BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031849
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK F+ AT +FQQAVDE
Sbjct: 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLG 90
+P N Y KSLE+ AKAP+LH E +K GLG
Sbjct: 121 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLG 150
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 20/85 (23%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA------------- 50
+AI ++AL + PN + + LGNA+ + D DEA EY+ KA
Sbjct: 27 EAIEYYQKALELYPNNAEAWYNLGNAY----YKQGDYDEAIEYYQKALELYPNNAEAWYN 82
Query: 51 --TLYFQQAVDEEPSNELYQKSLEV 73
Y++Q D + + E YQK+LE+
Sbjct: 83 LGNAYYKQG-DYDEAIEYYQKALEL 106
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 20/75 (26%)
Query: 14 MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA---------------TLYFQQAV 58
M N + + LGNA+ + D DEA EY+ KA Y++Q
Sbjct: 3 MDPGNSAEAWYNLGNAY----YKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQG- 57
Query: 59 DEEPSNELYQKSLEV 73
D + + E YQK+LE+
Sbjct: 58 DYDEAIEYYQKALEL 72
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 20/85 (23%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA------------- 50
+AI ++AL + PN + + LGNA+ + D DEA EY+ KA
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAY----YKQGDYDEAIEYYQKALELDPNNAEAWYN 82
Query: 51 --TLYFQQAVDEEPSNELYQKSLEV 73
Y++Q D + + E YQK+LE+
Sbjct: 83 LGNAYYKQG-DYDEAIEYYQKALEL 106
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
+AI ++AL + PN + + LGNA+ + D DEA EY+ Q+A++ +P+
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAY----YKQGDYDEAIEYY-------QKALELDPN 109
Query: 64 N 64
N
Sbjct: 110 N 110
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHA-----------FLTPDQDEAKEYFNKATLY 53
AI ++AL + PN + LGNA+ L D + AK ++ + Y
Sbjct: 28 AIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAY 87
Query: 54 FQQAVDEEPSNELYQKSLEV 73
++Q D + + E YQK+LE+
Sbjct: 88 YKQG-DYQKAIEDYQKALEL 106
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 20/89 (22%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA------------- 50
+AI ++AL + P + + LGNA+ + D DEA EY+ KA
Sbjct: 53 EAIEYYQKALELDPRSAEAWYNLGNAY----YKQGDYDEAIEYYQKALELDPRSAEAWYN 108
Query: 51 --TLYFQQAVDEEPSNELYQKSLEVAAKA 77
Y++Q D + + E YQK+LE+ ++
Sbjct: 109 LGNAYYKQG-DYDEAIEYYQKALELDPRS 136
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA 50
+AI ++AL + PN + + LGNA+ + D DEA EY+ KA
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAY----YKQGDYDEAIEYYQKA 69
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 20/75 (26%)
Query: 14 MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKA---------------TLYFQQAV 58
M N + + LGNA+ + D DEA EY+ KA Y++Q
Sbjct: 3 MDPGNSAEAWYNLGNAY----YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG- 57
Query: 59 DEEPSNELYQKSLEV 73
D + + E YQK+LE+
Sbjct: 58 DYDEAIEYYQKALEL 72
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 39 DQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQT 93
D +AK+Y N A ++ QA++ PSN +Y + +A L E + + LG T
Sbjct: 15 DYFKAKDYEN-AIKFYSQAIELNPSNAIYYGNRSLAY----LRTECYGYALGDAT 64
>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
Desulfovibrio Gigas
Length = 560
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 60 EEPSNELYQKSLEVAAKAPELHMEIHKHG 88
E P ++YQK +E AAK+P M H HG
Sbjct: 461 EFPHRKIYQKLVEEAAKSP---MANHFHG 486
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 42 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQT 93
+AK+Y N A ++ QA++ PSN +Y + +A L E + + LG T
Sbjct: 25 KAKDYEN-AIKFYSQAIELNPSNAIYYGNRSLAY----LRTECYGYALGDAT 71
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 49 KATLYFQQAVDEEPSNELYQKSLEVA 74
+A Y+++A++ +P NE Y+ +L++A
Sbjct: 98 EAVAYYKKALELDPDNETYKSNLKIA 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,621,739
Number of Sequences: 62578
Number of extensions: 109397
Number of successful extensions: 301
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 26
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)