.1 0.0031 6.8E-08 52.0 8.9 63 2-65 59-148 (355)
114 PF12688 TPR_5: Tetratrico pep 97.1 0.0033 7.1E-08 47.5 8.2 53 2-65 17-72 (120)
115 PF13428 TPR_14: Tetratricopep 97.0 0.00074 1.6E-08 41.6 3.3 28 1-28 16-43 (44)
116 PRK14720 transcript cleavage f 97.0 0.0012 2.6E-08 64.7 6.3 63 1-75 131-193 (906)
117 PRK15331 chaperone protein Sic 97.0 0.0021 4.5E-08 51.8 6.2 53 1-65 86-138 (165)
118 PF13374 TPR_10: Tetratricopep 97.0 0.0016 3.6E-08 38.0 4.1 30 20-60 2-31 (42)
119 COG4235 Cytochrome c biogenesi 97.0 0.0028 6E-08 55.0 7.0 56 2-65 172-227 (287)
120 KOG0550 Molecular chaperone (D 96.9 0.0017 3.6E-08 59.4 5.5 52 2-64 265-320 (486)
121 KOG1173 Anaphase-promoting com 96.9 0.0032 6.9E-08 59.2 7.3 54 2-66 430-490 (611)
122 PF13512 TPR_18: Tetratricopep 96.8 0.0081 1.8E-07 47.2 8.1 66 2-78 26-99 (142)
123 PF13525 YfiO: Outer membrane 96.8 0.0039 8.4E-08 49.6 6.4 65 1-76 20-92 (203)
124 KOG3060 Uncharacterized conser 96.8 0.0057 1.2E-07 53.0 7.8 57 1-65 169-225 (289)
125 KOG1128 Uncharacterized conser 96.8 0.005 1.1E-07 59.3 8.0 53 2-65 501-553 (777)
126 COG4785 NlpI Lipoprotein NlpI, 96.8 0.0022 4.8E-08 55.1 5.0 51 4-65 83-133 (297)
127 KOG4648 Uncharacterized conser 96.8 0.0032 6.9E-08 57.2 6.1 72 1-72 112-206 (536)
128 KOG1156 N-terminal acetyltrans 96.7 0.0054 1.2E-07 58.4 7.3 76 3-89 58-136 (700)
129 KOG4507 Uncharacterized conser 96.7 0.004 8.6E-08 59.5 6.3 64 1-75 657-720 (886)
130 KOG2003 TPR repeat-containing 96.6 0.0029 6.2E-08 59.3 4.9 74 2-86 506-586 (840)
131 KOG4234 TPR repeat-containing 96.6 0.0096 2.1E-07 50.8 7.5 54 1-65 110-168 (271)
132 PF04733 Coatomer_E: Coatomer 96.6 0.0051 1.1E-07 52.4 5.9 55 2-66 217-271 (290)
133 TIGR00540 hemY_coli hemY prote 96.6 0.014 3E-07 50.8 8.7 63 5-78 244-315 (409)
134 PRK14720 transcript cleavage f 96.5 0.0067 1.4E-07 59.6 7.2 69 4-83 100-181 (906)
135 KOG4555 TPR repeat-containing 96.5 0.0063 1.4E-07 49.0 5.3 52 2-64 59-110 (175)
136 PF14559 TPR_19: Tetratricopep 96.4 0.0055 1.2E-07 39.4 4.1 39 44-82 4-56 (68)
137 COG1729 Uncharacterized protei 96.3 0.015 3.3E-07 49.9 7.3 66 2-88 157-225 (262)
138 KOG1840 Kinesin light chain [C 96.3 0.0056 1.2E-07 56.6 4.9 81 2-86 257-368 (508)
139 PF13371 TPR_9: Tetratricopept 96.3 0.004 8.7E-08 40.6 2.9 22 44-65 8-29 (73)
140 PRK14574 hmsH outer membrane p 96.3 0.016 3.5E-07 56.1 8.0 21 45-65 116-136 (822)
141 KOG0543 FKBP-type peptidyl-pro 96.2 0.02 4.2E-07 51.8 7.5 74 2-86 224-333 (397)
142 KOG3824 Huntingtin interacting 96.2 0.0081 1.7E-07 54.0 4.9 53 2-65 132-184 (472)
143 KOG0624 dsRNA-activated protei 96.0 0.016 3.5E-07 52.7 6.3 78 2-79 54-154 (504)
144 COG4783 Putative Zn-dependent 96.0 0.042 9.1E-07 50.8 9.0 54 2-66 356-409 (484)
145 PF09976 TPR_21: Tetratricopep 96.0 0.026 5.6E-07 42.1 6.4 44 2-56 64-110 (145)
146 KOG2076 RNA polymerase III tra 96.0 0.03 6.4E-07 54.9 8.2 51 1-62 222-272 (895)
147 PF13512 TPR_18: Tetratricopep 96.0 0.029 6.3E-07 44.1 6.7 70 1-70 62-138 (142)
148 PRK10866 outer membrane biogen 96.0 0.04 8.6E-07 45.6 7.9 71 1-71 84-164 (243)
149 KOG1129 TPR repeat-containing 96.0 0.036 7.7E-07 50.3 8.0 89 1-92 238-373 (478)
150 PRK10747 putative protoheme IX 95.9 0.041 8.8E-07 48.0 8.1 54 2-66 134-188 (398)
151 PF09976 TPR_21: Tetratricopep 95.9 0.082 1.8E-06 39.4 8.6 53 3-66 28-83 (145)
152 PF00515 TPR_1: Tetratricopept 95.8 0.0057 1.2E-07 35.0 1.7 19 1-19 16-34 (34)
153 KOG1129 TPR repeat-containing 95.8 0.01 2.2E-07 53.6 4.1 63 1-74 373-438 (478)
154 PF14938 SNAP: Soluble NSF att 95.8 0.0044 9.6E-08 51.5 1.6 51 2-62 90-146 (282)
155 COG0457 NrfG FOG: TPR repeat [ 95.8 0.046 1E-06 37.3 6.4 51 2-63 183-234 (291)
156 PF12569 NARP1: NMDA receptor- 95.8 0.04 8.7E-07 50.9 7.9 64 1-75 19-82 (517)
157 PF09295 ChAPs: ChAPs (Chs5p-A 95.7 0.037 8.1E-07 49.6 7.3 68 2-80 216-297 (395)
158 KOG4162 Predicted calmodulin-b 95.7 0.038 8.3E-07 53.6 7.7 53 3-66 667-719 (799)
159 KOG1127 TPR repeat-containing 95.7 0.033 7.2E-07 55.6 7.4 77 2-87 53-129 (1238)
160 KOG2002 TPR-containing nuclear 95.7 0.032 7E-07 55.2 7.1 58 1-66 214-271 (1018)
161 PF13525 YfiO: Outer membrane 95.6 0.049 1.1E-06 43.3 6.9 69 1-72 57-131 (203)
162 COG5010 TadD Flp pilus assembl 95.5 0.067 1.4E-06 46.0 7.7 61 2-73 150-210 (257)
163 COG0457 NrfG FOG: TPR repeat [ 95.5 0.072 1.6E-06 36.4 6.5 50 2-62 111-161 (291)
164 PF12688 TPR_5: Tetratrico pep 95.5 0.073 1.6E-06 40.2 7.1 62 1-75 53-117 (120)
165 PF07719 TPR_2: Tetratricopept 95.4 0.014 3.1E-07 32.8 2.4 19 1-19 16-34 (34)
166 COG2956 Predicted N-acetylgluc 95.4 0.046 1E-06 49.0 6.5 52 2-64 196-247 (389)
167 PF12569 NARP1: NMDA receptor- 95.3 0.046 1E-06 50.5 6.6 53 1-64 209-261 (517)
168 PF10373 EST1_DNA_bind: Est1 D 95.2 0.08 1.7E-06 42.5 7.0 61 5-76 1-62 (278)
169 KOG1174 Anaphase-promoting com 95.1 0.049 1.1E-06 50.5 6.0 79 1-90 419-510 (564)
170 PF02259 FAT: FAT domain; Int 95.1 0.086 1.9E-06 43.3 6.9 68 2-70 274-347 (352)
171 KOG0376 Serine-threonine phosp 95.1 0.035 7.6E-07 51.2 4.9 60 2-72 54-113 (476)
172 COG3071 HemY Uncharacterized e 95.0 0.1 2.3E-06 47.3 7.7 65 5-80 313-377 (400)
173 KOG2002 TPR-containing nuclear 94.9 0.068 1.5E-06 53.0 6.7 53 2-65 323-376 (1018)
174 COG4976 Predicted methyltransf 94.9 0.047 1E-06 47.2 4.9 52 3-65 12-63 (287)
175 KOG4642 Chaperone-dependent E3 94.9 0.11 2.5E-06 44.9 7.2 75 2-87 26-104 (284)
176 PF04733 Coatomer_E: Coatomer 94.8 0.11 2.5E-06 44.2 7.0 76 2-88 183-262 (290)
177 PF13431 TPR_17: Tetratricopep 94.6 0.033 7.2E-07 33.1 2.4 19 53-71 1-19 (34)
178 KOG0376 Serine-threonine phosp 94.1 0.073 1.6E-06 49.2 4.6 53 2-65 20-72 (476)
179 KOG1128 Uncharacterized conser 94.1 0.1 2.3E-06 50.5 5.8 52 2-64 535-586 (777)
180 COG4783 Putative Zn-dependent 94.0 0.25 5.4E-06 45.8 7.8 58 2-70 322-379 (484)
181 PF09295 ChAPs: ChAPs (Chs5p-A 93.9 0.11 2.5E-06 46.5 5.4 52 2-65 250-301 (395)
182 KOG1840 Kinesin light chain [C 93.9 0.088 1.9E-06 48.8 4.7 50 1-61 214-271 (508)
183 KOG4340 Uncharacterized conser 93.8 0.19 4.2E-06 45.3 6.6 56 2-68 26-81 (459)
184 KOG4648 Uncharacterized conser 93.8 0.041 8.9E-07 50.2 2.4 33 23-66 100-132 (536)
185 PRK10941 hypothetical protein; 93.8 0.37 8E-06 41.1 8.1 55 2-67 197-251 (269)
186 KOG2003 TPR repeat-containing 93.7 0.28 6.1E-06 46.4 7.7 63 3-65 575-660 (840)
187 KOG4642 Chaperone-dependent E3 93.7 0.09 2E-06 45.6 4.2 48 2-60 60-107 (284)
188 smart00745 MIT Microtubule Int 93.2 0.56 1.2E-05 31.8 6.7 65 2-85 5-73 (77)
189 KOG1130 Predicted G-alpha GTPa 93.1 0.091 2E-06 48.9 3.4 50 2-62 251-306 (639)
190 PF13281 DUF4071: Domain of un 93.0 0.49 1.1E-05 42.5 7.9 85 2-88 198-286 (374)
191 KOG1308 Hsp70-interacting prot 93.0 0.021 4.5E-07 51.2 -0.9 50 4-64 166-215 (377)
192 COG4785 NlpI Lipoprotein NlpI, 92.7 0.13 2.8E-06 44.5 3.6 66 2-78 115-185 (297)
193 PF07720 TPR_3: Tetratricopept 92.7 0.32 7E-06 29.7 4.4 33 21-64 2-36 (36)
194 KOG1586 Protein required for f 92.6 0.44 9.5E-06 41.4 6.7 78 2-89 89-185 (288)
195 COG2956 Predicted N-acetylgluc 92.0 0.58 1.3E-05 42.2 7.0 33 2-34 51-83 (389)
196 PF13181 TPR_8: Tetratricopept 91.8 0.12 2.6E-06 29.1 1.7 19 1-19 16-34 (34)
197 PF08424 NRDE-2: NRDE-2, neces 91.6 1.7 3.7E-05 37.3 9.3 60 6-65 5-65 (321)
198 KOG1308 Hsp70-interacting prot 91.6 0.28 6E-06 44.2 4.5 53 2-65 130-182 (377)
199 PF12862 Apc5: Anaphase-promot 91.5 0.77 1.7E-05 32.4 6.0 52 2-64 14-74 (94)
200 PF04212 MIT: MIT (microtubule 91.4 1.1 2.4E-05 29.9 6.4 46 1-65 1-46 (69)
201 cd02678 MIT_VPS4 MIT: domain c 91.2 1.4 3.1E-05 30.2 6.9 50 1-70 2-51 (75)
202 KOG0545 Aryl-hydrocarbon recep 91.2 0.55 1.2E-05 41.3 5.8 52 2-64 246-297 (329)
203 PF08238 Sel1: Sel1 repeat; I 91.2 0.83 1.8E-05 26.3 5.0 36 20-61 1-38 (39)
204 PF10516 SHNi-TPR: SHNi-TPR; 91.2 0.35 7.5E-06 30.0 3.4 31 20-61 1-31 (38)
205 KOG1156 N-terminal acetyltrans 91.0 0.78 1.7E-05 44.2 7.1 53 1-64 90-142 (700)
206 PF10300 DUF3808: Protein of u 90.9 0.64 1.4E-05 42.1 6.2 52 1-63 282-337 (468)
207 COG1729 Uncharacterized protei 90.8 1.3 2.9E-05 38.1 7.7 62 2-74 194-258 (262)
208 PF14938 SNAP: Soluble NSF att 90.6 0.58 1.3E-05 38.9 5.3 54 1-65 130-189 (282)
209 PF03704 BTAD: Bacterial trans 90.4 1.1 2.4E-05 32.9 6.1 46 44-89 75-127 (146)
210 COG4105 ComL DNA uptake lipopr 90.3 1.4 3E-05 37.9 7.4 60 2-72 50-117 (254)
211 cd02656 MIT MIT: domain contai 90.2 2.1 4.6E-05 29.0 7.0 46 1-65 2-47 (75)
212 PTZ00441 sporozoite surface pr 90.2 0.16 3.5E-06 47.9 1.8 35 109-143 501-535 (576)
213 PF04781 DUF627: Protein of un 90.2 1.8 4E-05 32.9 7.2 62 3-64 13-77 (111)
214 PLN03081 pentatricopeptide (PP 90.1 0.57 1.2E-05 43.4 5.3 49 2-61 510-558 (697)
215 smart00028 TPR Tetratricopepti 89.8 0.38 8.3E-06 24.1 2.4 19 1-19 16-34 (34)
216 KOG0551 Hsp90 co-chaperone CNS 89.6 1.5 3.2E-05 39.7 7.3 51 3-64 136-186 (390)
217 smart00671 SEL1 Sel1-like repe 89.4 0.76 1.6E-05 25.9 3.6 35 20-61 1-35 (36)
218 PF09986 DUF2225: Uncharacteri 89.1 1.4 3.1E-05 36.2 6.4 60 2-73 141-206 (214)
219 COG4105 ComL DNA uptake lipopr 88.6 2 4.3E-05 36.9 7.1 62 1-65 86-150 (254)
220 COG3629 DnrI DNA-binding trans 88.5 2.7 5.9E-05 36.4 8.0 76 2-81 169-244 (280)
221 KOG1130 Predicted G-alpha GTPa 88.5 0.58 1.3E-05 43.8 4.0 48 2-60 291-344 (639)
222 PLN03081 pentatricopeptide (PP 88.1 1.4 3.1E-05 40.9 6.4 60 2-75 376-437 (697)
223 KOG2471 TPR repeat-containing 88.1 0.74 1.6E-05 43.7 4.5 53 2-65 299-369 (696)
224 KOG4555 TPR repeat-containing 87.9 4.4 9.6E-05 32.8 8.2 66 2-71 93-167 (175)
225 cd02680 MIT_calpain7_2 MIT: do 87.6 0.91 2E-05 32.1 3.7 16 45-60 20-35 (75)
226 PLN03218 maturation of RBCL 1; 87.4 4.6 9.9E-05 40.6 9.8 63 2-75 595-660 (1060)
227 KOG1310 WD40 repeat protein [G 87.2 0.88 1.9E-05 43.6 4.5 65 4-79 429-493 (758)
228 PLN03077 Protein ECB2; Provisi 86.7 2.6 5.7E-05 40.0 7.4 55 2-71 540-596 (857)
229 PF07721 TPR_4: Tetratricopept 86.7 0.9 2E-05 25.1 2.7 25 21-56 2-26 (26)
230 cd02683 MIT_1 MIT: domain cont 86.5 4.5 9.8E-05 28.3 6.8 45 2-65 3-47 (77)
231 cd02679 MIT_spastin MIT: domai 86.2 1.1 2.4E-05 32.0 3.6 36 44-79 2-43 (79)
232 cd02682 MIT_AAA_Arch MIT: doma 86.1 3.8 8.2E-05 29.1 6.2 45 3-66 4-48 (75)
233 cd02681 MIT_calpain7_1 MIT: do 85.4 6.1 0.00013 27.8 7.0 40 3-61 4-43 (76)
234 PLN03218 maturation of RBCL 1; 84.7 5.9 0.00013 39.9 9.0 78 2-91 700-783 (1060)
235 KOG0546 HSP90 co-chaperone CPR 84.7 0.69 1.5E-05 41.7 2.4 59 4-73 293-351 (372)
236 PF05843 Suf: Suppressor of fo 84.4 3.2 7E-05 34.7 6.2 55 5-70 55-113 (280)
237 KOG0495 HAT repeat protein [RN 84.4 1.9 4.1E-05 42.3 5.3 73 2-74 667-763 (913)
238 PRK04841 transcriptional regul 84.3 1.8 3.9E-05 40.7 5.1 53 2-65 707-765 (903)
239 PLN03077 Protein ECB2; Provisi 83.4 3.1 6.7E-05 39.5 6.3 48 2-60 673-720 (857)
240 KOG4340 Uncharacterized conser 83.4 3.2 6.9E-05 37.7 6.0 48 1-59 159-206 (459)
241 PF12309 KBP_C: KIF-1 binding 83.4 4.3 9.4E-05 36.1 6.8 62 3-66 266-344 (371)
242 PF04184 ST7: ST7 protein; In 83.0 2.7 5.9E-05 39.6 5.6 92 2-94 275-389 (539)
243 PF04184 ST7: ST7 protein; In 83.0 1.5 3.2E-05 41.3 3.8 54 3-62 185-238 (539)
244 KOG2396 HAT (Half-A-TPR) repea 81.4 5.8 0.00013 37.6 7.0 54 3-66 122-175 (568)
245 KOG3081 Vesicle coat complex C 81.3 9.3 0.0002 33.7 7.9 33 2-34 223-255 (299)
246 COG4700 Uncharacterized protei 81.0 3.5 7.5E-05 35.2 5.0 44 4-59 74-117 (251)
247 KOG0529 Protein geranylgeranyl 80.5 8.7 0.00019 35.4 7.7 67 2-77 91-161 (421)
248 PRK04841 transcriptional regul 79.4 5.5 0.00012 37.5 6.3 50 2-62 468-522 (903)
249 KOG0551 Hsp90 co-chaperone CNS 79.1 9.6 0.00021 34.6 7.4 53 2-65 97-153 (390)
250 KOG3785 Uncharacterized conser 78.9 8.9 0.00019 35.6 7.3 56 2-68 167-222 (557)
251 KOG1586 Protein required for f 78.8 4.5 9.8E-05 35.3 5.1 76 2-86 30-108 (288)
252 PF09613 HrpB1_HrpK: Bacterial 78.8 16 0.00034 29.4 7.9 54 2-66 26-79 (160)
253 PF04781 DUF627: Protein of un 78.5 5.5 0.00012 30.3 5.0 48 3-61 61-108 (111)
254 cd02677 MIT_SNX15 MIT: domain 78.4 7.8 0.00017 27.1 5.4 44 2-64 3-46 (75)
255 PF04910 Tcf25: Transcriptiona 78.0 7.5 0.00016 34.3 6.5 46 10-59 30-75 (360)
256 KOG2053 Mitochondrial inherita 77.7 8.1 0.00018 38.7 7.1 21 45-65 91-111 (932)
257 PF14853 Fis1_TPR_C: Fis1 C-te 77.7 2.6 5.7E-05 27.7 2.7 27 1-27 16-42 (53)
258 KOG0739 AAA+-type ATPase [Post 77.4 19 0.0004 32.9 8.7 66 2-86 7-77 (439)
259 COG4455 ImpE Protein of avirul 76.9 13 0.00028 32.3 7.3 61 2-73 17-81 (273)
260 cd02684 MIT_2 MIT: domain cont 76.8 13 0.00028 25.8 6.2 44 2-64 3-46 (75)
261 KOG1550 Extracellular protein 76.6 7.1 0.00015 36.1 6.1 62 2-71 265-333 (552)
262 COG2912 Uncharacterized conser 76.5 8.6 0.00019 33.3 6.2 54 2-66 197-250 (269)
263 PF11846 DUF3366: Domain of un 76.4 18 0.0004 28.2 7.7 51 2-64 127-177 (193)
264 KOG1941 Acetylcholine receptor 74.9 5.6 0.00012 36.9 4.9 51 21-82 123-193 (518)
265 cd02682 MIT_AAA_Arch MIT: doma 74.8 2.3 5E-05 30.2 1.9 18 42-59 17-34 (75)
266 TIGR03504 FimV_Cterm FimV C-te 74.6 12 0.00026 23.8 5.0 40 23-74 2-41 (44)
267 PF10300 DUF3808: Protein of u 73.8 7.2 0.00016 35.4 5.3 49 2-61 249-297 (468)
268 PF08424 NRDE-2: NRDE-2, neces 73.8 14 0.0003 31.7 6.8 53 2-65 47-99 (321)
269 PF09986 DUF2225: Uncharacteri 73.5 20 0.00043 29.4 7.4 60 2-63 93-157 (214)
270 PF10579 Rapsyn_N: Rapsyn N-te 72.8 19 0.0004 26.1 6.2 50 2-59 22-71 (80)
271 COG3947 Response regulator con 72.8 14 0.0003 33.3 6.6 60 2-65 295-354 (361)
272 PF11044 TMEMspv1-c74-12: Plec 72.7 3.5 7.6E-05 27.2 2.2 14 126-139 11-24 (49)
273 KOG2376 Signal recognition par 72.6 9 0.0002 36.9 5.8 33 1-33 27-59 (652)
274 PF04212 MIT: MIT (microtubule 72.6 3.4 7.3E-05 27.5 2.3 14 45-58 19-32 (69)
275 PF12753 Nro1: Nuclear pore co 72.4 10 0.00023 34.7 6.0 68 2-73 334-402 (404)
276 PF05843 Suf: Suppressor of fo 71.9 14 0.00031 30.9 6.4 54 2-65 17-70 (280)
277 KOG1585 Protein required for f 71.7 13 0.00029 32.7 6.2 72 2-84 9-104 (308)
278 KOG0495 HAT repeat protein [RN 71.5 17 0.00037 36.0 7.4 47 7-64 804-850 (913)
279 COG2976 Uncharacterized protei 70.7 17 0.00037 30.6 6.4 29 44-73 172-200 (207)
280 KOG4279 Serine/threonine prote 70.3 8.1 0.00017 38.8 5.0 89 3-93 260-352 (1226)
281 PF11732 Thoc2: Transcription- 70.1 2.3 5E-05 30.3 1.1 16 113-128 35-50 (77)
282 COG5191 Uncharacterized conser 69.6 6.1 0.00013 36.0 3.8 55 1-66 122-177 (435)
283 PF13281 DUF4071: Domain of un 69.3 18 0.0004 32.6 6.8 62 2-64 242-338 (374)
284 COG3914 Spy Predicted O-linked 68.7 27 0.00059 33.6 8.0 53 3-65 84-136 (620)
285 KOG1941 Acetylcholine receptor 68.7 6.3 0.00014 36.5 3.8 51 2-63 138-194 (518)
286 COG0790 FOG: TPR repeat, SEL1 68.2 24 0.00052 28.7 6.8 53 2-63 93-145 (292)
287 cd02681 MIT_calpain7_1 MIT: do 67.7 4.7 0.0001 28.4 2.2 19 43-61 18-36 (76)
288 PF07079 DUF1347: Protein of u 67.4 27 0.00059 33.1 7.6 60 2-76 478-541 (549)
289 KOG2796 Uncharacterized conser 67.3 11 0.00024 33.7 4.9 76 2-88 268-347 (366)
290 smart00386 HAT HAT (Half-A-TPR 67.2 13 0.00029 19.6 3.6 25 2-26 3-27 (33)
291 cd02683 MIT_1 MIT: domain cont 67.0 5 0.00011 28.1 2.2 15 45-59 20-34 (77)
292 smart00745 MIT Microtubule Int 66.7 5.8 0.00013 26.7 2.5 37 46-83 4-40 (77)
293 KOG2376 Signal recognition par 66.6 11 0.00023 36.5 4.9 43 2-56 474-516 (652)
294 KOG3785 Uncharacterized conser 66.1 25 0.00054 32.8 7.0 68 2-80 38-120 (557)
295 COG0790 FOG: TPR repeat, SEL1 65.7 22 0.00048 28.9 6.2 58 3-69 172-229 (292)
296 cd02679 MIT_spastin MIT: domai 65.7 40 0.00086 24.0 6.7 42 2-62 5-46 (79)
297 COG3071 HemY Uncharacterized e 65.6 17 0.00038 33.2 5.9 45 2-58 344-388 (400)
298 cd02680 MIT_calpain7_2 MIT: do 65.0 7.1 0.00015 27.6 2.7 34 46-80 2-35 (75)
299 cd02678 MIT_VPS4 MIT: domain c 65.0 6.6 0.00014 26.9 2.5 35 47-82 3-37 (75)
300 KOG3081 Vesicle coat complex C 65.0 33 0.00072 30.3 7.3 61 2-73 189-249 (299)
301 KOG0545 Aryl-hydrocarbon recep 64.9 23 0.00051 31.3 6.4 27 44-70 243-271 (329)
302 COG3118 Thioredoxin domain-con 64.8 39 0.00084 30.0 7.7 58 6-74 222-282 (304)
303 PF09797 NatB_MDM20: N-acetylt 64.3 20 0.00044 30.9 6.0 43 2-55 199-241 (365)
304 COG4700 Uncharacterized protei 64.0 42 0.00091 28.8 7.5 53 2-64 105-157 (251)
305 PF02259 FAT: FAT domain; Int 62.9 36 0.00078 27.8 6.9 23 44-66 271-293 (352)
306 KOG1585 Protein required for f 62.8 15 0.00033 32.4 4.8 28 2-30 47-74 (308)
307 PRK10941 hypothetical protein; 62.2 22 0.00048 30.4 5.7 32 23-65 184-215 (269)
308 cd02677 MIT_SNX15 MIT: domain 62.2 9.2 0.0002 26.7 2.8 37 46-83 2-38 (75)
309 KOG0530 Protein farnesyltransf 62.1 74 0.0016 28.3 8.9 79 3-92 60-143 (318)
310 KOG2610 Uncharacterized conser 58.7 19 0.0004 33.3 4.8 44 2-56 191-234 (491)
311 KOG4814 Uncharacterized conser 58.4 42 0.00092 33.2 7.4 54 2-66 370-429 (872)
312 COG3118 Thioredoxin domain-con 58.0 39 0.00085 29.9 6.6 33 2-34 150-182 (304)
313 KOG3807 Predicted membrane pro 56.6 46 0.001 30.9 7.0 64 3-81 201-264 (556)
314 KOG3824 Huntingtin interacting 56.3 11 0.00023 34.5 2.9 23 44-66 129-151 (472)
315 KOG1464 COP9 signalosome, subu 55.7 48 0.001 30.0 6.8 59 2-64 43-105 (440)
316 PF08780 NTase_sub_bind: Nucle 53.9 20 0.00042 27.0 3.6 49 45-93 4-55 (124)
317 KOG2008 BTK-associated SH3-dom 53.9 1E+02 0.0022 28.1 8.6 84 3-102 161-245 (426)
318 PF10814 DUF2562: Protein of u 53.5 2.4 5.2E-05 33.3 -1.4 24 128-151 102-125 (133)
319 PF13226 DUF4034: Domain of un 53.4 55 0.0012 28.4 6.7 61 5-65 62-133 (277)
320 PF10602 RPN7: 26S proteasome 53.2 21 0.00045 28.2 3.8 34 20-64 36-69 (177)
321 smart00299 CLH Clathrin heavy 52.5 82 0.0018 22.8 6.7 64 2-77 23-95 (140)
322 cd02656 MIT MIT: domain contai 51.5 15 0.00033 24.7 2.4 32 48-80 4-35 (75)
323 KOG4507 Uncharacterized conser 51.4 36 0.00077 33.5 5.6 72 4-86 625-718 (886)
324 PF11753 DUF3310: Protein of u 51.3 15 0.00032 24.6 2.3 47 4-56 14-60 (60)
325 TIGR01987 HI0074 nucleotidyltr 49.0 41 0.0009 25.6 4.7 49 45-93 3-53 (123)
326 cd09246 BRO1_Alix_like_1 Prote 48.9 16 0.00034 32.1 2.7 40 19-58 110-154 (353)
327 cd09244 BRO1_Rhophilin Protein 48.7 14 0.0003 32.8 2.4 37 19-57 105-141 (350)
328 PF06936 Selenoprotein_S: Sele 48.0 6 0.00013 32.5 0.0 18 123-140 36-53 (190)
329 PF15100 TMEM187: TMEM187 prot 48.0 16 0.00034 31.4 2.5 26 115-140 77-102 (242)
330 PF09548 Spore_III_AB: Stage I 47.2 41 0.00088 26.4 4.6 53 2-59 89-141 (170)
331 PF03097 BRO1: BRO1-like domai 46.9 20 0.00043 30.9 3.0 41 20-60 107-152 (377)
332 cd02684 MIT_2 MIT: domain cont 46.4 21 0.00046 24.7 2.6 16 47-62 3-18 (75)
333 PF11601 Shal-type: Shal-type 46.0 5.1 0.00011 23.7 -0.5 24 122-145 3-27 (28)
334 PF11169 DUF2956: Protein of u 45.8 16 0.00034 27.7 1.9 16 121-139 83-98 (103)
335 cd00922 Cyt_c_Oxidase_IV Cytoc 45.6 28 0.0006 27.0 3.4 31 117-148 73-105 (136)
336 PF11460 DUF3007: Protein of u 45.5 16 0.00034 27.7 1.9 12 126-137 40-51 (104)
337 PRK15374 pathogenicity island 45.3 16 0.00034 35.0 2.3 16 121-136 319-334 (593)
338 PRK05077 frsA fermentation/res 45.3 86 0.0019 27.8 6.8 59 22-80 100-163 (414)
339 PF09670 Cas_Cas02710: CRISPR- 44.8 66 0.0014 28.5 6.0 50 2-60 147-198 (379)
340 PF10579 Rapsyn_N: Rapsyn N-te 44.6 58 0.0013 23.5 4.6 39 45-83 20-75 (80)
341 PF11587 Prion_bPrPp: Major pr 44.1 14 0.0003 22.1 1.1 20 121-141 5-26 (29)
342 KOG1550 Extracellular protein 44.0 41 0.00089 31.1 4.8 52 2-64 491-542 (552)
343 cd09239 BRO1_HD-PTP_like Prote 44.0 20 0.00043 31.7 2.6 41 19-59 113-158 (361)
344 KOG1070 rRNA processing protei 43.5 1.3E+02 0.0027 32.4 8.4 31 1-31 1473-1511(1710)
345 COG0182 Predicted translation 43.4 40 0.00087 30.4 4.4 70 3-89 74-144 (346)
346 PF01535 PPR: PPR repeat; Int 43.3 49 0.0011 17.3 3.3 27 23-60 3-29 (31)
347 cd09242 BRO1_ScBro1_like Prote 42.7 19 0.00042 31.4 2.3 37 19-57 106-142 (348)
348 PF02064 MAS20: MAS20 protein 42.5 46 0.001 25.5 4.1 30 25-65 68-97 (121)
349 KOG4449 Translocase of outer m 42.5 19 0.00041 24.3 1.7 19 123-145 24-42 (53)
350 PF04888 SseC: Secretion syste 41.8 24 0.00052 29.8 2.7 20 117-136 56-75 (306)
351 PF08631 SPO22: Meiosis protei 41.0 52 0.0011 27.4 4.6 49 2-60 9-65 (278)
352 cd09248 BRO1_Rhophilin_1 Prote 40.7 18 0.00039 32.8 1.8 37 19-57 105-141 (384)
353 PHA01080 hypothetical protein 40.3 27 0.00058 25.3 2.3 20 122-141 56-76 (80)
354 PF14863 Alkyl_sulf_dimr: Alky 39.3 94 0.002 24.2 5.5 34 2-35 86-119 (141)
355 TIGR02561 HrpB1_HrpK type III 39.2 1.6E+02 0.0034 23.7 6.8 58 2-71 26-83 (153)
356 PF01239 PPTA: Protein prenylt 39.1 72 0.0016 17.8 3.9 28 4-31 1-28 (31)
357 COG3629 DnrI DNA-binding trans 38.7 93 0.002 27.0 5.9 30 45-74 167-197 (280)
358 PF10345 Cohesin_load: Cohesin 38.3 91 0.002 29.0 6.1 41 19-70 403-451 (608)
359 PLN03184 chloroplast Hsp70; Pr 38.3 1.4E+02 0.003 28.6 7.4 31 41-72 591-621 (673)
360 PF13041 PPR_2: PPR repeat fam 38.2 91 0.002 18.8 5.9 43 21-74 4-48 (50)
361 KOG2053 Mitochondrial inherita 37.6 1.1E+02 0.0023 31.2 6.6 53 2-66 93-145 (932)
362 PF10345 Cohesin_load: Cohesin 37.5 1.1E+02 0.0023 28.6 6.4 54 2-65 37-94 (608)
363 PF02038 ATP1G1_PLM_MAT8: ATP1 37.1 38 0.00083 22.5 2.5 9 114-122 3-11 (50)
364 KOG2997 F-box protein FBX9 [Ge 36.4 31 0.00068 31.2 2.6 25 44-68 32-57 (366)
365 PF13446 RPT: A repeated domai 36.1 54 0.0012 21.4 3.2 30 48-77 20-50 (62)
366 cd09249 BRO1_Rhophilin_2 Prote 36.1 20 0.00043 32.6 1.4 17 19-35 105-121 (385)
367 PF10855 DUF2648: Protein of u 35.6 29 0.00063 21.3 1.6 15 126-140 6-20 (33)
368 PF09753 Use1: Membrane fusion 35.6 33 0.00072 28.4 2.6 17 122-138 228-244 (251)
369 cd09241 BRO1_ScRim20-like Prot 35.4 31 0.00068 30.1 2.5 40 20-59 106-150 (355)
370 PF12583 TPPII_N: Tripeptidyl 35.1 49 0.0011 26.3 3.3 46 45-90 73-122 (139)
371 PF12854 PPR_1: PPR repeat 34.9 82 0.0018 18.1 3.5 25 21-56 8-32 (34)
372 PF00244 14-3-3: 14-3-3 protei 34.6 1.6E+02 0.0034 24.4 6.4 39 27-66 123-166 (236)
373 KOG1310 WD40 repeat protein [G 34.5 1.2E+02 0.0025 29.8 6.2 55 3-65 391-445 (758)
374 PF14155 DUF4307: Domain of un 34.5 37 0.00079 25.3 2.4 20 126-145 14-33 (112)
375 TIGR00756 PPR pentatricopeptid 34.2 75 0.0016 16.6 3.6 16 45-60 14-29 (35)
376 PRK08307 stage III sporulation 34.2 88 0.0019 24.8 4.7 53 2-59 90-142 (171)
377 PF02936 COX4: Cytochrome c ox 33.7 34 0.00075 26.7 2.2 28 119-146 74-102 (142)
378 KOG0890 Protein kinase of the 33.5 1.5E+02 0.0032 33.2 7.3 61 2-65 1399-1483(2382)
379 cd09240 BRO1_Alix Protein-inte 33.5 37 0.0008 29.6 2.6 41 19-59 118-163 (346)
380 PF12925 APP_E2: E2 domain of 32.8 86 0.0019 26.0 4.5 22 44-65 110-131 (193)
381 cd09247 BRO1_Alix_like_2 Prote 32.8 45 0.00097 29.1 3.0 40 20-59 113-155 (346)
382 KOG3386 Copper transporter [In 32.7 34 0.00073 27.2 2.1 18 123-140 120-137 (155)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 32.3 1.3E+02 0.0028 22.5 5.1 46 4-58 81-126 (126)
384 PF14863 Alkyl_sulf_dimr: Alky 32.2 1.8E+02 0.0039 22.6 6.0 29 44-72 83-111 (141)
385 PF11207 DUF2989: Protein of u 31.7 99 0.0021 25.8 4.7 34 19-64 140-173 (203)
386 smart00101 14_3_3 14-3-3 homol 31.7 2.4E+02 0.0052 23.9 7.1 62 4-66 98-168 (244)
387 KOG1915 Cell cycle control pro 31.6 1.5E+02 0.0032 28.7 6.3 49 2-61 453-501 (677)
388 PF12968 DUF3856: Domain of Un 31.4 2E+02 0.0043 23.0 6.1 60 1-64 24-95 (144)
389 PF08631 SPO22: Meiosis protei 31.4 68 0.0015 26.7 3.8 27 21-58 247-273 (278)
390 KOG2796 Uncharacterized conser 31.0 2E+02 0.0042 26.0 6.6 62 3-68 194-289 (366)
391 smart00101 14_3_3 14-3-3 homol 30.7 1.2E+02 0.0026 25.7 5.2 63 2-71 144-217 (244)
392 cd09245 BRO1_UmRIM23-like Prot 30.6 40 0.00087 30.5 2.4 16 20-35 117-132 (413)
393 PF10255 Paf67: RNA polymerase 30.5 55 0.0012 29.9 3.3 29 19-58 163-191 (404)
394 PF10373 EST1_DNA_bind: Est1 D 30.4 36 0.00077 27.1 1.9 15 50-64 1-15 (278)
395 KOG2581 26S proteasome regulat 30.3 50 0.0011 31.0 3.0 34 20-64 247-280 (493)
396 PHA02898 virion envelope prote 30.0 69 0.0015 23.8 3.1 28 111-138 35-62 (92)
397 COG3914 Spy Predicted O-linked 29.8 1.4E+02 0.0031 29.0 5.9 56 5-65 121-176 (620)
398 cd09034 BRO1_Alix_like Protein 29.7 60 0.0013 27.6 3.2 41 19-59 110-156 (345)
399 PF11817 Foie-gras_1: Foie gra 29.6 1.1E+02 0.0023 25.2 4.6 29 21-60 179-207 (247)
400 PF04053 Coatomer_WDAD: Coatom 29.4 94 0.002 28.4 4.6 70 9-89 334-414 (443)
401 PF10953 DUF2754: Protein of u 29.3 9.9 0.00022 26.5 -1.3 18 119-136 32-49 (70)
402 TIGR02833 spore_III_AB stage I 28.1 1.2E+02 0.0027 23.9 4.6 53 2-59 89-141 (170)
403 PRK14762 membrane protein; Pro 27.8 54 0.0012 19.2 1.8 14 122-135 3-16 (27)
404 PF05053 Menin: Menin; InterP 27.4 2.6E+02 0.0056 27.2 7.2 71 4-88 297-379 (618)
405 PF00244 14-3-3: 14-3-3 protei 27.3 1.2E+02 0.0025 25.2 4.4 26 2-30 142-172 (236)
406 PF12968 DUF3856: Domain of Un 27.3 2.1E+02 0.0045 22.8 5.6 45 5-60 81-129 (144)
407 KOG2610 Uncharacterized conser 27.0 1.6E+02 0.0035 27.4 5.6 67 4-70 121-214 (491)
408 PRK00575 tatA twin arginine tr 26.9 36 0.00079 25.2 1.2 20 121-140 3-22 (92)
409 PHA02537 M terminase endonucle 26.5 53 0.0011 27.8 2.3 20 45-64 192-211 (230)
410 PF09125 COX2-transmemb: Cytoc 26.4 78 0.0017 20.0 2.5 9 123-131 14-22 (38)
411 PF08159 NUC153: NUC153 domain 25.8 38 0.00083 20.1 1.0 15 57-71 12-26 (30)
412 PF14555 UBA_4: UBA-like domai 25.7 1.3E+02 0.0028 18.3 3.5 37 3-55 1-37 (43)
413 PF05767 Pox_A14: Poxvirus vir 25.6 93 0.002 23.1 3.2 28 111-138 35-62 (92)
414 TIGR01280 xseB exodeoxyribonuc 25.5 1.4E+02 0.003 20.4 3.8 13 2-14 3-15 (67)
415 PF14316 DUF4381: Domain of un 25.4 66 0.0014 24.5 2.5 19 119-137 17-35 (146)
416 KOG1915 Cell cycle control pro 24.8 5.7E+02 0.012 24.9 8.9 52 2-64 299-355 (677)
417 PHA03326 nuclear egress membra 24.8 4.6E+02 0.01 23.0 7.7 28 120-147 245-272 (275)
418 PF09656 PGPGW: Putative trans 24.8 60 0.0013 21.6 1.9 14 121-134 5-18 (53)
419 COG4976 Predicted methyltransf 24.2 59 0.0013 28.5 2.2 70 2-74 45-118 (287)
420 PRK13184 pknD serine/threonine 24.0 3.1E+02 0.0067 27.8 7.4 79 2-80 491-588 (932)
421 PRK00191 tatA twin arginine tr 23.9 50 0.0011 24.1 1.5 23 121-143 2-24 (84)
422 PRK00977 exodeoxyribonuclease 23.7 1.5E+02 0.0032 20.9 3.8 12 2-13 12-23 (80)
423 KOG3026 Splicing factor SPF30 23.7 1.5E+02 0.0033 25.7 4.6 44 44-87 5-48 (262)
424 PHA02898 virion envelope prote 23.5 61 0.0013 24.1 1.9 23 122-144 16-39 (92)
425 PHA02680 ORF090 IMV phosphoryl 23.4 88 0.0019 23.2 2.7 24 122-145 16-40 (91)
426 PF02184 HAT: HAT (Half-A-TPR) 23.4 1.5E+02 0.0032 17.9 3.2 22 46-67 2-23 (32)
427 PRK05771 V-type ATP synthase s 23.0 54 0.0012 30.8 1.9 25 111-135 470-494 (646)
428 PF01350 Flavi_NS4A: Flaviviru 22.9 1.3E+02 0.0028 24.0 3.7 45 45-89 15-59 (144)
429 cd00280 TRFH Telomeric Repeat 22.9 1.4E+02 0.0031 25.1 4.1 43 44-87 124-167 (200)
430 PF13830 DUF4192: Domain of un 22.6 2.2E+02 0.0048 24.3 5.4 59 5-74 257-317 (324)
431 COG5091 SGT1 Suppressor of G2 22.5 1.7E+02 0.0036 26.4 4.7 51 3-64 56-112 (368)
432 PRK08455 fliL flagellar basal 22.2 1.1E+02 0.0024 24.7 3.3 30 111-140 12-44 (182)
433 PF02609 Exonuc_VII_S: Exonucl 22.1 1.9E+02 0.0042 18.4 3.9 13 2-14 1-13 (53)
434 PF14798 Ca_hom_mod: Calcium h 21.8 64 0.0014 27.5 2.0 15 122-136 180-194 (251)
435 PF13556 HTH_30: PucR C-termin 21.7 1.6E+02 0.0034 19.0 3.4 26 6-31 33-58 (59)
436 PF09205 DUF1955: Domain of un 21.6 2.7E+02 0.0059 22.6 5.3 33 16-59 116-148 (161)
437 cd09243 BRO1_Brox_like Protein 21.4 56 0.0012 29.0 1.6 13 20-32 109-121 (353)
438 PF15651 Tox-SGS: Salivary gla 21.1 79 0.0017 23.8 2.1 18 119-136 75-93 (100)
439 PF02071 NSF: Aromatic-di-Alan 20.9 43 0.00093 16.1 0.4 9 46-54 4-12 (12)
440 cd01324 cbb3_Oxidase_CcoQ Cyto 20.7 1.1E+02 0.0023 19.7 2.4 10 127-136 21-30 (48)
441 PF03669 UPF0139: Uncharacteri 20.7 81 0.0017 23.4 2.1 21 118-138 49-69 (103)
442 PRK15244 virulence protein Spv 20.6 50 0.0011 31.8 1.2 39 114-152 329-374 (591)
443 COG2707 Predicted membrane pro 20.6 83 0.0018 25.3 2.2 16 122-137 83-99 (151)
444 PRK14069 exodeoxyribonuclease 20.4 1.8E+02 0.0038 21.6 3.8 13 2-14 10-22 (95)
445 PRK14756 hypothetical protein; 20.4 1.3E+02 0.0028 17.9 2.5 21 115-135 2-22 (29)
446 PRK14067 exodeoxyribonuclease 20.0 1.9E+02 0.0042 20.5 3.8 12 2-13 9-20 (80)
No 1
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=100.00 E-value=3.1e-61 Score=388.64 Aligned_cols=137 Identities=80% Similarity=1.221 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel 80 (152)
||+|||++|++||.|||++|+|+|||||||++++|++||..+|++.|++|.+||++|+++||+|++||++|+|+.|||||
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~l 129 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPEL 129 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhccCCCCCCCCCCCCCCCccccccccCCCchhhhhhHHHHHHHHHHHHHhhh
Q 031846 81 HMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 81 ~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~k~~sd~~ydv~gw~il~~~iv~wv~~a~ 140 (152)
|+|||||+++||++| ++++++++.|++||||+|||||||+|||||++|||+||||||
T Consensus 130 h~e~~~~~~~~q~~~---~~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~givawv~~ak 186 (186)
T PF06552_consen 130 HMEIHKQGLGQQAMG---GASSSSSSAKSSKKKKSSDFKYDVFGWVILAVGIVAWVGMAK 186 (186)
T ss_dssp HHHHHHSSS---------------------------------------------------
T ss_pred HHHHHHHHhhhhhcc---CCCCCCCCccccccccccchhhhhcchHHHHHHHHHHHhhcC
Confidence 999999999999864 346666777899999999999999999999999999999997
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.8e-13 Score=116.05 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kap 78 (152)
|+++||..++.||.|||.+..||..||.||+.+| +|++|++.|+|||++||+|+.|+..|+.+++..
T Consensus 130 ~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g-----------k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 130 EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG-----------KYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC-----------cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999865 999999999999999999999999999987654
No 3
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.21 E-value=3.5e-11 Score=78.88 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
+++|+..|++||++||++..+|+++|.+|..+| +++++|+.+|++|+++||
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~----------~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG----------KDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT----------THHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----------ccHHHHHHHHHHHHHcCc
Confidence 789999999999999999999999999999753 279999999999999999
No 4
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.19 E-value=5.8e-11 Score=77.33 Aligned_cols=53 Identities=25% Similarity=0.502 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++|+.+|++.++++.||.++..+| ++++|+.+|+++++++|+|+
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCC
Confidence 689999999999999999999999999999865 99999999999999999985
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.08 E-value=5.6e-10 Score=84.63 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++++.++|.+.++|++||.++..+ +++++|+.+|++|++++|++.
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-----------g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-----------KEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHhcCCCCc
Confidence 56777777777777777777777777777754 477777777777777777774
No 6
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.06 E-value=5.3e-10 Score=72.82 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
+++|+..|++++..+|++.++++.|+.+|...| ++++|..++++++..+|+|+.|+..+.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999999999999999865 999999999999999999999887764
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.04 E-value=1.5e-09 Score=82.36 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
.+++|+..|++|++++|++.+++++||.+|..+| ++++|+.+|++|++++|+|..|...+..+
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g-----------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG-----------EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3789999999999999999999999999999765 99999999999999999998877666544
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.04 E-value=4.6e-10 Score=105.69 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+.+||.+|++|++|||+..+||+||||+|... ..|++|+.||+||+.+.|++.
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-----------~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-----------RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-----------hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH
Confidence 67899999999999999999999999999864 489999999999999999884
Q ss_pred -----HHHHHHHHHhcCchhhHHHHHhhhccCC
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQT 93 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~~~~~q~~ 93 (152)
.|+++|++.+.-|+.+-++.+.+-..|.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 5999999999999999999888866654
No 9
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.96 E-value=4.1e-09 Score=69.46 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
.+++|+..++++|+++|+++.+++.+|.+|...| +|++|+++|+++++++|++........+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLG-----------RYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3789999999999999999999999999999864 9999999999999999999887766654
No 10
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=9.5e-09 Score=82.17 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.++++..|+++|+.||++.++|+.||.+|... +++++|+.+|++|++++|+|..
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~-----------g~~~~A~~a~~~Al~l~P~~~~ 108 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWR-----------NDYDNALLAYRQALQLRGENAE 108 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHH
Confidence 47899999999999999999999999999875 4999999999999999999963
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=4.8e-09 Score=87.64 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++||+++|+++++|++||.+|...| ++++|+++|++|++++|++.
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 578999999999999999999999999998765 99999999999999999986
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=1.3e-08 Score=87.95 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+++|+..|++||+++|++..+|+++|.+|..+| ++++|+.+|++||+++|++.
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 567777777777777777777777777777654 77777777777777777764
Q ss_pred -----HHHHHHHHHhcCchhhHHHHH
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~ 86 (152)
.|++++++.+..++++..+.+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355556666666666665555
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.85 E-value=1.1e-08 Score=73.69 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++++.++|++.++++++|.+|... +++++|+.+|+++++++|++.
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQML-----------KEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcCCCCh
Confidence 56778888888888888888888888877753 477777777777777777774
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.85 E-value=8.1e-09 Score=97.48 Aligned_cols=80 Identities=26% Similarity=0.255 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+|-||..|++||+++|+..+||.||+||+...| +..+|.+||.+||.++|+|.
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 688999999999999999999999999999754 88999999999999999985
Q ss_pred -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~~~~~q~ 92 (152)
+|+++|++++.-.+.|-+|..-.-.||
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence 588888887777777777765544343
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.79 E-value=2.8e-08 Score=89.93 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+++|+..|+++|+++|++.++|+++|.+|...| ++++|+.+|++|++++|+|.
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG-----------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 678888999999999999999999999888654 99999999999999999984
Q ss_pred -----HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~~~~~q~ 92 (152)
.|+++++..+..++++..+..-+..+|
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 366677777778888877777665544
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.76 E-value=1.4e-08 Score=59.07 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=30.3
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+++|.+|..++ ++++|++||++||+++|+|
T Consensus 1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence 478999999999865 9999999999999999986
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=5.3e-08 Score=84.13 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
+++|+..|++||+++|+++.+|++||++|..+| +|++|+.+|++|++++|+|...+..+..+
T Consensus 52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLE-----------EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 789999999999999999999999999999764 99999999999999999998776666444
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=98.71 E-value=7.2e-08 Score=87.04 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++||++||++.++|++||.+|...| ++++|+.+|++|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G-----------~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAG-----------QLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCh
Confidence 567777777777777777777777777777654 78888888888888888764
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=8.9e-08 Score=59.75 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++++|++..+++.+|.+|... +++++|+++|++++++.|.+.
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKL-----------GKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCcch
Confidence 368999999999999999999999999999864 599999999999999999886
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=5.8e-08 Score=69.97 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCch
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kape 79 (152)
+++|+..|+++++++|++.+.++++|.+|...| ++++|+.+|+++++++|++..+...++-+.+-+|
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALG-----------EPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 567777788888888888888888888777643 7788888888888888877776665554444443
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.68 E-value=1.2e-07 Score=75.47 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|++.|+-...+||.+++-|++||.++.. +++|++|+++|.+|+.++|+|+
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-----------~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-----------QKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHhcCCCCc
Confidence 37899999999999999999999999999986 4599999999999999999996
No 22
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=5.8e-08 Score=88.03 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA---~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr 68 (152)
.|++|+..|++||++||++.++ |||||.+|..+| ++++|++||++|+++. |..|.
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~dEAla~LrrALels--n~~f~ 147 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EGKKAADCLRTALRDY--NLKFS 147 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhc--chhHH
Confidence 4899999999999999999976 999999999865 9999999999999983 55554
No 23
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.64 E-value=5.9e-08 Score=55.70 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=30.4
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|++||.+|..+| +|++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence 478999999999865 9999999999999999987
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=98.62 E-value=1.6e-07 Score=84.78 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..+++||++||++.++|..||.++...| ++++|+.+|++|++++|+|.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS-----------EYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCH
Confidence 579999999999999999999999999998754 99999999999999999986
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=1.3e-07 Score=79.05 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|++||+++|++..+++++|.+|...| ++++|+++|+++++++|++.
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-----------~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG-----------RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 4789999999999999999999999999998764 99999999999999999986
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=4e-08 Score=91.87 Aligned_cols=54 Identities=30% Similarity=0.405 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+|.|..+|..||.+||.|-.|||-||.+|+++ |.+|.|.-+||||+++||.|.
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-----------ek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-----------EKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-----------chhhHHHHHHHhhhcCCccch
Confidence 378999999999999999999999999999986 599999999999999999995
No 27
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=1.4e-07 Score=75.43 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHH-HhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAH-TSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy-~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++|++++|++.+++.++|.++ ...|- ..+++|.++|++|++++|+|.
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~---------~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQ---------HMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHhCCCCh
Confidence 57778888888888888888888887765 33330 125777777777777777773
No 28
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=1.5e-07 Score=76.78 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+|.|...++.+...||.+++++++=|.|+..+.-+. .-.+++..+++|+.=|++||.|||+.-
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk-~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK-QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 688999999999999999999999999998876543 234677899999999999999999872
Q ss_pred ---------HHHHHHHHHhcCchh----------------hHHHHHhhhccCCCCCCCCCCCCCCCccccccccCC
Q 031846 66 ---------LYQKSLEVAAKAPEL----------------HMEIHKHGLGQQTMGPSTGPSSTSSGAKTSKKKKSS 116 (152)
Q Consensus 66 ---------~YrkaLe~~~kapel----------------~~e~~~~~~~q~~~~~~~~~~~~~~~~~~~~~k~~s 116 (152)
.|.++.+.+.+|-++ -+|||..+..|+.+ ..+++..+|+....|..|..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~--~q~~~~~~~~~~~~~~~k~k 159 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLG--QQAMGGASSSSSSAKSSKKK 159 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS-----------------------
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhh--hhhccCCCCCCCCccccccc
Confidence 467776666544433 25788888888863 33444554444433433443
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.59 E-value=2.5e-07 Score=83.79 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+++|+..|+++|+++|+..++|+++|.++..+| ++++|+.+|++|++++|+|.
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-----------~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLELG-----------DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 689999999999999999999999999998754 99999999999999999985
Q ss_pred -----HHHHHHHHHhcCchhhHHHHHhh
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHKHG 88 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~~~ 88 (152)
.|++++++.+...+.|..+....
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 35555666555555555554433
No 30
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=1.3e-07 Score=82.04 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------- 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------- 65 (152)
.|++||.+|.+||+++|+++--|.|..-||.++| +|+.|++-.+.||.+||...
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 3899999999999999999999999999999975 99999999999999999885
Q ss_pred ------HHHHHHHHHhcCchh--hHHHHHhhhccCC
Q 031846 66 ------LYQKSLEVAAKAPEL--HMEIHKHGLGQQT 93 (152)
Q Consensus 66 ------~YrkaLe~~~kapel--~~e~~~~~~~q~~ 93 (152)
.|+|+|++.+--... |+++.++-+.|+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 366666665544432 4455556565553
No 31
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.54 E-value=7.1e-08 Score=57.92 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHH
Q 031846 8 KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKAT 51 (152)
Q Consensus 8 ~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~ 51 (152)
.|++||++||+++++|++||++|...| ++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhc
Confidence 489999999999999999999999865 888775
No 32
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.49 E-value=8.2e-07 Score=68.18 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC---CCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL---TPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l---~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka 77 (152)
+++|+..|+++++++|++..+++++|.+|..+|.. ..+.++|...+++|+++|++++.++|+| |..++.....+
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~ 164 (172)
T PRK02603 88 HDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN--YIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh--HHHHHHHHHhc
Confidence 68999999999999999999999999999876532 3456677888999999999999999998 66666554433
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.48 E-value=5.1e-07 Score=87.89 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------------
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------- 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------- 65 (152)
.+++|+..|+++|+++|++.+++++||.+|..+| ++++|+.+|++|++++|++.
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG-----------DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 3789999999999999999999999999999765 89999999999999999763
Q ss_pred --------------------HHHHHHHHHhcCchhhHHHHHhhhccC
Q 031846 66 --------------------LYQKSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 66 --------------------~YrkaLe~~~kapel~~e~~~~~~~q~ 92 (152)
.|++++++.+..++.+..+......+|
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK 399 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 245556666666666766666554444
No 34
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.42 E-value=8.7e-07 Score=70.54 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
.+++||..|.+|+.++|+++.+++|+|.+|...| +.++|.++|+.|+..-=+++.|....+
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG-----------~~~~A~~aF~~Ai~~~~~~~~~~~l~~ 144 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD-----------NVCYAIKALKAVVRICGEVSEHQILRQ 144 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 3789999999999999999999999999999865 999999999999999855555444433
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=1.5e-06 Score=60.15 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|++.|+++++.+|++ .++++.+|.++... +++++|+.+|++++..+|++
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-----------GKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHCCCC
Confidence 688999999999999887 68999999999975 49999999999999999986
No 36
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.42 E-value=1.3e-06 Score=66.46 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhccc---CCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAF---LTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~---l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++|++++|.+.+++.+||.+|..+|. ..-|..+|..++++|+.+|++++..+|++.
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 6899999999999999999999999999983331 122567788889999999999999999775
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.42 E-value=1.1e-06 Score=85.74 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++++++|++.+++++||+++...| ++++|+++|++|++++|+|.
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-----------~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG-----------DIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 445555555555555555555555555555433 55666666666666666554
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.40 E-value=6.1e-07 Score=58.54 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=33.7
Q ss_pred CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 18 NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 18 ~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++++|+++|+.+... ++|++|+.+|++|+++||+|.
T Consensus 1 e~a~~~~~~g~~~~~~-----------~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQ-----------GDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp TSHHHHHHHHHHHHHT-----------THHHHHHHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCH
Confidence 4678999999999975 499999999999999999996
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.38 E-value=2e-06 Score=63.70 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++++|++..+++.+|.+|...| ++++|+++|+++++++|++.
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-----------ELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCH
Confidence 3689999999999999999999999999998754 99999999999999999885
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.38 E-value=1.1e-06 Score=85.74 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++||+++|++++++++||.+|..+| ++++|+.+|++|++++|++.
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG-----------d~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLD-----------DMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCc
Confidence 689999999999999999999999999999865 99999999999999999984
No 41
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.35 E-value=2.1e-06 Score=65.34 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+++|+..|++||.+.|+.. .+|++||.+|...| ++++|+.+|++|+.++|++..
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-----------~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-----------EHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcHH
Confidence 37899999999999988743 58999999999865 999999999999999998853
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=2.1e-06 Score=59.37 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
.+++|+..|++++..+|++ +++++++|.++..+ +++++|+.+|+++++..|++...+.+++
T Consensus 54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL-----------GDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 0478999999999999986 78999999999875 4999999999999999999988777653
No 43
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.32 E-value=5.7e-07 Score=61.53 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++.+|. +...+++||.+|...| +|++|++++++ ++.+|.|.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-----------~y~~A~~~~~~-~~~~~~~~ 58 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-----------KYEEAIELLQK-LKLDPSNP 58 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHC-HTHHHCHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-----------CHHHHHHHHHH-hCCCCCCH
Confidence 478999999999999995 4667888999999865 99999999999 99999884
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.7e-06 Score=80.49 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 76 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k 76 (152)
++++||..|++||.+.|++.++|--+|.+|.-+| ++++|+++|.|||.++|+|......|.++-.
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg-----------nld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG-----------NLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-----------ChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 5799999999999999999999999999998754 9999999999999999999877766654433
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.30 E-value=3e-06 Score=82.65 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++++++|++..++++||.+|..+| ++++|+++|++|++++|+|.
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARK-----------DYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 567777777777777777777777777777644 77777777777777777764
No 46
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.30 E-value=9.1e-07 Score=51.01 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=29.8
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|++||.+|..+| ++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~~-----------~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLG-----------DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTT-----------SHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCC
Confidence 368999999999865 9999999999999999976
No 47
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=3.4e-06 Score=52.46 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
+++|+..|++++.++|.+.++++++|.++... +++++|..+|+++++++|+
T Consensus 50 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 50 YEEALEDYEKALELDPDNAKAYYNLGLAYYKL-----------GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-----------HhHHHHHHHHHHHHccCCC
Confidence 68999999999999999999999999999864 5899999999999999984
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.27 E-value=3.9e-06 Score=77.78 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHH----HHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFN----KATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~e----kA~~~FqkAleldP~N 64 (152)
+++|+..|+++++++|++..++++||.+|..+| +++ +|+.+|++|++++|++
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G-----------~~~eA~~~A~~~~~~Al~l~P~~ 283 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG-----------RSREAKLQAAEHWRHALQFNSDN 283 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----------CchhhHHHHHHHHHHHHhhCCCC
Confidence 466777777777777777777777777776655 333 3566666666666665
No 49
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=1.1e-06 Score=58.75 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhc----CCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 1 MILDAISKLEEALMV----SPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 1 mieeAIs~leeAL~i----dP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
.+++|++.|++||++ .++ -..+++|||.+|..+| ++++|+++|++|+++
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-----------DYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Confidence 478999999999965 222 3567999999999865 999999999999986
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=4.7e-06 Score=65.59 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+++|+..|+++++++|++. ++++++|.+|...+ ++++|+..|+++++++|++..
T Consensus 48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-----------DYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHCcCCCc
Confidence 47899999999999999876 68999999999754 999999999999999998763
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.24 E-value=4.5e-06 Score=64.05 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
.+++|+..|+++++++|+.. .++++||.+|...| ++++|+.+|++|++++|++...
T Consensus 50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcccHHH
Confidence 37899999999999988754 68999999999865 9999999999999999998643
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.22 E-value=1.1e-05 Score=59.65 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
+++|+..|+++++++|++..+++++|.+|...| ++++|+.+|+++++..
T Consensus 81 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG-----------KYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhcc
Confidence 678999999999999999999999999998754 7788888888887754
No 53
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.21 E-value=3.8e-06 Score=52.00 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL 71 (152)
+++++.||.+|..+| ++++|+++|+++|+.+|+|...+..|
T Consensus 1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 468999999999875 99999999999999999998777665
No 54
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.6e-06 Score=73.36 Aligned_cols=56 Identities=29% Similarity=0.350 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr 68 (152)
+.+||..++++|+++|+|..|+|.-|.||..+ ++|+.|...|+||++++|+|-..+
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-----------~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLAL-----------GEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHhCCCcHHHH
Confidence 67899999999999999999999999999864 599999999999999999996433
No 55
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.20 E-value=3.5e-06 Score=77.02 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
.+++|+..|++||++|| +..+|..||.++...| ++++|+++|++|+.++|.++.|
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G-----------~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG-----------DNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCchH
Confidence 37899999999999999 5899999999999765 9999999999999999998754
No 56
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=3.2e-06 Score=76.88 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=38.0
Q ss_pred hcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 14 MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 14 ~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+-+|++.++|+|||++|..+| +|++|+.+|++||+++|++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lG-----------ryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKG-----------RVKDALAQFETALELNPNPD 109 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCch
Confidence 368999999999999999865 99999999999999999986
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.17 E-value=9.4e-06 Score=75.26 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++++|++.+++..||+++...| ++++|+++|++|++++|++.
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g-----------~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK-----------QYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcH
Confidence 3689999999999999999999999999998765 99999999999999999985
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.12 E-value=1.6e-05 Score=74.61 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
++++|+..|++++.++|++.+++++||.++..+| ++++|+++|++|++++|+|.
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g-----------~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARG-----------WPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCh
Confidence 4689999999999999999999999999998765 89999999999999999994
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=1.2e-05 Score=76.10 Aligned_cols=78 Identities=3% Similarity=-0.064 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
++||...|+.+++++|++..|+.+++.++.++ +++|+|+.+++++|+.+|+|.
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-----------~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-----------QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence 68999999999999999999999999999875 499999999999999999985
Q ss_pred -----HHHHHHHHHhcCchhhHHHHHhhhc
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHKHGLG 90 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~~~~~ 90 (152)
.|+++++..+..++....+...+..
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3555555445555555666655543
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.08 E-value=1.3e-05 Score=63.00 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~d---A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
.+++|+..|+++++++|++.. ++|.+|.++.... .+.....+++++|++.|+++++.+|++..+.+++.
T Consensus 85 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 85 DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 368999999999999998887 7999999998631 11122246899999999999999999987665553
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=8.4e-06 Score=76.60 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+|.|.-.|++|++|||.+.....|+|..|..+ ++.|+|+..|++|+.+||.|.+
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-----------k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-----------KRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-----------hhhhHHHHHHHHHHhcCCCCch
Confidence 68999999999999999999999999999975 4999999999999999999974
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=1.1e-05 Score=74.71 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---------HHH-----
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------LYQ----- 68 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------~Yr----- 68 (152)
++-...|.+|..+||++++.||+.|..+.- .++|++|+.-||||+.|+|+|- +||
T Consensus 377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-----------L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFL-----------LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHHHHHHHhcCCCCCchhHhHHHHHHH-----------HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999875 4699999999999999999994 233
Q ss_pred -------HHHHHHhcCchhhHHHHHhhhccC
Q 031846 69 -------KSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 69 -------kaLe~~~kapel~~e~~~~~~~q~ 92 (152)
.+.+-++..||.+.-+..-+..||
T Consensus 446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 334455666666666666665555
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.05 E-value=2.9e-05 Score=68.42 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++++.+|++..+++++|.+|...| ++++|+.+|+++++.+|++.
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK-----------DYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHHHHhCCCCH
Confidence 567888888888888888888888888887654 88889999999999988875
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=1.6e-05 Score=75.16 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+|||...++++|..+|++.++++.+|.++..+| ++++|+++|++++..+|+++
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g-----------~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG-----------QSEQADACFERLSRQHPEFE 188 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcCCCcH
Confidence 3799999999999999999999999999999765 99999999999999999976
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.03 E-value=2.6e-05 Score=68.67 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++++++|++..++.+||.++...| + ++|+++|++++++.|+|+
T Consensus 786 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK-----------D-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------c-HHHHHHHHHHHhhCCCCc
Confidence 678999999999999999999999999888754 5 668888888888888875
No 66
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-05 Score=73.64 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
|.+||..|.+||+.||+++.+|.|.+.+|++++ +|..|+.+-++++++||++.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~-----------~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG-----------EYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCchHH
Confidence 678999999999999999999999999999875 67777777777777777664
No 67
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=1.6e-05 Score=66.91 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|+..|++.|+..|+. ++|+|-||.+|...| ++++|+.+|+++++..|+++.
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-----------~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-----------KKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCcc
Confidence 789999999999999998 589999999999754 999999999999999999863
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.98 E-value=3.8e-05 Score=72.17 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..|+++|+++|++.+++..|+.++...| ++++|+.+++++++.+|+|
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g-----------~~~eA~~~l~~~l~~~P~~ 116 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAG-----------QYDEALVKAKQLVSGAPDK 116 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555554432 4444444444444444443
No 69
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.4e-05 Score=72.11 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
..||+.|.+|++|||.+..|||-||.+|..++ ...=|+-|||||+++-|++.
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~-----------Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMK-----------MHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc-----------chHHHHHHHHHHHhcCCCch
Confidence 46888888888888888888888888887643 66778888888888888775
No 70
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.94 E-value=4.9e-05 Score=63.31 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.+++|+..|+++++++|+..++++.||.+|...| ++++|+++|+++++++|++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhh
Confidence 3688999999999999999999999999998764 8999999999999998876
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=1.9e-05 Score=73.57 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
|+.||.+|+.||..+|++...|..||-+++.- .+.++|+..|+|||+|.|..-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-----------~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANG-----------NRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC-----------cccHHHHHHHHHHHhcCCCeee
Confidence 67888888888888888888888888888742 4888888888888888888753
No 72
>PLN02789 farnesyltranstransferase
Probab=97.89 E-value=3.5e-05 Score=66.46 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
++|+..++++|+.||++..+|++.|.++..++. ..++++++++++||++||+|
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~---------~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP---------DAANKELEFTRKILSLDAKN 141 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc---------hhhHHHHHHHHHHHHhCccc
Confidence 455555555555555555555555555544330 11244555555555555555
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.89 E-value=2e-05 Score=75.37 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
++.+.+..||++||.+|+|||+||.++.++| ++++|.+||+-|+++++.++.
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-----------d~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-----------DSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHhhccCCCc
Confidence 4456899999999999999999999999876 999999999999999999874
No 74
>PLN02789 farnesyltranstransferase
Probab=97.89 E-value=3.1e-05 Score=66.83 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
++++++.++++|++||++..||++.|.++..++ ++++|+++|+++|++||.|.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-----------~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-----------GWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHCCCch
Confidence 367899999999999999999999999998754 89999999999999999885
No 75
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.88 E-value=2.6e-05 Score=40.75 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=29.6
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
++++++|.+|... +++++|..+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKL-----------GDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHH-----------hhHHHHHHHHHHHHccCCCC
Confidence 6799999999864 59999999999999999974
No 76
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=5e-05 Score=62.82 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHH---HHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTL---WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSL 71 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~---~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaL 71 (152)
.+++|+..|++++...|....+. +.||.+|...+ +|++|+.+|++.+++.|+|+ .|+.++
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-----------~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 37899999999999999987775 99999999864 99999999999999999996 466664
No 77
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.88 E-value=1.7e-05 Score=47.43 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=23.9
Q ss_pred HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 22 TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 22 A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
||.+||++|..+| +|++|++||++||.+.
T Consensus 1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhc
Confidence 6899999999875 9999999999965443
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.87 E-value=5e-05 Score=68.51 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
+-|||..+.++|.++|++.++|.....||.- .++||.|+.-|++|+++||+|...|..++-+
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~-----------dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG-----------DEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 5699999999999999999999999999983 6899999999999999999997655555433
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.85 E-value=5.1e-05 Score=64.78 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
.+.+|++.|.+|.+++|++.++|.-||.+|...| ++++|-..|.||+++.|+++.+..+|-|
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-----------r~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-----------RFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-----------ChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 3689999999999999999999999999999865 9999999999999999999876666543
No 80
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.8e-05 Score=70.10 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
.|.||..|++||++||+...||--+|--|..+. +-..|+++|.+||++||.+-
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK-----------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK-----------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc-----------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence 488999999999999999999999999998753 89999999999999999873
Q ss_pred -----HHHHHHHHHhcCchhhHHHHH
Q 031846 66 -----LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 -----~YrkaLe~~~kapel~~e~~~ 86 (152)
-|||++++-+-.+-+-.-+++
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 278888888888876666555
No 81
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.84 E-value=0.00019 Score=58.47 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcC--CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVS--PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~id--P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
+++++..++++.... |.+...|+.+|.++...| ++++|+.+|++||+++|+|+..+..+-..
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-----------~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-----------DPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 567788888877655 677788888999999865 99999999999999999999877766433
No 82
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.80 E-value=7.7e-05 Score=49.46 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=38.2
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhc
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 76 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~k 76 (152)
|.+|.|+.+++++| +|++|..|.+++|+++|+|..++...++.++
T Consensus 2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 57899999999875 9999999999999999999998888777654
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.80 E-value=6.6e-05 Score=63.83 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+..|..-||+||++||++.++|--+..+|.++| +.+.|-+.|++|+.++|+|-
T Consensus 51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcCCCcc
Confidence 456888899999999999999999999988765 88999999999999999885
No 84
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.00011 Score=67.30 Aligned_cols=64 Identities=22% Similarity=0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHH---------------------------------HHHhHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDE---------------------------------AKEYFN 48 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~e---------------------------------A~~~~e 48 (152)
++.|++.|++|+++||+++.||--|+.+|.....+.|+... ..++++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 46899999999999999999999998888554334442111 013899
Q ss_pred HHHHHHHHHHHcCCCcH
Q 031846 49 KATLYFQQAVDEEPSNE 65 (152)
Q Consensus 49 kA~~~FqkAleldP~Ne 65 (152)
+|..+|+||++++|+..
T Consensus 438 ~A~~~l~rAl~L~ps~~ 454 (517)
T PRK10153 438 EAYQAINKAIDLEMSWL 454 (517)
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 99999999999999654
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.78 E-value=7.7e-05 Score=60.74 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g 34 (152)
.++|+..|++||+++|++.+++..|+.++...|
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 579999999999999999999999999988654
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.75 E-value=0.00013 Score=61.44 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
.+++|+..|+++++..|+ .++|++.||++|..+| ++++|+..|++.++..|+++..+++.+..
T Consensus 195 ~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g-----------~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 195 KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG-----------DTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 478999999999977666 6999999999998754 99999999999999999999888886543
No 87
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.73 E-value=0.00015 Score=62.97 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka 77 (152)
.++|+..+++.++.+|++++.+.++|.++... ++|++|.++|+++++++|+++.|...-.+.++.
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-----------~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-----------GEWQEASLAFRAALKQRPDAYDYAWLADALDRL 374 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999975 499999999999999999998766554444443
No 88
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.73 E-value=7e-05 Score=42.24 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+|+|++|.+|...| ++++|++.|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g-----------~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLG-----------DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCcCC
Confidence 68999999999754 9999999999999999975
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.69 E-value=0.00019 Score=61.05 Aligned_cols=33 Identities=24% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g 34 (152)
.+-|-+.|++||.++|++.+.+.|-|--++++|
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 567889999999999999999999999999887
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.68 E-value=9.1e-05 Score=73.04 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.||+||+..+++|+.||++-.|+.-||.|+.+++ .+.|+|.++|..|.+++|+|-
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~----------q~le~A~ehYv~AaKldpdnl 71 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG----------QDLEKAAEHYVLAAKLDPDNL 71 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc----------CCHHHHHHHHHHHHhcChhhh
Confidence 4899999999999999999999999999999876 459999999999999999995
No 91
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0002 Score=62.04 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka 70 (152)
.++-|..++.-|..||++.+-|+-||-+|..+ ++++.|...|.+|+++.|+|..+.-+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-----------~~~~~A~~AY~~A~rL~g~n~~~~~g 195 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-----------GRASDALLAYRNALRLAGDNPEILLG 195 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----------cchhHHHHHHHHHHHhCCCCHHHHHH
Confidence 46789999999999999999999999999975 49999999999999999999854433
No 92
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.63 E-value=0.00022 Score=61.97 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCCCh--HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH--HHHHcCCCcHHHHHHHHHHh
Q 031846 2 ILDAISKLEEALMVSPNRH--DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--QAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~--dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq--kAleldP~Ne~YrkaLe~~~ 75 (152)
.+.++..++++++.+|+++ ..+.+||.++... ++|++|.++|+ ++++++|+++.|...-++..
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-----------~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-----------GEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-----------ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 3578899999999999999 8888999999875 49999999999 69999999998776655554
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00019 Score=65.92 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846 43 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 43 A~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka 77 (152)
|.+.+.+|+++|++||.+||+|+...+.|...+|.
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 55799999999999999999999999999887765
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.61 E-value=0.00043 Score=57.70 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846 46 YFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~YrkaL 71 (152)
++++|+..|+++++.+|++..+...+
T Consensus 297 ~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 297 GPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 55566666666666666555544333
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0002 Score=66.44 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
|++|.+.-.+.++++|+-+++|..+|+|+.-+ ++|++|+..|.+.|+.||+|......|.-+
T Consensus 52 ~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-----------g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 52 YEKALKDATKTRRLNPDWAKGYSRKGAALFGL-----------GDYEEAILAYSEGLEKDPSNKQLKTGLAQA 113 (539)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-----------ccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence 34444444444445555555555555554432 499999999999999999998766665443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.59 E-value=0.00018 Score=59.38 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..|+++++++|++..++..||.+|...| ++++|+.+|+++++..|.+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCCC
Confidence 689999999999999999999999999999765 9999999999999998854
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00015 Score=67.75 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
+-+|+-.||.|++.||+|.+||--||.+++. +++=..|+..+++||++||+|-....+|.+
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaE-----------NE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAE-----------NENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhh-----------ccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4589999999999999999999999999996 356678999999999999999755555433
No 98
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.59 E-value=0.00014 Score=46.94 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846 24 WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 24 ~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr 68 (152)
|.+|.++...| +|++|+.+|+++++.+|+|..+.
T Consensus 1 ~~~a~~~~~~g-----------~~~~A~~~~~~~l~~~P~~~~a~ 34 (65)
T PF13432_consen 1 YALARALYQQG-----------DYDEAIAAFEQALKQDPDNPEAW 34 (65)
T ss_dssp HHHHHHHHHCT-----------HHHHHHHHHHHHHCCSTTHHHHH
T ss_pred ChHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCHHHH
Confidence 56889998765 99999999999999999997433
No 99
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00015 Score=67.33 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------H
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------L 66 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------~ 66 (152)
.|++|+..|+++++|||++.-+|..|+.++++++ .++++...|+.|.+--|+-+ .
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~-----------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQH-----------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 3799999999999999999999999999999864 66777777777777777543 3
Q ss_pred HHHHHHHHhcCchhhHHHHHh
Q 031846 67 YQKSLEVAAKAPELHMEIHKH 87 (152)
Q Consensus 67 YrkaLe~~~kapel~~e~~~~ 87 (152)
+-+++++++++.+|-+..|.-
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HHHHHHHHHHHHhhccccccc
Confidence 555666666666666554443
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.52 E-value=0.00032 Score=68.14 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHH---------------------------HHHhHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDE---------------------------AKEYFNKATLYF 54 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~e---------------------------A~~~~ekA~~~F 54 (152)
+++|+..|.++|++||.+..||+-||.+|..+| |... ..+++++|.-||
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG----d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG----DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc----cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 789999999999999999999999999999886 3333 335899999999
Q ss_pred HHHHHcCCCc
Q 031846 55 QQAVDEEPSN 64 (152)
Q Consensus 55 qkAleldP~N 64 (152)
-|||..+|.|
T Consensus 231 ~rAI~~~p~n 240 (895)
T KOG2076|consen 231 SRAIQANPSN 240 (895)
T ss_pred HHHHhcCCcc
Confidence 9999999999
No 101
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.47 E-value=0.00011 Score=50.03 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkA 57 (152)
+++|+..|++ ++++|.+.+.+|-+|.++..+| +|++|+++|++|
T Consensus 41 y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-----------~y~eAi~~l~~~ 84 (84)
T PF12895_consen 41 YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-----------KYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHhcC
Confidence 6899999999 9999999999999999999865 999999999986
No 102
>PRK11906 transcriptional regulator; Provisional
Probab=97.46 E-value=0.00041 Score=63.40 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
..+|...-++|+++||.++.|++.+|.++... ++++.|...|++|+.++|+...
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~-----------~~~~~a~~~f~rA~~L~Pn~A~ 373 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLS-----------GQAKVSHILFEQAKIHSTDIAS 373 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-----------cchhhHHHHHHHHhhcCCccHH
Confidence 35788899999999999999999999988754 3799999999999999998863
No 103
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.44 E-value=0.00057 Score=66.00 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.+++|++.|+++|+++|++.+++..|..+|...+ ++++|++.+++++.++|++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~-----------q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAG-----------RGGVVLKQATELAERDPTV 169 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC-----------CHHHHHHHHHHhcccCcch
Confidence 3689999999999999999999998877777643 5555555555555555554
No 104
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.0011 Score=53.35 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
++||...|+-...+||.+++-+..||-++.. +++|++|+++|-.|..++++|+
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-----------~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-----------KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 7899999999999999999977777777764 5699999999999999999885
Q ss_pred -HHHHHHHHHhcCchhhHHHHH
Q 031846 66 -LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 -~YrkaLe~~~kapel~~e~~~ 86 (152)
..+++++++-..|+ |.+|.+
T Consensus 122 ~~A~~~f~~a~~~~~-~~~l~~ 142 (165)
T PRK15331 122 AKARQCFELVNERTE-DESLRA 142 (165)
T ss_pred HHHHHHHHHHHhCcc-hHHHHH
Confidence 46667777766666 444444
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00057 Score=59.12 Aligned_cols=53 Identities=28% Similarity=0.322 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
+||..+.+-|++=+++++||+.|...|.+. ++|++|.-||++.|-++|-|++|
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-----------~~f~kA~fClEE~ll~~P~n~l~ 190 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSE-----------GDFEKAAFCLEELLLIQPFNPLY 190 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHcCCCcHHH
Confidence 678888888888889999999999999974 59999999999999999999753
No 106
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.39 E-value=0.0029 Score=50.32 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHh-cCCC-ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcC
Q 031846 2 ILDAISKLEEALM-VSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~-idP~-~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ka 77 (152)
+++-|..|++.++ -.|+ .-+.+|.|...+++++ +|++|+.|....|+.+|+|...+..-++.+++
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-----------eY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-----------EYSKSLRYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-----------hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 5688999999996 4554 4567899999999864 99999999999999999999988887777654
No 107
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.00075 Score=57.36 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH-HHHhcCchh
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL-EVAAKAPEL 80 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL-e~~~kapel 80 (152)
.+.||..+-+||+|+|.+-.|+-...-+|.+ .+.|++|++-|++.++++|.+...|++. ++-++.-|-
T Consensus 150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek-----------~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYEKALERRAEAYEK-----------MEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 4689999999999999999999988999876 4799999999999999999988888776 333444443
Q ss_pred h
Q 031846 81 H 81 (152)
Q Consensus 81 ~ 81 (152)
+
T Consensus 219 n 219 (271)
T KOG4234|consen 219 N 219 (271)
T ss_pred H
Confidence 3
No 108
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.35 E-value=0.00023 Score=47.35 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=26.7
Q ss_pred CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 18 NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 18 ~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
+-..+|++||.+|..+| +|++|+++|++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELG-----------RYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 34578999999999865 999999999999976
No 109
>PRK11906 transcriptional regulator; Provisional
Probab=97.32 E-value=0.00048 Score=62.98 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
++.|+..|++|+.+||+.+++||.+|.++... ++.++|.+++++|++++|--.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-----------G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHN-----------EKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCchhh
Confidence 57899999999999999999999999998865 499999999999999999763
No 110
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.25 E-value=0.0031 Score=45.32 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc--HHHHHHH
Q 031846 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQKSL 71 (152)
Q Consensus 5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N--e~YrkaL 71 (152)
.++.++++++.||++.++.|.|+.++... +++++|++-+-..|..+|+. +..|+.|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~-----------g~~e~Al~~Ll~~v~~dr~~~~~~ar~~l 64 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAA-----------GDYEEALDQLLELVRRDRDYEDDAARKRL 64 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHCC-TTCCCCHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCccccccHHHHHH
Confidence 57889999999999999999999999865 59999999999999999976 4555543
No 111
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.20 E-value=0.0026 Score=47.04 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKS 70 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~Yrka 70 (152)
+++|+..+++++.+||-+..+|..|-.+|...| +..+|...|++....|.+-+.+.|+.+ +|++.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g----~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQG----RRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc----CHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 689999999999999999999999999999877 567888888888888888899999875 45544
No 112
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00036 Score=63.71 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|++.--..|++|+++.+|++--|.+++.. .+.++|+..|++||.++|+|.
T Consensus 185 ~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~-----------~~~~ka~~hf~qal~ldpdh~ 237 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDATNAEALYVRGLCLYYN-----------DNADKAINHFQQALRLDPDHQ 237 (486)
T ss_pred chhHHHHHHHHHhcccchhHHHHhcccccccc-----------cchHHHHHHHhhhhccChhhh
Confidence 46788888888999999999999999999864 489999999999999999985
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.15 E-value=0.0031 Score=52.02 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-----------------CCChH----------HHHHhHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-----------------TPDQD----------EAKEYFNKATLYF 54 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-----------------~pd~~----------eA~~~~ekA~~~F 54 (152)
+++|+..++++|+.+|++..++.. +.++...|.. .|+.. ...+++++|...|
T Consensus 59 ~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 137 (355)
T cd05804 59 LPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAA 137 (355)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678899999999999998877664 3333322211 11111 1234799999999
Q ss_pred HHHHHcCCCcH
Q 031846 55 QQAVDEEPSNE 65 (152)
Q Consensus 55 qkAleldP~Ne 65 (152)
+++++++|++.
T Consensus 138 ~~al~~~p~~~ 148 (355)
T cd05804 138 RRALELNPDDA 148 (355)
T ss_pred HHHHhhCCCCc
Confidence 99999999985
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.0033 Score=47.54 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.++||..|++||+..... .+++..||.+|..+| ++++|+..|+++++..|+++
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALALLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCcc
Confidence 479999999999975444 679999999999876 99999999999999999843
No 115
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.05 E-value=0.00074 Score=41.60 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGN 28 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGn 28 (152)
.+++|+..|+++|+.+|++.+++..||.
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4789999999999999999999999985
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.05 E-value=0.0012 Score=64.70 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ 75 (152)
+.++|+..|+++|++||+++.++.|+|-.|.. .++++|.+++.|||...=++..|...+++=+
T Consensus 131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae------------~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEE------------EDKEKAITYLKKAIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 35789999999999999999999999988874 2899999999999998888877777775433
No 117
>PRK15331 chaperone protein SicA; Provisional
Probab=96.99 E-value=0.0021 Score=51.77 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++||..|-.|..++++++..+|..|..|..+| +.++|..||+-|++ +|++.
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~-----------~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR-----------KAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC-----------CHHHHHHHHHHHHh-CcchH
Confidence 3789999999999999999999999999999765 99999999999999 67664
No 118
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.96 E-value=0.0016 Score=37.95 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.2
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
..++.|||++|..+| ++++|..+|++|+++
T Consensus 2 a~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQG-----------RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence 367899999999865 888888888888865
No 119
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0028 Score=55.00 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+.+|...|.+|++|.|++.+.+--+|.+++.++ -...-.+|.+.|++||.+||.|-
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a--------~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQA--------GQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------CCcccHHHHHHHHHHHhcCCccH
Confidence 456777777777777777777777777776542 02255566677777777777763
No 120
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0017 Score=59.44 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~d----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+.+|-++|.+||.|||++-+ .|+|++.++.++| +.++|+.-.+.|+.|||..
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg-----------rl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG-----------RLREAISDCNEALKIDSSY 320 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC-----------CchhhhhhhhhhhhcCHHH
Confidence 56788889999999988544 4888888888876 7778888888888888765
No 121
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0032 Score=59.20 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH----hcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEAL----MVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL----~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+.+|+..|+.+| .+++++ +..+.|||-+|.+++ .|++|+.|||+||.+.|.|..
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-----------~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN-----------KYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh-----------hHHHHHHHHHHHHHcCCCchh
Confidence 678999999999 344443 456889999999864 999999999999999999963
No 122
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.82 E-value=0.0081 Score=47.24 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe~ 73 (152)
|++||..|++...--|- ...|...||-+|... ++|++|+..|++=++++|.|+ .|+++|--
T Consensus 26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-----------~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-----------GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 78999999999876554 668899999999975 499999999999999999997 79999866
Q ss_pred HhcCc
Q 031846 74 AAKAP 78 (152)
Q Consensus 74 ~~kap 78 (152)
.....
T Consensus 95 ~~~~~ 99 (142)
T PF13512_consen 95 YEQDE 99 (142)
T ss_pred HHHhh
Confidence 65543
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.82 E-value=0.0039 Score=49.61 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031846 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE 72 (152)
Q Consensus 1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe 72 (152)
.+++||..|++.+...|. -.+|.+.||.++... ++|++|+..|++-++..|+++ .|..++.
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-----------~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-----------GDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 378999999999998776 467899999999975 499999999999999999986 4666654
Q ss_pred HHhc
Q 031846 73 VAAK 76 (152)
Q Consensus 73 ~~~k 76 (152)
....
T Consensus 89 ~~~~ 92 (203)
T PF13525_consen 89 YYKQ 92 (203)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0057 Score=53.02 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
||+.|+=+||+.|-++|-++--+-.|+.+++-+|- .++++-|.+||.+||+++|.|.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg--------~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG--------AENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHhChHhH
Confidence 58899999999999999999999999999876663 4799999999999999999774
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.79 E-value=0.005 Score=59.27 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
|+++..+|+..|++||-..+.||++|-+..++ ++++.|.+||.+++.++|+|-
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-----------ek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQL-----------EKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHH-----------hhhHHHHHHHHHHhhcCCCch
Confidence 78999999999999999999999999999864 699999999999999999995
No 126
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.78 E-value=0.0022 Score=55.12 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
-|.-.|.++|.|+|+-++++..||.-++.- ++|+-|.+.|.-.+++||.++
T Consensus 83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a-----------~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 83 LARNDFSQALAIRPDMPEVFNYLGIYLTQA-----------GNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHhc-----------ccchHHHHHhhhHhccCCcch
Confidence 466789999999999999999999999863 699999999999999999987
No 127
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.77 E-value=0.0032 Score=57.23 Aligned_cols=72 Identities=21% Similarity=0.091 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC---CChH--------------------HHHHhHHHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT---PDQD--------------------EAKEYFNKATLYFQQA 57 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~---pd~~--------------------eA~~~~ekA~~~FqkA 57 (152)
.|+|||.+|-+++.++|-++-.|-|...||.++..+- .|-. +++++.++|.+-++.+
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~v 191 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETV 191 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 3799999999999999999999999999997763221 0111 1335889999999999
Q ss_pred HHcCCCcHHHHHHHH
Q 031846 58 VDEEPSNELYQKSLE 72 (152)
Q Consensus 58 leldP~Ne~YrkaLe 72 (152)
|+++|++-..+|.+.
T Consensus 192 L~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 192 LALEPKNIELKKSLA 206 (536)
T ss_pred HhhCcccHHHHHHHH
Confidence 999999877777763
No 128
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.69 E-value=0.0054 Score=58.44 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH-HHHH--HHHHhcCch
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL-YQKS--LEVAAKAPE 79 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~-Yrka--Le~~~kape 79 (152)
+||-+....+|+.|+..+-.|--||..+.+ ..+|++|+.||+.||.++|+|.. +|.. |+.-.-..+
T Consensus 58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-----------dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRS-----------DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHhh-----------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 688899999999999999999999999875 35999999999999999999974 3332 233333344
Q ss_pred hhHHHHHhhh
Q 031846 80 LHMEIHKHGL 89 (152)
Q Consensus 80 l~~e~~~~~~ 89 (152)
...+--++++
T Consensus 127 ~~~~tr~~LL 136 (700)
T KOG1156|consen 127 GYLETRNQLL 136 (700)
T ss_pred hHHHHHHHHH
Confidence 4444444443
No 129
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.68 E-value=0.004 Score=59.52 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ 75 (152)
|..||-..|.++|.|+-.-+-.+|-+||+|.-+ .+.++|++.|++|++++|+|...++.|....
T Consensus 657 ~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l-----------~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 657 LHLDATKLLLQALAINSSEPLTFLSLGNAYLAL-----------KNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred hhccHHHHHHHHHhhcccCchHHHhcchhHHHH-----------hhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 556888999999999988888899999999854 5999999999999999999998888886554
No 130
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.0029 Score=59.28 Aligned_cols=74 Identities=24% Similarity=0.176 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc--HHHHH-----HHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQK-----SLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N--e~Yrk-----aLe~~ 74 (152)
++.|.+.|.+||.-|..-.+|+||+|..+-.+ ++.|+|++||-|--.+=-+| -+|+. +||-.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~-----------~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEAL-----------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHh-----------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 68999999999999999999999999998765 59999999998854443333 34543 45666
Q ss_pred hcCchhhHHHHH
Q 031846 75 AKAPELHMEIHK 86 (152)
Q Consensus 75 ~kapel~~e~~~ 86 (152)
.+|.|+.++...
T Consensus 575 aqaie~~~q~~s 586 (840)
T KOG2003|consen 575 AQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHhcc
Confidence 778888776543
No 131
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.59 E-value=0.0096 Score=50.75 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCCChH-----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHD-----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~d-----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.|++|.++|.+||++=|.-.. .|-|.|.|+.++ +.++.|++-.-|||+|+|.++
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-----------~k~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-----------RKWESAIEDCSKAIELNPTYE 168 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-----------hhHHHHHHHHHhhHhcCchhH
Confidence 378999999999999998544 466778888875 589999999999999999774
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.58 E-value=0.0051 Score=52.37 Aligned_cols=55 Identities=31% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
++||.+.+++||+.||++.+++.||..+...+| ...+.+.+++++....+|+|+.
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g----------k~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLG----------KPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC----------CChhHHHHHHHHHHHhCCCChH
Confidence 455666666666666666666666655555443 1224444555555555555553
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.58 E-value=0.014 Score=50.84 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCC----CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHh
Q 031846 5 AISKLEEALMVSP----NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVAA 75 (152)
Q Consensus 5 AIs~leeAL~idP----~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe~~~ 75 (152)
++..++++.+..| ++.+++++++.++...| ++++|.+..+++++.+|++. .++....+.+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-----------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-----------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 4558888898888 58999999999998765 99999999999999999998 6666666654
Q ss_pred cCc
Q 031846 76 KAP 78 (152)
Q Consensus 76 kap 78 (152)
..+
T Consensus 313 ~~~ 315 (409)
T TIGR00540 313 EDN 315 (409)
T ss_pred CCh
Confidence 433
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.55 E-value=0.0067 Score=59.57 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH-------------HHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL-------------YQKS 70 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~-------------Yrka 70 (152)
.+++.|-..|..-+.+-.|++.||.+|.++| ++++|...|+++|++||+|.. -.+|
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA 168 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKA 168 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHH
Confidence 4566666666667777799999999999865 999999999999999999973 3455
Q ss_pred HHHHhcCchhhHH
Q 031846 71 LEVAAKAPELHME 83 (152)
Q Consensus 71 Le~~~kapel~~e 83 (152)
++++.||.+.+..
T Consensus 169 ~~m~~KAV~~~i~ 181 (906)
T PRK14720 169 ITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665543
No 135
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.46 E-value=0.0063 Score=48.96 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|++.|.++|.+-|+.+.||.|...+|.-+| +-++|++-..+||++--+-
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKALELAGDQ 110 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHHHHhcCcc
Confidence 689999999999999999999999999998654 7788888888888876543
No 136
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.44 E-value=0.0055 Score=39.41 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHhcCchhhH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNEL--------------YQKSLEVAAKAPELHM 82 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~--------------YrkaLe~~~kapel~~ 82 (152)
.++|++|+++|+++++.+|+|.. |.++.++..+.+..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46999999999999999999973 5555566555555443
No 137
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.015 Score=49.89 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Q 031846 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kap 78 (152)
|.+|+..|..-|+-=|+. ++|+|-||.+++.+| +|+.|...|.+++.--|+++ |||
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-----------~y~~Aa~~f~~~~k~~P~s~----------KAp 215 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-----------DYEDAAYIFARVVKDYPKSP----------KAP 215 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-----------cchHHHHHHHHHHHhCCCCC----------CCh
Confidence 679999999999988874 689999999999765 99999999999999999874 667
Q ss_pred hhhHHHHHhh
Q 031846 79 ELHMEIHKHG 88 (152)
Q Consensus 79 el~~e~~~~~ 88 (152)
|..+.|..-+
T Consensus 216 dallKlg~~~ 225 (262)
T COG1729 216 DALLKLGVSL 225 (262)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 138
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.32 E-value=0.0056 Score=56.61 Aligned_cols=81 Identities=26% Similarity=0.320 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc---------
Q 031846 2 ILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--------- 64 (152)
Q Consensus 2 ieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N--------- 64 (152)
+++|+..|++||.| +|.-..+|.||+.+|.+.|. .+||+..+++|++.+++-+-.++..
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK----f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK----FAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 67899999999865 45556679999999998762 2445555555555555411112211
Q ss_pred -------------HHHHHHHHHHhcCchh-hHHHHH
Q 031846 65 -------------ELYQKSLEVAAKAPEL-HMEIHK 86 (152)
Q Consensus 65 -------------e~YrkaLe~~~kapel-~~e~~~ 86 (152)
..|++++++..++|+- |..+.+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 1588888888766643 324444
No 139
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.004 Score=40.59 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne 65 (152)
.++|++|++++++++.++|++.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccc
Confidence 3599999999999999999985
No 140
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.28 E-value=0.016 Score=56.14 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHcCCCcH
Q 031846 45 EYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne 65 (152)
++|++|++.|+++++++|+|+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCH
Confidence 477777777777777777775
No 141
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.02 Score=51.82 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCC-------C--------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-
Q 031846 2 ILDAISKLEEALMVSP-------N--------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP-------~--------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne- 65 (152)
|+.|+..|++|+..=. + .--+|-||...|.++ .+|.+|+.+..++|+++|+|.
T Consensus 224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl-----------~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL-----------KEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh-----------hhHHHHHHHHHHHHhcCCCchh
Confidence 6789999999875322 1 113588888888875 499999999999999999996
Q ss_pred --------------------HHHHHHHHHhcCchhhHHHHH
Q 031846 66 --------------------LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 --------------------~YrkaLe~~~kapel~~e~~~ 86 (152)
.+++++++.+..-+.+.||-+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 355556666655555655543
No 142
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.16 E-value=0.0081 Score=54.02 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.|.|...|+.||.++|++.+++...|...-.. .+.-+|-.||-|||.++|.|+
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-----------~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMH-----------NEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-----------hhhHhhhhhhheeeeeCCCch
Confidence 47899999999999999999999999987653 588899999999999999997
No 143
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.05 E-value=0.016 Score=52.72 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-------------CCChHHHH----------HhHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-------------TPDQDEAK----------EYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-------------~pd~~eA~----------~~~ekA~~~FqkAl 58 (152)
+-+|.+.|..|++.||++-.|+|..+-+|..+|.. .||-..|. +.+|+|..-|.+.|
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 57899999999999999999999999999877643 34444433 48999999999999
Q ss_pred HcCCCcHHHHHHHHHHhcCch
Q 031846 59 DEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 59 eldP~Ne~YrkaLe~~~kape 79 (152)
..+|+|..-..+.+-....-|
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHH
Confidence 999999877777666555444
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.04 E-value=0.042 Score=50.81 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
..+|++.|++++.++|+..-...++|++|...| ++.+|+...++.+..+|+|+.
T Consensus 356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-----------~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGG-----------KPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-----------ChHHHHHHHHHHhhcCCCCch
Confidence 578999999999999999889999999999865 888999999999999999974
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.01 E-value=0.026 Score=42.13 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk 56 (152)
+++|+..|++++...|+. ..+.++|+.++... ++|++|+..+++
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-----------~~~d~Al~~L~~ 110 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQ-----------GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHh
Confidence 789999999999977665 46888889888865 499999999866
No 146
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.99 E-value=0.03 Score=54.94 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
+|+.|+-+|.+||+.+|.+-+-+|.-...|.+.| +..+|+++|++.+.++|
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-----------~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTG-----------DLKRAMETFLQLLQLDP 272 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHhhCC
Confidence 5889999999999999999999999999999876 89999999999999999
No 147
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.98 E-value=0.029 Score=44.12 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhccc----CCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAF----LTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~d---A~~nLGnAy~~~g~----l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka 70 (152)
.+++|+..+++.|+++|+|.. |+|-.|+++..+.- ..+..+.=.....+|...|++-|+.=|+++-...+
T Consensus 62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 378999999999999999865 58888999987531 00011111235789999999999999998765544
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.97 E-value=0.04 Score=45.63 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcc------cCCCChHH-HHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHA------FLTPDQDE-AKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g------~l~pd~~e-A~~~~ekA~~~FqkAleldP~Ne~Yrka 70 (152)
.+++|+..|++.++++|+++ .|+|.+|+++..++ +...|..+ -...-.+|+..|++-|+.-|+.+-...+
T Consensus 84 ~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A 163 (243)
T PRK10866 84 DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA 163 (243)
T ss_pred CHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 37899999999999999874 56999999875443 11111111 1234568999999999999988755444
Q ss_pred H
Q 031846 71 L 71 (152)
Q Consensus 71 L 71 (152)
.
T Consensus 164 ~ 164 (243)
T PRK10866 164 T 164 (243)
T ss_pred H
Confidence 3
No 149
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.036 Score=50.26 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCC-------------------------hHHHHHhHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPD-------------------------QDEAKEYFNKATLYFQ 55 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd-------------------------~~eA~~~~ekA~~~Fq 55 (152)
|+.+|...|+.+|+.-| +.|.+-.|..+|.+.. .|. ..||.+++++|+++|+
T Consensus 238 m~r~AekqlqssL~q~~-~~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 67778888888887665 4577777777776531 111 1347789999999999
Q ss_pred HHHHcCCCcH---------------------HHHHHHHHHhcCchhhHHHHHh-hhccC
Q 031846 56 QAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKH-GLGQQ 92 (152)
Q Consensus 56 kAleldP~Ne---------------------~YrkaLe~~~kapel~~e~~~~-~~~q~ 92 (152)
++++++|.|- -||+.|.|=..+|||..+|+-- +.+||
T Consensus 315 ~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 315 LVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 9999999993 4999999999999999999863 34444
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.91 E-value=0.041 Score=47.95 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHH-HhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLW-CLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~-nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|...|++|.+.+|++.-+.. ..+..+... +++++|...++++++.+|+|+.
T Consensus 134 ~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-----------g~~~~Al~~l~~~~~~~P~~~~ 188 (398)
T PRK10747 134 EARANQHLERAAELADNDQLPVEITRVRIQLAR-----------NENHAARHGVDKLLEVAPRHPE 188 (398)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCCHH
Confidence 57788888888888888754433 336666554 4888888888888888888863
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.89 E-value=0.082 Score=39.42 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 3 LDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
..+...+++.++-+|+. ..+.+.|+.++...| +|++|+..|+++++..|++.+
T Consensus 28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g-----------~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG-----------DYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhhCCCHHH
Confidence 45566788999999998 778888999998754 999999999999999887753
No 152
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.84 E-value=0.0057 Score=34.99 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031846 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~ 19 (152)
++++|+..|++||++||++
T Consensus 16 ~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 16 DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHHHSTTH
T ss_pred CchHHHHHHHHHHHHCcCC
Confidence 4789999999999999974
No 153
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.84 E-value=0.01 Score=53.64 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhc---CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 1 MILDAISKLEEALMV---SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 1 mieeAIs~leeAL~i---dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
.||-+...|++||.. +-..+|.|||||-+..-- ++|--|..||+-||.-||+|...-.+|.+.
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-----------GD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-----------GDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-----------cchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 367788999999964 335788999999887654 599999999999999999998666666544
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.82 E-value=0.0044 Score=51.53 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhc--CCC----ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 2 ILDAISKLEEALMV--SPN----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~leeAL~i--dP~----~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
+++|+..|++|+++ .-. -+.++.++|.+|... .+++++|+++|++|+++--
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~----------~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ----------LGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT----------T--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHH
Confidence 57899999999976 222 245688889998764 0488899999999888743
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.82 E-value=0.046 Score=37.31 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCC-ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 2 ILDAISKLEEALMVSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~leeAL~idP~-~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
+++|+..+++++.+.+. ...++.+++..+...+ ++++|+.+|.+++...|+
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-----------KYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence 57888888889988888 6888888888887643 788999999999999997
No 156
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.80 E-value=0.04 Score=50.92 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ 75 (152)
++++|+..|++.-..-.+.-..+=..|..|.++| ++++|...|.+-|+.||+|-.|-..|+.+-
T Consensus 19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----------~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----------RKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4789999999999999999888888999999876 999999999999999999999888887664
No 157
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.74 E-value=0.037 Score=49.63 Aligned_cols=68 Identities=25% Similarity=0.258 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------HH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------LY 67 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------~Y 67 (152)
-.+||..++++|+.+|.+.+.+...+..+.+. ++++.|+++.++|+++.|++- .|
T Consensus 216 E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-----------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 216 EVEAIRLLNEALKENPQDSELLNLQAEFLLSK-----------KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 36899999999999999988888888888764 589999999999999999884 47
Q ss_pred HHHHHHHhcCchh
Q 031846 68 QKSLEVAAKAPEL 80 (152)
Q Consensus 68 rkaLe~~~kapel 80 (152)
++||-.....|-+
T Consensus 285 e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 285 ENALLALNSCPML 297 (395)
T ss_pred HHHHHHHhcCcCC
Confidence 7888777666654
No 158
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.73 E-value=0.038 Score=53.55 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
++|-.++.+|=.++|-.+..||-.|..+.. ++++++|.++|.-|+.+||+|..
T Consensus 667 ~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~-----------~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 667 DEARSCLLEASKIDPLSASVYYLRGLLLEV-----------KGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHhhHHHHH-----------HHhhHHHHHHHHHHHhcCCCCcH
Confidence 678889999999999999999999999875 46999999999999999999963
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.72 E-value=0.033 Score=55.65 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~ 81 (152)
.++|.+.|-.|.+++|++--||-.|||.|.+..- -..++++..||++++.+.|+.+ -.+-.++..|-+..+
T Consensus 53 le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~d--------Il~ld~~~~~yq~~~l~le~q~-~nk~~~lcKk~~d~~ 123 (1238)
T KOG1127|consen 53 LEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYND--------ILDLDRAAKCYQRAVLILENQS-KNKGEALCKKFDDQY 123 (1238)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHHHHHccch--------hhhhhHhHHHHHHHHHhhhhhh-hhHHHHHHHHHhhHH
Confidence 5899999999999999999999999999986321 2489999999999999999766 223334444444443
Q ss_pred HHHHHh
Q 031846 82 MEIHKH 87 (152)
Q Consensus 82 ~e~~~~ 87 (152)
-++-+|
T Consensus 124 ~~fk~h 129 (1238)
T KOG1127|consen 124 YQFKKH 129 (1238)
T ss_pred HHHHHH
Confidence 333333
No 160
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.032 Score=55.22 Aligned_cols=58 Identities=26% Similarity=0.376 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
|-+.|+..|++||+|||...+|+.-||..-..+. | -+.+.+|+..+++|..+||+|+.
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~----d----~~s~~~~~~ll~~ay~~n~~nP~ 271 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLNFN----D----SDSYKKGVQLLQRAYKENNENPV 271 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc----c----hHHHHHHHHHHHHHHhhcCCCcH
Confidence 5678999999999999999999999998876532 1 26899999999999999999973
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.64 E-value=0.049 Score=43.27 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCCh---HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQ---DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~---dA~~nLGnAy~~~g~l~pd~---~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
.+++|+..|++.++..|++. +|+|.+|.++..+. ++. ..-.....+|+..|++-++.-|+.+-..++.+
T Consensus 57 ~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~ 131 (203)
T PF13525_consen 57 DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK 131 (203)
T ss_dssp -HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence 36899999999999999976 58999999987642 111 11235678999999999999999976555543
No 162
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.54 E-value=0.067 Score=45.96 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
+++|-..|.+||++.|+.+.++.|||..|.-. ++++.|..++.+|...-+.|..-+.+|.+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~-----------gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLR-----------GDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 68899999999999999999999999999854 59999999999999999988876666643
No 163
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.51 E-value=0.072 Score=36.36 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHH-HHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGN-AHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGn-Ay~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
+++|+..+++++..+++........+. ++... +++++|+.+|++++..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYEL-----------GDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCC
Confidence 457788888888877777555555555 56554 488888888888888777
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.51 E-value=0.073 Score=40.19 Aligned_cols=62 Identities=21% Similarity=0.162 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 031846 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~ 75 (152)
.+++|+..|++++.-.|+ +......++.++...| +.++|+..+-.++. +.-+.|++++..+.
T Consensus 53 ~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g-----------r~~eAl~~~l~~la--~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 53 RYDEALALLEEALEEFPDDELNAALRVFLALALYNLG-----------RPKEALEWLLEALA--ETLPRYRRAIRFYA 117 (120)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 378999999999998888 8888888899988765 99999999999987 44459999987654
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.44 E-value=0.014 Score=32.82 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031846 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~ 19 (152)
.+++|+..|+++|+++|++
T Consensus 16 ~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp -HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 3789999999999999986
No 166
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.046 Score=49.04 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
++.|+..+++||+-||+...|-.-||.++.. +++|++|++.++++++.||+.
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-----------~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELA-----------KGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHh-----------ccchHHHHHHHHHHHHhChHH
Confidence 4678999999999999999999999999885 459999999999999999986
No 167
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.34 E-value=0.046 Score=50.51 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.+++|++..++||+.+|...+.|...|.+|-..| ++++|.++.+.|-.+|+.+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-----------~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-----------DLKEAAEAMDEARELDLAD 261 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhCChhh
Confidence 3689999999999999999999999999998765 9999999999999999977
No 168
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.24 E-value=0.08 Score=42.51 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH-HHhc
Q 031846 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE-VAAK 76 (152)
Q Consensus 5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe-~~~k 76 (152)
|+..|.+|+.+.|..-..|..||..+... ++.=.|+-+|-|++-..--.+..+.+|. +.++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~-----------~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ-----------GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc-----------cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999874 4888899999999987766777777774 3455
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.049 Score=50.49 Aligned_cols=79 Identities=15% Similarity=0.036 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-------------HH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-------------LY 67 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-------------~Y 67 (152)
|-|.|...+|++|+++|..-.|..-+...+.. ++.++.++...+++|...|+.. .|
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-----------Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQV-----------EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-----------hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 34789999999999999999999999998876 4599999999999999999975 48
Q ss_pred HHHHHHHhcCchhhHHHHHhhhc
Q 031846 68 QKSLEVAAKAPELHMEIHKHGLG 90 (152)
Q Consensus 68 rkaLe~~~kapel~~e~~~~~~~ 90 (152)
+++++-+.+|.-+.++-++.+.|
T Consensus 488 Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHHHHHHHHHhcCccchHHHHH
Confidence 88888888888888887776543
No 170
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.10 E-value=0.086 Score=43.32 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCCh------HHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQ------DEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~------~eA~~~~ekA~~~FqkAleldP~Ne~Yrka 70 (152)
.++++..|.+|++++|+...+|+.+|..+...-...+.. ....+....|+.||-+|+...++ ..|+..
T Consensus 274 ~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~-~~~~~~ 347 (352)
T PF02259_consen 274 SDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK-YVRQDL 347 (352)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC-chHHHh
Confidence 578999999999999999999999999997652222211 13445777899999999999998 444433
No 171
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.06 E-value=0.035 Score=51.21 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
+-.|+..+.+|++++|....+|+.-|.+...+ +.|.+|+.-|++...+.|+....++.+.
T Consensus 54 ~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l-----------~~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 54 FGGALHDALKAIELDPTYIKAYVRRGTAVMAL-----------GEFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred hhhHHHHHHhhhhcCchhhheeeeccHHHHhH-----------HHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 45678888888888888888888888887753 5888888888888888888876666653
No 172
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.04 E-value=0.1 Score=47.27 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel 80 (152)
=+...|+.++..|+++..+.-||..+.+. +.|.||.++|+.|+...|+-+.|-..=..+++.-+.
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-----------~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKN-----------KLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 36678999999999999999999999985 499999999999999999998877766666655443
No 173
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.068 Score=53.03 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCC-hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNR-HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~-~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+|.|-..|.+++..||++ --+++-||..|...| +++.|+.||++.++.+|+|.
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~-----------dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG-----------DLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHhc-----------hHHHHHHHHHHHHHhCcchH
Confidence 344444444444444444 334444444444332 44445555555555555443
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.88 E-value=0.047 Score=47.21 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+-|.+.|.+||++.|+...-|+.+|.-..+- ++++.|...|++.|++||++-
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~eka-----------g~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKA-----------GEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhc-----------ccHHHHHHHHHHHHcCCcccc
Confidence 5678999999999999999999999876654 499999999999999999873
No 175
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.11 Score=44.94 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH--H--HHHHHHHhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--Y--QKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~--Y--rkaLe~~~ka 77 (152)
|.+||++|-+||.+||..+.-|-|-...|.++ .+|+.+..--.+|++++|+--. | ...+-...+.
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~-----------~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKL-----------KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHh-----------hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 67999999999999999988888888888864 5999999999999999996542 2 2334455777
Q ss_pred chhhHHHHHh
Q 031846 78 PELHMEIHKH 87 (152)
Q Consensus 78 pel~~e~~~~ 87 (152)
+|+=..|++.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 8888888887
No 176
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.80 E-value=0.11 Score=44.16 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH----HhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV----AAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~----~~ka 77 (152)
+++|.-.|++..+.-+.....+..+++++..+| +|++|.+.+++|++.+|+|+...-++-+ ..|.
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~-----------~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG-----------HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT------------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 578999999977777788888888899988765 9999999999999999999865555422 2444
Q ss_pred chhhHHHHHhh
Q 031846 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pel~~e~~~~~ 88 (152)
.+-..+.-.++
T Consensus 252 ~~~~~~~l~qL 262 (290)
T PF04733_consen 252 TEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHC
T ss_pred hhHHHHHHHHH
Confidence 44444444444
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.58 E-value=0.033 Score=33.06 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCcHHHHHHH
Q 031846 53 YFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 53 ~FqkAleldP~Ne~YrkaL 71 (152)
||+|||++||+|......|
T Consensus 1 ~y~kAie~~P~n~~a~~nl 19 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNL 19 (34)
T ss_pred ChHHHHHHCCCCHHHHHHH
Confidence 6899999999997655544
No 178
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.12 E-value=0.073 Score=49.20 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
|+.||..|-+||++||+.+.-+-|...|+.+. ++|-.|+.=+.+|++++|..-
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~-----------e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKV-----------ESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheee-----------chhhhHHHHHHhhhhcCchhh
Confidence 78999999999999999988888888898874 599999999999999999884
No 179
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.12 E-value=0.1 Score=50.49 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
++.|+..|.+.+.++|++.++|.||.-+|..++ .-.+|..++++|++-|=+|
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~-----------~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK-----------KKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-----------hhHHHHHHHHHHhhcCCCC
Confidence 578999999999999999999999999999864 7788999999999888655
No 180
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.98 E-value=0.25 Score=45.84 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka 70 (152)
+++|...|+..+..-|+++-.+=-.|.++..++ +.++|.+.|++|+.++|+...-+-+
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n-----------k~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN-----------KAKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCccHHHHH
Confidence 578999999999999999877777788888754 9999999999999999998653333
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.92 E-value=0.11 Score=46.55 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
++.|+...++|+++.|+.-++|+.|+.+|..+| +||+|+.... ++=..|.++
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~-----------d~e~ALlaLN-s~Pm~~~~~ 301 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLG-----------DFENALLALN-SCPMLTYKD 301 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC-----------CHHHHHHHHh-cCcCCCCcc
Confidence 689999999999999999999999999999865 9999996665 333334444
No 182
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.87 E-value=0.088 Score=48.82 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 1 mieeAIs~leeAL~i--------dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
.+|.|+..|++||++ .|.-....-++|++|..++ +|++|+..|++||.+-
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-----------k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-----------KYDEAVNLYEEALTIR 271 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHH
Confidence 379999999999999 7877778888999999764 9999999999999875
No 183
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.19 Score=45.26 Aligned_cols=56 Identities=29% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr 68 (152)
|+|||.++.--.+-+|++-.++--||-.|+.. .+|+.|.+||++--.+-|+.+.||
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-----------Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRL-----------QEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhChHHHHHH
Confidence 78999999999999999999999999999863 599999999999999999988655
No 184
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.83 E-value=0.041 Score=50.20 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 23 ~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+---||-|.++| .|++|++||-++++++|.|+.
T Consensus 100 iKE~GN~yFKQg-----------Ky~EAIDCYs~~ia~~P~NpV 132 (536)
T KOG4648|consen 100 IKERGNTYFKQG-----------KYEEAIDCYSTAIAVYPHNPV 132 (536)
T ss_pred HHHhhhhhhhcc-----------chhHHHHHhhhhhccCCCCcc
Confidence 456799999876 999999999999999999863
No 185
>PRK10941 hypothetical protein; Provisional
Probab=93.81 E-value=0.37 Score=41.14 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
++.|..+.+..|.++|+++.-+--.|.+|..++ .+..|..-++.-|+..|+.+..
T Consensus 197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHhCCCchhH
Confidence 688999999999999999999999999999865 8999999999999999988754
No 186
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.28 Score=46.36 Aligned_cols=63 Identities=25% Similarity=0.251 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc-------------cCCCChHHHH----------HhHHHHHHHHHHHHH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHA-------------FLTPDQDEAK----------EYFNKATLYFQQAVD 59 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g-------------~l~pd~~eA~----------~~~ekA~~~FqkAle 59 (152)
..||+.|-++..+-|+++..+-.||..|-.-| ..+|-..|-. ...|+|+.||+||--
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 36888899999999999999999988876543 1223332222 267999999999999
Q ss_pred cCCCcH
Q 031846 60 EEPSNE 65 (152)
Q Consensus 60 ldP~Ne 65 (152)
++|+-.
T Consensus 655 iqp~~~ 660 (840)
T KOG2003|consen 655 IQPNQS 660 (840)
T ss_pred cCccHH
Confidence 999875
No 187
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.09 Score=45.57 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
++-......+||+++|+...++|-||+.+.. ...|++|+.+.++|..+
T Consensus 60 ~~~v~~dcrralql~~N~vk~h~flg~~~l~-----------s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 60 WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-----------SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-----------hccccHHHHHHHHHHHH
Confidence 3456677899999999999999999999875 35899999999999654
No 188
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=93.17 E-value=0.56 Score=31.81 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHHHHHHhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----~YrkaLe~~~ka 77 (152)
+++|+....+|++.|-. -+..+|...|.+|++.|.+++..+|+.. .-++..+....+
T Consensus 5 ~~~A~~li~~Av~~d~~-------------------g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 5 LSKAKELISKALKADEA-------------------GDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46677777777655541 1345677899999999999999998643 344555666666
Q ss_pred chhhHHHH
Q 031846 78 PELHMEIH 85 (152)
Q Consensus 78 pel~~e~~ 85 (152)
-++...+.
T Consensus 66 E~lk~~~~ 73 (77)
T smart00745 66 EEIKKSLL 73 (77)
T ss_pred HHHHHHHh
Confidence 66655554
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.11 E-value=0.091 Score=48.94 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhc----CCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 2 ILDAISKLEEALMV----SPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~leeAL~i----dP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
++.||+.|.++|.+ --. -+..-|.|||+|+-+ .+|++||+|++|=|.|--
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll-----------~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL-----------KEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 68899999987744 333 344578899999953 599999999999777654
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.00 E-value=0.49 Score=42.48 Aligned_cols=85 Identities=25% Similarity=0.240 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHH-hcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHHHHHhcC
Q 031846 2 ILDAISKLEEAL-MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL-~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~YrkaLe~~~ka 77 (152)
.++|+..++.+| .-++.++|.+.-+|.+|-.. |+..... -.+.+++|+++|.||++++|+.- .+--.|.+....
T Consensus 198 re~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-~~~s~~~-d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 198 REKALQILLPVLESDENPDPDTLGLLGRIYKDL-FLESNFT-DRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHHcCcc-chHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence 478999999955 67778889999999999654 3321111 23459999999999999998642 344456666666
Q ss_pred chhhHHHHHhh
Q 031846 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pel~~e~~~~~ 88 (152)
.+-..|+++-+
T Consensus 276 ~~~~~el~~i~ 286 (374)
T PF13281_consen 276 FETSEELRKIG 286 (374)
T ss_pred ccchHHHHHHH
Confidence 66666666544
No 191
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.95 E-value=0.021 Score=51.21 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.||..|..||+|||+.+.-|=--|.|...+ +++++|...|..|+++|=+-
T Consensus 166 ~airD~d~A~ein~Dsa~~ykfrg~A~rll-----------g~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 166 AAIRDCDFAIEINPDSAKGYKFRGYAERLL-----------GNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hhhhhhhhhhccCcccccccchhhHHHHHh-----------hchHHHHHHHHHHHhccccH
Confidence 456666666666666666666666666654 48899999999988877544
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.70 E-value=0.13 Score=44.47 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHhc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVAAK 76 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe~~~k 76 (152)
++.|.+.|+-.+++||.+.-|+-|.|.+++.- ++|+-|.+-|.+=..-||+++ +|-.-.++.++
T Consensus 115 fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~-----------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~ 183 (297)
T COG4785 115 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-----------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPK 183 (297)
T ss_pred chHHHHHhhhHhccCCcchHHHhccceeeeec-----------CchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHH
Confidence 67899999999999999999999999998864 499999999999999999987 46555555554
Q ss_pred Cc
Q 031846 77 AP 78 (152)
Q Consensus 77 ap 78 (152)
.-
T Consensus 184 ~A 185 (297)
T COG4785 184 QA 185 (297)
T ss_pred HH
Confidence 43
No 193
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.69 E-value=0.32 Score=29.67 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH--HHHHcCCCc
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--QAVDEEPSN 64 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq--kAleldP~N 64 (152)
+.++-+|-.+... +++++|++.|+ -+..++|+|
T Consensus 2 e~~y~~a~~~y~~-----------~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQK-----------GKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHhcccC
Confidence 5678888888765 49999999955 999999986
No 194
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=0.44 Score=41.41 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----------
Q 031846 2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---------- 65 (152)
.++|+.+|++|++|=-+- +.-+.-||..|-+ -..++++|+.||++|-+-=-..+
T Consensus 89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs----------dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES----------DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh----------hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 367888888888653221 1113344444432 12477777888777766544433
Q ss_pred ---HHHHHHHHHhcCchhhHHHHHhhh
Q 031846 66 ---LYQKSLEVAAKAPELHMEIHKHGL 89 (152)
Q Consensus 66 ---~YrkaLe~~~kapel~~e~~~~~~ 89 (152)
.|.--|+...+|...+.++.++-+
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466678889999999998888765
No 195
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.03 E-value=0.58 Score=42.20 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g 34 (152)
-+.||..|.+.++.||.--+++.-|||.|.+.|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG 83 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG 83 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999987
No 196
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.83 E-value=0.12 Score=29.14 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031846 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~ 19 (152)
.+++|+..|+++++++|++
T Consensus 16 ~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 16 DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp SHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHhhCCCC
Confidence 4789999999999999953
No 197
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.65 E-value=1.7 Score=37.27 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCC-hHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 6 ISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPD-QDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 6 Is~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd-~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
...|++.++-||.+-++|-.|-.-.-.+-....+ ..+...-.|+-+..|+|||+.||+++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~ 65 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE 65 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4579999999999999999987766544222222 45566778999999999999999997
No 198
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.62 E-value=0.28 Score=44.22 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++||+.|-.||++||..+..|-..+.++.++. ....|+.-+..|+++||+..
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence 689999999999999999999999999999864 88899999999999999874
No 199
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.54 E-value=0.77 Score=32.40 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhc----CCC-----ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMV----SPN-----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~i----dP~-----~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
|.+|++.+.+.+.. +.. ..-|+.+++.++..+| ++++|+..+++||++--++
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHH
Confidence 56676666666643 222 2467788888888765 9999999999999876544
No 200
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=91.42 E-value=1.1 Score=29.91 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++.|+....+|++.|-.. +..+|.+.|.+|+++|.+++..+|+.+
T Consensus 1 y~~~A~~~~~~Av~~D~~g-------------------~~~~A~~~Y~~ai~~l~~~~~~~~~~~ 46 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAG-------------------NYEEALELYKEAIEYLMQALKSESNPE 46 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTT-------------------SHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 4788888888888776533 235677799999999999999997443
No 201
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=91.25 E-value=1.4 Score=30.19 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka 70 (152)
+++.|+..+.+|++.|-.. +..+|...|.+|++.|.+++..+|+. ..+..
T Consensus 2 ~~~~A~~l~~~Av~~D~~g-------------------~y~eA~~~Y~~aie~l~~~~k~e~~~-~~k~~ 51 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAG-------------------NYEEALRLYQHALEYFMHALKYEKNP-KSKES 51 (75)
T ss_pred hHHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHhhCCCH-HHHHH
Confidence 4677888888886554332 23456778999999999999999954 33333
No 202
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.55 Score=41.25 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
|=|+++...+.|..+|.+-.|||..|.|+.. --+.++|..-|+++|+++|.=
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa-----------~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-----------VWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-----------hcCHHHHHHHHHHHHhcChhh
Confidence 4578999999999999999999999999974 348999999999999999964
No 203
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=91.20 E-value=0.83 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=25.1
Q ss_pred hHHHHHhH--HHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 20 HDTLWCLG--NAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 20 ~dA~~nLG--nAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
++|.|+|| ..|.. |.. -...++++|+.+|++|-+.+
T Consensus 1 a~A~~~lg~~~~~~~-g~~-----g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYN-GKG-----GVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHH-TST-----SSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhh-ccC-----CccccccchHHHHHHHHHcc
Confidence 47899999 65543 220 01347999999999998764
No 204
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.19 E-value=0.35 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=24.9
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
+++|-.||.+-.. .++|++|++=|++||++.
T Consensus 1 Adv~~~Lgeisle-----------~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 1 ADVYDLLGEISLE-----------NENFEQAIEDYEKALEIQ 31 (38)
T ss_pred CcHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHH
Confidence 3677888888764 479999999999999874
No 205
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.05 E-value=0.78 Score=44.22 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.|+|||.+|..||.++|++-..|..|......++ +|+-..+-=.+-|+++|.+
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR-----------d~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR-----------DYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHhhhhh
Confidence 3799999999999999999999999998876543 5555555555555555554
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.91 E-value=0.64 Score=42.13 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCC----ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 1 MILDAISKLEEALMVSPN----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 1 mieeAIs~leeAL~idP~----~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
.+++||+.|++++....+ +|-.+|.||..+..+ .+|++|.+||.+.++++.-
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-----------~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-----------HDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-----------chHHHHHHHHHHHHhcccc
Confidence 378999999999853332 567799999999875 4999999999999998764
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.75 E-value=1.3 Score=38.07 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
+++|...|..+++-.|+ -+|+++-||.....+ ++-|+|...|++.++.=|+.+..+.+.+..
T Consensus 194 y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-----------~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 194 YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-----------GNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68999999999987666 458899999999875 499999999999999999999877766543
No 208
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=90.55 E-value=0.58 Score=38.88 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcC---CCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVS---PNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~id---P~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|++|+++- -.. .+.+-+++..+..+ ++|++|+++|++....--++.
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-----------~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-----------GRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHTCCCHC
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHhhccc
Confidence 3689999999999762 222 23455667777765 499999999999998655543
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.40 E-value=1.1 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH-HHHHHHHHH------hcCchhhHHHHHhhh
Q 031846 44 KEYFNKATLYFQQAVDEEPSNE-LYQKSLEVA------AKAPELHMEIHKHGL 89 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne-~YrkaLe~~------~kapel~~e~~~~~~ 89 (152)
.+++++|+...++++.+||-|| .|+..+.+. ..|.+.|..+.+.+.
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4599999999999999999987 566655554 344555666655554
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.32 E-value=1.4 Score=37.86 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE 72 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~---~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne-----~YrkaLe 72 (152)
+++|++.|+......|-. ..+...|+-|+++- +++++|+.++++=+.+.|.|+ .|-+.|.
T Consensus 50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-----------~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-----------GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 689999999999887764 57899999999874 599999999999999999986 4666664
No 211
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=90.24 E-value=2.1 Score=28.99 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++.|+....+|++.|-.. +.++|...|.+|++.|.+++..+|+..
T Consensus 2 ~~~~a~~l~~~Av~~D~~g-------------------~~~~Al~~Y~~a~e~l~~~~~~~~~~~ 47 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDG-------------------NYEEALELYKEALDYLLQALKAEKEPK 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 4567777777776655441 235677899999999999999998643
No 212
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=90.22 E-value=0.16 Score=47.94 Aligned_cols=35 Identities=46% Similarity=0.598 Sum_probs=30.8
Q ss_pred ccccccCCCchhhhhhHHHHHHHHHHHHHhhhcCC
Q 031846 109 TSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHM 143 (152)
Q Consensus 109 ~~~~k~~sd~~ydv~gw~il~~~iv~wv~~a~~~~ 143 (152)
..||||+||=+|-|.|=||-++.+|+++|||-.-+
T Consensus 501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~ 535 (576)
T PTZ00441 501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV 535 (576)
T ss_pred ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence 45777889999999999999999999999998544
No 213
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.20 E-value=1.8 Score=32.91 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 3 LDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA---~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
-.|....|+.+..++++..+ +.-=|.++..++..+-|.+--.-++--|++||.+++.+.|+-
T Consensus 13 iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 13 IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 46889999999999998853 444499998887777666666668889999999999999976
No 214
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=90.15 E-value=0.57 Score=43.45 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
++.|...+++.++++|++...|..|.|+|.+.| ++++|.+.|++..+..
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G-----------~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG-----------RQAEAAKVVETLKRKG 558 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC-----------CHHHHHHHHHHHHHcC
Confidence 578899999999999999999999999999865 9999999999877653
No 215
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.75 E-value=0.38 Score=24.15 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031846 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~ 19 (152)
.+++|+..|+++++++|++
T Consensus 16 ~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 16 DYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHccCCCC
Confidence 3689999999999999864
No 216
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=1.5 Score=39.69 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
--||..+.+||.++|+|..|+|.=..++.. +++|++|+...+.-+.++-++
T Consensus 136 Rs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-----------Le~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 136 RSALNDCSAALKLKPTHLKAYIRGAKCLLE-----------LERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhhhHHHHH-----------HHHHHHHHHHHhhhhhhhHHH
Confidence 356777777777777777777777777764 346666666665555554433
No 217
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=89.39 E-value=0.76 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=26.2
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
.+|.++||..|.. |.- ...+.++|+.+|++|.+.+
T Consensus 1 ~~a~~~lg~~~~~-G~g------~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 1 AEAQYNLGQMYEY-GLG------VKKDLEKALEYYKKAAELG 35 (36)
T ss_pred CHHHHHHHHHHHc-CCC------CCcCHHHHHHHHHHHHHcc
Confidence 3688999999863 321 2358999999999998764
No 218
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.13 E-value=1.4 Score=36.17 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
++.|...|++|++-... ....+|-+|..+..+| ++++|+.+|.+.+..--.+. ..+.+++
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~~~s~-~~~l~~~ 206 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSKKASK-EPKLKDM 206 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCCCCCC-cHHHHHH
Confidence 57899999999965433 2467899999999876 99999999999987544333 3344433
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.58 E-value=2 Score=36.93 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 1 MILDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA---~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+...++-+.+.|+|+++ +|-.|.++.. ..+|...=...-.+|+..|+.-|+-=|+.+
T Consensus 86 ~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~---~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 86 EYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF---QIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred cHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc---cCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 3789999999999999998775 7888999773 455555555677889999999999999886
No 220
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.53 E-value=2.7 Score=36.40 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~ 81 (152)
++.+++.+++-+.++|-+..+|..|=.+|...| +...|...|+....++..-+-++|.-+.-+.-.+...+.+..+
T Consensus 169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g----~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~~~~~~~ 244 (280)
T COG3629 169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG----RQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEILRQDPLDN 244 (280)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC----CchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhccccccc
Confidence 578899999999999999999999999998766 5567777777777777777778887664333333344444433
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=88.46 E-value=0.58 Score=43.78 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~leeAL~idP~------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
++.||+.+++-|.|.-+ -..|+|.|||+|..+ +..++|+.+-++++++
T Consensus 291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-----------g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-----------GEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHH
Confidence 68899999998877654 456899999999965 4999999999988765
No 222
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=88.14 E-value=1.4 Score=40.86 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHHHHHh
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSLEVAA 75 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~Ne~YrkaLe~~~ 75 (152)
+++|...|++..+ | +..+|..|..+|.+.| +.++|++.|++.++ +.|+...|.-.+....
T Consensus 376 ~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G-----------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 376 MEDARNVFDRMPR--K-NLISWNALIAGYGNHG-----------RGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred HHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 5777777777654 2 3456777777777654 78888888888766 6777777776665443
No 223
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.13 E-value=0.74 Score=43.71 Aligned_cols=53 Identities=21% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHh---------cCC---------CChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 2 ILDAISKLEEALM---------VSP---------NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~leeAL~---------idP---------~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
|+-++-.|.+||+ +.| +.-+.+||+|.+|...| +.-.|.+||++|+..--.
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g-----------rPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG-----------RPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----------CcHHHHHHHHHHHHHHhc
Confidence 4567778888885 122 35688999999999755 999999999999998777
Q ss_pred cH
Q 031846 64 NE 65 (152)
Q Consensus 64 Ne 65 (152)
|+
T Consensus 368 nP 369 (696)
T KOG2471|consen 368 NP 369 (696)
T ss_pred Cc
Confidence 76
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.90 E-value=4.4 Score=32.83 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCCh----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHH-----HHHHHHcCCCcHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLY-----FQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~-----FqkAleldP~Ne~YrkaL 71 (152)
.++|...+++||++.-... .+|...|..|..+| +.+.|..+|+.|.+. =.+-|++||--.+.-+.|
T Consensus 93 ~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g----~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 93 DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG----NDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC----chHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 4789999999999876644 46888999999876 456677777777653 356778888665555554
No 225
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.57 E-value=0.91 Score=32.15 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=10.2
Q ss_pred HhHHHHHHHHHHHHHc
Q 031846 45 EYFNKATLYFQQAVDE 60 (152)
Q Consensus 45 ~~~ekA~~~FqkAlel 60 (152)
++|++|+++|..||+.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4666666666666653
No 226
>PLN03218 maturation of RBCL 1; Provisional
Probab=87.37 E-value=4.6 Score=40.64 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcC-CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHh
Q 031846 2 ILDAISKLEEALMVS-PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE--EPSNELYQKSLEVAA 75 (152)
Q Consensus 2 ieeAIs~leeAL~id-P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel--dP~Ne~YrkaLe~~~ 75 (152)
+++|+..|++..+.+ +.+...|..|-.+|.+.| ++++|++.|++..+. .|+...|...++.+.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G-----------~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-----------DWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455555555555544 223344445555555433 666777777666655 566556666555443
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.21 E-value=0.88 Score=43.57 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCch
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kape 79 (152)
.|+..+..||++||..-.|||.|..++..+ .++.+|++|-.-+....|.+..-...+++.++.+.
T Consensus 429 ~AlrDch~Alrln~s~~kah~~la~aL~el-----------~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~ 493 (758)
T KOG1310|consen 429 LALRDCHVALRLNPSIQKAHFRLARALNEL-----------TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS 493 (758)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHH-----------hhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence 578888999999999999999999999875 48999999999999999977766666666655543
No 228
>PLN03077 Protein ECB2; Provisional
Probab=86.74 E-value=2.6 Score=40.04 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~Ne~YrkaL 71 (152)
+++|...|++. +.+..+|..|-.+|..+| +.++|++.|++.++ +.|+...|--.|
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G-----------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHG-----------KGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 45666666654 344556666666666654 66666666666555 456555544444
No 229
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.71 E-value=0.9 Score=25.13 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk 56 (152)
.++++||.+|..+| ++++|...+++
T Consensus 2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQG-----------DPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence 57899999999866 88888887653
No 230
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.48 E-value=4.5 Score=28.30 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+.|+..+.+|++.|-.- +-.+|...|.+|+++|.+++..+|+..
T Consensus 3 ~~~a~~l~~~Ave~D~~g-------------------~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 3 ELAAKEVLKRAVELDQEG-------------------RFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred hHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 456777777776655332 224567789999999999999999654
No 231
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.21 E-value=1.1 Score=31.95 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHhcCch
Q 031846 44 KEYFNKATLYFQQAVDEEPSN------ELYQKSLEVAAKAPE 79 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~N------e~YrkaLe~~~kape 79 (152)
++.|++|.++..+||..|-.. ..|++++++..++..
T Consensus 2 k~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 2 RGYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred chHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 358889999999999888753 257777776665543
No 232
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.12 E-value=3.8 Score=29.06 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+.|+....+|++.|-.. +..+|.-+|.+|++.+.+++...||+..
T Consensus 4 ~~A~~~a~~AVe~D~~g-------------------r~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 4 EMARKYAINAVKAEKEG-------------------NAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 56777888888766543 1234556899999999999999998863
No 233
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.40 E-value=6.1 Score=27.85 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
+.||+...+|++.|-.. +-.+|...|.+|+++|..++..+
T Consensus 4 ~~Ai~~a~~Ave~D~~g-------------------~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAVQRDQEG-------------------RYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHHHcc-------------------CHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777777777766443 11345567888888888886555
No 234
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.72 E-value=5.9 Score=39.89 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHh--cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHHHHHhcC
Q 031846 2 ILDAISKLEEALM--VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~--idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle--ldP~Ne~YrkaLe~~~ka 77 (152)
+++|+..|++..+ +.|+- ..|..|-.+|.+. +++++|++.|++..+ +.|+...|...+....+.
T Consensus 700 ~eeA~~lf~eM~~~g~~Pdv-vtyN~LI~gy~k~-----------G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTV-STMNALITALCEG-----------NQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3455555555433 23332 3455555555443 367777777776544 457777777777666442
Q ss_pred --chhhHHHHHhhhcc
Q 031846 78 --PELHMEIHKHGLGQ 91 (152)
Q Consensus 78 --pel~~e~~~~~~~q 91 (152)
.+.=.++++++...
T Consensus 768 G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 768 DDADVGLDLLSQAKED 783 (1060)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 33333444444433
No 235
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=0.69 Score=41.70 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
.|+..-..+|+.+++...|||..|.++..+ .++++|.+-++.|...+|++..-.+.++-
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~-----------~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLL-----------KNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhh-----------hchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 344455677889999999999999999863 59999999999999999999766655543
No 236
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=84.44 E-value=3.2 Score=34.75 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHH
Q 031846 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKS 70 (152)
Q Consensus 5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----~Yrka 70 (152)
|...||++|+.-|++.+.+.+--.-+..+ ++.+.|-..|++|+..-|.+. +|.+=
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~-----------~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKL-----------NDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 55555555555555544443333333322 356666666666666666555 55543
No 237
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=84.42 E-value=1.9 Score=42.28 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-----------------------CCChHHHHHhHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-----------------------TPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-----------------------~pd~~eA~~~~ekA~~~FqkAl 58 (152)
++||+..||++|+.-|+.|..|--||.++-+++-+ ..+.+|-.++.-+|-..+++|.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 68999999999999999999999999998765311 0011222235666777777777
Q ss_pred HcCCCcH-HHHHHHHHH
Q 031846 59 DEEPSNE-LYQKSLEVA 74 (152)
Q Consensus 59 eldP~Ne-~YrkaLe~~ 74 (152)
--||+|. +|..++.|-
T Consensus 747 lkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRME 763 (913)
T ss_pred hcCCCcchhHHHHHHHH
Confidence 7777775 455555443
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.34 E-value=1.8 Score=40.67 Aligned_cols=53 Identities=15% Similarity=0.007 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcC------CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVS------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~id------P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++++.+. .....++..+|.+|...| +.++|..++.+|+++-....
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G-----------~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG-----------RKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCccc
Confidence 578999999999863 233457888999998765 89999999999999887654
No 239
>PLN03077 Protein ECB2; Provisional
Probab=83.44 E-value=3.1 Score=39.55 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
++.|....+++++++|++...|..|+|+|...| ++++|.+..+.--+.
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-----------~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAG-----------KWDEVARVRKTMREN 720 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-----------ChHHHHHHHHHHHHc
Confidence 456777888999999999999999999999765 899999999877543
No 240
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.37 E-value=3.2 Score=37.66 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
.+|+|+.+|+.|++..--.+-.-||+..++.+. ++++.|+++.-..++
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-----------~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-----------RQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-----------hhHHHHHHHHHHHHH
Confidence 479999999999999998999999999999875 488999887665554
No 241
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=83.36 E-value=4.3 Score=36.14 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhc--CCC---------------ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 3 LDAISKLEEALMV--SPN---------------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~leeAL~i--dP~---------------~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
..||..|+.-|.. +|+ .-.|++++|..|.+ ++++|..+-.++..+++++|++.++.--.|+
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K--~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~ 343 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSK--LITSDPKEQLENLEKSLEYYKWVVDYCEKHP 343 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHcc--ccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4678888887764 444 12589999999987 5789999999999999999999998655554
Q ss_pred H
Q 031846 66 L 66 (152)
Q Consensus 66 ~ 66 (152)
.
T Consensus 344 ~ 344 (371)
T PF12309_consen 344 E 344 (371)
T ss_pred h
Confidence 4
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.03 E-value=2.7 Score=39.60 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHH------HHHHHHHHHHc--------CCCc-
Q 031846 2 ILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNK------ATLYFQQAVDE--------EPSN- 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ek------A~~~FqkAlel--------dP~N- 64 (152)
.+|||..|.+.++.+|. +-..++||-++|..++.. -|...-...||+ |.-||-+||-. .|+.
T Consensus 275 ~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a 353 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAA 353 (539)
T ss_pred hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhh
Confidence 57999999999998886 445899999999876532 222223345664 77777777722 1221
Q ss_pred ------HHHHHHHHHHhcCchhhHHHHHhhhccCCC
Q 031846 65 ------ELYQKSLEVAAKAPELHMEIHKHGLGQQTM 94 (152)
Q Consensus 65 ------e~YrkaLe~~~kapel~~e~~~~~~~q~~~ 94 (152)
..-..++|...+|.|.++.+-+-++++-.+
T Consensus 354 ~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~L 389 (539)
T PF04184_consen 354 SRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSL 389 (539)
T ss_pred hhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCC
Confidence 122345566677777777777767666553
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.98 E-value=1.5 Score=41.32 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
+.-|..-.+||++||+.++||..|+.-... ...|++..|.+|+++=+..+..+.
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~ 238 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQ 238 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhh
Confidence 456778899999999999999999875432 235666667777766666665543
No 244
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.37 E-value=5.8 Score=37.61 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
-+--..|.++|.++|++++.|.--..=.... +.+++.|...|.++|..+|+++.
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~----------n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI----------NLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhh----------ccchHHHHHHHHHHhhcCCCChH
Confidence 3445679999999999999886554444433 24699999999999999999984
No 245
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.29 E-value=9.3 Score=33.68 Aligned_cols=33 Identities=30% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g 34 (152)
|+||.+.+++||.-++++++++-||=..-..+|
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 566666677777666666666666665555555
No 246
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=81.00 E-value=3.5 Score=35.16 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
.+.....+.+++.|.. .-.+.|||+++.+| ++.||...|++|+.
T Consensus 74 R~~Rea~~~~~~ApTv-qnr~rLa~al~elG-----------r~~EA~~hy~qals 117 (251)
T COG4700 74 RHLREATEELAIAPTV-QNRYRLANALAELG-----------RYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHHHHhhchhH-HHHHHHHHHHHHhh-----------hhhhhHHHHHHHhc
Confidence 3445566677777876 44789999999865 88888888888875
No 247
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=8.7 Score=35.36 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHH-HHHhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSL-EVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~YrkaL-e~~~ka 77 (152)
+++-+...+.+|++||+.--+|+..--++.+.+. -++.+=+...+++|++||.|- .||+-+ +++..+
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~---------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH---------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 3556778899999999999999999999987653 278889999999999999885 577765 555555
No 248
>PRK04841 transcriptional regulator MalT; Provisional
Probab=79.38 E-value=5.5 Score=37.49 Aligned_cols=50 Identities=22% Similarity=0.111 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCh-----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 2 ILDAISKLEEALMVSPNRH-----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~-----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
+++|...++++++..|... .++.++|.++...| ++++|..+|++|+++-.
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G-----------~~~~A~~~~~~al~~~~ 522 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG-----------ELARALAMMQQTEQMAR 522 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHh
Confidence 6789999999998666543 35667788877654 88888888888886533
No 249
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=9.6 Score=34.64 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~d----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
|.+|+..|-+.|+.+-.+.+ .|.|..-|...+ +||..|+.-..+|+.++|.|-
T Consensus 97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-----------~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-----------GNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHhcCcchh
Confidence 67899999999986544433 366777776653 599999999999999999994
No 250
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.88 E-value=8.9 Score=35.59 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yr 68 (152)
|+|||+.|.++|.-||+.-..-.++...|+++ ++|+-+.+..+-=|..-|+.....
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl-----------DYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKL-----------DYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc-----------chhhhHHHHHHHHHHhCCCcHHHH
Confidence 79999999999999999977777888888875 588888888888888899886443
No 251
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.84 E-value=4.5 Score=35.29 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc---cCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA---FLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g---~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kap 78 (152)
+|||.+.|++|=.+=- -..-|-.-|+++.+.. .-..++.++-.-|-+|..||+|+ ||++ +..+.+++.
T Consensus 30 ~eeAadl~~~Aan~yk-laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~---~~~e-----Av~cL~~ai 100 (288)
T KOG1586|consen 30 YEEAAELYERAANMYK-LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV---DPEE-----AVNCLEKAI 100 (288)
T ss_pred hHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc---ChHH-----HHHHHHHHH
Confidence 6788888887742100 0011112233332210 01124444555666666666664 5543 344444555
Q ss_pred hhhHHHHH
Q 031846 79 ELHMEIHK 86 (152)
Q Consensus 79 el~~e~~~ 86 (152)
|++...+|
T Consensus 101 eIyt~~Gr 108 (288)
T KOG1586|consen 101 EIYTDMGR 108 (288)
T ss_pred HHHHhhhH
Confidence 55544444
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.77 E-value=16 Score=29.38 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
++|+...|+..--+.|+..+.-.+-|..+...| +|++|+..|+...+-.|..+.
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-----------~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRG-----------DWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhccCCCChH
Confidence 456666666666799999999999999999764 999999999998777776653
No 253
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=78.47 E-value=5.5 Score=30.32 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
--|+++|.++..+.|..+-.+|.||.=+-+ ..+|+++..--+++|.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s-----------~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGS-----------VKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHhccc
Confidence 358999999999999999999999988754 348999999999988764
No 254
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=78.37 E-value=7.8 Score=27.07 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..+.+|++.|-.. +-.+|...|.+|+++|..++.-+++.
T Consensus 3 l~~A~~l~~~Ave~d~~~-------------------~y~eA~~~Y~~~i~~~~~~~k~e~~~ 46 (75)
T cd02677 3 LEQAAELIRLALEKEEEG-------------------DYEAAFEFYRAGVDLLLKGVQGDSSP 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 578888888888766541 12456678888888888888888654
No 255
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.05 E-value=7.5 Score=34.28 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=39.8
Q ss_pred HHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 10 EEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 10 eeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
-..|..+|-|-+++-.|+.++..+| |...|.+-.|+|+-+|++++-
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~g----d~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQG----DHAQANDLLERALFAFERAFH 75 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999876 889999999999999997764
No 256
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=77.71 E-value=8.1 Score=38.65 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHcCCCcH
Q 031846 45 EYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+|..||++|+..+|+.+
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred hhhhHHHHHHHHHHhhCCcHH
Confidence 499999999999999999843
No 257
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.66 E-value=2.6 Score=27.71 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLG 27 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLG 27 (152)
.|++|....+.+|+++|++..|.--.-
T Consensus 16 ~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 16 EYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp -HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 478999999999999999988764433
No 258
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.37 E-value=19 Score=32.88 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH-----HHHHhc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS-----LEVAAK 76 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrka-----Le~~~k 76 (152)
++.||+.-.+|+..|-.. |- .+|...|.-|++||.-+|+-+-+|+..+.+ +|-...
T Consensus 7 l~kaI~lv~kA~~eD~a~-----nY--------------~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdR 67 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAK-----NY--------------EEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDR 67 (439)
T ss_pred HHHHHHHHHHHhhhcchh-----ch--------------HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH
Confidence 467888888887654322 11 233446777999999999988777755544 355555
Q ss_pred CchhhHHHHH
Q 031846 77 APELHMEIHK 86 (152)
Q Consensus 77 apel~~e~~~ 86 (152)
|-+|-.-|..
T Consensus 68 AEkLK~yL~~ 77 (439)
T KOG0739|consen 68 AEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHh
Confidence 6555444444
No 259
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.88 E-value=13 Score=32.32 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc----HHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN----ELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N----e~YrkaLe~ 73 (152)
++|||...++-++-+|.+...---|=..|+-. +++++|..-.+-+-+++|+. ++||+.+.+
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcva-----------Gdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVA-----------GDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhc-----------chHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 68999999999999999988766555556543 59999999999999999987 579888754
No 260
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=76.79 E-value=13 Score=25.79 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
++.||..+.+|++.|-.. +..+|...|..|+++|..++..+++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g-------------------~y~eA~~lY~~ale~~~~~~k~e~~~ 46 (75)
T cd02684 3 LEKAIALVVQAVKKDQRG-------------------DAAAALSLYCSALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 467888888886554322 12456668888889999999888644
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.56 E-value=7.1 Score=36.08 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHh-------cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846 2 ILDAISKLEEALM-------VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~leeAL~-------idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL 71 (152)
++.|+..|+++.+ .. ++.|.+.||.+|.... ..+.. +.++|+.+|.+|-+++..+..|.-+.
T Consensus 265 ~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~-~~~~~-----d~~~A~~~~~~aA~~g~~~a~~~lg~ 333 (552)
T KOG1550|consen 265 LESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGL-GVEKI-----DYEKALKLYTKAAELGNPDAQYLLGV 333 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCC-CCccc-----cHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 5778888888876 33 6678999999998642 22111 89999999999999999998776665
No 262
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.47 E-value=8.6 Score=33.35 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+.|...-++.|.+||+++..+---|.+|..+| .+.-|++-++..++.-|+.+.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-----------c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-----------CYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-----------CchhhHHHHHHHHHhCCCchH
Confidence 466788888999999999999999999998765 888899999999999997753
No 263
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.36 E-value=18 Score=28.16 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.++.++-.++.++-.| ++..+.+++.++...| +.++|....+++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G-----------~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLG-----------DPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCcH
Confidence 4567788889998888 4588999999998765 8899999999999999933
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=74.91 E-value=5.6 Score=36.86 Aligned_cols=51 Identities=33% Similarity=0.401 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH--------------------HHHHHHHHHhcCchh
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------------LYQKSLEVAAKAPEL 80 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne--------------------~YrkaLe~~~kapel 80 (152)
.++--+|||+..+ ..|++++++||+|+.+--+|. .|.|++-...||.+|
T Consensus 123 q~~l~~~~Ahlgl-----------s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 123 QVSLSMGNAHLGL-----------SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhhHHHHhhhH-----------HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 4555677777754 488888888888888866553 377777666676665
Q ss_pred hH
Q 031846 81 HM 82 (152)
Q Consensus 81 ~~ 82 (152)
-.
T Consensus 192 v~ 193 (518)
T KOG1941|consen 192 VN 193 (518)
T ss_pred HH
Confidence 43
No 265
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.77 E-value=2.3 Score=30.15 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 031846 42 EAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 42 eA~~~~ekA~~~FqkAle 59 (152)
+..+++++|+.||++|++
T Consensus 17 D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 17 EKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 344566777777666664
No 266
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.55 E-value=12 Score=23.80 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 23 ~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
-++|..+|...| +++.|.+..++.+ .+.+.+.-.++-++.
T Consensus 2 kLdLA~ayie~G-----------d~e~Ar~lL~evl-~~~~~~q~~eA~~LL 41 (44)
T TIGR03504 2 KLDLARAYIEMG-----------DLEGARELLEEVI-EEGDEAQRQEARALL 41 (44)
T ss_pred chHHHHHHHHcC-----------ChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 368899999865 9999999999999 467777766666554
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=73.80 E-value=7.2 Score=35.40 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
+++|...+++.++.=|+..--+|.-|..+... ++.++|+++|++|++..
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~-----------g~~~~Ai~~~~~a~~~q 297 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLK-----------GNLEEAIESFERAIESQ 297 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----------cCHHHHHHHHHHhccch
Confidence 46789999999999999877777778888764 59999999999999543
No 268
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.79 E-value=14 Score=31.74 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.|.-++.|++||+.||++...+..+=.+... ..+-++..+-+++++..+|++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~-----------~~~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEK-----------VWDSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------hCCHHHHHHHHHHHHHHCCCCh
Confidence 3567899999999999887766554444433 2366777788999999999874
No 269
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.53 E-value=20 Score=29.41 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHh---cCCCC--hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 2 ILDAISKLEEALM---VSPNR--HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~leeAL~---idP~~--~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
+++||..|.-||. +-..+ -.|..+|-.|-... ...|..+.+..+.+|+++|++|++.+..
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR--~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR--DLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 6889999998883 22222 33666665554332 2346667778999999999999988754
No 270
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.77 E-value=19 Score=26.09 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
.++|+.+.++||+..++..+.+--||-+.+.+. --+.|++++++-.+=++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~--------e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHM--------EWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 478999999999988887776555555444321 13477777777655444
No 271
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.76 E-value=14 Score=33.30 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+.||++..+++|.+||=+...+.-|=+.|..+| |..+++.+|++=.+-.++=+-++=++.
T Consensus 295 ~neAi~l~qr~ltldpL~e~~nk~lm~~la~~g----D~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 295 PNEAIQLHQRALTLDPLSEQDNKGLMASLATLG----DEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc----cchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 679999999999999999999999999998877 667777777777777777666666654
No 272
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=72.70 E-value=3.5 Score=27.16 Aligned_cols=14 Identities=43% Similarity=1.198 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhh
Q 031846 126 VILAVGIVAWVGFA 139 (152)
Q Consensus 126 ~il~~~iv~wv~~a 139 (152)
|+..+||++|+||.
T Consensus 11 vvIil~If~~iGl~ 24 (49)
T PF11044_consen 11 VVIILGIFAWIGLS 24 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34457899999985
No 273
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.60 E-value=9 Score=36.92 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhc
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSH 33 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~nLGnAy~~~ 33 (152)
.|++|+....+.|.+.|+..+|++|-=.++..+
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~ 59 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQL 59 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh
Confidence 378999999999999999999999998887754
No 274
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.57 E-value=3.4 Score=27.51 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=6.7
Q ss_pred HhHHHHHHHHHHHH
Q 031846 45 EYFNKATLYFQQAV 58 (152)
Q Consensus 45 ~~~ekA~~~FqkAl 58 (152)
+++++|+++|.+|+
T Consensus 19 g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 19 GNYEEALELYKEAI 32 (69)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444444444
No 275
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=72.36 E-value=10 Score=34.67 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC-CChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT-PDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~-pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
+..|++.|++|-. -+.++.|.++.-|+.++|=+. -+..+....|.+|.++..||=. -.|..|+..|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~--at~GKy~diLdn 402 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK--ATNGKYQDILDN 402 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH--TT----HHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh--ccccchHHHHhh
Confidence 4678899999874 334444555555554444222 2334577789999999999843 357777777653
No 276
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=71.85 E-value=14 Score=30.87 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
++.|-..|++|++-++-..+.|...+..-...+ .+.+.|...|+++++.-|++.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~----------~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCN----------KDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC----------S-HHHHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHCCCCH
Confidence 578888999998666667777777666633322 366778888888888888885
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.70 E-value=13 Score=32.71 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHh-cCCCCh---HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH------------
Q 031846 2 ILDAISKLEEALM-VSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE------------ 65 (152)
Q Consensus 2 ieeAIs~leeAL~-idP~~~---dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne------------ 65 (152)
+.+|.+..-+.+. ..|+.. ..|..-.++|.. -..||+|..|..||++-.-+|-
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRn-----------Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqa 77 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRN-----------AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQA 77 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHh-----------hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4555555555553 455543 335555666653 2488888888888886655552
Q ss_pred --------HHHHHHHHHhcCchhhHHH
Q 031846 66 --------LYQKSLEVAAKAPELHMEI 84 (152)
Q Consensus 66 --------~YrkaLe~~~kapel~~e~ 84 (152)
..-++..+++||.++|.|-
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 1233345666777777553
No 278
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=71.55 E-value=17 Score=35.97 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 7 SKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 7 s~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+++..||+--..++-.+.-.|..+.+ ...+++|.+.|.|||.++|+|
T Consensus 804 Tks~DALkkce~dphVllaia~lfw~-----------e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPHVLLAIAKLFWS-----------EKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHH-----------HHHHHHHHHHHHHHHccCCcc
Confidence 34555666556666666666666664 347777777777777777777
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.73 E-value=17 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
+++-++|...|++|++.++ .+.-|..++|
T Consensus 172 kg~k~~Ar~ay~kAl~~~~-s~~~~~~lqm 200 (207)
T COG2976 172 KGDKQEARAAYEKALESDA-SPAAREILQM 200 (207)
T ss_pred cCchHHHHHHHHHHHHccC-ChHHHHHHHh
Confidence 4588999999999999984 4555666554
No 280
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.28 E-value=8.1 Score=38.77 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHh-HHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHHHHHhcCc
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCL-GNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEVAAKAP 78 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nL-GnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~YrkaLe~~~kap 78 (152)
+.|.+..-.+++.+-..+.-.||| |.+|-.. |+..+-.+|. ..+.|++.|.||++.+|.-- .|--.|-.+-+..
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDm-F~~S~ytDa~-s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM-FIASNYTDAE-SLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhh-hhccCCcchh-hHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhc
Confidence 456677777777776666667777 9998654 5555555554 78899999999999999543 3556666777778
Q ss_pred hhhHHHHHhhhccCC
Q 031846 79 ELHMEIHKHGLGQQT 93 (152)
Q Consensus 79 el~~e~~~~~~~q~~ 93 (152)
|-..|+++-++--++
T Consensus 338 ens~Elq~IgmkLn~ 352 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNS 352 (1226)
T ss_pred cchHHHHHHHHHHHH
Confidence 888888887754443
No 281
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=70.08 E-value=2.3 Score=30.34 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=13.1
Q ss_pred ccCCCchhhhhhHHHH
Q 031846 113 KKSSDLKYDIFGWVIL 128 (152)
Q Consensus 113 k~~sd~~ydv~gw~il 128 (152)
|--++|-|||++|+|+
T Consensus 35 ky~t~l~~DvL~~~ll 50 (77)
T PF11732_consen 35 KYFTDLGYDVLTFCLL 50 (77)
T ss_pred hhcchhhHHHHHHHHH
Confidence 3457899999999986
No 282
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=69.63 E-value=6.1 Score=35.96 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHH-hHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 1 MILDAISKLEEALMVSPNRHDTLWC-LGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~leeAL~idP~~~dA~~n-LGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
|+.+--..|-++|+.+|.+.|.|.. -.--|.. ..+++.+-..|+++|..||+++.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-----------~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-----------IANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-----------hccHHHHHHHHHhhhccCCCCch
Confidence 3455566789999999999987642 2222232 35999999999999999999984
No 283
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=69.32 E-value=18 Score=32.56 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHH-----------------------------------Hh
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAK-----------------------------------EY 46 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~-----------------------------------~~ 46 (152)
.+.||..|.++.+++|+... =-|+...+...|.-+.+..+.. ++
T Consensus 242 ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d 320 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD 320 (374)
T ss_pred HHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC
Confidence 57899999999999976533 2334333333343333332211 38
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 031846 47 FNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 47 ~ekA~~~FqkAleldP~N 64 (152)
+++|++++++++.++|..
T Consensus 321 ~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 321 YEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHhhcCCcc
Confidence 999999999999998754
No 284
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.72 E-value=27 Score=33.64 Aligned_cols=53 Identities=19% Similarity=0.015 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+|+-.+..+|..||++..++-|||+++...| ..+.-+.+.-+.|+...|+|-
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~----------~~~~~~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDG----------LQFLALADISEIAEWLSPDNA 136 (620)
T ss_pred hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh----------hHHHHHHHHHHHHHhcCcchH
Confidence 36778889999999999999999999986533 355555555566777777774
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.69 E-value=6.3 Score=36.53 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCCChHH------HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 2 ILDAISKLEEALMVSPNRHDT------LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA------~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
++.+.+.||.|+++.-+..|+ +.-||..|+.+ .+++||+-+--||+++--+
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l-----------~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL-----------KDYEKALFFPCKAAELVNS 194 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH-----------HhhhHHhhhhHhHHHHHHh
Confidence 688999999999998888876 55678887753 5999999999999988653
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.16 E-value=24 Score=28.67 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~ 63 (152)
.++|+..|+ ...+..+..+.|+||+.|..-. . ...+.++|..+|++|.+..=.
T Consensus 93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~------g-v~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 93 KTKAADWYR--CAAADGLAEALFNLGLMYANGR------G-VPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCC------C-cccCHHHHHHHHHHHHHcCCh
Confidence 356778888 4457788899999999997421 1 134889999999999999443
No 287
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.68 E-value=4.7 Score=28.41 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHHHHHcC
Q 031846 43 AKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 43 A~~~~ekA~~~FqkAleld 61 (152)
..++|++|+.||++|++.=
T Consensus 18 ~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HccCHHHHHHHHHHHHHHH
Confidence 3457777777777777654
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.41 E-value=27 Score=33.06 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH----HHHHHHHHhc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAK 76 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~----YrkaLe~~~k 76 (152)
|.+++.+-.=..+++| ...+|--||..+... .+|+||.+||+. +-|+++. -+|++-+.-|
T Consensus 478 y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~-----------k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 478 YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN-----------KRYQEAWEYLQK---LPPNERMRDSKVQKALALCQK 541 (549)
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH-----------hhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHH
Confidence 4455555566779999 899999999999864 499999999997 6664443 4566655543
No 289
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.28 E-value=11 Score=33.65 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHH----HHHHHHHhcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY----QKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Y----rkaLe~~~ka 77 (152)
+-+|...|.+.++-||.++.|-.|...++..+ ++..+|++-.+.+++++|.+.+- -..-.|++-+
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-----------g~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYL-----------GKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHH-----------HHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Confidence 45788899999999999999999999888765 48999999999999999976432 2333556666
Q ss_pred chhhHHHHHhh
Q 031846 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pel~~e~~~~~ 88 (152)
..-|+..-+.+
T Consensus 337 Ys~~~~~k~~l 347 (366)
T KOG2796|consen 337 YSRSMQKKQAL 347 (366)
T ss_pred hhhhhhHHHHH
Confidence 66666655555
No 290
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.23 E-value=13 Score=19.60 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHh
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCL 26 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nL 26 (152)
++.|.+.|+++|...|...+.|.+.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 5789999999999999777766554
No 291
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.99 E-value=5 Score=28.08 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHHHHH
Q 031846 45 EYFNKATLYFQQAVD 59 (152)
Q Consensus 45 ~~~ekA~~~FqkAle 59 (152)
++|++|+.||++||+
T Consensus 20 g~y~eAl~~Y~~aie 34 (77)
T cd02683 20 GRFQEALVCYQEGID 34 (77)
T ss_pred ccHHHHHHHHHHHHH
Confidence 455555555555553
No 292
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=66.65 E-value=5.8 Score=26.72 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhhHH
Q 031846 46 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 83 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~~e 83 (152)
.+++|+++..+|++.|- ...|..+++++.++.|.-+.
T Consensus 4 ~~~~A~~li~~Av~~d~-~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKALKADE-AGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 56778888888888776 34566666666666655544
No 293
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.57 E-value=11 Score=36.48 Aligned_cols=43 Identities=30% Similarity=0.159 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk 56 (152)
.+||.+.|++.++.||++.+++.+|=.||.++ +.++|..+=.+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~------------d~eka~~l~k~ 516 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARL------------DPEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc------------CHHHHHHHhhc
Confidence 47999999999999999999999999999863 56666655443
No 294
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.10 E-value=25 Score=32.78 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCCh-HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc-H-------------H
Q 031846 2 ILDAISKLEEALMVSPNRH-DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN-E-------------L 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~-dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N-e-------------~ 66 (152)
|+.||+.++-.+.++.+-. +.---+|-.+..+ ++|++|+.-|+-+.+.+--+ + +
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhL-----------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-----------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 6789999999997766554 2222244444543 59999999998877644323 2 5
Q ss_pred HHHHHHHHhcCchh
Q 031846 67 YQKSLEVAAKAPEL 80 (152)
Q Consensus 67 YrkaLe~~~kapel 80 (152)
|..+..+..|+|..
T Consensus 107 Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT 120 (557)
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888888753
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.74 E-value=22 Score=28.85 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQK 69 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~Yrk 69 (152)
..|+..|.+|-... +.++.++||..|.. |+- ...++++|..+|++|-+.......|.-
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-G~G------v~~d~~~A~~wy~~Aa~~g~~~a~~~~ 229 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEK-GLG------VPRDLKKAFRWYKKAAEQGDGAACYNL 229 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHc-CCC------CCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36888888888776 88999999988864 211 245999999999999999883334433
No 296
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.66 E-value=40 Score=23.97 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP 62 (152)
++.|....++||..|..- +.++|...|++|+...++++.+.=
T Consensus 5 ~~~A~~~I~kaL~~dE~g-------------------~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 5 YKQAFEEISKALRADEWG-------------------DKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHHHhhhhhcC-------------------CHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455666666666655431 234555667777777777776654
No 297
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.59 E-value=17 Score=33.24 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl 58 (152)
+.+|.+.|+.||+.-|.- ..+--||-+|..+| +.++|.+++++++
T Consensus 344 w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g-----------~~~~A~~~r~e~L 388 (400)
T COG3071 344 WGKASEALEAALKLRPSA-SDYAELADALDQLG-----------EPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcC-----------ChHHHHHHHHHHH
Confidence 568999999999999987 45677899998766 7788888888877
No 298
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.04 E-value=7.1 Score=27.58 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846 46 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel 80 (152)
++++|+..+++|++.|- ...|.++++++..|.|+
T Consensus 2 ~l~kai~Lv~~A~~eD~-~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDEDE-KGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhhH-hhhHHHHHHHHHHHHHH
Confidence 45677778888877665 23444454444444443
No 299
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=64.98 E-value=6.6 Score=26.85 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhhH
Q 031846 47 FNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM 82 (152)
Q Consensus 47 ~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~~ 82 (152)
+++|+.++++|++.|- ...|..+++++..+.++-+
T Consensus 3 ~~~A~~l~~~Av~~D~-~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDN-AGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence 4566666666666654 3334444444444444433
No 300
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.96 E-value=33 Score=30.32 Aligned_cols=61 Identities=21% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~ 73 (152)
+++|--.|++.-+.-|-....+..+.+++.. .++|++|....+.||+-+++++...-++=+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-----------~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-----------LGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHH-----------hcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3455555555554333333444444444433 359999999999999999988766555533
No 301
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=23 Score=31.33 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH--HHHHH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNE--LYQKS 70 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne--~Yrka 70 (152)
.++|-++++.--..|..+|.|. .||++
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRa 271 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRA 271 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 5799999999999999999996 45544
No 302
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.76 E-value=39 Score=29.96 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCC---cHHHHHHHHHH
Q 031846 6 ISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS---NELYQKSLEVA 74 (152)
Q Consensus 6 Is~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~---Ne~YrkaLe~~ 74 (152)
+..+++.+.-||+++++-+-|+..|.-. ++.|.|++.+-.-|..|=. ++.=+..++++
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~-----------g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLV-----------GRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 3568889999999999999999999754 5999999999998888763 33344444544
No 303
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.26 E-value=20 Score=30.86 Aligned_cols=43 Identities=26% Similarity=0.147 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ 55 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq 55 (152)
+-+|+..+|.++..+|.+++.-.-|-..|..+| -.+.|.+.|+
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG-----------~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG-----------AGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHH
Confidence 457999999999999999999999999999876 5555555554
No 304
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=63.96 E-value=42 Score=28.76 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+.||...|+++|. -|=-+|+---||.|.... +.+++..|..-.++-.+-+|.-
T Consensus 105 ~~EA~~hy~qals-G~fA~d~a~lLglA~Aqf---------a~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 105 YHEAVPHYQQALS-GIFAHDAAMLLGLAQAQF---------AIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred hhhhHHHHHHHhc-cccCCCHHHHHHHHHHHH---------hhccHHHHHHHHHHHhhcCCcc
Confidence 5689999999994 333344444455554432 3468889999999999888865
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.92 E-value=36 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+.+++++..|++|++++|+++.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHH
Confidence 36889999999999999998863
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.77 E-value=15 Score=32.36 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAH 30 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy 30 (152)
++.|..+|.+|.+--.++ .++|.-.-+|
T Consensus 47 feKakdcLlkA~~~yEnn-rslfhAAKay 74 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENN-RSLFHAAKAY 74 (308)
T ss_pred HHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 456666666666444333 3444444444
No 307
>PRK10941 hypothetical protein; Provisional
Probab=62.22 E-value=22 Score=30.36 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=26.1
Q ss_pred HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 23 ~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
+-||=.+|.. .+++++|+.|-++.+.++|+++
T Consensus 184 l~nLK~~~~~-----------~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 184 LDTLKAALME-----------EKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HHHHHHHHHH-----------cCcHHHHHHHHHHHHHhCCCCH
Confidence 4456666664 3599999999999999999986
No 308
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.17 E-value=9.2 Score=26.70 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhhHH
Q 031846 46 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 83 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~~e 83 (152)
..++|+..+++|++.|- +..|..+++++..+.++-+.
T Consensus 2 ~l~~A~~l~~~Ave~d~-~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 2 YLEQAAELIRLALEKEE-EGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 35677777777777765 35666666666666655443
No 309
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.09 E-value=74 Score=28.35 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHH-HHHHhcCc
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKS-LEVAAKAP 78 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne---~Yrka-Le~~~kap 78 (152)
+.|....+.+|.+||-+-..|-..=+++..++ -+..+=+++..+.++.+|.|- ++|+. +|+.. .|
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~----------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~ 128 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLM----------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DP 128 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Cc
Confidence 35778888999999999888877777777654 478899999999999999996 35554 57766 66
Q ss_pred h-hhHHHHHhhhccC
Q 031846 79 E-LHMEIHKHGLGQQ 92 (152)
Q Consensus 79 e-l~~e~~~~~~~q~ 92 (152)
+ --+||-+-++.+-
T Consensus 129 s~rELef~~~~l~~D 143 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDD 143 (318)
T ss_pred ccchHHHHHHHHhcc
Confidence 6 6677777777544
No 310
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.70 E-value=19 Score=33.30 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk 56 (152)
|++|...-++||+|||.+.-|.--+.-++.+.| +++++.++-++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~-----------r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNG-----------RHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcc-----------hhhhHHHHHHh
Confidence 689999999999999999999888888887644 55555555444
No 311
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.40 E-value=42 Score=33.19 Aligned_cols=54 Identities=15% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~------~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
|+.++..|+..|+.-|.+ +...-+|...|.. .++.|+|.++++.|-+-||.|.+
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-----------L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-----------LEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHhhccccHH
Confidence 678999999999765543 2334455666654 46999999999999999999974
No 312
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.03 E-value=39 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g 34 (152)
+.+|...|..++..+|++.++...|+.+|...|
T Consensus 150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g 182 (304)
T COG3118 150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAG 182 (304)
T ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC
Confidence 567888999999999999999999999998765
No 313
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.65 E-value=46 Score=30.89 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~ 81 (152)
++-|+.-..||+|||+-+.||..|..--. .-.-+|...|++||+-- ...||++..+...+++..
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa-------------~Ti~~AE~l~k~ALka~--e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEA-------------TTIVDAERLFKQALKAG--ETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhh-------------hhHHHHHHHHHHHHHHH--HHHHhhHHHHhhhccchh
Confidence 34567778999999999999987765432 24566777888887653 456777777766665443
No 314
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=56.29 E-value=11 Score=34.47 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.++.|+|...|+.|+.++|+|+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~ 151 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQ 151 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHH
Confidence 36999999999999999999973
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.67 E-value=48 Score=30.00 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~d----A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.++|++.|+++|++.+++.+ |+-.+=-++..++ .-.+..+.|.+-+.|.+-||..|=..
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~----~~~eMm~~Y~qlLTYIkSAVTrNySE 105 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG----NYKEMMERYKQLLTYIKSAVTRNYSE 105 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHHHHHHhccccH
Confidence 57999999999999999865 3444444444443 23566678888888888888877543
No 316
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=53.89 E-value=20 Score=27.03 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHHHHHc--CCCcHHHHHHH-HHHhcCchhhHHHHHhhhccCC
Q 031846 45 EYFNKATLYFQQAVDE--EPSNELYQKSL-EVAAKAPELHMEIHKHGLGQQT 93 (152)
Q Consensus 45 ~~~ekA~~~FqkAlel--dP~Ne~YrkaL-e~~~kapel~~e~~~~~~~q~~ 93 (152)
++|.+|+.-+++|++. +|.++.++.++ .-++.+.|+--.+-|..+..++
T Consensus 4 ~~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t~ElaWK~lK~~L~~~G 55 (124)
T PF08780_consen 4 ENFKKALSRLEEALEKYEDPLSELERDGVIQRFEFTFELAWKTLKDYLEYEG 55 (124)
T ss_dssp HHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999 89999888776 7788888888888887666654
No 317
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=53.88 E-value=1e+02 Score=28.09 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHhcCchhh
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN-ELYQKSLEVAAKAPELH 81 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N-e~YrkaLe~~~kapel~ 81 (152)
..++..+++=..-.=++...||-+-..|+.. ++...+-+.|++--|.+--+. ....++||+..
T Consensus 161 ~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~----------le~qk~tv~~Leaev~~~K~~Y~~slrnLE~IS------ 224 (426)
T KOG2008|consen 161 MGRMRQLEKKNKRAIKKSRPYFELKAKYTVQ----------LEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMIS------ 224 (426)
T ss_pred HHHHHHHHHHhHHHHhhcchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH------
Confidence 4556666666666667788899998888763 567778888888877776543 34445555543
Q ss_pred HHHHHhhhccCCCCCCCCCCC
Q 031846 82 MEIHKHGLGQQTMGPSTGPSS 102 (152)
Q Consensus 82 ~e~~~~~~~q~~~~~~~~~~~ 102 (152)
.+||.-..+|-.++.++.|-+
T Consensus 225 d~IHeeRssqs~~apssd~e~ 245 (426)
T KOG2008|consen 225 DEIHEERSSQSAMAPSSDGEG 245 (426)
T ss_pred HHHHHhhhhhhccCCCccccc
Confidence 678887777776664444433
No 318
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=53.51 E-value=2.4 Score=33.26 Aligned_cols=24 Identities=46% Similarity=0.726 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCC
Q 031846 128 LAVGIVAWVGFAKSHMPTPPPTPP 151 (152)
Q Consensus 128 l~~~iv~wv~~a~~~~p~~~~~~~ 151 (152)
|++|.|+..-+-++..|.|+|+||
T Consensus 102 LagGavAfsivRRs~~~ePsp~pP 125 (133)
T PF10814_consen 102 LAGGAVAFSIVRRSSRPEPSPLPP 125 (133)
T ss_pred HhccceEEEEeecCCCCCCCCCCC
Confidence 444444444455666677777766
No 319
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=53.37 E-value=55 Score=28.36 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-----CCC-hH-----HHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-----TPD-QD-----EAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l-----~pd-~~-----eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
-.+.++.=++-.|++.-|+..+|+.+...+.. +.+ .+ -+....++|..+|.||++++|.--
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 44556666789999999999999988765321 000 00 133589999999999999999875
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=53.20 E-value=21 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=28.2
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
-+++-.||.-|.+.| ++++|+++|.++.+-.-..
T Consensus 36 r~~~~~l~~~~~~~G-----------d~~~A~k~y~~~~~~~~~~ 69 (177)
T PF10602_consen 36 RMALEDLADHYCKIG-----------DLEEALKAYSRARDYCTSP 69 (177)
T ss_pred HHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhhhcCCH
Confidence 468889999999865 9999999999988876544
No 321
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=52.47 E-value=82 Score=22.80 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH---------HHHHcCCCcHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ---------QAVDEEPSNELYQKSLE 72 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq---------kAleldP~Ne~YrkaLe 72 (152)
.++.+..|+..+..++.+.+.+.-|...|.+. +.++.+++++ +|+++-.++..|+.+..
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~------------~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY------------DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH------------CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHH
Confidence 56789999999999988877777788888753 3344444444 24444444445555555
Q ss_pred HHhcC
Q 031846 73 VAAKA 77 (152)
Q Consensus 73 ~~~ka 77 (152)
+..+.
T Consensus 91 l~~k~ 95 (140)
T smart00299 91 LYKKD 95 (140)
T ss_pred HHHhh
Confidence 55554
No 322
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.50 E-value=15 Score=24.71 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchh
Q 031846 48 NKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 48 ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel 80 (152)
++|+.+.++|++.|-. ..|..+++++..+.|+
T Consensus 4 ~~a~~l~~~Av~~D~~-g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDED-GNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 4455555555554432 3344444444444433
No 323
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.44 E-value=36 Score=33.54 Aligned_cols=72 Identities=26% Similarity=0.304 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCChHH-HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH-----------------
Q 031846 4 DAISKLEEALMVSPNRHDT-LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----------------- 65 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA-~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne----------------- 65 (152)
.|+.+|++|+.+.|...+. +.||.+++...| ..-.|.....++|.++-..+
T Consensus 625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~-----------~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYG-----------LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred HHHHHHHHHhccChhhhcccHHHHHHHHHHhh-----------hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 5899999999999986654 899999998765 45568889999999985543
Q ss_pred ----HHHHHHHHHhcCchhhHHHHH
Q 031846 66 ----LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 ----~YrkaLe~~~kapel~~e~~~ 86 (152)
..|.+++..++-|+....|-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 467777777887777655544
No 324
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=51.29 E-value=15 Score=24.62 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk 56 (152)
|.|+.. +.+. .....=||+|||.-.. +-.+.+ ...++.+||..|.++
T Consensus 14 e~id~~-~~~~---~~~~~~f~~gnaiKY~-~R~~~K-~~~eDl~KA~~Yl~r 60 (60)
T PF11753_consen 14 ECIDFI-EQFT---EEQFLGFCLGNAIKYL-WRAGKK-NGIEDLKKAKWYLDR 60 (60)
T ss_pred cHHHHH-HHhc---chhhhhHHHHHHHHHH-HHHccc-CcHHHHHHHHHHHcC
Confidence 345555 4444 3334567899997322 123344 447789999888653
No 325
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=48.96 E-value=41 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHHHHcCCCcHH-HHHHH-HHHhcCchhhHHHHHhhhccCC
Q 031846 45 EYFNKATLYFQQAVDEEPSNEL-YQKSL-EVAAKAPELHMEIHKHGLGQQT 93 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~-YrkaL-e~~~kapel~~e~~~~~~~q~~ 93 (152)
++|++|+.-+++|++.+|.|+. ++.++ .-++-+.||--.+-|-.+..++
T Consensus 3 ~nf~kAl~~L~~a~~~~~~~~~~~~~g~IqrFE~t~ELaWK~lK~~L~~~G 53 (123)
T TIGR01987 3 ESFEQALMQLSDANWFDLTNDITIIDGAIQKFEFTFELAWKLMKRYLAQEG 53 (123)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999997 77775 6667777766555555454443
No 326
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=48.91 E-value=16 Score=32.06 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=23.4
Q ss_pred ChHHHHHhHHHHHhcccCCCC-----hHHHHHhHHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd-----~~eA~~~~ekA~~~FqkAl 58 (152)
+...+||+|-.|+.+|..... ..+|-..|..|.-||+-.-
T Consensus 110 ka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~ 154 (353)
T cd09246 110 KAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLR 154 (353)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999888754221 1223345555555555443
No 327
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=48.72 E-value=14 Score=32.81 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=23.5
Q ss_pred ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkA 57 (152)
+...+||+|-.|+..|...... ..+..++|..+||+|
T Consensus 105 kasVLFNigAl~Sq~aa~~~r~--~~eglK~A~~~Fq~A 141 (350)
T cd09244 105 KASVLFNIGALYTQIGAKQDRT--TEEGIEAAVDAFQRA 141 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHH
Confidence 4568999999999887432211 123456666666664
No 328
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=48.05 E-value=6 Score=32.52 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 031846 123 FGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 123 ~gw~il~~~iv~wv~~a~ 140 (152)
.||.||++.|++|+.+-|
T Consensus 36 yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQK 53 (190)
T ss_dssp ------------------
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 499999999999886544
No 329
>PF15100 TMEM187: TMEM187 protein family
Probab=48.04 E-value=16 Score=31.44 Aligned_cols=26 Identities=31% Similarity=0.699 Sum_probs=23.9
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhh
Q 031846 115 SSDLKYDIFGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 115 ~sd~~ydv~gw~il~~~iv~wv~~a~ 140 (152)
..++.+||++|..|+-|.|=|+=++-
T Consensus 77 ~a~Y~k~vfa~mAl~YgpVQwlri~T 102 (242)
T PF15100_consen 77 RARYLKDVFAWMALHYGPVQWLRIAT 102 (242)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67899999999999999999998874
No 330
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=47.18 E-value=41 Score=26.41 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
+++|+..+..-+.+++++-+.+.++|..+-. .|.++...+++-+.+-.+..++
T Consensus 89 w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~-----~D~~~Q~k~i~l~~~~L~~~~~ 141 (170)
T PF09548_consen 89 WEEAVEKLLKESALKKEDKEILLELGKSLGY-----SDREMQEKHIELYLEQLEQQLE 141 (170)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778899999999999998753 4666666666666666655443
No 331
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=46.89 E-value=20 Score=30.86 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=23.5
Q ss_pred hHHHHHhHHHHHhcccCCC-----ChHHHHHhHHHHHHHHHHHHHc
Q 031846 20 HDTLWCLGNAHTSHAFLTP-----DQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~p-----d~~eA~~~~ekA~~~FqkAlel 60 (152)
.-.+||+|.+|+.+|...+ +..+|-..|.+|..+|+-.-+.
T Consensus 107 a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~ 152 (377)
T PF03097_consen 107 ACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLREN 152 (377)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999988875441 1122333555555555544444
No 332
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.41 E-value=21 Score=24.72 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHcCC
Q 031846 47 FNKATLYFQQAVDEEP 62 (152)
Q Consensus 47 ~ekA~~~FqkAleldP 62 (152)
+++|+..+++|++.|-
T Consensus 3 l~~Ai~lv~~Av~~D~ 18 (75)
T cd02684 3 LEKAIALVVQAVKKDQ 18 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 333
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=46.03 E-value=5.1 Score=23.75 Aligned_cols=24 Identities=21% Similarity=0.699 Sum_probs=16.9
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCCC
Q 031846 122 IFGWVILAVG-IVAWVGFAKSHMPT 145 (152)
Q Consensus 122 v~gw~il~~~-iv~wv~~a~~~~p~ 145 (152)
|.-|.=++=. .|+|+-+|++.+|+
T Consensus 3 vaaWlPfaraaAIGW~p~a~~~lP~ 27 (28)
T PF11601_consen 3 VAAWLPFARAAAIGWLPLAQQPLPP 27 (28)
T ss_dssp CHTTHHHHHHHHTTTSSTTSSSSSS
T ss_pred chhhhhHHHHHhhcceeeccCCCCC
Confidence 4557656544 78888888888884
No 334
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=45.76 E-value=16 Score=27.72 Aligned_cols=16 Identities=31% Similarity=1.039 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 031846 121 DIFGWVILAVGIVAWVGFA 139 (152)
Q Consensus 121 dv~gw~il~~~iv~wv~~a 139 (152)
-.+-|++|+ +.|+||+
T Consensus 83 ~~LPW~LL~---lSW~gF~ 98 (103)
T PF11169_consen 83 SWLPWGLLV---LSWIGFI 98 (103)
T ss_pred cchhHHHHH---HHHHHHH
Confidence 467899886 6788886
No 335
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=45.60 E-value=28 Score=27.00 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=18.4
Q ss_pred CchhhhhhHHHHHHHHHHHH-HhhhcCC-CCCCC
Q 031846 117 DLKYDIFGWVILAVGIVAWV-GFAKSHM-PTPPP 148 (152)
Q Consensus 117 d~~ydv~gw~il~~~iv~wv-~~a~~~~-p~~~~ 148 (152)
|++. |+|.|++++||-+|+ ++.|..+ ||+|.
T Consensus 73 ewk~-v~~~~~~~i~~s~~~~~~~r~~~~~~~P~ 105 (136)
T cd00922 73 EWKT-VFGGVLAFIGITGVIFGLQRAFVYGPKPH 105 (136)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 5554 677788888876664 3444455 44443
No 336
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=45.46 E-value=16 Score=27.69 Aligned_cols=12 Identities=42% Similarity=1.113 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 031846 126 VILAVGIVAWVG 137 (152)
Q Consensus 126 ~il~~~iv~wv~ 137 (152)
++|.+|+|+|++
T Consensus 40 ~~lv~glvgW~~ 51 (104)
T PF11460_consen 40 ALLVLGLVGWVS 51 (104)
T ss_pred HHHHHHHHHHHh
Confidence 588899999986
No 337
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=45.33 E-value=16 Score=34.97 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHH
Q 031846 121 DIFGWVILAVGIVAWV 136 (152)
Q Consensus 121 dv~gw~il~~~iv~wv 136 (152)
-|+||||.+|++|+-|
T Consensus 319 KIlG~vitaVsvvAAv 334 (593)
T PRK15374 319 KVLGALLTIVSVVAAV 334 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999999988854
No 338
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=45.25 E-value=86 Score=27.83 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=40.7
Q ss_pred HHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHhcCchh
Q 031846 22 TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN-----ELYQKSLEVAAKAPEL 80 (152)
Q Consensus 22 A~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N-----e~YrkaLe~~~kapel 80 (152)
+|..+|..+..++.-..+...|.+.|-+|..||.-|----.++ ..++++.+++.++..+
T Consensus 100 ~W~~~a~~~~~~A~~~~~~~~A~~~~lrAa~yy~~A~~~~~~~~~~~~~~~~~~~~~f~~a~~~ 163 (414)
T PRK05077 100 EWAKQAMEWQQKACAEEDPEEAGRHWLHAANLYSIAAYPHLKGDELAEQAQVLANRAYEEAAKR 163 (414)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHHhh
Confidence 8888999887666444466778889999999999887432222 2455566666666554
No 339
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.79 E-value=66 Score=28.50 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHh-cCCCCh-HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 2 ILDAISKLEEALM-VSPNRH-DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~leeAL~-idP~~~-dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
|..|...|++.+. +.++.. +.+..|..+|...-. -+|++|.++|++.+..
T Consensus 147 y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~---------fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 147 YGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDR---------FDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHH
Confidence 6789999999887 465553 578888888865532 2889999999987765
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.57 E-value=58 Score=23.55 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHhcCchhhHH
Q 031846 45 EYFNKATLYFQQAVDEEPSNEL-----------------YQKSLEVAAKAPELHME 83 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~-----------------YrkaLe~~~kapel~~e 83 (152)
.+.++|+.++++||+.-++.+. ||..|+.+-.+.|+=.|
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e 75 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE 75 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999873 77777666655554433
No 341
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=44.14 E-value=14 Score=22.12 Aligned_cols=20 Identities=30% Similarity=0.797 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHH--HHhhhc
Q 031846 121 DIFGWVILAVGIVAW--VGFAKS 141 (152)
Q Consensus 121 dv~gw~il~~~iv~w--v~~a~~ 141 (152)
-+..|+ |+.=+++| ||++|.
T Consensus 5 ~lgcWi-lvLfvatwsdvglcKK 26 (29)
T PF11587_consen 5 HLGCWI-LVLFVATWSDVGLCKK 26 (29)
T ss_dssp TTTTHH-HHHHHHHHHHHTTSSS
T ss_pred cccHHH-HHHHHHHHhhhccccC
Confidence 355674 45567788 999996
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.01 E-value=41 Score=31.12 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
++.|...|.+|-... ..+.||||..|.. |.- .+. +..|.++|++|.+.+...
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~-g~g------~~~-~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEH-GEG------IKV-LHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhc-CcC------cch-hHHHHHHHHHHHhcCchh
Confidence 567899999999887 9999999999864 321 245 889999999999888764
No 343
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=43.98 E-value=20 Score=31.70 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=23.3
Q ss_pred ChHHHHHhHHHHHhcccCCCC-----hHHHHHhHHHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd-----~~eA~~~~ekA~~~FqkAle 59 (152)
+...+||+|-.|+.+|..... ..+|-..|..|.-||+-.-+
T Consensus 113 ka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e 158 (361)
T cd09239 113 EASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLRE 158 (361)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999887743211 11133455555555554433
No 344
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=43.48 E-value=1.3e+02 Score=32.42 Aligned_cols=31 Identities=26% Similarity=0.158 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHH-hcCCCChH-------HHHHhHHHHH
Q 031846 1 MILDAISKLEEAL-MVSPNRHD-------TLWCLGNAHT 31 (152)
Q Consensus 1 mieeAIs~leeAL-~idP~~~d-------A~~nLGnAy~ 31 (152)
.+|.|.+.++||| .||+.-.+ ||.||=|+|-
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG 1511 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG 1511 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC
Confidence 3789999999999 59988665 5555555553
No 345
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=43.41 E-value=40 Score=30.40 Aligned_cols=70 Identities=23% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHh-cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhh
Q 031846 3 LDAISKLEEALM-VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 3 eeAIs~leeAL~-idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~ 81 (152)
+|++..++++.+ |...-+.|+ ||..|+-+. ++...++.+ -.++....++++.++.+...|.+
T Consensus 74 ~e~~~~le~a~~~l~~tRPTAv-NLfwal~rm----------~~~~~~~~~------v~~~~~~~~~eA~~i~~ED~e~n 136 (346)
T COG0182 74 EEFIEALEKAAETLKSTRPTAV-NLFWALDRM----------LNAAKEAIE------VKEPKESILQEAEEIAEEDLEAN 136 (346)
T ss_pred HHHHHHHHHHHHHHhhcCchhH-HHHHHHHHH----------HHHHhhccc------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 567777777774 444444443 466665431 111122221 23455678999999999999999
Q ss_pred HHHHHhhh
Q 031846 82 MEIHKHGL 89 (152)
Q Consensus 82 ~e~~~~~~ 89 (152)
..+++.++
T Consensus 137 ~~iG~~G~ 144 (346)
T COG0182 137 RAIGENGA 144 (346)
T ss_pred HHHHHHHH
Confidence 99999874
No 346
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.32 E-value=49 Score=17.33 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=19.6
Q ss_pred HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 23 ~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
|..|=++|.+. +++++|.+.|++-.+.
T Consensus 3 y~~li~~~~~~-----------~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKM-----------GQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHcc-----------chHHHHHHHHHHHhHC
Confidence 44555667664 4999999999986653
No 347
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=42.68 E-value=19 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=21.2
Q ss_pred ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkA 57 (152)
+...+||+|..|+.++...... -.+..++|..+||+|
T Consensus 106 ka~VLfNiaal~s~~A~~~~~~--~~~~~K~A~~~fq~A 142 (348)
T cd09242 106 KASVLFNIGALLSQLAAEKYRE--DEDDLKEAITNLQQA 142 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHH
Confidence 3457899999998876432200 123445555555554
No 348
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.53 E-value=46 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=24.1
Q ss_pred HhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 25 CLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 25 nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
.||..+... +++++|..||=+||..-|+-.
T Consensus 68 ~lGE~L~~~-----------G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQ-----------GDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHT-----------T-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhC-----------CCHHHHHHHHHHHHHhCCCHH
Confidence 578888764 489999999999999999753
No 349
>KOG4449 consensus Translocase of outer mitochondrial membrane complex, subunit TOM7 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.49 E-value=19 Score=24.27 Aligned_cols=19 Identities=42% Similarity=0.996 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCC
Q 031846 123 FGWVILAVGIVAWVGFAKSHMPT 145 (152)
Q Consensus 123 ~gw~il~~~iv~wv~~a~~~~p~ 145 (152)
-|||=| |.|+|||+..-||
T Consensus 24 ~G~IP~----VlyLG~a~~a~~P 42 (53)
T KOG4449|consen 24 YGWIPL----VLYLGFAFGARPP 42 (53)
T ss_pred echhhH----HHHhhhhhcCCCC
Confidence 388766 7799999976663
No 350
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=41.76 E-value=24 Score=29.81 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=16.0
Q ss_pred CchhhhhhHHHHHHHHHHHH
Q 031846 117 DLKYDIFGWVILAVGIVAWV 136 (152)
Q Consensus 117 d~~ydv~gw~il~~~iv~wv 136 (152)
-++==|||||+.++.||+=+
T Consensus 56 Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 56 GIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 44556999999999988766
No 351
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=41.03 E-value=52 Score=27.35 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHh----cCCCC----hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 2 ILDAISKLEEALM----VSPNR----HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~leeAL~----idP~~----~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
++-|...|.|+=. ++|+. ++.+||.|....+.+ .++++|...+++|+++
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~----------~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK----------DKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC----------CChHHHHHHHHHHHHH
Confidence 4567777776654 34543 455788888877532 2888888888888888
No 352
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=40.66 E-value=18 Score=32.82 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=22.6
Q ss_pred ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkA 57 (152)
+...+||||-.|+..|...+.. ..+-.+.|..+||+|
T Consensus 105 KasVLFNigAL~Sqlaa~~~r~--t~eGlK~A~~~FQ~A 141 (384)
T cd09248 105 KGSVLFNIGALHTQIGARQDRS--CTEGTRRAIDAFQRA 141 (384)
T ss_pred HHHHHHhHHHHHHHHHhhccCC--ChHHHHHHHHHHHHH
Confidence 3568999999999887432211 123455566666554
No 353
>PHA01080 hypothetical protein
Probab=40.34 E-value=27 Score=25.30 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHH-HHhhhc
Q 031846 122 IFGWVILAVGIVAW-VGFAKS 141 (152)
Q Consensus 122 v~gw~il~~~iv~w-v~~a~~ 141 (152)
+||||+....+-+. |.|||.
T Consensus 56 gF~~V~~lgyls~YaVkiakk 76 (80)
T PHA01080 56 GFMAVFALGYLSTYAVYIGKK 76 (80)
T ss_pred hHHHHHHhhhhHHHHHHHHHH
Confidence 58999887777755 888885
No 354
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=39.34 E-value=94 Score=24.15 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhccc
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAF 35 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~ 35 (152)
++-|.+.++.++..||++.+|..-+..+|..+|.
T Consensus 86 ~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 86 YQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999998774
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.18 E-value=1.6e+02 Score=23.73 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaL 71 (152)
++|+...++..=-+.|+..+.-.+-|..+...| ++++|+..|....+-.| +.-|-|+|
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-----------~w~eA~rvlr~l~~~~~-~~p~~kAL 83 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARG-----------NYDEAARILRELLSSAG-APPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcC-----------CHHHHHHHHHhhhccCC-CchHHHHH
Confidence 345555555555699999999999999998764 99999999999766555 44444443
No 356
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=39.11 E-value=72 Score=17.83 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHT 31 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~ 31 (152)
+.++.-.++|..||++..+|...=-++.
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 3467788999999999999887655543
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=38.72 E-value=93 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHcCCCcH-HHHHHHHHH
Q 031846 45 EYFNKATLYFQQAVDEEPSNE-LYQKSLEVA 74 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne-~YrkaLe~~ 74 (152)
++++.+++.+++-++++|-|| .|+..++.+
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y 197 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAY 197 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 589999999999999999886 455555444
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.32 E-value=91 Score=29.01 Aligned_cols=41 Identities=22% Similarity=0.117 Sum_probs=32.3
Q ss_pred ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH--------HHHHcCCCcHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--------QAVDEEPSNELYQKS 70 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq--------kAleldP~Ne~Yrka 70 (152)
.+-.+|.+|.-+... ++.+.|..+|+ .+....+.+|+|--+
T Consensus 403 ~~~~~yL~gl~~q~~-----------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 403 YPLLHYLLGLYYQST-----------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred hHHHHHHHHHHHHHc-----------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 366788888888754 59999999998 788888899865443
No 359
>PLN03184 chloroplast Hsp70; Provisional
Probab=38.28 E-value=1.4e+02 Score=28.58 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 41 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 41 ~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
.+-++.++++++-+++.|+-+ +.+.+++.++
T Consensus 591 ~eer~~l~~~l~~~e~wL~~~-d~~~ik~~~~ 621 (673)
T PLN03184 591 ADVKEKVEAKLKELKDAIASG-STQKMKDAMA 621 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 344578899999999999876 3345555443
No 360
>PF13041 PPR_2: PPR repeat family
Probab=38.17 E-value=91 Score=18.77 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE--EPSNELYQKSLEVA 74 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel--dP~Ne~YrkaLe~~ 74 (152)
-.|..|=.+|.+. +++++|.+.|++-.+. .|+.-.|.-.+...
T Consensus 4 ~~yn~li~~~~~~-----------~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKA-----------GKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHC-----------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555666664 4999999999998874 67777777766543
No 361
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=37.58 E-value=1.1e+02 Score=31.16 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|++.||+++..+|+ -+-++.|=++|.+-+- =+.+-.-|++.|+ .-|+|.-
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~-------yk~qQkaa~~LyK----~~pk~~y 145 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKS-------YKKQQKAALQLYK----NFPKRAY 145 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----hCCcccc
Confidence 68999999999999999 8999999999976321 1234444666665 5777753
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.53 E-value=1.1e+02 Score=28.56 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHh---cCCC-ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 2 ILDAISKLEEALM---VSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~leeAL~---idP~-~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
|.-||.+|+-+++ +.|. ...+++.||.+|... -+++++|..+.+||+.+.-.|.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e----------T~n~~~Ae~~L~k~~~l~~~~~ 94 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE----------TENLDLAETYLEKAILLCERHR 94 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhccccc
Confidence 5568999999983 2232 455688889999753 2599999999999988886553
No 363
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=37.08 E-value=38 Score=22.51 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=7.0
Q ss_pred cCCCchhhh
Q 031846 114 KSSDLKYDI 122 (152)
Q Consensus 114 ~~sd~~ydv 122 (152)
..++|.||.
T Consensus 3 e~~pF~YDy 11 (50)
T PF02038_consen 3 EDDPFYYDY 11 (50)
T ss_dssp CCSGGGGCH
T ss_pred cCCCCccch
Confidence 349999994
No 364
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=36.37 E-value=31 Score=31.20 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH-HHH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNE-LYQ 68 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne-~Yr 68 (152)
.+..-+|+..|.+|+.+-|+=| .||
T Consensus 32 ~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 32 DGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred cCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 3466667777777777777654 344
No 365
>PF13446 RPT: A repeated domain in UCH-protein
Probab=36.09 E-value=54 Score=21.35 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCCcH-HHHHHHHHHhcC
Q 031846 48 NKATLYFQQAVDEEPSNE-LYQKSLEVAAKA 77 (152)
Q Consensus 48 ekA~~~FqkAleldP~Ne-~YrkaLe~~~ka 77 (152)
+.-+.+|+..+..+|.+. .|+++|....++
T Consensus 20 d~Ii~~f~~~~~~~P~~~~~~r~AL~~Ia~~ 50 (62)
T PF13446_consen 20 DFIISAFQSKVNDDPSQKDTLREALRVIAES 50 (62)
T ss_pred HHHHHHHHHHHHcChHhHHHHHHHHHHHHHH
Confidence 457889999999999774 689999877543
No 366
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=36.08 E-value=20 Score=32.59 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=13.8
Q ss_pred ChHHHHHhHHHHHhccc
Q 031846 19 RHDTLWCLGNAHTSHAF 35 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~ 35 (152)
+...+||+|-.|+..|.
T Consensus 105 kasVLFNigAl~Sqlaa 121 (385)
T cd09249 105 KASILFNIGALYTQIGT 121 (385)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 34679999999998873
No 367
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=35.65 E-value=29 Score=21.27 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhh
Q 031846 126 VILAVGIVAWVGFAK 140 (152)
Q Consensus 126 ~il~~~iv~wv~~a~ 140 (152)
|||.+|.++.+||-|
T Consensus 6 i~L~l~ga~f~~fKK 20 (33)
T PF10855_consen 6 IILILGGAAFYGFKK 20 (33)
T ss_pred ehhhhhhHHHHHHHH
Confidence 678899999999988
No 368
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=35.58 E-value=33 Score=28.43 Aligned_cols=17 Identities=18% Similarity=0.638 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHh
Q 031846 122 IFGWVILAVGIVAWVGF 138 (152)
Q Consensus 122 v~gw~il~~~iv~wv~~ 138 (152)
.++|+++++.++.||.|
T Consensus 228 ~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899998888889866
No 369
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=35.38 E-value=31 Score=30.11 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=22.8
Q ss_pred hHHHHHhHHHHHhcccCCCC-----hHHHHHhHHHHHHHHHHHHH
Q 031846 20 HDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd-----~~eA~~~~ekA~~~FqkAle 59 (152)
...+||+|-.|+..|..... ..+|-..|.+|..||+-..+
T Consensus 106 a~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~ 150 (355)
T cd09241 106 ANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQ 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999887643322 12233345555555544444
No 370
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=35.12 E-value=49 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHH--HHcCCC--cHHHHHHHHHHhcCchhhHHHHHhhhc
Q 031846 45 EYFNKATLYFQQA--VDEEPS--NELYQKSLEVAAKAPELHMEIHKHGLG 90 (152)
Q Consensus 45 ~~~ekA~~~FqkA--leldP~--Ne~YrkaLe~~~kapel~~e~~~~~~~ 90 (152)
++|.+++.-|+-+ .+++++ +.+|.+.++.+++...+|..+-.++-+
T Consensus 73 DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 5788888888754 466775 358999999999999999888777643
No 371
>PF12854 PPR_1: PPR repeat
Probab=34.88 E-value=82 Score=18.13 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHH
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fqk 56 (152)
-.|..|=++|.+.| +.++|.+.|++
T Consensus 8 ~ty~~lI~~~Ck~G-----------~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAG-----------RVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCC-----------CHHHHHHHHHh
Confidence 56777788888765 89999999875
No 372
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.63 E-value=1.6e+02 Score=24.41 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=26.9
Q ss_pred HHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH-----cCCCcHH
Q 031846 27 GNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD-----EEPSNEL 66 (152)
Q Consensus 27 GnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle-----ldP~Ne~ 66 (152)
|.-|..+.-+. +.++-..--++|.++|++|++ +.|.|+.
T Consensus 123 gDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 123 GDYYRYLAEFD-SGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred ccccccccccc-cchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Confidence 77776654333 333444567888899998886 7899985
No 373
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=34.53 E-value=1.2e+02 Score=29.76 Aligned_cols=55 Identities=20% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
-.||+.|-+++..-|..+..|.|-.-++.+.++. ++.-.|+.-...|+++||...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~--------~d~~~AlrDch~Alrln~s~~ 445 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR--------GDSYLALRDCHVALRLNPSIQ 445 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc--------ccHHHHHHhHHhhccCChHHH
Confidence 4689999999999999999999998899887763 466677878889999999874
No 374
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=34.48 E-value=37 Score=25.29 Aligned_cols=20 Identities=35% Similarity=0.792 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhcCCCC
Q 031846 126 VILAVGIVAWVGFAKSHMPT 145 (152)
Q Consensus 126 ~il~~~iv~wv~~a~~~~p~ 145 (152)
++++++.++|+++.+...|+
T Consensus 14 ~vv~~~~~~w~~~~~~~~~~ 33 (112)
T PF14155_consen 14 VVVAGAVVAWFGYSQFGSPP 33 (112)
T ss_pred HHHHHHHHhHhhhhhccCCC
Confidence 34556689999999765554
No 375
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.22 E-value=75 Score=16.64 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHc
Q 031846 45 EYFNKATLYFQQAVDE 60 (152)
Q Consensus 45 ~~~ekA~~~FqkAlel 60 (152)
+++++|.+.|++-.+.
T Consensus 14 ~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 14 GRVEEALELFKEMLER 29 (35)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4999999999987653
No 376
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=34.16 E-value=88 Score=24.77 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
+++++..+.+-+.+++++.+.+-+||..+-. .|.+....+++-+++..++.++
T Consensus 90 w~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~-----~D~e~Q~k~i~L~~e~L~~~~~ 142 (171)
T PRK08307 90 WEKALEENWKNTALKKEDIEILLQFGKTLGQ-----SDREGQQKHIRLALEHLEREEE 142 (171)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888999999999999988753 4777777777777777666443
No 377
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=33.65 E-value=34 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHHHHHHHH-HhhhcCCCCC
Q 031846 119 KYDIFGWVILAVGIVAWV-GFAKSHMPTP 146 (152)
Q Consensus 119 ~ydv~gw~il~~~iv~wv-~~a~~~~p~~ 146 (152)
|==|+|.+++.+|+.+|+ .+-|..+.||
T Consensus 74 wk~v~~~~~~~i~~s~~l~~~~r~~~~~~ 102 (142)
T PF02936_consen 74 WKKVFGGVFIFIGFSVLLFIWQRSYVYPP 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 335888888888876664 3344455444
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.54 E-value=1.5e+02 Score=33.18 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCCChHH----HHHhHHHHHhcccCCCChHH--------------------HHHhHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDT----LWCLGNAHTSHAFLTPDQDE--------------------AKEYFNKATLYFQQA 57 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA----~~nLGnAy~~~g~l~pd~~e--------------------A~~~~ekA~~~FqkA 57 (152)
+..|+..||+- ..+++.-+. ++.|=+.|.+.+ .||.-+ +.+++..|..||+++
T Consensus 1399 y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~--dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~ 1475 (2382)
T KOG0890|consen 1399 YARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIH--DPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERL 1475 (2382)
T ss_pred HHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcC--CcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHh
Confidence 45566666664 334433222 445555666543 344333 346999999999999
Q ss_pred HHcCCCcH
Q 031846 58 VDEEPSNE 65 (152)
Q Consensus 58 leldP~Ne 65 (152)
+..+|+++
T Consensus 1476 ~q~~p~~~ 1483 (2382)
T KOG0890|consen 1476 IQKDPDKE 1483 (2382)
T ss_pred hcCCCccc
Confidence 99999976
No 379
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=33.54 E-value=37 Score=29.60 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=22.9
Q ss_pred ChHHHHHhHHHHHhcccCCCC-----hHHHHHhHHHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd-----~~eA~~~~ekA~~~FqkAle 59 (152)
+.-.+||+|-.|+..|....- ..+|-..|..|..+|+-.-+
T Consensus 118 ka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e 163 (346)
T cd09240 118 KVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKE 163 (346)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 446799999999887643211 12233455555555544433
No 380
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=32.82 E-value=86 Score=26.01 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++...|++||.+||..+|-|.
T Consensus 110 nerkr~al~~y~~al~~~ppn~ 131 (193)
T PF12925_consen 110 NERKRAALENYTAALQADPPNP 131 (193)
T ss_dssp HHHHHHHHHHHHHHHTCSS--H
T ss_pred HHHHHHHHHHHHHHHhcCCCCh
Confidence 3588899999999999999885
No 381
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=32.80 E-value=45 Score=29.09 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=23.5
Q ss_pred hHHHHHhHHHHHhcccCCCC---hHHHHHhHHHHHHHHHHHHH
Q 031846 20 HDTLWCLGNAHTSHAFLTPD---QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd---~~eA~~~~ekA~~~FqkAle 59 (152)
..++||+|.+|+.++..... ..+|-..|.+|.-||+-..+
T Consensus 113 ~~vLfn~aa~~s~~A~~~~~~e~~K~A~~~l~~AAG~f~~l~~ 155 (346)
T cd09247 113 GMVLFLYGAALRERASEVLPTEDFKEAATHLRRAAGVFEFLAH 155 (346)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999877643221 22333455566666655543
No 382
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=32.68 E-value=34 Score=27.18 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 031846 123 FGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 123 ~gw~il~~~iv~wv~~a~ 140 (152)
-||++|+|.+-++||..-
T Consensus 120 N~~l~Lavv~Ga~~G~fl 137 (155)
T KOG3386|consen 120 NGYLFLAVVLGAGVGYFL 137 (155)
T ss_pred hhHHHHHHHHHHhhhhhe
Confidence 399999999999999754
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.34 E-value=1.3e+02 Score=22.48 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH
Q 031846 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 4 eAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl 58 (152)
++...|+....-.=-.--|+|...-|.. -+..+++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~---------le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEF---------LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHH---------HHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHH---------HHHcCCHHHHHHHHHhhC
Confidence 4555555555444444444444444433 134579999999999876
No 384
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.17 E-value=1.8e+02 Score=22.61 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031846 44 KEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~YrkaLe 72 (152)
.++|.-|++....++..||+|+..|..+.
T Consensus 83 ~gd~~wA~~L~d~l~~adp~n~~ar~l~A 111 (141)
T PF14863_consen 83 AGDYQWAAELLDHLVFADPDNEEARQLKA 111 (141)
T ss_dssp CT-HHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 46999999999999999999998776653
No 385
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=31.72 E-value=99 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=24.4
Q ss_pred ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
.++..+-|+.-|++ .+.+||+..+-+||++.+.+
T Consensus 140 t~elq~aLAtyY~k------------rD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 140 TAELQYALATYYTK------------RDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred CHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhcCCC
Confidence 45666777776664 37888888888888877655
No 386
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=31.70 E-value=2.4e+02 Score=23.88 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCCCh--HHHHHh--HHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH-----cCCCcHH
Q 031846 4 DAISKLEEALMVSPNRH--DTLWCL--GNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD-----EEPSNEL 66 (152)
Q Consensus 4 eAIs~leeAL~idP~~~--dA~~nL--GnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle-----ldP~Ne~ 66 (152)
+-+..+++-|--+..++ .++|.- |--|..+.-+.++ ++-++--++|.++|++|++ +.|.|+.
T Consensus 98 eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~-~e~~~~~~~a~~aY~~A~e~a~~~L~pt~Pi 168 (244)
T smart00101 98 GILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTG-AERKEAAENTLVAYKSAQDIALAELPPTHPI 168 (244)
T ss_pred HHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHccCCCCCHH
Confidence 44555555553333332 334332 7777655433222 2334467899999999986 5688974
No 387
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.60 E-value=1.5e+02 Score=28.71 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld 61 (152)
++.-...|++-|+..|.+..+|-.-|..=+++| +.|.|-..|+-||.+.
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg-----------dtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLG-----------DTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhcCc
Confidence 445567899999999999999988888877765 7777777788777654
No 388
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.39 E-value=2e+02 Score=22.96 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhcCCC-------C---hHH--HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 1 MILDAISKLEEALMVSPN-------R---HDT--LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~leeAL~idP~-------~---~dA--~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+|+||...+.+|+++.-. + .|| |--|.-|+..+|.+ ++++.--++|+.||.|==+++-+.
T Consensus 24 ~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry----~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 24 AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRY----DECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp -HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-H----HHHHHHHHHHHHHHHHH--TTSTH
T ss_pred hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHHHHhhcccccccc
Confidence 478999999999975432 1 234 44566777877743 777788888999999988888765
No 389
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=31.39 E-value=68 Score=26.67 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl 58 (152)
-.+|+-|..+++. ++|++|++.|+-|+
T Consensus 247 ~LLW~~~~~~~~~-----------k~y~~A~~w~~~al 273 (278)
T PF08631_consen 247 TLLWNKGKKHYKA-----------KNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHhh-----------cCHHHHHHHHHHHH
Confidence 3489999998875 49999999999876
No 390
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.99 E-value=2e+02 Score=26.00 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcC-CCChHHHHHhHHHHHhcccCCCChHHHH---------------------------------HhHH
Q 031846 3 LDAISKLEEALMVS-PNRHDTLWCLGNAHTSHAFLTPDQDEAK---------------------------------EYFN 48 (152)
Q Consensus 3 eeAIs~leeAL~id-P~~~dA~~nLGnAy~~~g~l~pd~~eA~---------------------------------~~~e 48 (152)
.-..+.+.++++.| |.++...--||.+-...| |...|+ .+|-
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G----D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG----DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 34567788888877 556666677888776655 333222 2888
Q ss_pred HHHHHHHHHHHcCCCcHHHH
Q 031846 49 KATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 49 kA~~~FqkAleldP~Ne~Yr 68 (152)
+|...|.+.++.||.|..|-
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred HHHHHHhhccccCCCchhhh
Confidence 99999999999999997543
No 391
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=30.74 E-value=1.2e+02 Score=25.70 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHh-----cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHH----HHHHHHHH-cCC-CcHHHHHH
Q 031846 2 ILDAISKLEEALM-----VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKAT----LYFQQAVD-EEP-SNELYQKS 70 (152)
Q Consensus 2 ieeAIs~leeAL~-----idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~----~~FqkAle-ldP-~Ne~Yrka 70 (152)
.+.|...|++|++ +.|.|+ ..||.++-.-=|+ -|..++.++|+ .+|+.|+. +|. +.+.|+.+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~P---irLgLaLN~SVF~----yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~ds 216 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHP---IRLGLALNFSVFY----YEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDS 216 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHH
Confidence 5688999999986 457774 4566665211121 13345666665 55555553 222 23456655
Q ss_pred H
Q 031846 71 L 71 (152)
Q Consensus 71 L 71 (152)
.
T Consensus 217 t 217 (244)
T smart00101 217 T 217 (244)
T ss_pred H
Confidence 4
No 392
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=30.63 E-value=40 Score=30.50 Aligned_cols=16 Identities=19% Similarity=-0.064 Sum_probs=12.6
Q ss_pred hHHHHHhHHHHHhccc
Q 031846 20 HDTLWCLGNAHTSHAF 35 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~ 35 (152)
.-++||||.+|..++.
T Consensus 117 a~VLfnla~l~S~~A~ 132 (413)
T cd09245 117 AFVLLTYAYALSNLAR 132 (413)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578999999987765
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.52 E-value=55 Score=29.88 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=23.7
Q ss_pred ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAl 58 (152)
+-..+|.+|-+|.++ .+|.+|+.+|...|
T Consensus 163 ~is~~YyvGFaylMl-----------rRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLML-----------RRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 445689999999986 48899998888766
No 394
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.45 E-value=36 Score=27.15 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCCc
Q 031846 50 ATLYFQQAVDEEPSN 64 (152)
Q Consensus 50 A~~~FqkAleldP~N 64 (152)
|..||++|+.+.|++
T Consensus 1 A~~~Y~~A~~l~P~~ 15 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN 15 (278)
T ss_dssp HHHHHHHHHHH-TTB
T ss_pred CHHHHHHHHHhCCCC
Confidence 789999999999988
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=50 Score=30.95 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=28.3
Q ss_pred hHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+.-+|.+|.+.+-+ .+|..|.+||-+|+..-|.+
T Consensus 247 ARY~yY~GrIkaiq-----------ldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQ-----------LDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhHHHhh-----------cchhHHHHHHHHHHHhCcch
Confidence 34467788887754 59999999999999999986
No 396
>PHA02898 virion envelope protein; Provisional
Probab=29.96 E-value=69 Score=23.81 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.6
Q ss_pred ccccCCCchhhhhhHHHHHHHHHHHHHh
Q 031846 111 KKKKSSDLKYDIFGWVILAVGIVAWVGF 138 (152)
Q Consensus 111 ~~k~~sd~~ydv~gw~il~~~iv~wv~~ 138 (152)
|.++.+|-.|-..-=+.+.+|||.=+||
T Consensus 35 K~~~~~~~~wRalSii~FIlgivl~lG~ 62 (92)
T PHA02898 35 KSEKPADSALRSISIISFILAIILILGI 62 (92)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666655554
No 397
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=29.80 E-value=1.4e+02 Score=28.98 Aligned_cols=56 Identities=21% Similarity=0.044 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031846 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 5 AIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne 65 (152)
++...+.++.+.|++.+....+-..|. ++.+ -++.++.+++..+.+++++++|+|.
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~----~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY----LKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH----HHHhccHHHHHHHHHHHHHhhhhhh
Confidence 445556699999999999888833332 2111 2345688999999999999999985
No 398
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=29.66 E-value=60 Score=27.58 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=26.3
Q ss_pred ChHHHHHhHHHHHhcccCC------CChHHHHHhHHHHHHHHHHHHH
Q 031846 19 RHDTLWCLGNAHTSHAFLT------PDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 19 ~~dA~~nLGnAy~~~g~l~------pd~~eA~~~~ekA~~~FqkAle 59 (152)
..-.+||+|.+|+.+|... .+..+|-..|.+|..+|+...+
T Consensus 110 ~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~ 156 (345)
T cd09034 110 LLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKE 156 (345)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467999999998877532 2233344566666666666654
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.62 E-value=1.1e+02 Score=25.22 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=21.7
Q ss_pred HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 21 dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
...+.||..|...| +|++|+++|+++...
T Consensus 179 ~l~~~~A~ey~~~g-----------~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 179 YLSLEMAEEYFRLG-----------DYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence 34566777777654 999999999999543
No 400
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=29.38 E-value=94 Score=28.38 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=44.2
Q ss_pred HHHHHhcC--CCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCC---------CcHHHHHHHHHHhcC
Q 031846 9 LEEALMVS--PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP---------SNELYQKSLEVAAKA 77 (152)
Q Consensus 9 leeAL~id--P~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP---------~Ne~YrkaLe~~~ka 77 (152)
|+.|+++- -++..-|-.||.+...+| +++-|.+||+|+=+.+- +-+.-++..+++.+.
T Consensus 334 L~~A~~~a~~~~~~~~W~~Lg~~AL~~g-----------~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELDDPEKWKQLGDEALRQG-----------NIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCSTHHHHHHHHHHHHHTT-----------BHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 45555433 235667888999988765 99999999999632211 112345556666666
Q ss_pred chhhHHHHHhhh
Q 031846 78 PELHMEIHKHGL 89 (152)
Q Consensus 78 pel~~e~~~~~~ 89 (152)
-.++..++..+.
T Consensus 403 ~~~n~af~~~~~ 414 (443)
T PF04053_consen 403 GDINIAFQAALL 414 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 677777776654
No 401
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=29.30 E-value=9.9 Score=26.53 Aligned_cols=18 Identities=44% Similarity=1.075 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 031846 119 KYDIFGWVILAVGIVAWV 136 (152)
Q Consensus 119 ~ydv~gw~il~~~iv~wv 136 (152)
-++--||--.+||.|.||
T Consensus 32 gfeakgwqtyavglvtwv 49 (70)
T PF10953_consen 32 GFEAKGWQTYAVGLVTWV 49 (70)
T ss_pred eecccCceeeeehhHHHH
Confidence 356668999999999996
No 402
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=28.11 E-value=1.2e+02 Score=23.91 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
+++++..+.+-+.+.+++.+.+-+||..+-. .|.+.....++-+++..++.++
T Consensus 89 w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~-----~D~e~Q~k~i~L~~~~L~~~~~ 141 (170)
T TIGR02833 89 WKKALNEVWKQTALQKSEKEILLQFGKTLGE-----SDREGQQKHINLTLEHLERQLT 141 (170)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHCc-----CcHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888899999999988753 4677777777777766666543
No 403
>PRK14762 membrane protein; Provisional
Probab=27.78 E-value=54 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHH
Q 031846 122 IFGWVILAVGIVAW 135 (152)
Q Consensus 122 v~gw~il~~~iv~w 135 (152)
+.+|+|+.+-+++-
T Consensus 3 i~lw~i~iifligl 16 (27)
T PRK14762 3 IILWAVLIIFLIGL 16 (27)
T ss_pred eHHHHHHHHHHHHH
Confidence 67999877655543
No 404
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=27.41 E-value=2.6e+02 Score=27.21 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=44.9
Q ss_pred HHHHHHHHHHh-----cCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcC-------CCcHHHHHHH
Q 031846 4 DAISKLEEALM-----VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE-------PSNELYQKSL 71 (152)
Q Consensus 4 eAIs~leeAL~-----idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleld-------P~Ne~YrkaL 71 (152)
.+++.|++|+. .+-.|---|-+||.-|++++ +|.+|+.+.-+|-+.= -+-|.|++-+
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~-----------~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfl 365 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHK-----------RYREALRSWAEAADVIRKYNYSREDEEIYKEFL 365 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHH-----------HHHHHHHHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 35666777774 24445566888988888764 7778887777764431 1236899888
Q ss_pred HHHhcCchhhHHHHHhh
Q 031846 72 EVAAKAPELHMEIHKHG 88 (152)
Q Consensus 72 e~~~kapel~~e~~~~~ 88 (152)
|++. ||-+.+.|.-
T Consensus 366 eIAn---eLiP~~lk~~ 379 (618)
T PF05053_consen 366 EIAN---ELIPNVLKSE 379 (618)
T ss_dssp HHHH---THHHHHHHHH
T ss_pred HHHH---HHHHHHHHhh
Confidence 8764 6667776654
No 405
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.31 E-value=1.2e+02 Score=25.21 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHh-----cCCCChHHHHHhHHHH
Q 031846 2 ILDAISKLEEALM-----VSPNRHDTLWCLGNAH 30 (152)
Q Consensus 2 ieeAIs~leeAL~-----idP~~~dA~~nLGnAy 30 (152)
.+.|...|++|++ +.|.++ ..||.++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p---~rLgl~L 172 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHP---LRLGLAL 172 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSH---HHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCc---HHHHHHH
Confidence 4678888888885 567773 4556665
No 406
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.30 E-value=2.1e+02 Score=22.82 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCh----HHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHc
Q 031846 5 AISKLEEALMVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 5 AIs~leeAL~idP~~~----dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAlel 60 (152)
|...|.+==+++.+.- .|.|+.+.|+..+| ..++|+..|++|.+.
T Consensus 81 aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~G-----------r~~eA~~~fr~agEM 129 (144)
T PF12968_consen 81 ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLG-----------RKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHH
Confidence 3444444445565543 35577788877654 899999999988763
No 407
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=1.6e+02 Score=27.37 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCC-------hHHHHHhHHHHHhcc-------cCCCCh-------------HHHHHhHHHHHHHHHH
Q 031846 4 DAISKLEEALMVSPNR-------HDTLWCLGNAHTSHA-------FLTPDQ-------------DEAKEYFNKATLYFQQ 56 (152)
Q Consensus 4 eAIs~leeAL~idP~~-------~dA~~nLGnAy~~~g-------~l~pd~-------------~eA~~~~ekA~~~Fqk 56 (152)
+|....++.|+--|++ |+|++++||--.+.. +-++|. -+-.+.|++|.+.-+|
T Consensus 121 ~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~r 200 (491)
T KOG2610|consen 121 EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADR 200 (491)
T ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHh
Confidence 4555667777777763 788888887544321 112222 1223588899999999
Q ss_pred HHHcCCCcHHHHHH
Q 031846 57 AVDEEPSNELYQKS 70 (152)
Q Consensus 57 AleldP~Ne~Yrka 70 (152)
|++|||.+.-..++
T Consensus 201 alqiN~~D~Wa~Ha 214 (491)
T KOG2610|consen 201 ALQINRFDCWASHA 214 (491)
T ss_pred hccCCCcchHHHHH
Confidence 99999987644333
No 408
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=26.94 E-value=36 Score=25.20 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 031846 121 DIFGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 121 dv~gw~il~~~iv~wv~~a~ 140 (152)
|+++|=|+.+.||++|.|--
T Consensus 3 ~iG~~ElliIlvi~LllFGp 22 (92)
T PRK00575 3 SLSPWHWAILAVVVILLFGA 22 (92)
T ss_pred cccHHHHHHHHHHHHHhccc
Confidence 67888899999999987763
No 409
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=26.51 E-value=53 Score=27.77 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHcCCCc
Q 031846 45 EYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~N 64 (152)
++.++|+.++++|+++||+-
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 36679999999999999964
No 410
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=26.36 E-value=78 Score=19.97 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.2
Q ss_pred hhHHHHHHH
Q 031846 123 FGWVILAVG 131 (152)
Q Consensus 123 ~gw~il~~~ 131 (152)
-||+++++.
T Consensus 14 r~Wi~F~l~ 22 (38)
T PF09125_consen 14 RGWIAFALA 22 (38)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 389988877
No 411
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=25.80 E-value=38 Score=20.10 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHcCCCcHHHHHHH
Q 031846 57 AVDEEPSNELYQKSL 71 (152)
Q Consensus 57 AleldP~Ne~YrkaL 71 (152)
.++|||+|+.|++.-
T Consensus 12 dF~ID~t~~~yk~~~ 26 (30)
T PF08159_consen 12 DFAIDPTSPEYKKTN 26 (30)
T ss_pred ccccCCCCHHHHhhC
Confidence 356899999998753
No 412
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=25.68 E-value=1.3e+02 Score=18.30 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHH
Q 031846 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ 55 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~Fq 55 (152)
++.|..|....-.++ ..|...|-.. ..+.+.|+..|=
T Consensus 1 ~e~i~~F~~iTg~~~--~~A~~~L~~~--------------~wdle~Av~~y~ 37 (43)
T PF14555_consen 1 DEKIAQFMSITGADE--DVAIQYLEAN--------------NWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHHH-SSH--HHHHHHHHHT--------------TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHCcCH--HHHHHHHHHc--------------CCCHHHHHHHHH
Confidence 467778887777644 5555555443 247788887763
No 413
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=25.62 E-value=93 Score=23.14 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=17.0
Q ss_pred ccccCCCchhhhhhHHHHHHHHHHHHHh
Q 031846 111 KKKKSSDLKYDIFGWVILAVGIVAWVGF 138 (152)
Q Consensus 111 ~~k~~sd~~ydv~gw~il~~~iv~wv~~ 138 (152)
|.++.+|-.|-+.-=+.+.+|||.=+|+
T Consensus 35 K~~~~~~~~wRalSii~FI~giil~lG~ 62 (92)
T PF05767_consen 35 KNTKPTDYTWRALSIICFILGIILTLGI 62 (92)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666655554
No 414
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=25.50 E-value=1.4e+02 Score=20.41 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHh
Q 031846 2 ILDAISKLEEALM 14 (152)
Q Consensus 2 ieeAIs~leeAL~ 14 (152)
|++|+..+++.++
T Consensus 3 fEe~l~~Le~Iv~ 15 (67)
T TIGR01280 3 FEEALSELEQIVQ 15 (67)
T ss_pred HHHHHHHHHHHHH
Confidence 6888888888874
No 415
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=25.39 E-value=66 Score=24.47 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 031846 119 KYDIFGWVILAVGIVAWVG 137 (152)
Q Consensus 119 ~ydv~gw~il~~~iv~wv~ 137 (152)
|-=--||-||++.+++.++
T Consensus 17 wP~a~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 17 WPLAPGWWLLLALLLLLLI 35 (146)
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 3334577777766555543
No 416
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.84 E-value=5.7e+02 Score=24.95 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHH-----HHHHHHhcCCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 2 ILDAIS-----KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs-----~leeAL~idP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
||++|. .||+-++-||-+-|+||..=..-.+. ++-+.-.+.|+||+.--|-.
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~-----------g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV-----------GDKDRIRETYERAIANVPPA 355 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCch
Confidence 455654 58999999999999999875555443 46777777888888777754
No 417
>PHA03326 nuclear egress membrane protein; Provisional
Probab=24.79 E-value=4.6e+02 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcCCCCCC
Q 031846 120 YDIFGWVILAVGIVAWVGFAKSHMPTPP 147 (152)
Q Consensus 120 ydv~gw~il~~~iv~wv~~a~~~~p~~~ 147 (152)
.-+.|-+.|+..+|..|......-++.+
T Consensus 245 ~~l~g~~~l~~llv~~v~~~~~~~~~~~ 272 (275)
T PHA03326 245 VALVGAVVLALLLVCYVLWKAAPRAASG 272 (275)
T ss_pred hHHHHHHHHHHHHHHHHHccccccCCCC
Confidence 3567777777777666655554333333
No 418
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=24.76 E-value=60 Score=21.63 Aligned_cols=14 Identities=36% Similarity=1.123 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHH
Q 031846 121 DIFGWVILAVGIVA 134 (152)
Q Consensus 121 dv~gw~il~~~iv~ 134 (152)
-+.||+++++||+.
T Consensus 5 ~v~G~~lv~~Gii~ 18 (53)
T PF09656_consen 5 GVLGWVLVVAGIIM 18 (53)
T ss_pred hhHHHHHHHHHHHh
Confidence 36789998888764
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.19 E-value=59 Score=28.49 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCChHH----HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 2 ILDAISKLEEALMVSPNRHDT----LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~leeAL~idP~~~dA----~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
++.|...|++.|+|||.++-. +--||..-+- ..|-..=...-||.=.+-|+..|-.+=+...=.+.-+|.
T Consensus 45 ~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p---~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI 118 (287)
T COG4976 45 FDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETP---EKPPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMI 118 (287)
T ss_pred HHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 578999999999999998643 1112221110 011111123467777788888887766664444444444
No 420
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=24.05 E-value=3.1e+02 Score=27.85 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCC---hHHHHHhHHHH-------HHHHHHHHHcCCCcH---
Q 031846 2 ILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPD---QDEAKEYFNKA-------TLYFQQAVDEEPSNE--- 65 (152)
Q Consensus 2 ieeAIs~leeAL~idP~---~~dA~~nLGnAy~~~g~l~pd---~~eA~~~~ekA-------~~~FqkAleldP~Ne--- 65 (152)
|+.|++.|.+.-.-=|. --+|.|.+|.++..+.-.+.| -++|.+.|++= ++|.-|||--+-.++
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (932)
T PRK13184 491 YDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNE 570 (932)
T ss_pred HHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHH
Q ss_pred ---HHHHHHHHHhcCchh
Q 031846 66 ---LYQKSLEVAAKAPEL 80 (152)
Q Consensus 66 ---~YrkaLe~~~kapel 80 (152)
.|..+++-+++.||+
T Consensus 571 ~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 571 EIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHhcCCCCcc
No 421
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=23.91 E-value=50 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCC
Q 031846 121 DIFGWVILAVGIVAWVGFAKSHM 143 (152)
Q Consensus 121 dv~gw~il~~~iv~wv~~a~~~~ 143 (152)
+++.|=||.++||++|.|--...
T Consensus 2 ~ig~~ElliI~vI~lllFGp~KL 24 (84)
T PRK00191 2 SLGPWEIGIIVLLIIVLFGAKKL 24 (84)
T ss_pred CCcHHHHHHHHHHHHHHhcchHH
Confidence 56778888889999987764333
No 422
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.69 E-value=1.5e+02 Score=20.95 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 031846 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~leeAL 13 (152)
|++|+..|++.+
T Consensus 12 fEea~~~LEeIv 23 (80)
T PRK00977 12 FEEALAELEEIV 23 (80)
T ss_pred HHHHHHHHHHHH
Confidence 566666666666
No 423
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=23.68 E-value=1.5e+02 Score=25.73 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhhHHHHHh
Q 031846 44 KEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKH 87 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~~e~~~~ 87 (152)
+..|..=++--+.||.-||.|+.|.+.-+-...=+.|..+|-..
T Consensus 5 L~sYK~QLqqVeaaL~~dP~NeEllkLe~DLkEvIsLTedLlqT 48 (262)
T KOG3026|consen 5 LASYKLQLQQVEAALQGDPENEELLKLEKDLKEVISLTEDLLQT 48 (262)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777779999999999999999887777777777776553
No 424
>PHA02898 virion envelope protein; Provisional
Probab=23.53 E-value=61 Score=24.10 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=18.1
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCC
Q 031846 122 IFGWVILAVG-IVAWVGFAKSHMP 144 (152)
Q Consensus 122 v~gw~il~~~-iv~wv~~a~~~~p 144 (152)
++|=++|++. |.|.|=|.|+..|
T Consensus 16 i~GIiLL~~ACIfAfidfSK~~~~ 39 (92)
T PHA02898 16 AFGIILLIVACICAYIELSKSEKP 39 (92)
T ss_pred HHHHHHHHHHHHHheehhhcCCCc
Confidence 4666777766 8999999998775
No 425
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.41 E-value=88 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=18.8
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCCC
Q 031846 122 IFGWVILAVG-IVAWVGFAKSHMPT 145 (152)
Q Consensus 122 v~gw~il~~~-iv~wv~~a~~~~p~ 145 (152)
++|=++|++. |.|.|=|.|+...|
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~ 40 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNV 40 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCC
Confidence 5777778777 88999999976543
No 426
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.38 E-value=1.5e+02 Score=17.92 Aligned_cols=22 Identities=18% Similarity=0.310 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHcCCCcHHH
Q 031846 46 YFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~Y 67 (152)
.+|.|-..|++.|...|+-..+
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHH
Confidence 5789999999999999976544
No 427
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.97 E-value=54 Score=30.82 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=19.9
Q ss_pred ccccCCCchhhhhhHHHHHHHHHHH
Q 031846 111 KKKKSSDLKYDIFGWVILAVGIVAW 135 (152)
Q Consensus 111 ~~k~~sd~~ydv~gw~il~~~iv~w 135 (152)
|+|+.-|..+|..||+++.+|++..
T Consensus 470 ~~~~~~~a~~~~~~w~l~~~g~~~~ 494 (646)
T PRK05771 470 RKGDYKDAFLAQLGWLLILLGILLI 494 (646)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678899999999988886554
No 428
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=22.88 E-value=1.3e+02 Score=23.99 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCchhhHHHHHhhh
Q 031846 45 EYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGL 89 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~YrkaLe~~~kapel~~e~~~~~~ 89 (152)
+++.+|++-|---..-||+.-.||.+++..|.|.|.-.++.=-+.
T Consensus 15 ~r~~~A~Dt~~~l~~ae~gsRA~r~A~~elPEAl~till~~ll~~ 59 (144)
T PF01350_consen 15 ERFQEALDTLYTLMTAEPGSRAYRMALEELPEALETILLVVLLGV 59 (144)
T ss_pred HHHHHHHHHHHhhhhCCCCcHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999998888766443
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.88 E-value=1.4e+02 Score=25.06 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHH-HHHhcCchhhHHHHHh
Q 031846 44 KEYFNKATLYFQQAVDEEPSNELYQKSL-EVAAKAPELHMEIHKH 87 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~YrkaL-e~~~kapel~~e~~~~ 87 (152)
+++|++|.+.+++-.. ||++..+|.-| .+..+---.|+-|++.
T Consensus 124 ~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 124 NGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred cCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 4699999999999999 99887666555 4444444567766663
No 430
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=22.63 E-value=2.2e+02 Score=24.27 Aligned_cols=59 Identities=19% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031846 5 AISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 5 AIs~leeAL~idP~--~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~Ne~YrkaLe~~ 74 (152)
|...+....+.-|. -+.++..||.+.+..| +=-.|-.++++|++.+|+|.+.+-..+..
T Consensus 257 a~~lw~~~~r~~~~~~ra~~l~l~a~~a~~~g-----------~g~~A~~al~~a~~~~p~~~la~ll~~~l 317 (324)
T PF13830_consen 257 AERLWRALARRLPGPWRAAALALLAWAAWLRG-----------DGALAGVALDRALEADPDHSLAQLLDQAL 317 (324)
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHhcC-----------CchHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 44444444443333 4566777788887655 77789999999999999998765554443
No 431
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=22.54 E-value=1.7e+02 Score=26.42 Aligned_cols=51 Identities=22% Similarity=0.202 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCChHH------HHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHHcCCCc
Q 031846 3 LDAISKLEEALMVSPNRHDT------LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 3 eeAIs~leeAL~idP~~~dA------~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAleldP~N 64 (152)
+-|.+.++.||.......|. -+.-|.+|.- .++|+-|.-||.+|+.+=-++
T Consensus 56 ~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~-----------ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 56 ENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFN-----------IKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhh-----------HHHHHHHHHHHHHHHHHhhcc
Confidence 56788889999877766553 2333555543 479999999999999885444
No 432
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.23 E-value=1.1e+02 Score=24.68 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=17.7
Q ss_pred ccccCCCchhhhhhHHHHHH---HHHHHHHhhh
Q 031846 111 KKKKSSDLKYDIFGWVILAV---GIVAWVGFAK 140 (152)
Q Consensus 111 ~~k~~sd~~ydv~gw~il~~---~iv~wv~~a~ 140 (152)
++||++=+.+-|.|=|+|.+ |+++|+-|..
T Consensus 12 ~~k~~~~l~~iIi~~~llll~~~G~~~~~~~~~ 44 (182)
T PRK08455 12 KKKKSKALLIIIIGVVVLLLLIVGVIAMLLMGS 44 (182)
T ss_pred cCCCCceeEEehHHHHHHHHHHHHHHHHHHhcC
Confidence 44555567777777655443 4666765544
No 433
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.08 E-value=1.9e+02 Score=18.41 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q 031846 2 ILDAISKLEEALM 14 (152)
Q Consensus 2 ieeAIs~leeAL~ 14 (152)
|++|+..+++.++
T Consensus 1 fEe~~~~Le~Iv~ 13 (53)
T PF02609_consen 1 FEEAMERLEEIVE 13 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5777777777773
No 434
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=21.83 E-value=64 Score=27.52 Aligned_cols=15 Identities=27% Similarity=0.842 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHH
Q 031846 122 IFGWVILAVGIVAWV 136 (152)
Q Consensus 122 v~gw~il~~~iv~wv 136 (152)
+.||+++++.++.-+
T Consensus 180 ~lGW~LI~~~~i~a~ 194 (251)
T PF14798_consen 180 VLGWILIALVIILAF 194 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999998866543
No 435
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=21.70 E-value=1.6e+02 Score=19.01 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCChHHHHHhHHHHH
Q 031846 6 ISKLEEALMVSPNRHDTLWCLGNAHT 31 (152)
Q Consensus 6 Is~leeAL~idP~~~dA~~nLGnAy~ 31 (152)
+.+.++.+.+|+++++..+.|-.|+.
T Consensus 33 l~ki~~l~g~dl~~~~~~~~l~lAl~ 58 (59)
T PF13556_consen 33 LKKIEELLGLDLDDPEDRLELYLALR 58 (59)
T ss_dssp HHHHHHHHS--TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCHHHHHHHHHHHh
Confidence 56788999999999999988887763
No 436
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=21.63 E-value=2.7e+02 Score=22.58 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=23.0
Q ss_pred CCCChHHHHHhHHHHHhcccCCCChHHHHHhHHHHHHHHHHHHH
Q 031846 16 SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 16 dP~~~dA~~nLGnAy~~~g~l~pd~~eA~~~~ekA~~~FqkAle 59 (152)
+.-+++-+.-|++||.++| +-.+|-+...+|-+
T Consensus 116 ~~~~p~~L~kia~Ay~klg-----------~~r~~~ell~~ACe 148 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLG-----------NTREANELLKEACE 148 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHH
Confidence 4557788999999999976 66677777766654
No 437
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=21.44 E-value=56 Score=29.02 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=10.3
Q ss_pred hHHHHHhHHHHHh
Q 031846 20 HDTLWCLGNAHTS 32 (152)
Q Consensus 20 ~dA~~nLGnAy~~ 32 (152)
...+||+|..|++
T Consensus 109 ~sVLfNigal~s~ 121 (353)
T cd09243 109 ASMLFNVALWYTK 121 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 3578999999964
No 438
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=21.05 E-value=79 Score=23.79 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=13.2
Q ss_pred hhh-hhhHHHHHHHHHHHH
Q 031846 119 KYD-IFGWVILAVGIVAWV 136 (152)
Q Consensus 119 ~yd-v~gw~il~~~iv~wv 136 (152)
.+| |-||++||-.+.+-|
T Consensus 75 ~Fd~vDGWLmLArVaPaa~ 93 (100)
T PF15651_consen 75 VFDFVDGWLMLARVAPAAV 93 (100)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 344 679999998776655
No 439
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=20.90 E-value=43 Score=16.05 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.3
Q ss_pred hHHHHHHHH
Q 031846 46 YFNKATLYF 54 (152)
Q Consensus 46 ~~ekA~~~F 54 (152)
.|++|-+||
T Consensus 4 ~y~~Aa~~y 12 (12)
T PF02071_consen 4 CYEKAAECY 12 (12)
T ss_pred HHHHHHhhC
Confidence 444554443
No 440
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=20.69 E-value=1.1e+02 Score=19.73 Aligned_cols=10 Identities=30% Similarity=1.059 Sum_probs=8.3
Q ss_pred HHHHHHHHHH
Q 031846 127 ILAVGIVAWV 136 (152)
Q Consensus 127 il~~~iv~wv 136 (152)
++-+|||.|+
T Consensus 21 ~~Figiv~wa 30 (48)
T cd01324 21 LFFLGVVVWA 30 (48)
T ss_pred HHHHHHHHHH
Confidence 5678899998
No 441
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=20.67 E-value=81 Score=23.45 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=16.1
Q ss_pred chhhhhhHHHHHHHHHHHHHh
Q 031846 118 LKYDIFGWVILAVGIVAWVGF 138 (152)
Q Consensus 118 ~~ydv~gw~il~~~iv~wv~~ 138 (152)
++|=+++|+-+.+.+..|+.+
T Consensus 49 mr~K~~aW~al~~s~~S~an~ 69 (103)
T PF03669_consen 49 MRNKWCAWAALFFSCQSFANM 69 (103)
T ss_pred HHhHHHHHHHHHHHHHHHHcC
Confidence 467788888888888877755
No 442
>PRK15244 virulence protein SpvB; Provisional
Probab=20.58 E-value=50 Score=31.77 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=22.3
Q ss_pred cCCCchhhhhhHHHHHHHH--HHH--HHhhh---cCCCCCCCCCCC
Q 031846 114 KSSDLKYDIFGWVILAVGI--VAW--VGFAK---SHMPTPPPTPPR 152 (152)
Q Consensus 114 ~~sd~~ydv~gw~il~~~i--v~w--v~~a~---~~~p~~~~~~~~ 152 (152)
.+-+|.||-..=+-+.+++ +|+ =|--+ .+||||||+||+
T Consensus 329 ~rl~L~Yde~~~~S~L~sv~~~a~e~dg~~~~~~~~~~~~~~~~~~ 374 (591)
T PRK15244 329 SRLLLEYDENPILTQLCAARTLAYEGDGYRRAPVNNMMPPPPPPPM 374 (591)
T ss_pred eeeecccccCcchhhhhhhhhheecCCCcccccCCCCCCCcccCcc
Confidence 3568999986655555443 333 12222 567777776663
No 443
>COG2707 Predicted membrane protein [Function unknown]
Probab=20.56 E-value=83 Score=25.32 Aligned_cols=16 Identities=50% Similarity=0.702 Sum_probs=13.1
Q ss_pred hhhHHHHHHH-HHHHHH
Q 031846 122 IFGWVILAVG-IVAWVG 137 (152)
Q Consensus 122 v~gw~il~~~-iv~wv~ 137 (152)
.-+|+-+++| +|+|++
T Consensus 83 ~k~~~Al~~Gi~VawLa 99 (151)
T COG2707 83 WKMIVALAVGVLVAWLA 99 (151)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 4589999999 799974
No 444
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.43 E-value=1.8e+02 Score=21.59 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHh
Q 031846 2 ILDAISKLEEALM 14 (152)
Q Consensus 2 ieeAIs~leeAL~ 14 (152)
|++|+..|++.+.
T Consensus 10 FEeal~~LEeIV~ 22 (95)
T PRK14069 10 FEDALRELEQIAE 22 (95)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777773
No 445
>PRK14756 hypothetical protein; Provisional
Probab=20.43 E-value=1.3e+02 Score=17.92 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=15.7
Q ss_pred CCCchhhhhhHHHHHHHHHHH
Q 031846 115 SSDLKYDIFGWVILAVGIVAW 135 (152)
Q Consensus 115 ~sd~~ydv~gw~il~~~iv~w 135 (152)
++|+||-.+-=||..+-||+.
T Consensus 2 ~tdLK~SL~tTvvaL~~Iva~ 22 (29)
T PRK14756 2 STDLKFSLVTTIIVLGLIVAV 22 (29)
T ss_pred CcchhhhHHHHHHHHHHHHHH
Confidence 589999988877766556654
No 446
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.01 E-value=1.9e+02 Score=20.52 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 031846 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~leeAL 13 (152)
|++|+..|++.+
T Consensus 9 fEeal~~LEeIV 20 (80)
T PRK14067 9 FEQQLARLQEIV 20 (80)
T ss_pred HHHHHHHHHHHH
Confidence 567777777766
Done!