BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031849
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum
GN=TOM20 PE=1 SV=1
Length = 204
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/143 (76%), Positives = 118/143 (82%), Gaps = 3/143 (2%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT FQQA D
Sbjct: 56 MISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDA 115
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 120
+PSN+LY+KSLEV AKAPELHMEIH+HG QQTM A STS+ K+SKK KSSDLKY
Sbjct: 116 DPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAE---PSTSTSTKSSKKTKSSDLKY 172
Query: 121 DIFGWVILAVGIVAWVGFAKSHM 143
DIFGWVILAVGIVAWVGFAKS+M
Sbjct: 173 DIFGWVILAVGIVAWVGFAKSNM 195
>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis
thaliana GN=TOM20-3 PE=1 SV=1
Length = 202
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK F+ AT +FQQAVDE
Sbjct: 56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 120
+P N Y KSLE+ AKAP+LH E +K GLG Q MG P+ SS K K KKSSD KY
Sbjct: 116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSS--KAVKNKKSSDAKY 173
Query: 121 DIFGWVILAVGIVAWVGFAKSHMPPPPP 148
D GWVILA+G+VAW+ FAK+++P PP
Sbjct: 174 DAMGWVILAIGVVAWISFAKANVPVSPP 201
>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza
sativa subsp. japonica GN=TOM20 PE=2 SV=1
Length = 202
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/145 (58%), Positives = 105/145 (72%), Gaps = 4/145 (2%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
DA SKLEEAL + P + D LWCLGNA TSH F T D +A E+F KAT FQ+AVD EP+
Sbjct: 61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPA 120
Query: 64 NELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIF 123
N+LY+KSL++++KAPELHMEIH+ Q AS SSTS+ ++ KKKK SD YD+F
Sbjct: 121 NDLYRKSLDLSSKAPELHMEIHR----QMASQASQAASSTSNTRQSRKKKKDSDFWYDVF 176
Query: 124 GWVILAVGIVAWVGFAKSHMPPPPP 148
GWV+L VG+V WVG AKS+ PP P
Sbjct: 177 GWVVLGVGMVVWVGLAKSNAPPQAP 201
>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis
thaliana GN=TOM20-2 PE=1 SV=2
Length = 210
Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 110/152 (72%), Gaps = 5/152 (3%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
M+ DAISKLEEAL ++P +H LWC+ NA+T+HAF D +EAKE+F+KAT YFQ+A +E
Sbjct: 57 MLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGP-----SSTSSGAKTSKKKKS 115
+P N+ Y+KSL+ + KAPELHM+ G+GQQ +G G +S++ + KKK++
Sbjct: 117 DPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRN 176
Query: 116 SDLKYDIFGWVILAVGIVAWVGFAKSHMPPPP 147
++ YD+ GW+ILA GIVAWVG AKS PPPP
Sbjct: 177 TEFTYDVCGWIILACGIVAWVGMAKSLGPPPP 208
>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza
sativa subsp. indica GN=TOM20 PE=2 SV=2
Length = 201
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 105/145 (72%), Gaps = 5/145 (3%)
Query: 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63
DA SKLEEAL + P + D LWCLGNA TSH F T D +A E+F KAT FQ+AVD EP+
Sbjct: 61 DAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPA 120
Query: 64 NELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIF 123
N+LY+KSL++++KAPELHMEIH+ Q ++ +S++S + S+KKK SD YD+F
Sbjct: 121 NDLYRKSLDLSSKAPELHMEIHR-----QMASQASQAASSTSNTRQSRKKKDSDFWYDVF 175
Query: 124 GWVILAVGIVAWVGFAKSHMPPPPP 148
GWV+L VG+V WVG AKS+ PP P
Sbjct: 176 GWVVLGVGMVVWVGLAKSNAPPQAP 200
>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis
thaliana GN=TOM20-4 PE=1 SV=1
Length = 187
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 100/144 (69%), Gaps = 14/144 (9%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MIL+AI KL EAL++ P +HD LW +GNAH S FL+ DQ EA + F KA+ +FQ AV+E
Sbjct: 54 MILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 120
+P +ELY+KSL +A+KAPELH G + GPSS S AKT K+KK+S+ KY
Sbjct: 114 QPESELYRKSLTLASKAPELH------------TGGTAGPSSNS--AKTMKQKKTSEFKY 159
Query: 121 DIFGWVILAVGIVAWVGFAKSHMP 144
D+FGWVILA +VAW+ FA S P
Sbjct: 160 DVFGWVILASYVVAWISFANSQTP 183
>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis
thaliana GN=TOM20-1 PE=1 SV=1
Length = 188
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 94/140 (67%), Gaps = 3/140 (2%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
MI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD +A+ F A L+F AV +
Sbjct: 50 MIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQ 109
Query: 61 EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 120
+P N++Y KSLE+A KAP+LH HK+ L G T + K K KKSSD KY
Sbjct: 110 QPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSP---KVVKNKKSSDEKY 166
Query: 121 DIFGWVILAVGIVAWVGFAK 140
+ GWVILA+G+VA + F K
Sbjct: 167 IVMGWVILAIGVVACISFRK 186
>sp|A1WX31|DNAK_HALHL Chaperone protein DnaK OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=dnaK PE=3 SV=1
Length = 647
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 41 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGP 100
D K+ A +Q D E + + QK+ E+A KA EL + ++ G A G
Sbjct: 559 DAEKQEIESAISELEQVKDGEDKDAIEQKTQELATKAGELAQKAYQQAGGGDEASADAGA 618
Query: 101 SSTSSGAK 108
T+SG +
Sbjct: 619 GETASGEQ 626
>sp|Q7Q9J8|COQ4_ANOGA Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial
OS=Anopheles gambiae GN=AGAP005199 PE=3 SV=4
Length = 282
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60
+IL A S + A +V P RHD + CLG A E ++ ++T Q+ + E
Sbjct: 73 LILSAGSSV--AALVDPRRHDMIACLGETTGREAL------EKILHYMRSTEEGQRILVE 124
Query: 61 EPSNELYQKSLEVAAKAPE 79
+P +E K PE
Sbjct: 125 KPRINTRTVDMEALKKMPE 143
>sp|Q8N2E2|VWDE_HUMAN von Willebrand factor D and EGF domain-containing protein OS=Homo
sapiens GN=VWDE PE=2 SV=4
Length = 1590
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62
LD++S+ E AL C H S + L P+ D EY N TL + +++
Sbjct: 638 LDSVSRSEIAL----------GCKDLNHVSLSSLIPELDVTSEYINSDTLV--REINKHT 685
Query: 63 SNELYQKSLEVAAKAPELHMEIHKHGLGQQ 92
S E Y +L + K H+ + K GL Q
Sbjct: 686 SPEEYNLNLFLQEKK---HINLTKLGLNVQ 712
>sp|Q9QYM7|XPF_CRIGR DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2
SV=3
Length = 913
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 66 LYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLK 119
LY+K+ E +KA E+ + + K ++TM + P T + + S KK + K
Sbjct: 432 LYRKTFEKDSKAEEVWVNLRKGDGPKRTMKSDKRPKDTKNKERASTKKGAPKRK 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,824,590
Number of Sequences: 539616
Number of extensions: 2285431
Number of successful extensions: 11259
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11189
Number of HSP's gapped (non-prelim): 85
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)