Query 031849
Match_columns 152
No_of_seqs 149 out of 255
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06552 TOM20_plant: Plant sp 100.0 1E-61 2.3E-66 391.6 8.0 137 1-140 50-186 (186)
2 KOG0553 TPR repeat-containing 99.4 9.9E-13 2.1E-17 113.5 6.9 67 1-78 130-196 (304)
3 PF13414 TPR_11: TPR repeat; P 99.2 4E-11 8.8E-16 78.5 5.8 51 2-62 19-69 (69)
4 PF13432 TPR_16: Tetratricopep 99.2 5.8E-11 1.3E-15 77.3 6.2 53 2-65 13-65 (65)
5 PRK15359 type III secretion sy 99.1 6.3E-10 1.4E-14 84.3 8.3 53 2-65 40-92 (144)
6 PF14559 TPR_19: Tetratricopep 99.1 5.7E-10 1.2E-14 72.7 6.4 60 2-72 7-66 (68)
7 PRK15359 type III secretion sy 99.0 2.1E-09 4.6E-14 81.5 7.4 64 1-75 73-136 (144)
8 PF13371 TPR_9: Tetratricopept 98.9 4.3E-09 9.3E-14 69.4 7.5 62 1-73 10-71 (73)
9 KOG4626 O-linked N-acetylgluco 98.9 2.5E-09 5.3E-14 101.0 7.3 81 2-93 234-335 (966)
10 PRK11189 lipoprotein NlpI; Pro 98.9 6.9E-09 1.5E-13 86.7 7.9 70 2-82 80-163 (296)
11 TIGR02552 LcrH_SycD type III s 98.9 9.8E-09 2.1E-13 74.0 7.5 53 2-65 33-85 (135)
12 KOG4626 O-linked N-acetylgluco 98.8 1.6E-08 3.5E-13 95.6 8.2 80 2-92 302-402 (966)
13 PRK10370 formate-dependent nit 98.8 3.8E-08 8.3E-13 78.7 8.9 56 2-68 55-110 (198)
14 PLN03088 SGT1, suppressor of 98.8 3.4E-08 7.4E-13 85.3 9.0 53 2-65 18-70 (356)
15 PF00515 TPR_1: Tetratricopept 98.7 1.7E-08 3.6E-13 58.7 4.2 34 20-64 1-34 (34)
16 TIGR00990 3a0801s09 mitochondr 98.7 6.2E-08 1.3E-12 87.6 9.2 80 2-92 381-481 (615)
17 TIGR02552 LcrH_SycD type III s 98.7 6.1E-08 1.3E-12 69.8 7.4 67 2-79 67-133 (135)
18 PLN03088 SGT1, suppressor of 98.7 6.1E-08 1.3E-12 83.7 8.6 62 2-74 52-113 (356)
19 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 4.2E-08 9.2E-13 88.9 7.8 63 1-80 90-155 (453)
20 cd00189 TPR Tetratricopeptide 98.7 9.9E-08 2.1E-12 59.5 7.1 54 1-65 15-68 (100)
21 PRK15363 pathogenicity island 98.7 1.3E-07 2.8E-12 75.2 8.8 54 1-65 50-103 (157)
22 PF06552 TOM20_plant: Plant sp 98.6 8.9E-08 1.9E-12 78.2 7.3 111 2-115 7-158 (186)
23 PRK12370 invasion protein regu 98.6 1.5E-07 3.3E-12 84.9 9.3 53 2-65 354-406 (553)
24 PRK12370 invasion protein regu 98.6 9.6E-08 2.1E-12 86.2 7.6 71 2-83 320-404 (553)
25 PF07719 TPR_2: Tetratricopept 98.6 7.3E-08 1.6E-12 55.3 4.4 34 20-64 1-34 (34)
26 PRK10370 formate-dependent nit 98.6 1.4E-07 3.1E-12 75.4 7.0 55 2-65 89-144 (198)
27 KOG1126 DNA-binding cell divis 98.6 3.8E-08 8.2E-13 92.1 4.1 69 1-80 470-552 (638)
28 PRK11189 lipoprotein NlpI; Pro 98.6 1.6E-07 3.4E-12 78.6 7.2 54 1-65 113-166 (296)
29 PRK02603 photosystem I assembl 98.5 5.2E-07 1.1E-11 69.2 8.7 75 2-78 88-165 (172)
30 KOG0553 TPR repeat-containing 98.5 1.8E-07 3.9E-12 81.2 6.5 82 1-93 96-200 (304)
31 PF13431 TPR_17: Tetratricopep 98.5 8.2E-08 1.8E-12 57.7 3.0 33 8-51 1-33 (34)
32 TIGR00990 3a0801s09 mitochondr 98.5 6.4E-07 1.4E-11 81.1 8.9 70 2-82 347-430 (615)
33 PRK15363 pathogenicity island 98.4 8.4E-07 1.8E-11 70.7 7.4 61 1-72 84-144 (157)
34 CHL00033 ycf3 photosystem I as 98.4 1.3E-06 2.8E-11 66.5 8.1 64 2-65 88-154 (168)
35 PF13414 TPR_11: TPR repeat; P 98.4 4.3E-07 9.4E-12 59.3 4.6 37 18-65 1-37 (69)
36 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.6E-06 3.5E-11 59.9 7.7 52 2-64 18-72 (119)
37 PRK11447 cellulose synthase su 98.4 1E-06 2.2E-11 85.8 8.5 54 1-65 284-337 (1157)
38 TIGR02521 type_IV_pilW type IV 98.4 2.2E-06 4.7E-11 63.5 8.1 54 1-65 46-99 (234)
39 PRK02603 photosystem I assembl 98.4 1.6E-06 3.5E-11 66.5 7.4 57 1-68 50-109 (172)
40 CHL00033 ycf3 photosystem I as 98.3 2.4E-06 5.2E-11 65.1 7.9 55 1-66 50-107 (168)
41 KOG1173 Anaphase-promoting com 98.3 1.4E-06 3.1E-11 81.0 7.9 66 1-77 470-535 (611)
42 PF12895 Apc3: Anaphase-promot 98.3 5.8E-07 1.3E-11 61.5 3.9 53 1-65 4-58 (84)
43 PRK09782 bacteriophage N4 rece 98.3 1.3E-06 2.8E-11 85.3 7.5 53 2-65 625-677 (987)
44 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.2E-06 4.8E-11 59.2 6.7 61 1-72 54-117 (119)
45 TIGR03302 OM_YfiO outer membra 98.3 1.8E-06 3.9E-11 67.9 6.7 55 1-66 48-105 (235)
46 PRK09782 bacteriophage N4 rece 98.3 3E-06 6.4E-11 82.8 9.1 52 2-65 592-643 (987)
47 PF13181 TPR_8: Tetratricopept 98.3 1.1E-06 2.5E-11 50.6 3.6 34 20-64 1-34 (34)
48 cd00189 TPR Tetratricopeptide 98.3 4.5E-06 9.8E-11 51.9 6.4 51 2-63 50-100 (100)
49 PF13424 TPR_12: Tetratricopep 98.2 1.2E-06 2.7E-11 58.5 3.7 49 1-60 20-75 (78)
50 PF13428 TPR_14: Tetratricopep 98.2 3.6E-06 7.9E-11 52.1 5.3 41 20-71 1-41 (44)
51 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 2.6E-06 5.7E-11 77.4 6.4 60 14-84 69-146 (453)
52 PRK10153 DNA-binding transcrip 98.2 3.8E-06 8.2E-11 76.8 7.0 56 1-68 435-490 (517)
53 KOG0543 FKBP-type peptidyl-pro 98.2 6.4E-06 1.4E-10 73.9 8.2 57 2-69 273-329 (397)
54 PRK15174 Vi polysaccharide exp 98.1 8.9E-06 1.9E-10 75.4 8.7 33 2-34 228-260 (656)
55 PRK10049 pgaA outer membrane p 98.1 9.2E-06 2E-10 76.2 8.1 54 1-65 374-427 (765)
56 PRK15179 Vi polysaccharide bio 98.1 5.3E-06 1.2E-10 78.4 6.3 74 2-86 102-189 (694)
57 PRK11447 cellulose synthase su 98.1 9.7E-06 2.1E-10 79.1 8.2 55 2-67 367-421 (1157)
58 TIGR02917 PEP_TPR_lipo putativ 98.1 2.1E-05 4.6E-10 69.2 9.3 54 1-65 37-90 (899)
59 KOG1126 DNA-binding cell divis 98.1 8.3E-06 1.8E-10 76.7 6.8 54 2-66 505-558 (638)
60 TIGR02521 type_IV_pilW type IV 98.1 2.5E-05 5.4E-10 57.8 8.1 52 2-64 115-168 (234)
61 TIGR03302 OM_YfiO outer membra 98.1 1.8E-05 3.9E-10 62.2 7.7 69 1-72 85-156 (235)
62 PRK15174 Vi polysaccharide exp 98.1 1.5E-05 3.2E-10 74.0 8.1 55 1-66 91-145 (656)
63 PRK10803 tol-pal system protei 98.0 1.5E-05 3.3E-10 67.1 7.1 58 2-70 159-219 (263)
64 KOG1125 TPR repeat-containing 98.0 1.3E-05 2.7E-10 74.7 7.0 70 1-81 445-528 (579)
65 KOG0548 Molecular co-chaperone 98.0 1.9E-05 4E-10 73.1 7.4 72 2-84 374-459 (539)
66 PF13429 TPR_15: Tetratricopep 98.0 3.3E-05 7.1E-10 62.9 7.9 61 2-66 162-249 (280)
67 KOG1155 Anaphase-promoting com 98.0 2.5E-05 5.3E-10 72.0 7.4 52 3-65 381-432 (559)
68 TIGR02917 PEP_TPR_lipo putativ 97.9 5.5E-05 1.2E-09 66.6 9.2 54 2-66 752-805 (899)
69 PLN02789 farnesyltranstransfer 97.9 2.5E-05 5.5E-10 67.4 7.0 54 2-64 88-141 (320)
70 KOG4162 Predicted calmodulin-b 97.9 1.7E-05 3.6E-10 75.9 5.7 52 4-66 738-789 (799)
71 PRK11788 tetratricopeptide rep 97.9 3.6E-05 7.7E-10 64.1 7.0 52 2-64 196-247 (389)
72 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 5.1E-05 1.1E-09 50.3 6.0 45 21-76 2-46 (53)
73 KOG0624 dsRNA-activated protei 97.9 5.3E-05 1.2E-09 68.4 7.9 64 2-76 323-386 (504)
74 PLN02789 farnesyltranstransfer 97.9 3.6E-05 7.9E-10 66.4 6.6 53 2-65 124-176 (320)
75 PF13176 TPR_7: Tetratricopept 97.9 2E-05 4.2E-10 47.2 3.5 28 22-60 1-28 (36)
76 KOG0547 Translocase of outer m 97.9 4.1E-05 8.9E-10 71.0 7.2 52 3-65 377-428 (606)
77 smart00028 TPR Tetratricopepti 97.9 3.2E-05 6.9E-10 40.4 3.9 33 21-64 2-34 (34)
78 PRK10866 outer membrane biogen 97.9 6E-05 1.3E-09 62.4 7.5 60 1-71 47-114 (243)
79 PRK15179 Vi polysaccharide bio 97.8 6.3E-05 1.4E-09 71.3 8.4 54 1-65 135-188 (694)
80 COG5010 TadD Flp pilus assembl 97.8 5.7E-05 1.2E-09 64.5 7.3 61 2-73 116-176 (257)
81 PRK10049 pgaA outer membrane p 97.8 9.4E-05 2E-09 69.5 9.2 53 2-66 99-151 (765)
82 COG3063 PilF Tfp pilus assembl 97.8 7.4E-05 1.6E-09 63.5 7.2 53 2-65 51-103 (250)
83 PRK10803 tol-pal system protei 97.7 0.00016 3.5E-09 60.9 8.5 63 1-74 195-260 (263)
84 PF13429 TPR_15: Tetratricopep 97.7 0.00014 3.1E-09 59.1 7.9 71 2-83 126-198 (280)
85 PF13174 TPR_6: Tetratricopept 97.7 6.7E-05 1.5E-09 42.3 4.3 33 21-64 1-33 (33)
86 PRK10747 putative protoheme IX 97.7 0.00015 3.2E-09 63.1 8.4 66 2-78 310-375 (398)
87 COG3063 PilF Tfp pilus assembl 97.7 0.0001 2.2E-09 62.7 6.9 66 2-69 85-177 (250)
88 KOG2076 RNA polymerase III tra 97.7 0.00014 3E-09 70.7 8.3 59 2-64 155-240 (895)
89 PRK10153 DNA-binding transcrip 97.7 0.00012 2.7E-09 66.9 7.7 64 2-65 358-454 (517)
90 KOG1127 TPR repeat-containing 97.7 8.6E-05 1.9E-09 73.2 6.8 55 1-65 17-71 (1238)
91 TIGR00540 hemY_coli hemY prote 97.7 0.00019 4.1E-09 62.4 8.1 65 2-77 315-383 (409)
92 KOG1155 Anaphase-promoting com 97.7 0.00012 2.7E-09 67.5 7.0 74 2-86 346-440 (559)
93 KOG0547 Translocase of outer m 97.6 0.00013 2.9E-09 67.7 6.4 78 1-89 409-500 (606)
94 KOG1174 Anaphase-promoting com 97.6 0.00022 4.8E-09 65.5 7.7 35 43-77 483-517 (564)
95 COG4235 Cytochrome c biogenesi 97.6 0.00025 5.4E-09 61.4 7.6 59 2-71 138-196 (287)
96 cd05804 StaR_like StaR_like; a 97.6 0.00021 4.5E-09 59.0 6.5 52 2-64 130-181 (355)
97 PRK11788 tetratricopeptide rep 97.6 0.00055 1.2E-08 57.0 8.9 27 46-72 297-323 (389)
98 KOG1125 TPR repeat-containing 97.5 0.00019 4.1E-09 67.0 6.6 59 2-71 301-359 (579)
99 KOG3364 Membrane protein invol 97.5 0.001 2.2E-08 52.9 9.2 66 2-78 51-118 (149)
100 PRK11906 transcriptional regul 97.5 0.00045 9.9E-09 63.2 7.7 54 2-66 320-373 (458)
101 PRK15331 chaperone protein Sic 97.4 0.001 2.2E-08 53.6 8.8 73 2-86 53-142 (165)
102 PF12895 Apc3: Anaphase-promot 97.4 0.00013 2.9E-09 49.7 3.2 44 2-57 41-84 (84)
103 KOG3060 Uncharacterized conser 97.4 0.00052 1.1E-08 59.4 7.3 68 4-82 138-222 (289)
104 KOG0548 Molecular co-chaperone 97.4 0.00052 1.1E-08 63.7 7.5 72 2-73 18-112 (539)
105 PF13424 TPR_12: Tetratricopep 97.3 0.00026 5.6E-09 47.1 3.5 31 19-60 4-34 (78)
106 PRK11906 transcriptional regul 97.3 0.00059 1.3E-08 62.4 6.2 53 2-65 354-406 (458)
107 KOG0550 Molecular chaperone (D 97.3 0.00029 6.3E-09 64.3 4.2 71 2-83 185-281 (486)
108 PF14561 TPR_20: Tetratricopep 97.2 0.0034 7.4E-08 45.1 8.6 61 5-76 7-70 (90)
109 PRK14574 hmsH outer membrane p 97.2 0.0014 2.9E-08 63.5 8.3 56 1-67 117-172 (822)
110 PF03704 BTAD: Bacterial trans 97.2 0.0026 5.6E-08 47.0 8.1 65 2-70 78-145 (146)
111 KOG4234 TPR repeat-containing 97.2 0.0016 3.5E-08 55.4 7.6 59 2-71 150-208 (271)
112 PF13432 TPR_16: Tetratricopep 97.1 0.0013 2.9E-08 42.3 5.2 37 24-71 1-37 (65)
113 PF13428 TPR_14: Tetratricopep 97.1 0.00067 1.5E-08 41.8 3.3 28 1-28 16-43 (44)
114 PRK14720 transcript cleavage f 97.1 0.0012 2.5E-08 64.8 6.4 64 1-76 131-194 (906)
115 PF12688 TPR_5: Tetratrico pep 97.1 0.0051 1.1E-07 46.5 8.5 53 2-65 17-72 (120)
116 PRK15331 chaperone protein Sic 97.0 0.0019 4.2E-08 52.0 6.3 59 1-71 86-145 (165)
117 KOG3060 Uncharacterized conser 97.0 0.0033 7.1E-08 54.5 7.5 57 1-65 169-225 (289)
118 PF13374 TPR_10: Tetratricopep 96.9 0.0018 3.9E-08 37.8 4.0 30 20-60 2-31 (42)
119 cd05804 StaR_like StaR_like; a 96.9 0.0053 1.2E-07 50.6 8.2 63 2-65 59-148 (355)
120 KOG1128 Uncharacterized conser 96.9 0.0036 7.8E-08 60.2 7.6 76 2-88 501-580 (777)
121 PF13525 YfiO: Outer membrane 96.9 0.0035 7.6E-08 49.9 6.4 68 1-79 20-95 (203)
122 KOG1173 Anaphase-promoting com 96.9 0.0035 7.5E-08 59.0 7.3 56 2-68 430-492 (611)
123 COG4235 Cytochrome c biogenesi 96.8 0.0038 8.3E-08 54.1 7.0 56 2-65 172-227 (287)
124 PF13512 TPR_18: Tetratricopep 96.8 0.0075 1.6E-07 47.4 8.0 67 1-78 25-99 (142)
125 KOG4507 Uncharacterized conser 96.7 0.0041 8.9E-08 59.5 6.8 64 1-75 657-720 (886)
126 PF04733 Coatomer_E: Coatomer 96.7 0.0035 7.6E-08 53.4 5.8 56 2-67 217-272 (290)
127 KOG0550 Molecular chaperone (D 96.7 0.0032 6.8E-08 57.7 5.6 52 2-64 265-320 (486)
128 COG4785 NlpI Lipoprotein NlpI, 96.7 0.0028 6.1E-08 54.5 5.0 51 4-65 83-133 (297)
129 KOG1156 N-terminal acetyltrans 96.6 0.0078 1.7E-07 57.4 7.6 54 2-66 57-110 (700)
130 KOG2003 TPR repeat-containing 96.6 0.0032 6.9E-08 59.0 4.8 74 2-86 506-586 (840)
131 KOG4648 Uncharacterized conser 96.6 0.0052 1.1E-07 55.9 6.0 71 1-71 112-205 (536)
132 PRK14720 transcript cleavage f 96.5 0.0081 1.8E-07 59.0 7.2 69 4-83 100-181 (906)
133 KOG0624 dsRNA-activated protei 96.5 0.015 3.2E-07 53.0 8.2 78 2-79 54-154 (504)
134 KOG4555 TPR repeat-containing 96.4 0.0065 1.4E-07 48.9 5.3 51 2-63 59-109 (175)
135 PF14559 TPR_19: Tetratricopep 96.4 0.0061 1.3E-07 39.2 4.1 39 44-82 4-56 (68)
136 PF13371 TPR_9: Tetratricopept 96.3 0.0045 9.7E-08 40.4 3.1 22 44-65 8-29 (73)
137 KOG3824 Huntingtin interacting 96.2 0.0081 1.7E-07 54.1 5.0 54 2-66 132-185 (472)
138 PRK14574 hmsH outer membrane p 96.2 0.021 4.5E-07 55.5 8.0 22 45-66 116-137 (822)
139 PRK10866 outer membrane biogen 96.1 0.03 6.4E-07 46.4 7.8 71 1-71 84-164 (243)
140 COG1729 Uncharacterized protei 96.1 0.021 4.5E-07 49.1 7.0 66 2-88 157-225 (262)
141 PF09976 TPR_21: Tetratricopep 96.1 0.024 5.1E-07 42.4 6.4 44 2-56 64-110 (145)
142 KOG1129 TPR repeat-containing 96.1 0.0071 1.5E-07 54.7 4.1 63 2-75 374-439 (478)
143 KOG4234 TPR repeat-containing 96.1 0.02 4.3E-07 48.9 6.6 54 1-65 110-168 (271)
144 PF09976 TPR_21: Tetratricopep 96.0 0.07 1.5E-06 39.8 8.7 53 3-66 28-83 (145)
145 KOG1840 Kinesin light chain [C 95.9 0.02 4.4E-07 53.0 6.6 81 2-86 257-368 (508)
146 KOG4162 Predicted calmodulin-b 95.9 0.026 5.6E-07 54.7 7.4 70 3-83 461-545 (799)
147 KOG1129 TPR repeat-containing 95.9 0.033 7.1E-07 50.5 7.5 89 1-92 238-373 (478)
148 PF14938 SNAP: Soluble NSF att 95.9 0.004 8.7E-08 51.8 1.6 72 2-83 90-167 (282)
149 PRK10747 putative protoheme IX 95.8 0.045 9.8E-07 47.7 8.1 54 2-66 134-188 (398)
150 PF13525 YfiO: Outer membrane 95.8 0.039 8.5E-07 43.8 7.1 71 1-74 57-133 (203)
151 COG4783 Putative Zn-dependent 95.8 0.034 7.4E-07 51.4 7.3 54 2-66 356-409 (484)
152 PF00515 TPR_1: Tetratricopept 95.8 0.0063 1.4E-07 34.8 1.7 19 1-19 16-34 (34)
153 COG0457 NrfG FOG: TPR repeat [ 95.8 0.05 1.1E-06 37.1 6.4 51 2-63 183-234 (291)
154 PF13512 TPR_18: Tetratricopep 95.8 0.041 8.9E-07 43.3 6.8 70 1-70 62-138 (142)
155 KOG2076 RNA polymerase III tra 95.7 0.042 9.1E-07 53.9 8.0 51 1-62 222-272 (895)
156 PF12569 NARP1: NMDA receptor- 95.7 0.047 1E-06 50.5 7.9 64 1-75 19-82 (517)
157 KOG2002 TPR-containing nuclear 95.6 0.037 7.9E-07 54.9 7.3 58 1-66 214-271 (1018)
158 PF09295 ChAPs: ChAPs (Chs5p-A 95.6 0.046 9.9E-07 49.1 7.4 68 2-80 216-297 (395)
159 PF12688 TPR_5: Tetratrico pep 95.6 0.083 1.8E-06 39.9 7.7 63 1-76 53-118 (120)
160 TIGR00540 hemY_coli hemY prote 95.5 0.08 1.7E-06 46.1 8.5 51 2-63 169-219 (409)
161 KOG1127 TPR repeat-containing 95.5 0.047 1E-06 54.7 7.6 78 2-88 53-130 (1238)
162 COG0457 NrfG FOG: TPR repeat [ 95.4 0.079 1.7E-06 36.1 6.5 51 2-63 111-162 (291)
163 COG5010 TadD Flp pilus assembl 95.4 0.08 1.7E-06 45.5 7.8 61 2-73 150-210 (257)
164 PF10373 EST1_DNA_bind: Est1 D 95.4 0.066 1.4E-06 42.9 7.0 61 5-76 1-62 (278)
165 COG2956 Predicted N-acetylgluc 95.4 0.047 1E-06 49.0 6.6 52 2-64 196-247 (389)
166 KOG1174 Anaphase-promoting com 95.4 0.036 7.9E-07 51.3 6.0 81 1-92 419-512 (564)
167 PF07719 TPR_2: Tetratricopept 95.4 0.016 3.5E-07 32.6 2.4 19 1-19 16-34 (34)
168 KOG0543 FKBP-type peptidyl-pro 95.3 0.032 7E-07 50.5 5.4 53 2-65 224-291 (397)
169 PF12569 NARP1: NMDA receptor- 95.1 0.061 1.3E-06 49.8 6.6 53 1-64 209-261 (517)
170 PF02259 FAT: FAT domain; Int 95.1 0.083 1.8E-06 43.4 6.8 69 2-71 274-348 (352)
171 COG3071 HemY Uncharacterized e 95.1 0.1 2.2E-06 47.4 7.7 66 5-81 313-378 (400)
172 KOG2002 TPR-containing nuclear 94.9 0.068 1.5E-06 53.1 6.6 53 2-65 323-376 (1018)
173 PF04733 Coatomer_E: Coatomer 94.6 0.13 2.8E-06 43.9 6.9 76 2-88 183-262 (290)
174 PF13431 TPR_17: Tetratricopep 94.6 0.034 7.3E-07 33.0 2.4 20 53-72 1-20 (34)
175 KOG0376 Serine-threonine phosp 94.6 0.059 1.3E-06 49.8 5.0 62 2-74 54-115 (476)
176 KOG4642 Chaperone-dependent E3 94.5 0.16 3.5E-06 44.1 7.3 75 2-87 26-104 (284)
177 KOG1128 Uncharacterized conser 94.5 0.13 2.9E-06 49.8 7.4 52 2-64 535-586 (777)
178 COG4976 Predicted methyltransf 94.5 0.069 1.5E-06 46.2 4.9 52 2-64 11-62 (287)
179 smart00745 MIT Microtubule Int 94.3 0.27 5.8E-06 33.4 6.7 66 2-86 5-74 (77)
180 PRK10941 hypothetical protein; 94.2 0.29 6.2E-06 41.8 8.2 57 2-69 197-253 (269)
181 KOG2003 TPR repeat-containing 94.1 0.2 4.4E-06 47.3 7.6 63 3-65 575-660 (840)
182 KOG4340 Uncharacterized conser 94.0 0.18 3.9E-06 45.5 6.6 56 2-68 26-81 (459)
183 COG4783 Putative Zn-dependent 93.8 0.23 5E-06 46.0 7.3 59 2-71 322-380 (484)
184 PF09295 ChAPs: ChAPs (Chs5p-A 93.8 0.12 2.6E-06 46.4 5.4 53 1-65 249-301 (395)
185 KOG0376 Serine-threonine phosp 93.7 0.099 2.1E-06 48.4 4.7 53 2-65 20-72 (476)
186 KOG1840 Kinesin light chain [C 93.6 0.1 2.2E-06 48.4 4.7 50 1-61 214-271 (508)
187 KOG4648 Uncharacterized conser 93.4 0.053 1.2E-06 49.5 2.4 33 23-66 100-132 (536)
188 KOG4642 Chaperone-dependent E3 92.9 0.14 3E-06 44.5 4.1 48 2-60 60-107 (284)
189 PF13281 DUF4071: Domain of un 92.7 0.55 1.2E-05 42.2 7.8 85 2-88 198-286 (374)
190 PF10300 DUF3808: Protein of u 92.6 0.37 8E-06 43.6 6.6 52 1-63 282-337 (468)
191 COG2956 Predicted N-acetylgluc 92.5 0.47 1E-05 42.8 7.0 84 3-86 52-163 (389)
192 PF07720 TPR_3: Tetratricopept 92.3 0.39 8.4E-06 29.3 4.4 33 21-64 2-36 (36)
193 KOG1308 Hsp70-interacting prot 92.2 0.03 6.5E-07 50.3 -0.9 50 4-64 166-215 (377)
194 cd02678 MIT_VPS4 MIT: domain c 92.1 1 2.2E-05 30.9 7.0 46 1-65 2-47 (75)
195 PF04212 MIT: MIT (microtubule 91.9 0.8 1.7E-05 30.6 6.1 46 1-65 1-46 (69)
196 PF13181 TPR_8: Tetratricopept 91.6 0.13 2.9E-06 29.0 1.7 19 1-19 16-34 (34)
197 PF04781 DUF627: Protein of un 91.6 1.2 2.6E-05 33.9 7.3 62 3-64 13-77 (111)
198 KOG1586 Protein required for f 91.5 0.72 1.6E-05 40.2 6.8 78 2-89 89-185 (288)
199 PF12862 Apc5: Anaphase-promot 91.5 0.8 1.7E-05 32.3 6.0 52 2-64 14-74 (94)
200 PF08238 Sel1: Sel1 repeat; I 91.4 0.76 1.7E-05 26.4 4.9 36 20-61 1-38 (39)
201 cd02656 MIT MIT: domain contai 91.3 1.5 3.2E-05 29.8 7.0 46 1-65 2-47 (75)
202 KOG0545 Aryl-hydrocarbon recep 91.0 0.61 1.3E-05 41.0 5.9 52 2-64 246-297 (329)
203 PF10516 SHNi-TPR: SHNi-TPR; 90.9 0.39 8.4E-06 29.8 3.4 31 20-61 1-31 (38)
204 KOG1156 N-terminal acetyltrans 90.9 0.85 1.8E-05 44.0 7.2 53 1-64 90-142 (700)
205 PF03704 BTAD: Bacterial trans 90.8 0.98 2.1E-05 33.2 6.1 46 44-89 75-127 (146)
206 COG4785 NlpI Lipoprotein NlpI, 90.7 0.27 5.8E-06 42.6 3.4 53 2-65 115-167 (297)
207 PF14938 SNAP: Soluble NSF att 90.6 0.57 1.2E-05 38.9 5.3 54 1-65 130-189 (282)
208 PTZ00441 sporozoite surface pr 90.6 0.14 3.1E-06 48.4 1.8 35 109-143 501-535 (576)
209 COG1729 Uncharacterized protei 90.5 1.7 3.6E-05 37.5 8.1 62 2-74 194-258 (262)
210 KOG1308 Hsp70-interacting prot 90.5 0.4 8.8E-06 43.2 4.5 53 2-65 130-182 (377)
211 PF09986 DUF2225: Uncharacteri 90.4 0.98 2.1E-05 37.1 6.4 61 2-74 141-207 (214)
212 COG4105 ComL DNA uptake lipopr 90.4 1.4 3E-05 37.9 7.4 60 2-72 50-117 (254)
213 PF08424 NRDE-2: NRDE-2, neces 90.4 2.2 4.8E-05 36.5 8.8 60 6-65 5-65 (321)
214 COG3629 DnrI DNA-binding trans 90.2 1.8 3.9E-05 37.6 8.0 77 2-82 169-245 (280)
215 PLN03081 pentatricopeptide (PP 89.9 0.65 1.4E-05 43.1 5.5 49 2-61 510-558 (697)
216 smart00671 SEL1 Sel1-like repe 89.7 0.69 1.5E-05 26.1 3.6 35 20-61 1-35 (36)
217 KOG4555 TPR repeat-containing 89.7 2.9 6.4E-05 33.9 8.3 71 2-76 93-173 (175)
218 smart00028 TPR Tetratricopepti 89.5 0.41 8.8E-06 24.0 2.4 19 1-19 16-34 (34)
219 KOG1130 Predicted G-alpha GTPa 89.3 0.29 6.2E-06 45.8 2.6 47 2-59 211-263 (639)
220 COG4105 ComL DNA uptake lipopr 89.2 1.7 3.6E-05 37.4 7.0 63 1-66 86-151 (254)
221 KOG0551 Hsp90 co-chaperone CNS 89.0 1.8 3.8E-05 39.3 7.3 47 4-61 137-183 (390)
222 cd02683 MIT_1 MIT: domain cont 88.7 2.9 6.2E-05 29.3 6.8 64 2-84 3-70 (77)
223 PLN03218 maturation of RBCL 1; 88.4 3.7 8E-05 41.3 9.8 64 2-76 595-661 (1060)
224 PLN03081 pentatricopeptide (PP 88.3 1.4 2.9E-05 41.0 6.4 61 2-76 376-438 (697)
225 KOG1130 Predicted G-alpha GTPa 87.9 0.66 1.4E-05 43.4 4.0 48 2-60 291-344 (639)
226 cd02681 MIT_calpain7_1 MIT: do 87.6 4.4 9.6E-05 28.6 7.3 62 3-83 4-70 (76)
227 cd02680 MIT_calpain7_2 MIT: do 87.3 0.97 2.1E-05 32.0 3.7 15 45-59 20-34 (75)
228 PLN03077 Protein ECB2; Provisi 87.1 2.5 5.4E-05 40.2 7.5 55 2-71 540-596 (857)
229 KOG2471 TPR repeat-containing 86.1 1.1 2.4E-05 42.6 4.5 62 2-74 299-379 (696)
230 PF07721 TPR_4: Tetratricopept 86.1 1 2.2E-05 24.9 2.7 25 21-56 2-26 (26)
231 cd02682 MIT_AAA_Arch MIT: doma 85.8 4.1 9E-05 28.9 6.3 45 3-66 4-48 (75)
232 cd02679 MIT_spastin MIT: domai 85.4 1.3 2.9E-05 31.6 3.7 36 44-79 2-43 (79)
233 PLN03218 maturation of RBCL 1; 85.0 5.6 0.00012 40.0 9.0 31 46-76 734-766 (1060)
234 PRK04841 transcriptional regul 83.6 2 4.4E-05 40.3 5.1 54 2-66 707-766 (903)
235 KOG0495 HAT repeat protein [RN 83.5 2.5 5.5E-05 41.5 5.7 88 2-91 667-778 (913)
236 PF05843 Suf: Suppressor of fo 83.4 3.8 8.2E-05 34.3 6.2 55 5-70 55-113 (280)
237 PLN03077 Protein ECB2; Provisi 83.4 3.1 6.8E-05 39.5 6.3 47 2-59 673-719 (857)
238 PF12309 KBP_C: KIF-1 binding 83.2 4.5 9.7E-05 36.1 6.8 62 3-66 266-344 (371)
239 KOG3081 Vesicle coat complex C 82.8 7.8 0.00017 34.2 8.0 33 2-34 223-255 (299)
240 cd02677 MIT_SNX15 MIT: domain 82.7 4.6 0.0001 28.2 5.5 45 1-64 2-46 (75)
241 KOG2396 HAT (Half-A-TPR) repea 82.4 5.3 0.00011 37.9 7.2 54 3-66 122-175 (568)
242 PF04910 Tcf25: Transcriptiona 81.8 4.8 0.0001 35.5 6.5 46 10-59 30-75 (360)
243 KOG1310 WD40 repeat protein [G 81.8 2 4.4E-05 41.3 4.3 64 4-78 429-492 (758)
244 PF04184 ST7: ST7 protein; In 81.6 3.5 7.5E-05 38.9 5.7 91 2-93 275-388 (539)
245 KOG4340 Uncharacterized conser 81.4 4.2 9.2E-05 36.9 6.0 48 1-59 159-206 (459)
246 KOG0551 Hsp90 co-chaperone CNS 80.7 8.2 0.00018 35.1 7.5 53 2-65 97-153 (390)
247 KOG1550 Extracellular protein 80.7 5.3 0.00011 36.9 6.6 62 2-71 265-333 (552)
248 KOG0546 HSP90 co-chaperone CPR 79.4 1.6 3.5E-05 39.4 2.7 59 5-74 294-352 (372)
249 KOG0739 AAA+-type ATPase [Post 79.2 13 0.00029 33.8 8.3 68 2-88 7-79 (439)
250 cd02684 MIT_2 MIT: domain cont 79.2 10 0.00022 26.3 6.2 44 2-64 3-46 (75)
251 PF09613 HrpB1_HrpK: Bacterial 79.2 15 0.00033 29.5 8.0 55 2-67 26-80 (160)
252 PF04184 ST7: ST7 protein; In 79.0 2.5 5.3E-05 39.9 3.9 54 3-62 185-238 (539)
253 KOG3785 Uncharacterized conser 78.8 8.3 0.00018 35.8 7.1 58 2-70 167-224 (557)
254 PRK04841 transcriptional regul 78.6 6 0.00013 37.2 6.3 48 2-60 468-520 (903)
255 smart00299 CLH Clathrin heavy 78.5 6.4 0.00014 28.7 5.3 103 2-126 23-135 (140)
256 KOG2053 Mitochondrial inherita 78.5 7.7 0.00017 38.8 7.2 21 45-65 91-111 (932)
257 PF14853 Fis1_TPR_C: Fis1 C-te 78.1 2.5 5.5E-05 27.8 2.7 28 1-28 16-43 (53)
258 COG4700 Uncharacterized protei 77.9 5 0.00011 34.3 5.0 44 4-59 74-117 (251)
259 COG2912 Uncharacterized conser 77.6 8.1 0.00018 33.5 6.4 54 2-66 197-250 (269)
260 KOG0529 Protein geranylgeranyl 77.5 13 0.00027 34.4 7.8 71 2-81 91-165 (421)
261 TIGR03504 FimV_Cterm FimV C-te 77.0 9.6 0.00021 24.2 5.1 41 23-75 2-42 (44)
262 KOG0495 HAT repeat protein [RN 76.7 10 0.00022 37.4 7.3 46 8-64 805-850 (913)
263 PF09986 DUF2225: Uncharacteri 76.6 15 0.00033 30.1 7.5 60 2-63 93-157 (214)
264 COG4455 ImpE Protein of avirul 76.1 14 0.0003 32.1 7.3 61 2-73 17-81 (273)
265 PF11846 DUF3366: Domain of un 75.9 19 0.00041 28.1 7.6 51 2-64 127-177 (193)
266 PF04781 DUF627: Protein of un 75.4 7.5 0.00016 29.6 5.0 48 3-61 61-108 (111)
267 KOG2376 Signal recognition par 74.2 8.8 0.00019 37.0 6.1 33 1-33 27-59 (652)
268 PF10300 DUF3808: Protein of u 74.1 7.1 0.00015 35.5 5.4 49 2-61 249-297 (468)
269 cd02682 MIT_AAA_Arch MIT: doma 73.8 2.5 5.5E-05 30.0 2.0 17 43-59 18-34 (75)
270 PF08424 NRDE-2: NRDE-2, neces 73.8 15 0.00033 31.5 7.1 53 2-65 47-99 (321)
271 PF05843 Suf: Suppressor of fo 72.9 13 0.00029 31.1 6.4 54 2-65 17-70 (280)
272 smart00386 HAT HAT (Half-A-TPR 72.9 10 0.00023 20.1 4.0 21 46-66 2-22 (33)
273 PF10579 Rapsyn_N: Rapsyn N-te 72.7 20 0.00044 25.9 6.4 50 2-59 22-71 (80)
274 PF11044 TMEMspv1-c74-12: Plec 72.5 3.6 7.7E-05 27.2 2.2 14 126-139 11-24 (49)
275 COG3947 Response regulator con 72.5 14 0.0003 33.3 6.6 61 2-66 295-355 (361)
276 COG5191 Uncharacterized conser 72.4 3.5 7.5E-05 37.5 2.9 55 1-66 122-177 (435)
277 PF12753 Nro1: Nuclear pore co 72.3 11 0.00023 34.6 6.0 68 2-73 334-402 (404)
278 KOG1585 Protein required for f 71.4 13 0.00028 32.8 6.1 72 2-84 9-104 (308)
279 cd02679 MIT_spastin MIT: domai 70.5 29 0.00063 24.7 6.8 42 2-62 5-46 (79)
280 COG0790 FOG: TPR repeat, SEL1 70.3 20 0.00044 29.1 6.8 52 2-63 93-145 (292)
281 KOG1941 Acetylcholine receptor 70.1 9.1 0.0002 35.5 5.1 52 21-83 123-194 (518)
282 COG4700 Uncharacterized protei 69.3 27 0.00058 29.9 7.3 70 2-92 105-174 (251)
283 PF11732 Thoc2: Transcription- 69.3 2.5 5.4E-05 30.2 1.1 15 114-128 36-50 (77)
284 PF13281 DUF4071: Domain of un 69.3 19 0.00041 32.5 6.9 62 2-64 242-338 (374)
285 KOG1585 Protein required for f 68.6 10 0.00022 33.4 4.9 29 2-31 47-75 (308)
286 COG0790 FOG: TPR repeat, SEL1 68.3 22 0.00048 28.9 6.6 58 3-69 172-229 (292)
287 cd02680 MIT_calpain7_2 MIT: do 68.0 5.9 0.00013 28.0 2.7 33 46-79 2-34 (75)
288 KOG2376 Signal recognition par 67.8 9.7 0.00021 36.7 4.9 43 2-56 474-516 (652)
289 COG2976 Uncharacterized protei 67.2 22 0.00048 29.9 6.4 30 43-73 171-200 (207)
290 smart00745 MIT Microtubule Int 66.3 5.9 0.00013 26.7 2.4 37 46-83 4-40 (77)
291 cd02681 MIT_calpain7_1 MIT: do 66.1 5.4 0.00012 28.1 2.3 17 44-60 19-35 (76)
292 COG3071 HemY Uncharacterized e 66.0 17 0.00037 33.3 5.9 45 2-58 344-388 (400)
293 KOG3785 Uncharacterized conser 65.9 26 0.00056 32.7 7.1 68 2-80 38-120 (557)
294 cd02683 MIT_1 MIT: domain cont 65.7 5.6 0.00012 27.9 2.3 14 49-62 5-18 (77)
295 COG3914 Spy Predicted O-linked 65.5 33 0.00071 33.1 7.9 52 3-64 84-135 (620)
296 PF09797 NatB_MDM20: N-acetylt 65.0 20 0.00042 31.0 6.0 33 2-34 199-231 (365)
297 KOG1941 Acetylcholine receptor 64.8 9.9 0.00021 35.3 4.2 51 2-63 138-194 (518)
298 COG3118 Thioredoxin domain-con 64.8 40 0.00086 29.9 7.8 59 6-75 222-283 (304)
299 cd02678 MIT_VPS4 MIT: domain c 64.7 6.6 0.00014 26.9 2.5 34 47-81 3-36 (75)
300 KOG0545 Aryl-hydrocarbon recep 64.5 31 0.00066 30.6 7.0 43 44-86 243-299 (329)
301 KOG2796 Uncharacterized conser 64.3 14 0.0003 33.1 4.9 76 2-88 268-347 (366)
302 KOG3081 Vesicle coat complex C 63.8 40 0.00086 29.9 7.6 61 3-74 190-250 (299)
303 cd02677 MIT_SNX15 MIT: domain 63.4 8.4 0.00018 26.9 2.8 36 46-82 2-37 (75)
304 PF07079 DUF1347: Protein of u 63.4 37 0.0008 32.2 7.7 60 2-76 478-541 (549)
305 PF04212 MIT: MIT (microtubule 63.1 5.2 0.00011 26.6 1.7 15 48-62 3-17 (69)
306 COG3118 Thioredoxin domain-con 63.1 30 0.00065 30.7 6.8 33 2-34 150-182 (304)
307 KOG4279 Serine/threonine prote 62.4 14 0.00031 37.2 5.0 88 3-92 260-351 (1226)
308 KOG4814 Uncharacterized conser 62.0 34 0.00073 33.9 7.4 56 2-68 370-431 (872)
309 KOG2610 Uncharacterized conser 58.4 19 0.00041 33.3 4.8 33 2-34 191-223 (491)
310 KOG1070 rRNA processing protei 57.8 40 0.00088 35.9 7.5 31 1-31 1473-1504(1710)
311 PF10814 DUF2562: Protein of u 56.6 2.6 5.6E-05 33.1 -0.8 25 127-151 101-125 (133)
312 KOG1586 Protein required for f 56.5 56 0.0012 28.7 7.2 62 1-71 129-194 (288)
313 PF02259 FAT: FAT domain; Int 55.5 60 0.0013 26.5 7.0 23 44-66 271-293 (352)
314 PF10602 RPN7: 26S proteasome 55.0 19 0.0004 28.5 3.8 34 20-64 36-69 (177)
315 KOG0530 Protein farnesyltransf 54.9 1.1E+02 0.0025 27.2 8.9 79 3-92 60-143 (318)
316 PF11753 DUF3310: Protein of u 54.5 12 0.00026 25.1 2.3 47 4-56 14-60 (60)
317 KOG1464 COP9 signalosome, subu 54.2 48 0.001 30.0 6.6 59 2-64 43-105 (440)
318 PRK05077 frsA fermentation/res 54.1 65 0.0014 28.6 7.5 59 22-80 100-163 (414)
319 cd09246 BRO1_Alix_like_1 Prote 54.0 11 0.00025 32.9 2.7 40 19-58 110-154 (353)
320 cd09244 BRO1_Rhophilin Protein 54.0 10 0.00022 33.7 2.4 38 18-57 104-141 (350)
321 cd02656 MIT MIT: domain contai 51.2 15 0.00033 24.7 2.4 33 47-80 3-35 (75)
322 PF09548 Spore_III_AB: Stage I 50.4 33 0.00072 26.9 4.6 53 2-59 89-141 (170)
323 PF13226 DUF4034: Domain of un 50.4 75 0.0016 27.5 7.1 62 5-66 62-134 (277)
324 cd09239 BRO1_HD-PTP_like Prote 50.0 14 0.0003 32.7 2.6 41 19-59 113-158 (361)
325 PF03097 BRO1: BRO1-like domai 49.6 11 0.00024 32.4 1.8 41 20-60 107-152 (377)
326 KOG1550 Extracellular protein 49.1 27 0.00057 32.4 4.4 52 2-64 491-542 (552)
327 PF08780 NTase_sub_bind: Nucle 48.8 27 0.00059 26.3 3.7 48 45-92 4-54 (124)
328 PF15100 TMEM187: TMEM187 prot 48.1 15 0.00034 31.5 2.5 26 115-140 77-102 (242)
329 KOG4507 Uncharacterized conser 48.0 38 0.00082 33.4 5.2 72 4-86 625-718 (886)
330 cd02684 MIT_2 MIT: domain cont 47.4 20 0.00043 24.9 2.6 16 47-62 3-18 (75)
331 cd09242 BRO1_ScBro1_like Prote 47.3 14 0.0003 32.3 2.1 37 19-57 106-142 (348)
332 PF06936 Selenoprotein_S: Sele 47.3 6.3 0.00014 32.4 0.0 18 123-140 36-53 (190)
333 cd00922 Cyt_c_Oxidase_IV Cytoc 46.6 26 0.00057 27.1 3.4 31 117-148 73-105 (136)
334 PF11601 Shal-type: Shal-type 46.3 5 0.00011 23.8 -0.5 24 122-145 3-27 (28)
335 PF11169 DUF2956: Protein of u 45.8 16 0.00034 27.7 1.9 16 121-139 83-98 (103)
336 PRK10941 hypothetical protein; 45.7 33 0.00072 29.3 4.1 32 23-65 184-215 (269)
337 TIGR02561 HrpB1_HrpK type III 45.3 1.1E+02 0.0025 24.5 6.9 72 2-85 26-101 (153)
338 cd09248 BRO1_Rhophilin_1 Prote 45.1 18 0.0004 32.8 2.6 37 19-57 105-141 (384)
339 PF11460 DUF3007: Protein of u 45.1 16 0.00035 27.7 1.9 12 126-137 40-51 (104)
340 COG0182 Predicted translation 44.8 37 0.00081 30.6 4.4 70 3-89 74-144 (346)
341 PRK15374 pathogenicity island 44.3 17 0.00036 34.8 2.3 16 121-136 319-334 (593)
342 PF11587 Prion_bPrPp: Major pr 43.6 14 0.00031 22.1 1.1 20 121-141 5-26 (29)
343 KOG4449 Translocase of outer m 43.3 18 0.00039 24.4 1.7 19 123-145 24-42 (53)
344 KOG2008 BTK-associated SH3-dom 43.1 1.9E+02 0.0042 26.4 8.6 78 3-96 161-239 (426)
345 TIGR01987 HI0074 nucleotidyltr 43.1 57 0.0012 24.8 4.7 48 45-92 3-52 (123)
346 PF09670 Cas_Cas02710: CRISPR- 42.4 78 0.0017 28.1 6.1 50 2-60 147-198 (379)
347 PF08631 SPO22: Meiosis protei 41.9 46 0.001 27.7 4.4 49 2-60 9-65 (278)
348 KOG3807 Predicted membrane pro 41.7 1.1E+02 0.0024 28.4 7.0 62 4-80 202-263 (556)
349 PF01535 PPR: PPR repeat; Int 41.5 53 0.0012 17.2 3.3 27 23-60 3-29 (31)
350 PF14863 Alkyl_sulf_dimr: Alky 41.3 87 0.0019 24.4 5.6 34 2-35 86-119 (141)
351 KOG3824 Huntingtin interacting 41.2 40 0.00087 30.9 4.1 23 44-66 129-151 (472)
352 PHA01080 hypothetical protein 41.2 26 0.00056 25.4 2.3 20 122-141 56-76 (80)
353 KOG1310 WD40 repeat protein [G 41.2 81 0.0017 30.8 6.2 55 3-65 391-445 (758)
354 PF00244 14-3-3: 14-3-3 protei 41.1 1.1E+02 0.0023 25.4 6.4 63 4-67 96-167 (236)
355 PF04888 SseC: Secretion syste 41.1 25 0.00054 29.7 2.7 20 117-136 56-75 (306)
356 KOG2997 F-box protein FBX9 [Ge 40.6 26 0.00056 31.8 2.8 22 44-65 32-53 (366)
357 PF13041 PPR_2: PPR repeat fam 40.6 83 0.0018 19.0 5.9 42 22-74 5-48 (50)
358 cd09241 BRO1_ScRim20-like Prot 39.5 23 0.0005 30.9 2.3 40 20-59 106-150 (355)
359 PF11207 DUF2989: Protein of u 39.3 1.3E+02 0.0028 25.2 6.6 34 19-64 140-173 (203)
360 COG3629 DnrI DNA-binding trans 39.1 94 0.002 27.0 5.9 32 44-75 166-198 (280)
361 PRK08307 stage III sporulation 38.9 66 0.0014 25.5 4.6 53 2-59 90-142 (171)
362 PF10345 Cohesin_load: Cohesin 38.8 89 0.0019 29.1 6.1 41 19-70 403-451 (608)
363 cd09249 BRO1_Rhophilin_2 Prote 38.7 16 0.00035 33.2 1.2 17 19-35 105-121 (385)
364 cd09247 BRO1_Alix_like_2 Prote 38.2 33 0.00072 29.9 3.1 40 20-59 113-155 (346)
365 smart00101 14_3_3 14-3-3 homol 38.0 1.6E+02 0.0036 24.9 7.1 63 4-67 98-169 (244)
366 PF10345 Cohesin_load: Cohesin 37.9 1E+02 0.0022 28.7 6.3 54 2-65 37-94 (608)
367 cd09240 BRO1_Alix Protein-inte 37.8 28 0.00061 30.3 2.6 41 19-59 118-163 (346)
368 PF13446 RPT: A repeated domai 37.8 50 0.0011 21.5 3.3 30 48-77 20-50 (62)
369 PF10855 DUF2648: Protein of u 36.4 28 0.0006 21.4 1.6 15 126-140 6-20 (33)
370 PF02038 ATP1G1_PLM_MAT8: ATP1 36.2 40 0.00086 22.5 2.5 8 115-122 4-11 (50)
371 PF01239 PPTA: Protein prenylt 36.2 81 0.0018 17.6 4.0 28 4-31 1-28 (31)
372 PF09753 Use1: Membrane fusion 35.6 33 0.00072 28.4 2.6 17 122-138 228-244 (251)
373 KOG2053 Mitochondrial inherita 35.1 1.2E+02 0.0026 30.8 6.6 53 2-66 93-145 (932)
374 PF10579 Rapsyn_N: Rapsyn N-te 35.1 62 0.0013 23.4 3.5 22 45-66 20-41 (80)
375 PF14155 DUF4307: Domain of un 34.8 36 0.00078 25.3 2.4 20 126-145 14-33 (112)
376 cd09034 BRO1_Alix_like Protein 34.8 46 0.00099 28.3 3.3 41 19-59 110-156 (345)
377 PF12968 DUF3856: Domain of Un 34.6 1.6E+02 0.0035 23.5 6.1 60 1-64 24-95 (144)
378 PF02936 COX4: Cytochrome c ox 34.3 33 0.00072 26.8 2.2 29 118-146 73-102 (142)
379 KOG2796 Uncharacterized conser 33.7 1.7E+02 0.0037 26.4 6.7 62 3-68 194-289 (366)
380 PF14863 Alkyl_sulf_dimr: Alky 33.6 1.3E+02 0.0029 23.3 5.5 28 44-71 83-110 (141)
381 cd09245 BRO1_UmRIM23-like Prot 33.5 33 0.00072 31.1 2.4 17 20-36 117-133 (413)
382 PF12854 PPR_1: PPR repeat 33.5 88 0.0019 18.0 3.5 25 21-56 8-32 (34)
383 KOG3386 Copper transporter [In 32.6 34 0.00073 27.2 2.1 18 123-140 120-137 (155)
384 TIGR02833 spore_III_AB stage I 32.4 93 0.002 24.6 4.5 53 2-59 89-141 (170)
385 KOG2581 26S proteasome regulat 32.0 55 0.0012 30.7 3.5 34 20-64 247-280 (493)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 31.7 1.4E+02 0.003 22.4 5.1 46 4-58 81-126 (126)
387 TIGR00756 PPR pentatricopeptid 31.5 85 0.0018 16.4 3.6 16 45-60 14-29 (35)
388 KOG0890 Protein kinase of the 31.0 1.7E+02 0.0038 32.7 7.3 24 43-66 1461-1484(2382)
389 PF10373 EST1_DNA_bind: Est1 D 30.8 35 0.00076 27.2 1.9 15 50-64 1-15 (278)
390 PHA02898 virion envelope prote 30.4 68 0.0015 23.9 3.2 28 111-138 35-62 (92)
391 PHA03326 nuclear egress membra 29.6 3.2E+02 0.0069 24.0 7.6 29 120-148 245-273 (275)
392 PF04053 Coatomer_WDAD: Coatom 29.6 92 0.002 28.4 4.6 70 9-89 334-414 (443)
393 PF11817 Foie-gras_1: Foie gra 29.1 1.1E+02 0.0023 25.2 4.5 29 21-60 179-207 (247)
394 PF09016 Pas_Saposin: Pas fact 29.0 65 0.0014 23.1 2.7 26 66-91 5-30 (76)
395 PF10953 DUF2754: Protein of u 28.9 10 0.00022 26.5 -1.3 18 119-136 32-49 (70)
396 KOG3026 Splicing factor SPF30 28.8 1E+02 0.0023 26.7 4.5 45 44-88 5-49 (262)
397 PF09205 DUF1955: Domain of un 28.2 1.7E+02 0.0037 23.8 5.3 34 15-59 115-148 (161)
398 PF02064 MAS20: MAS20 protein 28.1 95 0.0021 23.8 3.8 29 25-64 68-96 (121)
399 PF13830 DUF4192: Domain of un 27.5 1.6E+02 0.0035 25.1 5.5 60 4-74 256-317 (324)
400 PF10255 Paf67: RNA polymerase 27.4 68 0.0015 29.3 3.3 29 19-58 163-191 (404)
401 smart00101 14_3_3 14-3-3 homol 27.1 1.6E+02 0.0034 25.0 5.3 64 2-72 144-218 (244)
402 TIGR01280 xseB exodeoxyribonuc 26.7 1.3E+02 0.0028 20.6 3.9 13 2-14 3-15 (67)
403 PRK14762 membrane protein; Pro 26.6 58 0.0013 19.0 1.8 14 122-135 3-16 (27)
404 COG3914 Spy Predicted O-linked 26.5 1.7E+02 0.0037 28.5 5.8 56 5-65 121-176 (620)
405 PF09125 COX2-transmemb: Cytoc 26.1 79 0.0017 20.0 2.5 9 123-131 14-22 (38)
406 PRK00575 tatA twin arginine tr 26.0 39 0.00084 25.1 1.3 20 121-140 3-22 (92)
407 PHA02537 M terminase endonucle 25.9 55 0.0012 27.7 2.3 19 46-64 193-211 (230)
408 PF08159 NUC153: NUC153 domain 25.4 39 0.00085 20.1 1.0 14 57-70 12-25 (30)
409 PF14316 DUF4381: Domain of un 25.0 68 0.0015 24.4 2.5 17 121-137 19-35 (146)
410 PF05767 Pox_A14: Poxvirus vir 25.0 99 0.0022 23.0 3.2 28 111-138 35-62 (92)
411 PRK00977 exodeoxyribonuclease 24.9 1.4E+02 0.003 21.1 3.9 12 2-13 12-23 (80)
412 COG4976 Predicted methyltransf 24.7 58 0.0013 28.6 2.2 86 2-93 45-134 (287)
413 PF02184 HAT: HAT (Half-A-TPR) 24.6 1.3E+02 0.0029 18.1 3.2 22 46-67 2-23 (32)
414 PF12925 APP_E2: E2 domain of 24.4 1.5E+02 0.0032 24.7 4.5 22 44-65 110-131 (193)
415 PRK08455 fliL flagellar basal 24.4 92 0.002 25.1 3.3 30 111-140 12-44 (182)
416 PF09656 PGPGW: Putative trans 24.3 62 0.0013 21.6 1.9 14 121-134 5-18 (53)
417 PF14555 UBA_4: UBA-like domai 24.3 1.4E+02 0.0031 18.1 3.5 37 3-55 1-37 (43)
418 KOG1915 Cell cycle control pro 24.3 5.8E+02 0.013 24.9 8.8 52 2-64 299-355 (677)
419 PF05053 Menin: Menin; InterP 24.2 3.2E+02 0.007 26.6 7.2 71 4-88 297-379 (618)
420 PF00244 14-3-3: 14-3-3 protei 24.0 1.4E+02 0.003 24.7 4.3 26 2-30 142-172 (236)
421 PRK00191 tatA twin arginine tr 24.0 49 0.0011 24.1 1.5 23 121-143 2-24 (84)
422 PF12968 DUF3856: Domain of Un 23.8 2.6E+02 0.0057 22.3 5.6 44 5-59 81-128 (144)
423 PRK05771 V-type ATP synthase s 23.7 52 0.0011 30.9 2.0 26 110-135 469-494 (646)
424 PHA02680 ORF090 IMV phosphoryl 23.6 86 0.0019 23.3 2.7 24 122-145 16-40 (91)
425 PHA02898 virion envelope prote 23.3 62 0.0013 24.1 1.9 23 122-144 16-39 (92)
426 cd09243 BRO1_Brox_like Protein 23.1 47 0.001 29.5 1.5 40 20-59 109-156 (353)
427 PRK14064 exodeoxyribonuclease 22.5 1.7E+02 0.0036 20.6 3.9 12 2-13 8-19 (75)
428 PF02609 Exonuc_VII_S: Exonucl 22.2 2E+02 0.0042 18.4 3.9 13 2-14 1-13 (53)
429 cd02518 GT2_SpsF SpsF is a gly 22.0 1.3E+02 0.0027 23.8 3.6 37 45-82 193-229 (233)
430 PRK04778 septation ring format 21.8 71 0.0015 29.8 2.4 31 40-78 516-546 (569)
431 PF13556 HTH_30: PucR C-termin 21.5 1.6E+02 0.0034 19.0 3.4 26 6-31 33-58 (59)
432 PLN03184 chloroplast Hsp70; Pr 21.4 2.7E+02 0.0058 26.7 6.2 31 41-72 591-621 (673)
433 COG5091 SGT1 Suppressor of G2 21.4 1.7E+02 0.0038 26.3 4.6 58 3-71 56-121 (368)
434 PF14798 Ca_hom_mod: Calcium h 21.2 67 0.0015 27.4 2.0 16 121-136 179-194 (251)
435 cd00280 TRFH Telomeric Repeat 21.1 1.7E+02 0.0037 24.6 4.2 44 44-88 124-168 (200)
436 cd01324 cbb3_Oxidase_CcoQ Cyto 21.1 1.1E+02 0.0023 19.8 2.5 10 127-136 21-30 (48)
437 PRK14069 exodeoxyribonuclease 20.9 1.7E+02 0.0037 21.7 3.8 12 2-13 10-21 (95)
438 PF03669 UPF0139: Uncharacteri 20.7 81 0.0018 23.4 2.1 21 118-138 49-69 (103)
439 PRK14067 exodeoxyribonuclease 20.7 1.9E+02 0.004 20.6 3.9 12 2-13 9-20 (80)
440 KOG2047 mRNA splicing factor [ 20.6 5.1E+02 0.011 26.0 7.9 16 2-17 566-581 (835)
441 smart00139 MyTH4 Domain in Myo 20.6 4E+02 0.0086 20.4 6.1 48 46-93 18-74 (144)
442 PRK14066 exodeoxyribonuclease 20.5 1.9E+02 0.0042 20.3 3.9 12 2-13 6-17 (75)
443 PF15651 Tox-SGS: Salivary gla 20.5 83 0.0018 23.7 2.1 18 119-136 75-93 (100)
444 COG2707 Predicted membrane pro 20.5 84 0.0018 25.3 2.2 16 122-137 83-99 (151)
445 PF09145 Ubiq-assoc: Ubiquitin 20.4 71 0.0015 21.0 1.5 13 46-58 19-31 (46)
446 KOG2518 5'-3' exonuclease [Rep 20.4 42 0.0009 32.1 0.6 21 43-63 108-128 (556)
447 PF12955 DUF3844: Domain of un 20.2 1.3E+02 0.0028 22.7 3.1 29 111-140 61-90 (103)
448 PRK14983 aldehyde decarbonylas 20.1 5.5E+02 0.012 22.0 7.1 85 3-87 33-153 (231)
449 KOG1915 Cell cycle control pro 20.0 2.4E+02 0.0052 27.4 5.4 49 2-61 453-501 (677)
No 1
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=100.00 E-value=1e-61 Score=391.55 Aligned_cols=137 Identities=79% Similarity=1.206 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchh
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapel 80 (152)
||+|||++|++||.|||++|+|+|||||||+++||++||..+|++.|++|.+||++|+++||+|++||++|+|+.|||||
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~l 129 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPEL 129 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcccccCCCCCCCCCCCCcccccccCCCCchhhhhhHHHHHHHHHHHHHhhh
Q 031849 81 HMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 81 h~e~~~~~~~q~~~~~~~~~~~~~~~~~~~k~k~~sd~~ydv~gw~il~~~iv~w~~~a~ 140 (152)
|+|||||+++||++|+ +++++++.|++||||+|||||||+|||||++|||+||||||
T Consensus 130 h~e~~~~~~~~q~~~~---~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~givawv~~ak 186 (186)
T PF06552_consen 130 HMEIHKQGLGQQAMGG---ASSSSSSAKSSKKKKSSDFKYDVFGWVILAVGIVAWVGMAK 186 (186)
T ss_dssp HHHHHHSSS---------------------------------------------------
T ss_pred HHHHHHHHhhhhhccC---CCCCCCCccccccccccchhhhhcchHHHHHHHHHHHhhcC
Confidence 9999999999998755 45666778999999999999999999999999999999997
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=9.9e-13 Score=113.55 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
|+++||..++.||.|||.+..||-.||.||+.+| +|++|++.|+|||++||+|+.|+..|+.+++..
T Consensus 130 ~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g-----------k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 130 EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG-----------KYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC-----------cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999765 999999999999999999999999999997654
No 3
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=4e-11 Score=78.54 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP 62 (152)
+++|+..|+++|++||++..+|+++|.+|..+| +++++|+.+|++|+++||
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~----------~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG----------KDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT----------THHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----------ccHHHHHHHHHHHHHcCc
Confidence 789999999999999999999999999999753 279999999999999999
No 4
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.19 E-value=5.8e-11 Score=77.34 Aligned_cols=53 Identities=25% Similarity=0.502 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++|+.+|++.++++.||.++..+| ++++|+.+|+++++++|+|+
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCC
Confidence 689999999999999999999999999999764 99999999999999999986
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.07 E-value=6.3e-10 Score=84.34 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++++.++|.+.++|++||.++... +++++|+.+|++|++++|++.
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-----------g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-----------KEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHhcCCCCc
Confidence 56666667777777777667777776666643 366666666666666666663
No 6
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.05 E-value=5.7e-10 Score=72.67 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe 72 (152)
+++|+..|++++..+|++.++++.|+.+|...| ++++|..++++++..+|+|+.|+..+.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999999999999999865 999999999999999999999887764
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.97 E-value=2.1e-09 Score=81.47 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~ 75 (152)
.+++|+..|++|++++|++.+++++||.+|..+| ++++|+.+|++|++++|+|..|...+..+.
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g-----------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG-----------EPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3789999999999999999999999999999764 999999999999999999988887665443
No 8
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.95 E-value=4.3e-09 Score=69.36 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~ 73 (152)
.+++|+..++++|+++|+++.+++.+|.+|... ++|++|+++|+++++++|+++.......+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-----------g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQL-----------GRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-----------ccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 378999999999999999999999999999975 49999999999999999999887776654
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.91 E-value=2.5e-09 Score=100.95 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+.+||.+|++|+++||+..|||+||||+|... ..|++|+.||+||+.+.|+|.
T Consensus 234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-----------~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-----------RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-----------hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccH
Confidence 67899999999999999999999999999753 489999999999999999884
Q ss_pred -----HHHHHHHHHHcCchhhHHHHhhhhcccc
Q 031849 66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQT 93 (152)
Q Consensus 66 -----~Y~ksLe~~~Kapelh~e~~~~~~~q~~ 93 (152)
.|+++|++-..-|+.+-++.+.+-..|.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence 4888888887778888888877765554
No 10
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=6.9e-09 Score=86.69 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH--------------H
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------Y 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~--------------Y 67 (152)
+++|+..|++||+++|+++++|++||.+|...| ++++|+++|++|++++|++.. |
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG-----------NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 578999999999999999999999999998754 999999999999999999863 5
Q ss_pred HHHHHHHHcCchhhH
Q 031849 68 QKSLEVAAKAPELHM 82 (152)
Q Consensus 68 ~ksLe~~~Kapelh~ 82 (152)
..+++.++++.++++
T Consensus 149 ~eA~~~~~~al~~~P 163 (296)
T PRK11189 149 ELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHHHHhCC
Confidence 566666666555543
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.87 E-value=9.8e-09 Score=74.01 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++++.++|++.++++++|.+|... +++++|..+|+++++++|++.
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQML-----------KEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcCCCCh
Confidence 56777777777777777777777777777653 477777777777777777764
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.79 E-value=1.6e-08 Score=95.55 Aligned_cols=80 Identities=26% Similarity=0.255 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+|-||..|++||+++|+..+||.||+||+...| +..+|..||.+||.++|+|.
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 688999999999999999999999999999754 88999999999999999985
Q ss_pred -----HHHHHHHHHHcCchhhHHHHhhhhccc
Q 031849 66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 66 -----~Y~ksLe~~~Kapelh~e~~~~~~~q~ 92 (152)
+|+++|+++..--+-|-+|..-.-.||
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence 477777776666666666655444343
No 13
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=3.8e-08 Score=78.66 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ 68 (152)
.++++..|+++|+.||++.++|+.||.+|... +++++|+.+|++|++++|+|....
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~-----------g~~~~A~~a~~~Al~l~P~~~~~~ 110 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWR-----------NDYDNALLAYRQALQLRGENAELY 110 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 47899999999999999999999999999875 599999999999999999997433
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.77 E-value=3.4e-08 Score=85.28 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++||+++|++..+|+++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCCH
Confidence 556666666666666666666666666666543 56666666666666666553
No 15
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.74 E-value=1.7e-08 Score=58.71 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=30.2
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+++|.+|..+ +++++|++||++||++||+|
T Consensus 1 a~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQL-----------GDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHh-----------CCchHHHHHHHHHHHHCcCC
Confidence 47899999999975 49999999999999999986
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.71 E-value=6.2e-08 Score=87.65 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+++|+..|+++|+++|++.++|+++|.+|... +++++|+.+|++|++++|+|.
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK-----------GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 67888888888888898888999999888864 499999999999999999984
Q ss_pred -----HHHHHHHHHHcCchhhHHHHhhhhccc
Q 031849 66 -----LYQKSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 66 -----~Y~ksLe~~~Kapelh~e~~~~~~~q~ 92 (152)
.|+++++.....++++..+..-+..+|
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 244445555556666666666555444
No 17
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=6.1e-08 Score=69.85 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCch
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kape 79 (152)
+++|+..|+++++++|++.+.++++|.+|... +++++|+.+|+++++++|++..+...+.-+.+.+|
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLAL-----------GEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 56788888888888888888888888888764 37888888888888888888776666655555444
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.71 E-value=6.1e-08 Score=83.72 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
+++|+..|++||+++|+++.+|++||++|..+ ++|++|+.+|++|++++|+|...+..+..+
T Consensus 52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-----------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 52 FTEAVADANKAIELDPSLAKAYLRKGTACMKL-----------EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999975 499999999999999999998777666444
No 19
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.70 E-value=4.2e-08 Score=88.92 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcC
Q 031849 1 MILDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dA---lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Ka 77 (152)
.|++|+..|++||++||++.++ |||||.+|..+| ++++|++||++|+++. |..|. .+..+
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~dEAla~LrrALels--n~~f~----~i~~D 152 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EGKKAADCLRTALRDY--NLKFS----TILND 152 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhc--chhHH----HHHhC
Confidence 4899999999999999999976 999999999865 9999999999999983 55554 34566
Q ss_pred chh
Q 031849 78 PEL 80 (152)
Q Consensus 78 pel 80 (152)
|++
T Consensus 153 pdL 155 (453)
T PLN03098 153 PDL 155 (453)
T ss_pred cch
Confidence 655
No 20
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=9.9e-08 Score=59.49 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++++|++..+++++|.+|... +++++|+++|++++++.|.+.
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKL-----------GKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCcch
Confidence 368999999999999999999999999999863 699999999999999999886
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=1.3e-07 Score=75.23 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|++.|+-+..+||.+++-|++||.++.. +++|++|+++|.+|+.++|+|+
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-----------~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-----------QKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHhcCCCCc
Confidence 37899999999999999999999999999985 4699999999999999999996
No 22
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.64 E-value=8.9e-08 Score=78.20 Aligned_cols=111 Identities=24% Similarity=0.225 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
+|.|...++.+...||.++|++++=|.|+..++-+.+ -.+++..+++|+.=|++||.|||+.-
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~-g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ-GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999988765433 34677899999999999999999872
Q ss_pred ---------HHHHHHHHHHcCchhh----------------HHHHhhhhcccccCCCCCCCCCCCCcccccccCC
Q 031849 66 ---------LYQKSLEVAAKAPELH----------------MEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKS 115 (152)
Q Consensus 66 ---------~Y~ksLe~~~Kapelh----------------~e~~~~~~~q~~~~~~~~~~~~~~~~~~~k~k~~ 115 (152)
.|.++.+.+.||-++. +|||..+..|+.++. +++..+++..+.|..|.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~~q--~~~~~~~~~~~~~~~k~ 158 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLGQQ--AMGGASSSSSSAKSSKK 158 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS----------------------
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhhhh--hccCCCCCCCCcccccc
Confidence 4777776666443332 578888888886433 45555555444443344
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=98.63 E-value=1.5e-07 Score=84.93 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++||++||++.++|++||.+|...| ++++|+.+|++|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G-----------~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAG-----------QLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCh
Confidence 577888888888888888888888888887654 88888888888888888864
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=98.62 E-value=9.6e-08 Score=86.22 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH--------------H
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------Y 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~--------------Y 67 (152)
+++|+..+++||++||++.++|..||.++... +++++|+.+|++|++++|+|.. |
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIH-----------SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 57999999999999999999999999999865 4999999999999999999863 4
Q ss_pred HHHHHHHHcCchhhHH
Q 031849 68 QKSLEVAAKAPELHME 83 (152)
Q Consensus 68 ~ksLe~~~Kapelh~e 83 (152)
.++++.++++.++++.
T Consensus 389 ~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 389 EEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 5556666666555443
No 25
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.62 E-value=7.3e-08 Score=55.29 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=30.3
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|++||.+|... ++|++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQL-----------GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHCcCC
Confidence 47899999999975 49999999999999999987
No 26
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=1.4e-07 Score=75.38 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHH-HhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAH-TSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy-~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++|++++|++.++++++|.++ ...|- ..+++|..+|++|++++|+|.
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~---------~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQ---------HMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHhCCCCh
Confidence 56777777777777777777777777764 33221 124666666666666666663
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=3.8e-08 Score=92.06 Aligned_cols=69 Identities=30% Similarity=0.383 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------H
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------L 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------~ 66 (152)
.+|.|..+|..||.+||.|-.|||-||.+|+++ |.+|.|.-+||||+++||.|. .
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-----------ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-----------EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-----------chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh
Confidence 378999999999999999999999999999985 599999999999999999995 3
Q ss_pred HHHHHHHHHcCchh
Q 031849 67 YQKSLEVAAKAPEL 80 (152)
Q Consensus 67 Y~ksLe~~~Kapel 80 (152)
+.++|+++++|.-|
T Consensus 539 ~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 539 KDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHHHHHHHhc
Confidence 66777777777543
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.58 E-value=1.6e-07 Score=78.56 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++|+++|++..+++++|.+|...| ++++|+++|+++++++|++.
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g-----------~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG-----------RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 4789999999999999999999999999998754 99999999999999999997
No 29
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.54 E-value=5.2e-07 Score=69.24 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC---CCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL---TPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l---~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
+++|+..|++++.++|++..+++++|.+|...|.. ..+.++|...+++|+++|++++.++|+| |..++....-+-
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 88 HDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh--HHHHHHHHHhcC
Confidence 68999999999999999999999999999876632 3456778888999999999999999998 777766554443
No 30
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.8e-07 Score=81.23 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------H
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------L 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------~ 66 (152)
.|++||.+|.+||+++|+++--|.|..-||.++| +|+.|++-.+.||.+||.+. .
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 3899999999999999999999999999999875 99999999999999999885 2
Q ss_pred HHHHHHHHHcCchhh---------HHHHhhhhcccc
Q 031849 67 YQKSLEVAAKAPELH---------MEIHKHGLGQQT 93 (152)
Q Consensus 67 Y~ksLe~~~Kapelh---------~e~~~~~~~q~~ 93 (152)
|.++++-+.|+.||. +++.++-+.|+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 566666777777764 455556565553
No 31
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.52 E-value=8.2e-08 Score=57.68 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHH
Q 031849 8 KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKAT 51 (152)
Q Consensus 8 ~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~ 51 (152)
.|++||++||+++++|++||++|...| ++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhc
Confidence 489999999999999999999999765 777775
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.48 E-value=6.4e-07 Score=81.13 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH--------------H
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------Y 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~--------------Y 67 (152)
+++|+..|+++|+++|+..++|+++|.+|..+ +++++|+.+|++|++++|+|.. |
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLEL-----------GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 68999999999999999999999999999875 4999999999999999999852 5
Q ss_pred HHHHHHHHcCchhhH
Q 031849 68 QKSLEVAAKAPELHM 82 (152)
Q Consensus 68 ~ksLe~~~Kapelh~ 82 (152)
.++++.+.++.++++
T Consensus 416 ~~A~~~~~kal~l~P 430 (615)
T TIGR00990 416 AQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHHHHHHHcCc
Confidence 555666666655443
No 33
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=8.4e-07 Score=70.66 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe 72 (152)
.+++||..|.+|+.++|+++.+++|+|.+|...| +.+.|.++|+.|+..-=+++.|....+
T Consensus 84 ~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG-----------~~~~A~~aF~~Ai~~~~~~~~~~~l~~ 144 (157)
T PRK15363 84 HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD-----------NVCYAIKALKAVVRICGEVSEHQILRQ 144 (157)
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 3789999999999999999999999999999765 999999999999999856655544443
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.42 E-value=1.3e-06 Score=66.51 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhccc---CCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAF---LTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~---l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++|+.++|.+.+++.+||.+|..+|. ...|..+|..++++|+.+|++++..+|++.
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 6899999999999999999999999999984431 234667888899999999999999999764
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.41 E-value=4.3e-07 Score=59.26 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=33.7
Q ss_pred CChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 18 NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 18 ~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++++|+++|+.+... ++|++|+.+|++|+++||+|.
T Consensus 1 e~a~~~~~~g~~~~~~-----------~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQ-----------GDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp TSHHHHHHHHHHHHHT-----------THHHHHHHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCH
Confidence 4688999999999975 599999999999999999995
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.41 E-value=1.6e-06 Score=59.94 Aligned_cols=52 Identities=23% Similarity=0.322 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..|++++..+|++ .++++.+|.++... +++++|+.+|++++..+|++
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-----------GKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHHHHCCCC
Confidence 688999999999999887 68999999999874 48999999999999999986
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.39 E-value=1e-06 Score=85.82 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++|+++|++.+++++||.+|..+| ++++|+.+|++|++++|++.
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG-----------DRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcc
Confidence 3789999999999999999999999999998754 89999999999999999763
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.38 E-value=2.2e-06 Score=63.50 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++++|++..+++.+|.+|... +++++|+++|+++++++|++.
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQL-----------GELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCH
Confidence 368999999999999999999999999999875 499999999999999999885
No 39
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.36 E-value=1.6e-06 Score=66.50 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031849 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~---dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ 68 (152)
.+++|+..|+++++++|+.+ .++++||.+|...| ++++|+.+|++|++++|++....
T Consensus 50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcccHHHH
Confidence 37899999999999988754 68999999999764 99999999999999999986543
No 40
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.34 E-value=2.4e-06 Score=65.06 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~---dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+++|+..|++||.+.|+.. .+|++||.+|...| ++++|+.+|++|+.++|++..
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-----------~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-----------EHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcHH
Confidence 37899999999999988743 58999999999764 999999999999999998864
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.4e-06 Score=81.00 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcC
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Ka 77 (152)
++++||..|++||.+.|++.++|--+|-+|.-+ +++++|+++|.|||.++|+|......|.++-.+
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll-----------gnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLL-----------GNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh-----------cChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 589999999999999999999999999999865 599999999999999999998877777655444
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=5.8e-07 Score=61.47 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~--~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++.+|. +...+++||.+|... ++|++|++++++ ++.+|.|.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-----------~~y~~A~~~~~~-~~~~~~~~ 58 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-----------GKYEEAIELLQK-LKLDPSNP 58 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-----------THHHHHHHHHHC-HTHHHCHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-----------CCHHHHHHHHHH-hCCCCCCH
Confidence 478999999999999995 566788899999975 499999999999 99999884
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.33 E-value=1.3e-06 Score=85.27 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|+++++++|++.+++++||+++...| ++++|+++|++|++++|+|.
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G-----------~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG-----------DIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 567777777777777777777777777777543 77888888888888888775
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=2.2e-06 Score=59.22 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe 72 (152)
.+++|+..|++++..+|++ +++++++|.+|... +++++|+.+|+++++..|++...+.++.
T Consensus 54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL-----------GDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh-----------CChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 0478999999999999886 78999999999864 5999999999999999999998777653
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=1.8e-06 Score=67.90 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~---dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+++|+..|++++.++|++. ++++++|.+|... +++++|+..|+++++.+|+++.
T Consensus 48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-----------GDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHCcCCCc
Confidence 47899999999999999876 7899999999975 4999999999999999998763
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.29 E-value=3e-06 Score=82.78 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++|+..|++||+++|+ .+++++||.++..+| ++++|+.+|++|++++|+|.
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG-----------~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRH-----------NVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 68999999999999997 999999999999865 99999999999999999996
No 47
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.27 E-value=1.1e-06 Score=50.60 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=29.7
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.++|++||.+|..+ +++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~y~~~-----------~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQL-----------GDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHT-----------TSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCC
Confidence 36899999999975 49999999999999999976
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=4.5e-06 Score=51.85 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
+++|+..|++++.++|.+.++++++|.++... +++++|..+|+++++++|+
T Consensus 50 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 50 YEEALEDYEKALELDPDNAKAYYNLGLAYYKL-----------GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-----------HhHHHHHHHHHHHHccCCC
Confidence 68999999999999999999999999999864 5899999999999999984
No 49
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.23 E-value=1.2e-06 Score=58.47 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhc----CCC---ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 1 MILDAISKLEEALMV----SPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 1 mieeAIs~le~AL~i----dP~---~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
.+++|++.|++||++ .++ -..+++|||.+|..+| ++++|+++|++|+++
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-----------DYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Confidence 478999999999965 222 3567999999999764 999999999999876
No 50
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.22 E-value=3.6e-06 Score=52.11 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=36.5
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
+++++.||.+|..+| ++++|+++|+++|+.+|+|...+..|
T Consensus 1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 478999999999865 99999999999999999998877655
No 51
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.21 E-value=2.6e-06 Score=77.42 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=50.9
Q ss_pred hcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHc
Q 031849 14 MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL-----------------YQKSLEVAAK 76 (152)
Q Consensus 14 ~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~-----------------Y~ksLe~~~K 76 (152)
+-+|++.++|+|||++|..+| +|++|+.+|++||+++|++.. +.++++.+.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lG-----------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKG-----------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 368999999999999999754 999999999999999999873 3667788888
Q ss_pred Cchh-hHHH
Q 031849 77 APEL-HMEI 84 (152)
Q Consensus 77 apel-h~e~ 84 (152)
|.++ ++.+
T Consensus 138 ALelsn~~f 146 (453)
T PLN03098 138 ALRDYNLKF 146 (453)
T ss_pred HHHhcchhH
Confidence 8887 4444
No 52
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.19 E-value=3.8e-06 Score=76.79 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ 68 (152)
.+++|+..|++|+++|| +..+|..||.++...| ++++|+++|++|+.++|.++.|-
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G-----------~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG-----------DNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCchHH
Confidence 37899999999999999 5899999999998765 99999999999999999988643
No 53
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.4e-06 Score=73.88 Aligned_cols=57 Identities=28% Similarity=0.340 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQK 69 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~k 69 (152)
+.+||..++++|+++|+|..|+|.-|.||.- .++|+.|...|+||++++|+|-..+.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-----------~~e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLA-----------LGEYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-----------hccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 6789999999999999999999999999985 45999999999999999999964433
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.15 E-value=8.9e-06 Score=75.41 Aligned_cols=33 Identities=24% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g 34 (152)
+++|+..|+++++++|++.+++++||.+|...|
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 455666666666666666666666666665544
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.11 E-value=9.2e-06 Score=76.24 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++++|+..|++++.++|++.+++++||.++...| ++++|+++|++|++++|+|.
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g-----------~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARG-----------WPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCh
Confidence 4689999999999999999999999999998754 89999999999999999984
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=5.3e-06 Score=78.41 Aligned_cols=74 Identities=5% Similarity=0.006 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH--------------H
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------Y 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~--------------Y 67 (152)
+|||...|+.+++++|++..|+.+++.++.++ +++|+|+.+++++++.+|+|.. |
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-----------~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-----------QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence 68999999999999999999999999999874 5999999999999999999953 5
Q ss_pred HHHHHHHHcCchhhHHHHh
Q 031849 68 QKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 68 ~ksLe~~~Kapelh~e~~~ 86 (152)
+++.++++++...|+...+
T Consensus 171 ~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 171 EQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHHHHHHHHHHhcCCCcHH
Confidence 6666666665554444333
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.10 E-value=9.7e-06 Score=79.10 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
+++|+..|+++++++|++..++++||.+|... +++++|+++|++|++++|+|...
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~-----------g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMAR-----------KDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHHH
Confidence 68999999999999999999999999999875 49999999999999999999753
No 58
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.08 E-value=2.1e-05 Score=69.22 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|+++++++|++.++++.||.+|...| +|++|+.+|+++++..|++.
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~ 90 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALG-----------DYAAAEKELRKALSLGYPKN 90 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCChh
Confidence 3789999999999999999999999999999754 99999999999999999875
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=8.3e-06 Score=76.67 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+|.|.-.|++|++|||.+...+.++|..|..+ ++.|+|+..|++|+.+||.|++
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-----------k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-----------KRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-----------hhhhHHHHHHHHHHhcCCCCch
Confidence 68999999999999999999999999999875 5999999999999999999974
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.07 E-value=2.5e-05 Score=57.80 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcC--CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVS--PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~id--P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..|++++... |....+++++|.+|...| ++++|..+|+++++.+|++
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG-----------DFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCC
Confidence 455555566655432 344455555555555432 5555555555555555554
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.07 E-value=1.8e-05 Score=62.25 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~d---AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe 72 (152)
.+++|+..|+++++++|++.. ++|.+|.++.... .+.....+++++|++.|+++++.+|++..+.+++.
T Consensus 85 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 85 DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 378999999999999998887 7999999997531 11122236899999999999999999987766653
No 62
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.05 E-value=1.5e-05 Score=74.00 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+++|+..|+++++++|++.+++..||++|...| ++++|+++|++|++++|++..
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g-----------~~~~Ai~~l~~Al~l~P~~~~ 145 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK-----------QYATVADLAEQAWLAFSGNSQ 145 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHH
Confidence 3688999999999999999999999999988754 899999999999999998853
No 63
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=1.5e-05 Score=67.12 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ks 70 (152)
+++|+..|++.|+..|++ ++|+|-||.+|... +++++|+.+|+++++..|+++..-.+
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~-----------g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK-----------GKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 789999999999999998 58999999999975 49999999999999999998643333
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=74.71 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------H
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------L 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------~ 66 (152)
.|+.||.+|+.||..+|++.-.|..||-+++.- .+.++|+..|+|||+|.|..- .
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-----------~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANG-----------NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC-----------cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 378999999999999999999999999998752 589999999999999999875 3
Q ss_pred HHHHHHHHHcCchhh
Q 031849 67 YQKSLEVAAKAPELH 81 (152)
Q Consensus 67 Y~ksLe~~~Kapelh 81 (152)
|+++++.+-.|..+|
T Consensus 514 ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555555555554443
No 65
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.9e-05 Score=73.10 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------HH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------LY 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------~Y 67 (152)
|.+||..|.+||+.||+++.+|.|.+.+|+++| +|..|+.+-++++++||++. .|
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~-----------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG-----------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999875 67777777777777777663 35
Q ss_pred HHHHHHHHcCchhhHHH
Q 031849 68 QKSLEVAAKAPELHMEI 84 (152)
Q Consensus 68 ~ksLe~~~Kapelh~e~ 84 (152)
-++++.+.++.|+.+.-
T Consensus 443 dkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHhcCchh
Confidence 55555555555555443
No 66
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.97 E-value=3.3e-05 Score=62.89 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHH---------------------------HhHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAK---------------------------EYFNKATLYF 54 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~---------------------------~~~ekA~~~F 54 (152)
.++|+..|++||+++|++.+++..|+.++...| +.++++ +++++|+.+|
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~----~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMG----DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 579999999999999999999999999987654 222211 2666666666
Q ss_pred HHHHHcCCCcHH
Q 031849 55 QQAVDEEPSNEL 66 (152)
Q Consensus 55 qkAleldP~Ne~ 66 (152)
++++..+|+|+.
T Consensus 238 ~~~~~~~p~d~~ 249 (280)
T PF13429_consen 238 EKALKLNPDDPL 249 (280)
T ss_dssp HHHHHHSTT-HH
T ss_pred cccccccccccc
Confidence 666666666654
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.5e-05 Score=72.02 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
..||+.|.+|++|||.+..|||-||.+|..+ ....=|+-|||||+++-|+++
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-----------~Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIM-----------KMHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-----------cchHHHHHHHHHHHhcCCCch
Confidence 4689999999999999999999999999764 377778888888888888885
No 68
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.94 E-value=5.5e-05 Score=66.64 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|+..|+++++.+|++.++++++|.+|... +++++|+.+|+++++.+|++..
T Consensus 752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-----------KDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------cCHHHHHHHHHHHHHhCCCCHH
Confidence 56788888888888888888888888888765 4888899999999999998753
No 69
>PLN02789 farnesyltranstransferase
Probab=97.94 E-value=2.5e-05 Score=67.35 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..++++++.||++..+|++.|.++..+|. ...+++++++++||++||+|
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~---------~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP---------DAANKELEFTRKILSLDAKN 141 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc---------hhhHHHHHHHHHHHHhCccc
Confidence 3455555555555566655555555555544331 11244555555555555555
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.91 E-value=1.7e-05 Score=75.95 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
++.+.+..||++||.+|+|||+||.++.++| +++.|.+||+-|+++++.++.
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G-----------d~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLG-----------DSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHhhccCCCc
Confidence 4456899999999999999999999999865 999999999999999999874
No 71
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.90 E-value=3.6e-05 Score=64.11 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..|+++++++|+..++++.||.+|...| ++++|+++|+++++++|++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhh
Confidence 678999999999999999999999999998754 8889999999999888876
No 72
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.87 E-value=5.1e-05 Score=50.33 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=38.5
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHc
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 76 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~K 76 (152)
|.+|.|+.+++++| +|++|..|.+++|+++|+|..++...++.++
T Consensus 2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 67899999999865 9999999999999999999999888877654
No 73
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.87 E-value=5.3e-05 Score=68.38 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 76 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~K 76 (152)
+-|||..+.++|.++|++.++|.....||.- .++|+.|+.-||+|+++||+|...|..++-+.+
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~-----------dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG-----------DEMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 5689999999999999999999999999973 689999999999999999999877777665543
No 74
>PLN02789 farnesyltranstransferase
Probab=97.86 E-value=3.6e-05 Score=66.40 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++++++.++++|++||++..||++.|.++..+ +++++|+++|+++|++||.|.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-----------~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-----------GGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHCCCch
Confidence 36789999999999999999999999999875 479999999999999999885
No 75
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.86 E-value=2e-05 Score=47.22 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 22 TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 22 AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
||.+||++|..+| +|++|++||++||.+
T Consensus 1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHh
Confidence 6899999999865 999999999995544
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=4.1e-05 Score=71.04 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++-...|++|..+||++++.||+.|..+.- .++|++|+.-||||+.++|+|-
T Consensus 377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-----------L~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFL-----------LQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHHHHhcCCCCCchhHhHHHHHHH-----------HHHHHHHHHHHHHHhhcChhhh
Confidence 456788999999999999999999999874 4799999999999999999993
No 77
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.85 E-value=3.2e-05 Score=40.39 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
++++++|.+|... +++++|..+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKL-----------GDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHH-----------hhHHHHHHHHHHHHccCCCC
Confidence 6799999999864 59999999999999999974
No 78
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.85 E-value=6e-05 Score=62.35 Aligned_cols=60 Identities=20% Similarity=0.106 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHH---HHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTL---WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSL 71 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAl---ynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne-----~Y~ksL 71 (152)
.+++|+..|++++...|....+. +.||.+|... +++++|+.+|++.+++.|+|+ .|+.++
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-----------~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-----------ADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 37899999999999999987775 9999999975 499999999999999999996 466654
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.84 E-value=6.3e-05 Score=71.26 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+|||...++++|..+|++.++++.+|.++..+| ++++|+++|++++..+|+++
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g-----------~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG-----------QSEQADACFERLSRQHPEFE 188 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcCCCcH
Confidence 3799999999999999999999999999999764 99999999999999999976
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.84 E-value=5.7e-05 Score=64.52 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~ 73 (152)
+.+|++.|.+|.+++|++.++|.-||.+|...| ++++|-.-|.||+++.|+++.+..+|-|
T Consensus 116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G-----------r~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG-----------RFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred hHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-----------ChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 789999999999999999999999999999865 9999999999999999999877766644
No 81
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.83 E-value=9.4e-05 Score=69.54 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|+..|+++++.+|++.+ ++.||.+|... +++++|+.+|++|++++|+|+.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~-----------g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRA-----------GRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCCHH
Confidence 45555555555555555555 55555555543 3677777777777777777753
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.79 E-value=7.4e-05 Score=63.54 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+..|..-||+||++||++.++|--+..+|.++| +.+.|-+.|++|+.++|+|-
T Consensus 51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcCCCcc
Confidence 456888899999999999999999999998765 88999999999999999884
No 83
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00016 Score=60.93 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 1 mieeAIs~le~AL~idP~---~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
.+++|+..|+++++..|+ .++|++.||++|..+ +++++|+..|++.++..|+++..+++.+-.
T Consensus 195 ~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~-----------g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 195 KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK-----------GDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 478999999999977666 699999999999865 499999999999999999999888887654
No 84
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.74 E-value=0.00014 Score=59.14 Aligned_cols=71 Identities=15% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcC--CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCch
Q 031849 2 ILDAISKLEEALMVS--PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 2 ieeAIs~le~AL~id--P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kape 79 (152)
+++++..++++.... |.+...|+.+|.++...| ++++|+.+|++||+++|+|+..+..+=..--.-+
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-----------~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-----------DPDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 567888888877655 677788889999999865 9999999999999999999987777644433333
Q ss_pred hhHH
Q 031849 80 LHME 83 (152)
Q Consensus 80 lh~e 83 (152)
-..+
T Consensus 195 ~~~~ 198 (280)
T PF13429_consen 195 DYDE 198 (280)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 3333
No 85
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.74 E-value=6.7e-05 Score=42.33 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.2
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+|+|++|.+|... +++++|++.|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~-----------g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKL-----------GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHH-----------CHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHHCcCC
Confidence 6899999999975 49999999999999999975
No 86
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.73 E-value=0.00015 Score=63.08 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
.++|+..+++.++.+|++++.+.++|.++... ++|++|.++|+++++++|+++.|...-.+.++.-
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-----------~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-----------GEWQEASLAFRAALKQRPDAYDYAWLADALDRLH 375 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999975 4999999999999999999988766655555443
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0001 Score=62.72 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHH---------------------------HhHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAK---------------------------EYFNKATLYF 54 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~---------------------------~~~ekA~~~F 54 (152)
.+-|-+.|++||.++|++.|++.|-|--++.+| .||...+. ++++.|.++|
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg--~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLCAQG--RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC--ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 467889999999999999999999999999987 34443322 2677788888
Q ss_pred HHHHHcCCCcHHHHH
Q 031849 55 QQAVDEEPSNELYQK 69 (152)
Q Consensus 55 qkAleldP~Ne~Y~k 69 (152)
+|||++||+++.-..
T Consensus 163 ~raL~~dp~~~~~~l 177 (250)
T COG3063 163 KRALELDPQFPPALL 177 (250)
T ss_pred HHHHHhCcCCChHHH
Confidence 888888888765443
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.70 E-value=0.00014 Score=70.65 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHH---------------------------HHhHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEA---------------------------KEYFNKATLYF 54 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A---------------------------~~~~ekA~~~F 54 (152)
+++|+..|.++|++||.+..||+-||.+|..+| |...+ .+++++|.-||
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG----d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG----DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc----cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 789999999999999999999999999999886 33333 35899999999
Q ss_pred HHHHHcCCCc
Q 031849 55 QQAVDEEPSN 64 (152)
Q Consensus 55 qkAleldP~N 64 (152)
-|||..+|.|
T Consensus 231 ~rAI~~~p~n 240 (895)
T KOG2076|consen 231 SRAIQANPSN 240 (895)
T ss_pred HHHHhcCCcc
Confidence 9999999999
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.00012 Score=66.95 Aligned_cols=64 Identities=22% Similarity=0.074 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHH---------------------------------HHHhHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDE---------------------------------AKEYFN 48 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~---------------------------------A~~~~e 48 (152)
++.|++.|++|+++||+++.||--|+.+|.....+.++.+. ..++++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 46899999999999999999999999988554344442111 013889
Q ss_pred HHHHHHHHHHHcCCCcH
Q 031849 49 KATLYFQQAVDEEPSNE 65 (152)
Q Consensus 49 kA~~~FqkAleldP~Ne 65 (152)
+|..+|+||++++|+..
T Consensus 438 ~A~~~l~rAl~L~ps~~ 454 (517)
T PRK10153 438 EAYQAINKAIDLEMSWL 454 (517)
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 99999999999998654
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.69 E-value=8.6e-05 Score=73.25 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.||+||+..+++|+.||+|-.|+.-||.|+.+++ ++.|+|.++|..|.+++|+|-
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~----------q~le~A~ehYv~AaKldpdnl 71 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG----------QDLEKAAEHYVLAAKLDPDNL 71 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc----------CCHHHHHHHHHHHHhcChhhh
Confidence 4899999999999999999999999999999875 459999999999999999995
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.67 E-value=0.00019 Score=62.43 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCCh--HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHH--HHHHcCCCcHHHHHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRH--DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--QAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~--dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fq--kAleldP~Ne~Y~ksLe~~~Ka 77 (152)
.+.++..++++++.+|+++ ..+.+||.++... ++|++|.++|+ ++++++|+++.|...-++..+.
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-----------~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-----------GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-----------ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 3578899999999999999 8888999999875 59999999999 6999999999888766666543
No 92
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00012 Score=67.51 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
.|.||..|++||++||+...||-.+|--|..+ .+...|+++|.+||++||.+-
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm-----------KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM-----------KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh-----------cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence 48899999999999999999999999999864 489999999999999999873
Q ss_pred -----HHHHHHHHHHcCchhhHHHHh
Q 031849 66 -----LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 -----~Y~ksLe~~~Kapelh~e~~~ 86 (152)
-||+++++-.-++-+-.-+++
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 156666666555555444443
No 93
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00013 Score=67.75 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------H
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------L 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------~ 66 (152)
.|++|+..|++++.|||++.-+|..|+.+.++++ .++++...|+.|.+--|+-+ .
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~-----------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQH-----------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 3799999999999999999999999999999864 78888888888888888653 3
Q ss_pred HHHHHHHHHcCchhhHHHHhhhh
Q 031849 67 YQKSLEVAAKAPELHMEIHKHGL 89 (152)
Q Consensus 67 Y~ksLe~~~Kapelh~e~~~~~~ 89 (152)
+-++++++++|.||.+..|.-.+
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred HHHHHHHHHHHHhhccccccccc
Confidence 66777888888888777555443
No 94
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00022 Score=65.47 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=31.8
Q ss_pred HHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcC
Q 031849 43 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 43 A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Ka 77 (152)
|.+.+.+|+++|++||.+||+|+...+.|...+|.
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 56799999999999999999999999999888765
No 95
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00025 Score=61.43 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
.++-+..++.-|..||++.+-|+-||-+|..+ ++++.|...|.+|+++.|+|..+.-++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-----------~~~~~A~~AY~~A~rL~g~n~~~~~g~ 196 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-----------GRASDALLAYRNALRLAGDNPEILLGL 196 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----------cchhHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46789999999999999999999999999975 599999999999999999998654443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.57 E-value=0.00021 Score=58.99 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+++|+..|+++++++|++..++..||.+|...| ++++|+.+|+++++..|.+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCCC
Confidence 789999999999999999999999999999754 9999999999999998854
No 97
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.55 E-value=0.00055 Score=57.01 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031849 46 YFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~Y~ksLe 72 (152)
++++|+..|+++++.+|++..+...+.
T Consensus 297 ~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 297 GPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 566666666666666666655554443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00019 Score=67.02 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
+-+|+-.||.|++.||+|.+||--||.+++. +++=-.|+..++|||++||+|-....+|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaE-----------NE~E~~ai~AL~rcl~LdP~NleaLmaL 359 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAE-----------NENEQNAISALRRCLELDPTNLEALMAL 359 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhh-----------ccchHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4589999999999999999999999999996 3566789999999999999997554444
No 99
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.50 E-value=0.001 Score=52.91 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHh-cCCC-ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 2 ILDAISKLEEALM-VSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 2 ieeAIs~le~AL~-idP~-~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
+++-|..|+..++ -.|+ .-+.+|.|...++++ .+|++|+.|....|+.+|+|...+..-++.+++.
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRl-----------keY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~i 118 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRL-----------KEYSKSLRYVDALLETEPNNRQALELKETIEDKI 118 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHH-----------hhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 5678999999996 4444 557899999999975 4999999999999999999999998888877653
No 100
>PRK11906 transcriptional regulator; Provisional
Probab=97.45 E-value=0.00045 Score=63.15 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
..+|...-++|+++||.++.|++.+|.++... ++++.|...|+||+.++|+...
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~-----------~~~~~a~~~f~rA~~L~Pn~A~ 373 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLS-----------GQAKVSHILFEQAKIHSTDIAS 373 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-----------cchhhHHHHHHHHhhcCCccHH
Confidence 35788889999999999999999999988754 3799999999999999998863
No 101
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.001 Score=53.61 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------- 65 (152)
++||...|+-...+||.+++-+..||-++.. +++|++|+++|-.|..++++|+
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-----------~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-----------KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 7899999999999999999988778877764 5799999999999999999885
Q ss_pred -HHHHHHHHHHcCchhhHHHHh
Q 031849 66 -LYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 66 -~Y~ksLe~~~Kapelh~e~~~ 86 (152)
..++.++++..-|+ |.+|.+
T Consensus 122 ~~A~~~f~~a~~~~~-~~~l~~ 142 (165)
T PRK15331 122 AKARQCFELVNERTE-DESLRA 142 (165)
T ss_pred HHHHHHHHHHHhCcc-hHHHHH
Confidence 46677777766666 555544
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.44 E-value=0.00013 Score=49.71 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkA 57 (152)
+++|+..|++ ++++|.+.+.+|-+|.++..+| ++++|+++|++|
T Consensus 41 y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~-----------~y~eAi~~l~~~ 84 (84)
T PF12895_consen 41 YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG-----------KYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHhcC
Confidence 6899999999 9999999999999999999865 999999999986
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00052 Score=59.39 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHH--------------
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQK-------------- 69 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~k-------------- 69 (152)
+||..+.+-|++=+++++||+.|...|.+ .++|++|.-||++.|-++|-|++|-.
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-----------~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLS-----------EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----------HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 68888888888889999999999999987 46999999999999999999986433
Q ss_pred ---HHHHHHcCchhhH
Q 031849 70 ---SLEVAAKAPELHM 82 (152)
Q Consensus 70 ---sLe~~~Kapelh~ 82 (152)
+.+.+++|.++.+
T Consensus 207 ~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 207 LELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHhCh
Confidence 3355666666666
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00052 Score=63.72 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHH-----------------------HHhHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEA-----------------------KEYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A-----------------------~~~~ekA~~~FqkAl 58 (152)
|++||..|-+||.|+|.+|--|-|-.++|+++|.++-+..+| +++|++|+..|.+.|
T Consensus 18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 556666666666666666666666666666655432222221 249999999999999
Q ss_pred HcCCCcHHHHHHHHH
Q 031849 59 DEEPSNELYQKSLEV 73 (152)
Q Consensus 59 eldP~Ne~Y~ksLe~ 73 (152)
+.||+|..-...|.-
T Consensus 98 ~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 98 EKDPSNKQLKTGLAQ 112 (539)
T ss_pred hcCCchHHHHHhHHH
Confidence 999999876665533
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.00026 Score=47.15 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.0
Q ss_pred ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
-..+|++||.+|..+| +|++|+++|++|+++
T Consensus 4 ~a~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 4 TANAYNNLARVYRELG-----------RYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 3578999999999764 999999999999966
No 106
>PRK11906 transcriptional regulator; Provisional
Probab=97.27 E-value=0.00059 Score=62.43 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++.|+..|++|+.+||+.+++||.+|.++... ++.++|.+++++|++++|--.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-----------G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHN-----------EKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCchhh
Confidence 57899999999999999999999999998864 599999999999999999763
No 107
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00029 Score=64.33 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH---------------
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL--------------- 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~--------------- 66 (152)
+++|++.=-..|++|+++.+|++--|.+++.. .+.++|+..|++||.++|+|..
T Consensus 185 ~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~-----------~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDATNAEALYVRGLCLYYN-----------DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred chhHHHHHHHHHhcccchhHHHHhcccccccc-----------cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 56788888889999999999999999999864 5999999999999999999962
Q ss_pred -----------HHHHHHHHHcCchhhHH
Q 031849 67 -----------YQKSLEVAAKAPELHME 83 (152)
Q Consensus 67 -----------Y~ksLe~~~Kapelh~e 83 (152)
||++.|++..|..+.++
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 77777777776665544
No 108
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.22 E-value=0.0034 Score=45.13 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc--HHHHHHH-HHHHc
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQKSL-EVAAK 76 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N--e~Y~ksL-e~~~K 76 (152)
.++.++++++.||++.++.|.|+.++... +++++|++-+-..|..+|+. +..|+.+ ++++-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~-----------g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAA-----------GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 47889999999999999999999999864 59999999999999999976 5565543 44443
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.21 E-value=0.0014 Score=63.45 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
.+++|++.|+++|+++|++.+++..|..+|... +++++|++.+++++.++|++..|
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-----------~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADA-----------GRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-----------CCHHHHHHHHHHhcccCcchHHH
Confidence 368999999999999999999999887777754 48889999999999999988654
No 110
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.0026 Score=47.05 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKS 70 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---~Y~ks 70 (152)
+++|+..+++++.+||-+..+|..|-.+|...| +..+|...|++....|.+-+.+.|+.+ +|++.
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g----~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQG----RRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc----CHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 689999999999999999999999999999876 678888888888888888899999875 45543
No 111
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.0016 Score=55.39 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
.+.||..+-+||+|+|.+-.|+-...-+|.+ .+.|++|++-|++.++++|.+...|+++
T Consensus 150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek-----------~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYEKALERRAEAYEK-----------MEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4678999999999999999999988888875 4799999999999999999988888776
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0013 Score=42.30 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=30.6
Q ss_pred HHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 24 WCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 24 ynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
|.+|.++...| +|++|+.+|+++++.+|+|..+...+
T Consensus 1 ~~~a~~~~~~g-----------~~~~A~~~~~~~l~~~P~~~~a~~~l 37 (65)
T PF13432_consen 1 YALARALYQQG-----------DYDEAIAAFEQALKQDPDNPEAWYLL 37 (65)
T ss_dssp HHHHHHHHHCT-----------HHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred ChHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 56889998754 99999999999999999997544443
No 113
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.08 E-value=0.00067 Score=41.80 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGN 28 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGn 28 (152)
.+++|+..|+++|+.+|++.+++..||.
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4789999999999999999999999985
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.06 E-value=0.0012 Score=64.76 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHc
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 76 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~K 76 (152)
+.++|+..|+++|++||+++.++.|+|-.|.. .++++|.+++.|||...=++..|...+++-+|
T Consensus 131 ~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae------------~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 131 ENKKLKGVWERLVKADRDNPEIVKKLATSYEE------------EDKEKAITYLKKAIYRFIKKKQYVGIEEIWSK 194 (906)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 35789999999999999999999999988873 28999999999999998888888888764444
No 115
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.0051 Score=46.50 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.++||..|++||...... .+++..||.+|..+| ++++|+..|++++...|+.+
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALALLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCcc
Confidence 479999999999875444 679999999999876 99999999999999999843
No 116
>PRK15331 chaperone protein SicA; Provisional
Probab=97.03 E-value=0.0019 Score=51.98 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH-HHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-LYQKSL 71 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne-~Y~ksL 71 (152)
.|++|+..|-.|..++++++..+|..|..|..+ ++.++|..||+-|++ +|++. +-+++.
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-----------~~~~~A~~~f~~a~~-~~~~~~l~~~A~ 145 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-----------RKAAKARQCFELVNE-RTEDESLRAKAL 145 (165)
T ss_pred HHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-----------CCHHHHHHHHHHHHh-CcchHHHHHHHH
Confidence 378999999999999999999999999999975 499999999999999 67664 334343
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0033 Score=54.53 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
||+.|+=+||+.|-++|-++--+-.|+.+++-+|- .++.+-|.+||.+||+++|.|.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg--------~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG--------AENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHhChHhH
Confidence 58899999999999999999999999999876663 4799999999999999999774
No 118
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.92 E-value=0.0018 Score=37.80 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=23.4
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
..++.|||++|..+| ++++|..+|++|+++
T Consensus 2 a~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQG-----------RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence 367999999999765 888888888887764
No 119
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.91 E-value=0.0053 Score=50.62 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC-----------------CchH----------HHHHhHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT-----------------PDQD----------EAKEYFNKATLYF 54 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~-----------------~d~~----------~A~~~~ekA~~~F 54 (152)
+++|+..++++|+.+|++..++.. +.++...|... |+.. ...+++++|...|
T Consensus 59 ~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 137 (355)
T cd05804 59 LPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAA 137 (355)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678999999999999999887664 43333322111 1111 1234799999999
Q ss_pred HHHHHcCCCcH
Q 031849 55 QQAVDEEPSNE 65 (152)
Q Consensus 55 qkAleldP~Ne 65 (152)
+++++++|++.
T Consensus 138 ~~al~~~p~~~ 148 (355)
T cd05804 138 RRALELNPDDA 148 (355)
T ss_pred HHHHhhCCCCc
Confidence 99999999985
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.87 E-value=0.0036 Score=60.22 Aligned_cols=76 Identities=24% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL----EVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL----e~~~Ka 77 (152)
|+++..+|+..|++||-..+.||++|-+...+ ++++.|.+||.+++.++|+|-..=.++ =...|-
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-----------ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQL-----------EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHH-----------hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 78999999999999999999999999999864 699999999999999999996422222 223444
Q ss_pred chhhHHHHhhh
Q 031849 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pelh~e~~~~~ 88 (152)
++-|--++.++
T Consensus 570 ~ra~~~l~EAl 580 (777)
T KOG1128|consen 570 KRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.0035 Score=49.86 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031849 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE 72 (152)
Q Consensus 1 mieeAIs~le~AL~idP~---~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne-----~Y~ksLe 72 (152)
.+++||..|++++...|. -.+|.+.||.+|... ++|++|+..|++-++..|+|+ .|..++.
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-----------~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-----------GDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 378999999999998776 467899999999975 599999999999999999986 4666665
Q ss_pred HHHcCch
Q 031849 73 VAAKAPE 79 (152)
Q Consensus 73 ~~~Kape 79 (152)
.+...++
T Consensus 89 ~~~~~~~ 95 (203)
T PF13525_consen 89 YYKQIPG 95 (203)
T ss_dssp HHHHHHH
T ss_pred HHHhCcc
Confidence 4444433
No 122
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0035 Score=58.96 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHH----hcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031849 2 ILDAISKLEEAL----MVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~le~AL----~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ 68 (152)
+.+|+..|+.+| .+++++ +-.+.|||-+|+++ +.|++|+.|||+||.+.|.|..+.
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl-----------~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL-----------NKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH-----------hhHHHHHHHHHHHHHcCCCchhHH
Confidence 679999999999 344443 45588999999986 499999999999999999997543
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0038 Score=54.15 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+.+|...|.+|++|.|++++.+--+|.+++..+= ...-.+|.+.|++||.+||.|-
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~--------~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQAG--------QQMTAKARALLRQALALDPANI 227 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--------CcccHHHHHHHHHHHhcCCccH
Confidence 4566667777777777777777777766654320 2245566666666666666663
No 124
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.83 E-value=0.0075 Score=47.44 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031849 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE 72 (152)
Q Consensus 1 mieeAIs~le~AL~idP~---~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne-----~Y~ksLe 72 (152)
.|++|+..|++...--|- ...|...||-+|... +++++|+..|++=++++|.|+ .|+++|-
T Consensus 25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-----------~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-----------GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 378999999999975554 678899999999975 599999999999999999997 6999987
Q ss_pred HHHcCc
Q 031849 73 VAAKAP 78 (152)
Q Consensus 73 ~~~Kap 78 (152)
-+....
T Consensus 94 ~~~~~~ 99 (142)
T PF13512_consen 94 YYEQDE 99 (142)
T ss_pred HHHHhh
Confidence 665543
No 125
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.73 E-value=0.0041 Score=59.46 Aligned_cols=64 Identities=27% Similarity=0.257 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~ 75 (152)
|..+|-..|.++|.|+-..+-.+|-+||+|.- ..+.++|++.|++|++++|+|...+++|....
T Consensus 657 ~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-----------l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 657 LHLDATKLLLQALAINSSEPLTFLSLGNAYLA-----------LKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred hhccHHHHHHHHHhhcccCchHHHhcchhHHH-----------HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 45688889999999998888889999999984 45999999999999999999999888886554
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.72 E-value=0.0035 Score=53.36 Aligned_cols=56 Identities=30% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
++||.+.+++||..||++++++.||..+...+| ..-+.+.+++++....+|+|+.-
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g----------k~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLG----------KPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC----------CChhHHHHHHHHHHHhCCCChHH
Confidence 566666666666666666666666666665544 12244555666666666666543
No 127
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0032 Score=57.72 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~d----AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+.+|-++|.+||.|||++-+ .|+|++.++.++| +.++|+.-.+.|+.|||..
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg-----------rl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG-----------RLREAISDCNEALKIDSSY 320 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC-----------CchhhhhhhhhhhhcCHHH
Confidence 56788899999999998544 4888888888875 6778888888888887764
No 128
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.69 E-value=0.0028 Score=54.51 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
-|.-.|.++|.|+|+-++++..||.-++. .++|+-|.+.|.-.+++||.++
T Consensus 83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~-----------a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 83 LARNDFSQALAIRPDMPEVFNYLGIYLTQ-----------AGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHh-----------cccchHHHHHhhhHhccCCcch
Confidence 46678999999999999999999999885 3699999999999999999986
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.58 E-value=0.0078 Score=57.40 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
-+||-+....+|..|+..+-.|--||..+.+ ..+|++|+.||+.|+.++|+|..
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-----------dK~Y~eaiKcy~nAl~~~~dN~q 110 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-----------DKKYDEAIKCYRNALKIEKDNLQ 110 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhh-----------hhhHHHHHHHHHHHHhcCCCcHH
Confidence 3688889999999999999999999999875 35999999999999999999964
No 130
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.0032 Score=59.03 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHH--HHcCCCcHHHHH-----HHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA--VDEEPSNELYQK-----SLEVA 74 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkA--leldP~Ne~Y~k-----sLe~~ 74 (152)
++.|.+.|.+||.-|..-.+|+||+|..+-.+ ++.++|++||-|- +-+|--.-+|+. +||-.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~-----------~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEAL-----------GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHh-----------cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 68999999999999999999999999998754 5999999999875 444444445654 35666
Q ss_pred HcCchhhHHHHh
Q 031849 75 AKAPELHMEIHK 86 (152)
Q Consensus 75 ~Kapelh~e~~~ 86 (152)
.+|+||.++...
T Consensus 575 aqaie~~~q~~s 586 (840)
T KOG2003|consen 575 AQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHhcc
Confidence 788888876544
No 131
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.55 E-value=0.0052 Score=55.89 Aligned_cols=71 Identities=21% Similarity=0.092 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC---CchH--------------------HHHHhHHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT---PDQD--------------------EAKEYFNKATLYFQQA 57 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~---~d~~--------------------~A~~~~ekA~~~FqkA 57 (152)
.|+|||.+|-+++.++|.++-.+-|...||.++..+- .|-. +++++.++|.+-++++
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~v 191 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETV 191 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 3899999999999999999999999999997652210 1111 1345889999999999
Q ss_pred HHcCCCcHHHHHHH
Q 031849 58 VDEEPSNELYQKSL 71 (152)
Q Consensus 58 leldP~Ne~Y~ksL 71 (152)
|+++|++-..+|.+
T Consensus 192 L~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 192 LALEPKNIELKKSL 205 (536)
T ss_pred HhhCcccHHHHHHH
Confidence 99999987777665
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.47 E-value=0.0081 Score=59.03 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH-------------HHHH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL-------------YQKS 70 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~-------------Y~ks 70 (152)
.+++.|-..|..-+++-.||+.||.+|.++| ++++|...|+++|++||+|.. -.+|
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA 168 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKA 168 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHH
Confidence 3566666666667777799999999999865 999999999999999999974 2455
Q ss_pred HHHHHcCchhhHH
Q 031849 71 LEVAAKAPELHME 83 (152)
Q Consensus 71 Le~~~Kapelh~e 83 (152)
++|+.||-+.+..
T Consensus 169 ~~m~~KAV~~~i~ 181 (906)
T PRK14720 169 ITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665543
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.46 E-value=0.015 Score=53.00 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-------------CCchHHHH----------HhHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-------------TPDQDEAK----------EYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l-------------~~d~~~A~----------~~~ekA~~~FqkAl 58 (152)
+-+|.+.|..|++.||++-.|+|..+-+|..+|.. .||-..|. +.+|+|..-|.+.|
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 57899999999999999999999999999877643 34444443 48999999999999
Q ss_pred HcCCCcHHHHHHHHHHHcCch
Q 031849 59 DEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 59 eldP~Ne~Y~ksLe~~~Kape 79 (152)
+.+|+|.+-..+.+-....-|
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQE 154 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHH
Confidence 999999887777766655544
No 134
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.0065 Score=48.90 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
+++|++.|.++|.+-|+.+.||.|...+|.-+| +.++|++-.++||++--+
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKALELAGD 109 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHHHHhcCc
Confidence 689999999999999999999999999998543 677777777777777544
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.40 E-value=0.0061 Score=39.17 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHHcCchhhH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNEL--------------YQKSLEVAAKAPELHM 82 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~--------------Y~ksLe~~~Kapelh~ 82 (152)
.++|++|+++|+++++.+|+|.. |.++.++..+.++.++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46999999999999999999964 5555666666555544
No 136
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.31 E-value=0.0045 Score=40.36 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne 65 (152)
.++|++|++++++++.++|++.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccc
Confidence 3699999999999999999985
No 137
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.18 E-value=0.0081 Score=54.06 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.|.|...|+.||.++|.+++++...|...-. ..+.-+|-.||-|||.++|.|+.
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-----------~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREM-----------HNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-----------hhhhHhhhhhhheeeeeCCCchH
Confidence 5789999999999999999999999998764 35888999999999999999973
No 138
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.15 E-value=0.021 Score=55.45 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHcCCCcHH
Q 031849 45 EYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~ 66 (152)
++|++|++.|+++++++|+|+.
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHH
Confidence 4788888888888888888863
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.11 E-value=0.03 Score=46.37 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcc------cCCCchHH-HHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHA------FLTPDQDE-AKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~---dAlynLGnAy~~~g------~l~~d~~~-A~~~~ekA~~~FqkAleldP~Ne~Y~ks 70 (152)
.+++|+..|++.++++|+++ .|+|.+|+++..++ +...|..+ -...-.+|+..|++-|+.-|+.+-...+
T Consensus 84 ~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A 163 (243)
T PRK10866 84 DLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA 163 (243)
T ss_pred CHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 37899999999999998874 56999999875443 11111111 1224568999999999999998765555
Q ss_pred H
Q 031849 71 L 71 (152)
Q Consensus 71 L 71 (152)
.
T Consensus 164 ~ 164 (243)
T PRK10866 164 T 164 (243)
T ss_pred H
Confidence 4
No 140
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.021 Score=49.05 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
|.+|+..|..-|+-=|+. ++|+|-||.+++.+ ++|+.|...|.+++.--|+++ |||
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q-----------g~y~~Aa~~f~~~~k~~P~s~----------KAp 215 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ-----------GDYEDAAYIFARVVKDYPKSP----------KAP 215 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc-----------ccchHHHHHHHHHHHhCCCCC----------CCh
Confidence 689999999999988874 68999999999975 599999999999999999985 666
Q ss_pred hhhHHHHhhh
Q 031849 79 ELHMEIHKHG 88 (152)
Q Consensus 79 elh~e~~~~~ 88 (152)
|--+.|..-+
T Consensus 216 dallKlg~~~ 225 (262)
T COG1729 216 DALLKLGVSL 225 (262)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.08 E-value=0.024 Score=42.35 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fqk 56 (152)
+++|+..|++++...|+. ..+.++|+.++... ++|++|+..+++
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-----------~~~d~Al~~L~~ 110 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQ-----------GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHh
Confidence 789999999999877665 45788888888865 489999999866
No 142
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.07 E-value=0.0071 Score=54.69 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhc---CCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMV---SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 2 ieeAIs~le~AL~i---dP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~ 75 (152)
||-+...|++||.. +...+|.|||||-+..-- ++|-.|..||+-||.-||+|...-.+|.+.+
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-----------GD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-----------GDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-----------cchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 67788999999964 345789999999987653 5999999999999999999987777776553
No 143
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.02 Score=48.88 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCCCChH-----HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHD-----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~d-----AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.|++|.++|.+||++=|.-.. .|-|.|.|+.++ +.++.|++-.-|||+++|.+.
T Consensus 110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-----------~k~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-----------RKWESAIEDCSKAIELNPTYE 168 (271)
T ss_pred cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-----------hhHHHHHHHHHhhHhcCchhH
Confidence 379999999999999987543 466778888875 589999999999999999774
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.01 E-value=0.07 Score=39.79 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 3 LDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
..+...+++.++-+|+. ..+.+.|+.++... ++|++|...|+++++..|++.+
T Consensus 28 ~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-----------g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 28 AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-----------GDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhCCCHHH
Confidence 45566788999999998 77888899999865 4999999999999999887754
No 145
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.93 E-value=0.02 Score=53.00 Aligned_cols=81 Identities=26% Similarity=0.301 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcC--------CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc---------
Q 031849 2 ILDAISKLEEALMVS--------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--------- 64 (152)
Q Consensus 2 ieeAIs~le~AL~id--------P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N--------- 64 (152)
+++|+..|++||.|- |.-..+|.||+.+|.+.|. .++|+..++.|++.+++-+-.++..
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK----f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK----FAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 678999999999764 4455679999999998762 3555555555555555522122211
Q ss_pred -------------HHHHHHHHHHHcCchhhH-HHHh
Q 031849 65 -------------ELYQKSLEVAAKAPELHM-EIHK 86 (152)
Q Consensus 65 -------------e~Y~ksLe~~~Kapelh~-e~~~ 86 (152)
.+|+++++++.++|+-.- .+.+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 158888888877765432 4444
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.92 E-value=0.026 Score=54.74 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH---------------HH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------------LY 67 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------------~Y 67 (152)
.+++..||+|++++|+|+++.|+|+.=|..+ .+.+.|+++-++++++++.+. .|
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~-----------R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQ-----------RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 5789999999999999999999999999864 599999999999999999774 48
Q ss_pred HHHHHHHHcCchhhHH
Q 031849 68 QKSLEVAAKAPELHME 83 (152)
Q Consensus 68 ~ksLe~~~Kapelh~e 83 (152)
+.++.+.+-+.+=+..
T Consensus 530 ~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877766655554
No 147
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.033 Score=50.52 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCc-------------------------hHHHHHhHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPD-------------------------QDEAKEYFNKATLYFQ 55 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d-------------------------~~~A~~~~ekA~~~Fq 55 (152)
|+.+|...|+.+|+.-| +.|.+-.|..+|.+.- .|. ..||.+++++|+++|+
T Consensus 238 m~r~AekqlqssL~q~~-~~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 67788888888887665 4577777777776531 111 1357789999999999
Q ss_pred HHHHcCCCcH---------------------HHHHHHHHHHcCchhhHHHHhh-hhccc
Q 031849 56 QAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKH-GLGQQ 92 (152)
Q Consensus 56 kAleldP~Ne---------------------~Y~ksLe~~~Kapelh~e~~~~-~~~q~ 92 (152)
++++++|.|- -||+.|.|=..+|||..+|+-- +.+||
T Consensus 315 ~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 315 LVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence 9999999993 3999999999999999999863 34555
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.88 E-value=0.004 Score=51.78 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhc--CCCC----hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMV--SPNR----HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 2 ieeAIs~le~AL~i--dP~~----~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~ 75 (152)
+++|+..|++|+.+ .-.+ +.++.++|.+|... .+++++|+++|++|+++--.+.....+.++..
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~----------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ----------LGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT----------T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 57899999999975 2222 45788889998764 04888888888888887443333333333333
Q ss_pred cCchhhHH
Q 031849 76 KAPELHME 83 (152)
Q Consensus 76 Kapelh~e 83 (152)
+.-+++.+
T Consensus 160 ~~A~l~~~ 167 (282)
T PF14938_consen 160 KAADLYAR 167 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 149
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.85 E-value=0.045 Score=47.68 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHH-HhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLW-CLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAly-nLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|...|++|.+.+|++.-+.. ..+..+... +++++|...++++++.+|+|+.
T Consensus 134 ~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-----------g~~~~Al~~l~~~~~~~P~~~~ 188 (398)
T PRK10747 134 EARANQHLERAAELADNDQLPVEITRVRIQLAR-----------NENHAARHGVDKLLEVAPRHPE 188 (398)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCCHH
Confidence 56788888888888888754432 335555543 4888888888888888888863
No 150
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.84 E-value=0.039 Score=43.84 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCCCh---HHHHHhHHHHHhcccCCCch---HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRH---DTLWCLGNAHTSHAFLTPDQ---DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~---dAlynLGnAy~~~g~l~~d~---~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
.+++|+..|++.++..|++. +|+|.+|.++..+. ++. ..-.....+|+..|++-++.-|+.+-..++.+..
T Consensus 57 ~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 57 DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp -HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 37899999999999999976 58999999987642 111 1223567899999999999999997666655433
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.79 E-value=0.034 Score=51.42 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.++|++.|++++.++|+..-...|+|++|.+.| ++.+|+...++.+..+|+|+.
T Consensus 356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-----------~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGG-----------KPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-----------ChHHHHHHHHHHhhcCCCCch
Confidence 578999999999999999999999999999765 788999999999999999974
No 152
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.78 E-value=0.0063 Score=34.82 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031849 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~ 19 (152)
++++|+..|++||++||++
T Consensus 16 ~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 16 DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHHHSTTH
T ss_pred CchHHHHHHHHHHHHCcCC
Confidence 4789999999999999974
No 153
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.77 E-value=0.05 Score=37.10 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCC-ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~-~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
+++|+..+++++...+. ...++.+++..+...+ ++++|+.+|.+++...|.
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLG-----------KYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence 57888889999998888 6888888888887643 788999999999999997
No 154
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.77 E-value=0.041 Score=43.32 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCCChH---HHHHhHHHHHhccc--C--CCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHD---TLWCLGNAHTSHAF--L--TPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~d---AlynLGnAy~~~g~--l--~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ks 70 (152)
.+++|+..+++.|+++|+|++ |+|-.|.++..+.- + .+..+.=.....+|...|++-|+.=|+++-...+
T Consensus 62 ~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 62 DYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred CHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 378999999999999999875 58888999876520 0 0011111235789999999999999998765544
No 155
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.73 E-value=0.042 Score=53.92 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCC
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP 62 (152)
+|++|+-+|.+||+.+|.+-+-+|.-...|.+.| +..+|+++|++.+.++|
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G-----------~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTG-----------DLKRAMETFLQLLQLDP 272 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-----------hHHHHHHHHHHHHhhCC
Confidence 5889999999999999999999999999999865 89999999999999999
No 156
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.70 E-value=0.047 Score=50.48 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~ 75 (152)
++++|+..|++.-..-.+.-..+=..|..|.++| ++++|...|.+-|+.||+|-.|-..|+.+.
T Consensus 19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg-----------~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG-----------RKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4789999999999989999888888899999865 999999999999999999999988887765
No 157
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.037 Score=54.87 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
|-+.|+..|++||++||...+|+.-||..-..+ .| -+.+.+|+..+++|..+||+|+.
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~----~d----~~s~~~~~~ll~~ay~~n~~nP~ 271 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLNF----ND----SDSYKKGVQLLQRAYKENNENPV 271 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc----cc----hHHHHHHHHHHHHHHhhcCCCcH
Confidence 567899999999999999999999999886542 12 26899999999999999999984
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.61 E-value=0.046 Score=49.07 Aligned_cols=68 Identities=25% Similarity=0.258 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------HH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------LY 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------~Y 67 (152)
-.+||..++++|+.+|.+.+.+...+..+.+. ++++.|+++.++|+++.|++- .|
T Consensus 216 E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-----------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 216 EVEAIRLLNEALKENPQDSELLNLQAEFLLSK-----------KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 36899999999999999988888888888764 589999999999999999883 37
Q ss_pred HHHHHHHHcCchh
Q 031849 68 QKSLEVAAKAPEL 80 (152)
Q Consensus 68 ~ksLe~~~Kapel 80 (152)
+++|-...-.|=+
T Consensus 285 e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 285 ENALLALNSCPML 297 (395)
T ss_pred HHHHHHHhcCcCC
Confidence 7777666666633
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.60 E-value=0.083 Score=39.91 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHc
Q 031849 1 MILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 76 (152)
Q Consensus 1 mieeAIs~le~AL~idP~---~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~K 76 (152)
.+++|+..|++++.-.|+ +..+...++.++...| +.++|+..+-.++. +.-+.|++++..+..
T Consensus 53 ~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g-----------r~~eAl~~~l~~la--~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 53 RYDEALALLEEALEEFPDDELNAALRVFLALALYNLG-----------RPKEALEWLLEALA--ETLPRYRRAIRFYAD 118 (120)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 378999999999998888 8888888899988755 99999999999987 444599999877643
No 160
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.55 E-value=0.08 Score=46.13 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
+++|...+++.++.+|++.+++.-+|.+|... +++++|.+.+++.++..+.
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~-----------~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS-----------GAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999864 5999999999999977443
No 161
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.52 E-value=0.047 Score=54.66 Aligned_cols=78 Identities=19% Similarity=0.116 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhh
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh 81 (152)
.|+|.+.|-.|.+++|++--||-.|||.|.+.. | -.+++++..||+|++.+.|+.+ =.+-.++..|-+..+
T Consensus 53 le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~----d----Il~ld~~~~~yq~~~l~le~q~-~nk~~~lcKk~~d~~ 123 (1238)
T KOG1127|consen 53 LEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYN----D----ILDLDRAAKCYQRAVLILENQS-KNKGEALCKKFDDQY 123 (1238)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHHHHHccc----h----hhhhhHhHHHHHHHHHhhhhhh-hhHHHHHHHHHhhHH
Confidence 589999999999999999999999999998632 2 2489999999999999999766 333344455555554
Q ss_pred HHHHhhh
Q 031849 82 MEIHKHG 88 (152)
Q Consensus 82 ~e~~~~~ 88 (152)
-++-+|+
T Consensus 124 ~~fk~hl 130 (1238)
T KOG1127|consen 124 YQFKKHL 130 (1238)
T ss_pred HHHHHHH
Confidence 4444333
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.44 E-value=0.079 Score=36.13 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHH-HHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGN-AHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGn-Ay~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
+++|+..+++++..+++........+. ++... +++++|+.+|++++..+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 162 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYEL-----------GDYEEALELYEKALELDPE 162 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCC
Confidence 457788888888877776555555555 56543 4888888888888887773
No 163
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.40 E-value=0.08 Score=45.51 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~ 73 (152)
+++|-..|.+|+++.|+.+.++.|||.-|.- .++++.|..++.+|...-+.|..-+.+|.+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-----------~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLL-----------RGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHH-----------cCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 5889999999999999999999999999984 469999999999999999988877666643
No 164
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.40 E-value=0.066 Score=42.95 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH-HHHc
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLE-VAAK 76 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe-~~~K 76 (152)
|+..|.+|+.+.|..-..|..||..+... ++.=.|+-+|-|++-..--.+..+.+|. +++|
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~-----------~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ-----------GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc-----------cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999864 4888899999999988777788877774 4455
No 165
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.047 Score=49.03 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.+.|+..+++||+-||+...|-.-||.++.. +++|++|++.++++++.||+.
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-----------~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELA-----------KGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHh-----------ccchHHHHHHHHHHHHhChHH
Confidence 4678999999999999999999999999885 469999999999999999986
No 166
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.036 Score=51.32 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH-------------HH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-------------LY 67 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne-------------~Y 67 (152)
|-|.|...+|++|+++|..-.|..-+...+.. ++.++.++...+++|...|+.. .|
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-----------Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQV-----------EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-----------hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 34789999999999999999999999998876 4589999999999999999975 39
Q ss_pred HHHHHHHHcCchhhHHHHhhhhccc
Q 031849 68 QKSLEVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 68 ~ksLe~~~Kapelh~e~~~~~~~q~ 92 (152)
|++++-+.+|.-++++-++.+.|-+
T Consensus 488 Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHH
Confidence 9999999999999999888775544
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.36 E-value=0.016 Score=32.61 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031849 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~ 19 (152)
.+++|+..|+++|+++|++
T Consensus 16 ~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp -HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 3789999999999999986
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.032 Score=50.46 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCC-------C--------ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSP-------N--------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP-------~--------~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
|+.|+..|++|+..=+ + .--+|.||...|.++ .+|.+|+.+..++|+++|+|.
T Consensus 224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl-----------~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKL-----------KEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhh-----------hhHHHHHHHHHHHHhcCCCch
Confidence 6789999999885322 1 113588888888875 599999999999999999996
No 169
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.11 E-value=0.061 Score=49.77 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.+++|++..++||+.+|...|.|+..|.+|-..| ++++|.++.+.|-.+|+.+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G-----------~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAG-----------DLKEAAEAMDEARELDLAD 261 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhCChhh
Confidence 3789999999999999999999999999998765 9999999999999999976
No 170
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.10 E-value=0.083 Score=43.41 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCch------HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQ------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~------~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
.++++..|++|++++|+...+|+.+|..+...-...+.. ....+....|+.||-+|+...++ ..++...
T Consensus 274 ~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~-~~~~~~~ 348 (352)
T PF02259_consen 274 SDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK-YVRQDLP 348 (352)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC-chHHHhh
Confidence 578999999999999999999999999997642222111 13455778899999999999998 4444433
No 171
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.06 E-value=0.1 Score=47.38 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhh
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh 81 (152)
=+...|+.++..|+++..++-||..+.+. +.|.||.++|+.|+...|+-+.|-..=..+++.-|..
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-----------~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKN-----------KLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHh-----------hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 36678899999999999999999999974 5999999999999999999998887777777665543
No 172
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.068 Score=53.05 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCC-hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNR-HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~-~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+|+|-..|.+++..||++ --+++-||..|... ++++.|+.||++.++.+|+|.
T Consensus 323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~-----------~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR-----------GDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHHHHHHHHHHHccCCCCccccccchhHHHHHh-----------chHHHHHHHHHHHHHhCcchH
Confidence 344444444444444444 33444444444432 244444455555555555443
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.60 E-value=0.13 Score=43.87 Aligned_cols=76 Identities=18% Similarity=0.119 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH----HHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV----AAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~----~~Ka 77 (152)
+++|.-.|++..+.-+.....+..+++++..+ ++|++|.+.+++|++.+|+|+...-++=+ ..|.
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-----------~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-----------GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-----------T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 57899999997777678888888888888865 49999999999999999999876555532 2445
Q ss_pred chhhHHHHhhh
Q 031849 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pelh~e~~~~~ 88 (152)
+|-..+.-.++
T Consensus 252 ~~~~~~~l~qL 262 (290)
T PF04733_consen 252 TEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHC
T ss_pred hhHHHHHHHHH
Confidence 44444444444
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.58 E-value=0.034 Score=33.05 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=16.0
Q ss_pred HHHHHHHcCCCcHHHHHHHH
Q 031849 53 YFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 53 ~FqkAleldP~Ne~Y~ksLe 72 (152)
||+|||++||+|......|-
T Consensus 1 ~y~kAie~~P~n~~a~~nla 20 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLA 20 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHH
Confidence 69999999999986655553
No 175
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.57 E-value=0.059 Score=49.82 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
|-.|+..+.+|++++|....+|+.-|.+... .+.|.+|+.-|++...+.|+....++.+.-.
T Consensus 54 ~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-----------l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 54 FGGALHDALKAIELDPTYIKAYVRRGTAVMA-----------LGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred hhhHHHHHHhhhhcCchhhheeeeccHHHHh-----------HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 4567888888888888888888888888775 3588999999999999999888776666433
No 176
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.16 Score=44.05 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY----QKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y----~ksLe~~~Ka 77 (152)
|.+||++|-+||.+||..+.-|-|-...|.+ ..+|+.+..--.+|++++|+--.. ...+-.....
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk-----------~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLK-----------LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHH-----------hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 6899999999999999998888888888886 369999999999999999965432 2233445777
Q ss_pred chhhHHHHhh
Q 031849 78 PELHMEIHKH 87 (152)
Q Consensus 78 pelh~e~~~~ 87 (152)
+|+=..|++.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 8888888887
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.51 E-value=0.13 Score=49.80 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
++.|...|.+.+.++|++.++|.||.-+|..++ .-.+|-.++++|++-|=+|
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~-----------~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK-----------KKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh-----------hhHHHHHHHHHHhhcCCCC
Confidence 578999999999999999999999999999864 7788999999999888666
No 178
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.48 E-value=0.069 Score=46.22 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.+-|.+.|.+||++-|+...-|+.+|.-..+- ++++.|...|++.+++||++
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~eka-----------g~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKA-----------GEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhhhhc-----------ccHHHHHHHHHHHHcCCccc
Confidence 35688999999999999999999999876654 59999999999999999987
No 179
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=94.32 E-value=0.27 Score=33.43 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne----~Y~ksLe~~~Ka 77 (152)
+++|+....+|++.|-. .+.++|...|.+|++.|.+++..+|+.. .-++..+...++
T Consensus 5 ~~~A~~li~~Av~~d~~-------------------g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 5 LSKAKELISKALKADEA-------------------GDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46677777777655441 2446778899999999999999998643 355566777777
Q ss_pred chhhHHHHh
Q 031849 78 PELHMEIHK 86 (152)
Q Consensus 78 pelh~e~~~ 86 (152)
-+|...+..
T Consensus 66 E~lk~~~~~ 74 (77)
T smart00745 66 EEIKKSLLE 74 (77)
T ss_pred HHHHHHHhh
Confidence 777666543
No 180
>PRK10941 hypothetical protein; Provisional
Probab=94.22 E-value=0.29 Score=41.80 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQK 69 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~k 69 (152)
++.|..+.++.|.++|+++.-+--.|.+|..+| .+..|..-++.-|+..|+.+....
T Consensus 197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHHhCCCchhHHH
Confidence 688999999999999999999999999999864 899999999999999999875443
No 181
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.15 E-value=0.2 Score=47.33 Aligned_cols=63 Identities=25% Similarity=0.251 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc-------------cCCCchHHHH----------HhHHHHHHHHHHHHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHA-------------FLTPDQDEAK----------EYFNKATLYFQQAVD 59 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g-------------~l~~d~~~A~----------~~~ekA~~~FqkAle 59 (152)
-.||+.|-++..+-|+++..+--||..|-.-| ..+|-.-|-. ..+|+|+.||+||--
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998886543 1122222211 267999999999999
Q ss_pred cCCCcH
Q 031849 60 EEPSNE 65 (152)
Q Consensus 60 ldP~Ne 65 (152)
++|+-.
T Consensus 655 iqp~~~ 660 (840)
T KOG2003|consen 655 IQPNQS 660 (840)
T ss_pred cCccHH
Confidence 999875
No 182
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.18 Score=45.49 Aligned_cols=56 Identities=29% Similarity=0.271 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ 68 (152)
|+|||.++.--.+-+|++-.++-.||-.|+. ..+|+.|.+||++--.+-|+-+.||
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-----------~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYR-----------LQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhChHHHHHH
Confidence 7899999999999999999999999999986 3699999999999999999988665
No 183
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.84 E-value=0.23 Score=46.05 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
+++|...|+..+..-|+|+-.+--.|.++..+ ++.++|.+.|++|+.++|++..-+-++
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~-----------nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEA-----------NKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 57899999999999999987777778888875 489999999999999999986544443
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.82 E-value=0.12 Score=46.38 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.++.|+...++|+++.|+..++|+.|+.+|..+ ++||+|+-... ++=..|.++
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~-----------~d~e~ALlaLN-s~Pm~~~~~ 301 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQL-----------GDFENALLALN-SCPMLTYKD 301 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----------CCHHHHHHHHh-cCcCCCCcc
Confidence 368999999999999999999999999999975 49999996655 333334444
No 185
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.71 E-value=0.099 Score=48.35 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
|+.||..|-+||++||+.+.-+-|...||.+. ++|-.|+.=+.+|++++|..-
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~-----------e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKV-----------ESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheee-----------chhhhHHHHHHhhhhcCchhh
Confidence 78999999999999999988888888888874 699999999999999999874
No 186
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.64 E-value=0.1 Score=48.38 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhc--------CCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 1 MILDAISKLEEALMV--------SPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 1 mieeAIs~le~AL~i--------dP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
.||.|+..|++||++ .|.-...+-++|++|..+ ++|++|+..|++||.+-
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-----------~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-----------GKYDEAVNLYEEALTIR 271 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHH
Confidence 379999999999998 777777788899999975 49999999999999874
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.42 E-value=0.053 Score=49.52 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 23 lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+---||-|.++| .|++|++||-++++++|.|+.
T Consensus 100 iKE~GN~yFKQg-----------Ky~EAIDCYs~~ia~~P~NpV 132 (536)
T KOG4648|consen 100 IKERGNTYFKQG-----------KYEEAIDCYSTAIAVYPHNPV 132 (536)
T ss_pred HHHhhhhhhhcc-----------chhHHHHHhhhhhccCCCCcc
Confidence 456799999876 999999999999999999864
No 188
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.14 Score=44.46 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
++-......+||+++|+...++|-||+.+.. ...|++|+.+.+||..+
T Consensus 60 ~~~v~~dcrralql~~N~vk~h~flg~~~l~-----------s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 60 WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-----------SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-----------hccccHHHHHHHHHHHH
Confidence 3456677889999999999999999999864 35899999999999654
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.71 E-value=0.55 Score=42.19 Aligned_cols=85 Identities=25% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHH-hcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHcC
Q 031849 2 ILDAISKLEEAL-MVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL-~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---~Y~ksLe~~~Ka 77 (152)
.++|+..++.+| .-++.++|.+.-+|.+|-.. |+..+.. -.+.+++|+.+|.||++++|+.- -+--.|.+....
T Consensus 198 re~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~-~~~s~~~-d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 198 REKALQILLPVLESDENPDPDTLGLLGRIYKDL-FLESNFT-DRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD 275 (374)
T ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHHcCcc-chHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc
Confidence 478999999955 67778899999999999654 3321111 13359999999999999998642 244445666555
Q ss_pred chhhHHHHhhh
Q 031849 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pelh~e~~~~~ 88 (152)
-+-..|+++-+
T Consensus 276 ~~~~~el~~i~ 286 (374)
T PF13281_consen 276 FETSEELRKIG 286 (374)
T ss_pred ccchHHHHHHH
Confidence 55555665533
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.58 E-value=0.37 Score=43.65 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCCC----ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 1 MILDAISKLEEALMVSPN----RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 1 mieeAIs~le~AL~idP~----~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
.+++||+.|++++....+ ++-.+|.||..|..+ .+|++|.+||.+.++++.-
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-----------~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-----------HDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-----------chHHHHHHHHHHHHhcccc
Confidence 368999999998853322 567799999999864 4999999999999998764
No 191
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.52 E-value=0.47 Score=42.78 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC------------CCchHHH---------------HHhHHHHHHHHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL------------TPDQDEA---------------KEYFNKATLYFQ 55 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l------------~~d~~~A---------------~~~~ekA~~~Fq 55 (152)
+.||..|.+.++.||.--|++.-|||.|.+.|-. .||.+-. -+-+|.|-+.|.
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6899999999999999999999999999998721 1111110 125666666666
Q ss_pred HHHHcCC-CcHHHHHHHHHHHcCchhhHHHHh
Q 031849 56 QAVDEEP-SNELYQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 56 kAleldP-~Ne~Y~ksLe~~~Kapelh~e~~~ 86 (152)
.-+++.- --+.-|..+.++.+.-|-|.-|-.
T Consensus 132 ~L~de~efa~~AlqqLl~IYQ~treW~KAId~ 163 (389)
T COG2956 132 QLVDEGEFAEGALQQLLNIYQATREWEKAIDV 163 (389)
T ss_pred HHhcchhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6554322 123466667788887777765543
No 192
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.27 E-value=0.39 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHH--HHHHcCCCc
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--QAVDEEPSN 64 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fq--kAleldP~N 64 (152)
|.++-+|-.+... +++++|++.|+ -+..++|+|
T Consensus 2 e~~y~~a~~~y~~-----------~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQK-----------GKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHhcccC
Confidence 5678888888764 59999999955 999999876
No 193
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.19 E-value=0.03 Score=50.26 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.||..|..|++|||+.+.-|=--|.|.+.+ +++++|...|..|.++|=+-
T Consensus 166 ~airD~d~A~ein~Dsa~~ykfrg~A~rll-----------g~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 166 AAIRDCDFAIEINPDSAKGYKFRGYAERLL-----------GNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hhhhhhhhhhccCcccccccchhhHHHHHh-----------hchHHHHHHHHHHHhccccH
Confidence 456666666666666666666666666643 48888888888888776544
No 194
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=92.13 E-value=1 Score=30.93 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++.|+..+.+|++.|-.. +..+|...|.+|++.|.+++..+|+..
T Consensus 2 ~~~~A~~l~~~Av~~D~~g-------------------~y~eA~~~Y~~aie~l~~~~k~e~~~~ 47 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAG-------------------NYEEALRLYQHALEYFMHALKYEKNPK 47 (75)
T ss_pred hHHHHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 4677888888886544332 345677899999999999999999543
No 195
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=91.92 E-value=0.8 Score=30.61 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++.|+...++|++.|-.. +..+|.+.|.+|+++|.+++..+|+.+
T Consensus 1 y~~~A~~~~~~Av~~D~~g-------------------~~~~A~~~Y~~ai~~l~~~~~~~~~~~ 46 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAG-------------------NYEEALELYKEAIEYLMQALKSESNPE 46 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTT-------------------SHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred CHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 4788888888888766532 345677899999999999999997544
No 196
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.62 E-value=0.13 Score=28.97 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031849 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~ 19 (152)
.+++|+..|+++++++|++
T Consensus 16 ~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 16 DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp SHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHhhCCCC
Confidence 4789999999999999953
No 197
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.58 E-value=1.2 Score=33.93 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 3 LDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dA---lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
-+|....|+.+..++++..+ +.-=|.++..++..+-|.+--..++--|++||.+++.+.|+-
T Consensus 13 iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 13 IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 46889999999999998853 444499998888777777766678899999999999999976
No 198
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=0.72 Score=40.15 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----------
Q 031849 2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---------- 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~------~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---------- 65 (152)
.++|+.+|++|++|=-+- +.-+..||..|-+ -..++++|+.||++|-+---..+
T Consensus 89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs----------dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES----------DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh----------hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 367778888887652211 0112334444432 12477777777777766544333
Q ss_pred ---HHHHHHHHHHcCchhhHHHHhhhh
Q 031849 66 ---LYQKSLEVAAKAPELHMEIHKHGL 89 (152)
Q Consensus 66 ---~Y~ksLe~~~Kapelh~e~~~~~~ 89 (152)
.|.--||-+.+|+..+.++.++-+
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366667888899988888887665
No 199
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.48 E-value=0.8 Score=32.34 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhc----CCCC-----hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMV----SPNR-----HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~i----dP~~-----~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
|.+|++.|.+.+.. +... .-|+.+++.++..+| ++++|+..+++||++--++
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHH
Confidence 56777666666643 2222 467788888888765 9999999999999876543
No 200
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=91.37 E-value=0.76 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=25.1
Q ss_pred hHHHHHhH--HHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 20 HDTLWCLG--NAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 20 ~dAlynLG--nAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
++|.|+|| ..|.. |.. ....+.++|+.+|++|-+.+
T Consensus 1 a~A~~~lg~~~~~~~-g~~-----g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYN-GKG-----GVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHH-TST-----SSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhh-ccC-----CccccccchHHHHHHHHHcc
Confidence 57899999 65543 320 01347999999999998764
No 201
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=91.32 E-value=1.5 Score=29.75 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++.|+....+|++.|-. .+.++|...|.+|++.|.+++..+|+..
T Consensus 2 ~~~~a~~l~~~Av~~D~~-------------------g~~~~Al~~Y~~a~e~l~~~~~~~~~~~ 47 (75)
T cd02656 2 LLQQAKELIKQAVKEDED-------------------GNYEEALELYKEALDYLLQALKAEKEPK 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 456777777777655443 1345678899999999999999998643
No 202
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.61 Score=41.02 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
|=|+++...++|..+|.+-.|||..|.|+.. --+..+|..-|+++|+++|.=
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa-----------~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-----------VWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-----------hcCHHHHHHHHHHHHhcChhh
Confidence 4578999999999999999999999999974 348899999999999999964
No 203
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.87 E-value=0.39 Score=29.84 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=24.7
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
+++|-.||.+-.. .++|++|++=|++||++.
T Consensus 1 Adv~~~Lgeisle-----------~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 1 ADVYDLLGEISLE-----------NENFEQAIEDYEKALEIQ 31 (38)
T ss_pred CcHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHH
Confidence 3677888888764 579999999999998864
No 204
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.87 E-value=0.85 Score=43.98 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.|+|||.+|..||.++|+|-..|..|....... ++++-..+-=.+-|+++|.+
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm-----------Rd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM-----------RDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHhhhhh
Confidence 379999999999999999999999999887654 35555555555555555554
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.80 E-value=0.98 Score=33.18 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH-HHHHHHHHHH------cCchhhHHHHhhhh
Q 031849 44 KEYFNKATLYFQQAVDEEPSNE-LYQKSLEVAA------KAPELHMEIHKHGL 89 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne-~Y~ksLe~~~------Kapelh~e~~~~~~ 89 (152)
.+++++|+...++++.+||-|| .|+..+.+.. .|.+.+..+.+.+.
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4699999999999999999887 5666665554 34445555555554
No 206
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.66 E-value=0.27 Score=42.60 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++.|.+.|+-++++||.+.-|+-|.|.+++.- ++|+-|.+-|.+=..-||+++
T Consensus 115 fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~-----------gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 115 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-----------GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred chHHHHHhhhHhccCCcchHHHhccceeeeec-----------CchHhhHHHHHHHHhcCCCCh
Confidence 67899999999999999999999999998864 499999999999999999887
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=90.64 E-value=0.57 Score=38.93 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcC---CCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 1 MILDAISKLEEALMVS---PNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 1 mieeAIs~le~AL~id---P~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+++|+..|++|+++- ... .+.+-+++..+..+ ++|++|+++|++....--++.
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-----------~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-----------GRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------T-HHHHHHHHHHHHHTCCCHC
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHhhccc
Confidence 3689999999999752 222 23455667777764 499999999999998765554
No 208
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=90.62 E-value=0.14 Score=48.35 Aligned_cols=35 Identities=46% Similarity=0.598 Sum_probs=30.7
Q ss_pred cccccCCCCchhhhhhHHHHHHHHHHHHHhhhcCC
Q 031849 109 TSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHM 143 (152)
Q Consensus 109 ~~k~k~~sd~~ydv~gw~il~~~iv~w~~~a~~~~ 143 (152)
..||||+||=+|-|.|=||-++.+|+++|||-.-+
T Consensus 501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~ 535 (576)
T PTZ00441 501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV 535 (576)
T ss_pred ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence 34777889999999999999999999999997544
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.53 E-value=1.7 Score=37.49 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCC---ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPN---RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~le~AL~idP~---~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
+++|...|..+++-.|+ -+|+++-||.....+ ++-|+|...|++.++.=|+.+..+.+.+-.
T Consensus 194 y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-----------~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 194 YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-----------GNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68999999999986665 468899999999865 599999999999999999999887776543
No 210
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.51 E-value=0.4 Score=43.20 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+++||+.|-.||++||..+..|-..+.++.++. ....|+.-+..|+++||+..
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence 689999999999999999999999999999854 88899999999999999874
No 211
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.45 E-value=0.98 Score=37.10 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 2 ieeAIs~le~AL~idP~------~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
++.|...|++|++-... ....+|-+|..+.++| ++++|+.+|.+.+..--.+. ..+.++++
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~~~s~-~~~l~~~A 207 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSKKASK-EPKLKDMA 207 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCCCCCC-cHHHHHHH
Confidence 57899999999965433 2467899999999865 99999999999987544333 44444443
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.40 E-value=1.4 Score=37.94 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCC---hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH-----HHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNR---HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLE 72 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~---~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne-----~Y~ksLe 72 (152)
+++|++.|+......|-. ..+...|+-|+++- +++++|+.++++=+.+.|.|+ .|-+.|.
T Consensus 50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-----------~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-----------GEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 689999999999877764 57899999999974 599999999999999999986 4666664
No 213
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.38 E-value=2.2 Score=36.55 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCc-hHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 6 ISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPD-QDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 6 Is~le~AL~idP~~~dAlynLGnAy~~~g~l~~d-~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
...|++.++-||.+-++|-.|-.-.-..-....+ ..+.+.-.|+-+..|+|||+.||+++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~ 65 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE 65 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4579999999999999999988776544222222 45566788999999999999999997
No 214
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.16 E-value=1.8 Score=37.55 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhh
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh 81 (152)
++.+++.+++.+.++|.+..+|..|=.+|...| +...|...|+....++..-+-++|.-+.-+.-.+...+.+..+
T Consensus 169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g----~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~~~~~~~ 244 (280)
T COG3629 169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG----RQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEILRQDPLDN 244 (280)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC----CchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhccccccc
Confidence 578899999999999999999999999998765 5677778888888888888888887665444444444444444
Q ss_pred H
Q 031849 82 M 82 (152)
Q Consensus 82 ~ 82 (152)
.
T Consensus 245 ~ 245 (280)
T COG3629 245 K 245 (280)
T ss_pred c
Confidence 3
No 215
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.92 E-value=0.65 Score=43.08 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
++.|...+++.++++|++...|..|.|+|.+.| ++++|.+.|++..+..
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G-----------~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG-----------RQAEAAKVVETLKRKG 558 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC-----------CHHHHHHHHHHHHHcC
Confidence 578899999999999999999999999999865 8999999999877653
No 216
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=89.71 E-value=0.69 Score=26.08 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=26.3
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
.+|.++||..|.. |.- ...+.++|+.+|++|.+.+
T Consensus 1 ~~a~~~lg~~~~~-G~g------~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 1 AEAQYNLGQMYEY-GLG------VKKDLEKALEYYKKAAELG 35 (36)
T ss_pred CHHHHHHHHHHHc-CCC------CCcCHHHHHHHHHHHHHcc
Confidence 3689999999863 321 2458999999999998764
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.66 E-value=2.9 Score=33.86 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCCCh----HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHH-----HHHHHHcCCCcHHHHHHH-
Q 031849 2 ILDAISKLEEALMVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLY-----FQQAVDEEPSNELYQKSL- 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~----dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~-----FqkAleldP~Ne~Y~ksL- 71 (152)
.++|...|++||++.-... .+|...|..|..+| +.+.|..+|+.|.+. =.+-|++||--.+.-+.|
T Consensus 93 ~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g----~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa 168 (175)
T KOG4555|consen 93 DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG----NDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLA 168 (175)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC----chHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHH
Confidence 4789999999999876543 56888999999766 557777888888763 356788888766665555
Q ss_pred HHHHc
Q 031849 72 EVAAK 76 (152)
Q Consensus 72 e~~~K 76 (152)
++++|
T Consensus 169 ~~f~q 173 (175)
T KOG4555|consen 169 DAFDQ 173 (175)
T ss_pred HHHHh
Confidence 44443
No 218
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.55 E-value=0.41 Score=24.02 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 031849 1 MILDAISKLEEALMVSPNR 19 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~ 19 (152)
.+++|+..|+++++++|++
T Consensus 16 ~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 16 DYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHccCCCC
Confidence 3689999999999999864
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.28 E-value=0.29 Score=45.76 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCCh------HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRH------DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~------dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
|++||..-+.=|+|.-+.- .|+-||||+|.-+ ++|+.|+++|++++.
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-----------g~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-----------GNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-----------cccHhHHHHHHHHHH
Confidence 4555655555555544432 3566666666532 355666666655443
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.16 E-value=1.7 Score=37.40 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHH---HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 1 MILDAISKLEEALMVSPNRHDT---LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dA---lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+++|+...++-+.+.|.|+++ +|-.|.++.. ..+|...=...-.+|+..|+.-|+-=|+.+-
T Consensus 86 ~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~---~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 86 EYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF---QIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred cHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc---cCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 3789999999999999998775 7888999763 3455555556777899999999999998863
No 221
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=1.8 Score=39.28 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
-||..+.+||.++|.|..|+|.=..++.. +++|++|+...+.-+.++
T Consensus 137 s~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-----------Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 137 SALNDCSAALKLKPTHLKAYIRGAKCLLE-----------LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhhHHHHH-----------HHHHHHHHHHHhhhhhhh
Confidence 45666666666666666666666666553 345555555555444443
No 222
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.67 E-value=2.9 Score=29.33 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHH-HHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSL-EVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---~Y~ksL-e~~~Ka 77 (152)
.+.|+....+|++.|-.- +..+|...|.+|+++|.+++..+|+.. .|+.-+ +....|
T Consensus 3 ~~~a~~l~~~Ave~D~~g-------------------~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 3 ELAAKEVLKRAVELDQEG-------------------RFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred hHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 356777777776554322 335677799999999999999999654 233322 444555
Q ss_pred chhhHHH
Q 031849 78 PELHMEI 84 (152)
Q Consensus 78 pelh~e~ 84 (152)
=+|...|
T Consensus 64 E~Lk~~l 70 (77)
T cd02683 64 EAIKKRL 70 (77)
T ss_pred HHHHHHH
Confidence 5554444
No 223
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.40 E-value=3.7 Score=41.28 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcC-CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVS-PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE--EPSNELYQKSLEVAAK 76 (152)
Q Consensus 2 ieeAIs~le~AL~id-P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel--dP~Ne~Y~ksLe~~~K 76 (152)
+++|+..|++..+.+ +.+...|..|..+|.+. +++++|.+.|++..+. .|+...|...++.+.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-----------G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-----------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 455555555555544 22334444555555543 3666777777766655 5666666666655443
No 224
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=88.28 E-value=1.4 Score=40.98 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSLEVAAK 76 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle--ldP~Ne~Y~ksLe~~~K 76 (152)
+++|...|++..+ | +..+|..|..+|.+.| +.++|++.|++.++ +.|+...|.-.+..+.+
T Consensus 376 ~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G-----------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 376 MEDARNVFDRMPR--K-NLISWNALIAGYGNHG-----------RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred HHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 5677777776643 2 3456777777777654 78888888888765 57777777766654433
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.92 E-value=0.66 Score=43.43 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCC------ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVSPN------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~le~AL~idP~------~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
++.||+.+++-|.|.-+ -..|+|.|||+|..+ +..++|+.+-++++++
T Consensus 291 ~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-----------g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 291 VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-----------GEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHH
Confidence 57788888877766554 345788888888754 4778888887777654
No 226
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.61 E-value=4.4 Score=28.57 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC-CCcH----HHHHHHHHHHcC
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE-PSNE----LYQKSLEVAAKA 77 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld-P~Ne----~Y~ksLe~~~Ka 77 (152)
+.||....+|++.|-.. +..+|...|.+|+++|..++..+ +++. .-.+..+..+.|
T Consensus 4 ~~Ai~~a~~Ave~D~~g-------------------~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RA 64 (76)
T cd02681 4 RDAVQFARLAVQRDQEG-------------------RYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRA 64 (76)
T ss_pred HHHHHHHHHHHHHHHcc-------------------CHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 45777777777665432 22456668888888888886555 3332 123333444555
Q ss_pred chhhHH
Q 031849 78 PELHME 83 (152)
Q Consensus 78 pelh~e 83 (152)
-.|...
T Consensus 65 E~Lk~~ 70 (76)
T cd02681 65 QALHQL 70 (76)
T ss_pred HHHHHH
Confidence 444433
No 227
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.30 E-value=0.97 Score=32.03 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=9.2
Q ss_pred HhHHHHHHHHHHHHH
Q 031849 45 EYFNKATLYFQQAVD 59 (152)
Q Consensus 45 ~~~ekA~~~FqkAle 59 (152)
++|++|+++|..||+
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 466666666666655
No 228
>PLN03077 Protein ECB2; Provisional
Probab=87.09 E-value=2.5 Score=40.20 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH--cCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD--EEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle--ldP~Ne~Y~ksL 71 (152)
+++|...|++. +.+..+|..|-.+|..+| +.++|++.|++.++ +.|+...|--.+
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G-----------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHG-----------KGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 45666666554 344556666666666544 55666666665554 345555444444
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.14 E-value=1.1 Score=42.57 Aligned_cols=62 Identities=18% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHh---------cC---------CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALM---------VS---------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~---------id---------P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
|.-++-.|.+||+ +. -+.-+.+||+|.+|...| +.-.|.+||++|+..--.
T Consensus 299 y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g-----------rPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 299 YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG-----------RPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC-----------CcHHHHHHHHHHHHHHhc
Confidence 4567778888885 12 235688999999998654 899999999999998777
Q ss_pred cHH-HHHHHHHH
Q 031849 64 NEL-YQKSLEVA 74 (152)
Q Consensus 64 Ne~-Y~ksLe~~ 74 (152)
|+. +.+.-|++
T Consensus 368 nPrlWLRlAEcC 379 (696)
T KOG2471|consen 368 NPRLWLRLAECC 379 (696)
T ss_pred CcHHHHHHHHHH
Confidence 763 33333433
No 230
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.13 E-value=1 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHH
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fqk 56 (152)
.++++||.+|..+| ++++|...+++
T Consensus 2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQG-----------DPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence 57899999999765 88888877653
No 231
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.78 E-value=4.1 Score=28.87 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+.|+....+|++.|-.. +..+|.-+|.+|++.+.+++...||+..
T Consensus 4 ~~A~~~a~~AVe~D~~g-------------------r~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 4 EMARKYAINAVKAEKEG-------------------NAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 56777777777665443 2245666899999999999999998864
No 232
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.40 E-value=1.3 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHcCch
Q 031849 44 KEYFNKATLYFQQAVDEEPSN------ELYQKSLEVAAKAPE 79 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~N------e~Y~ksLe~~~Kape 79 (152)
++.|++|.++..+||..|-.. ..|++++++..++..
T Consensus 2 k~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 2 RGYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred chHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 357888888888888887653 257777766666553
No 233
>PLN03218 maturation of RBCL 1; Provisional
Probab=85.03 E-value=5.6 Score=40.05 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHc
Q 031849 46 YFNKATLYFQQAVD--EEPSNELYQKSLEVAAK 76 (152)
Q Consensus 46 ~~ekA~~~FqkAle--ldP~Ne~Y~ksLe~~~K 76 (152)
++++|++.|++..+ +.|+...|...+..+.+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 66777777776543 45666777777766654
No 234
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.63 E-value=2 Score=40.33 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcC------CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVS------PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~id------P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|+..|++++... .....++..+|.+|...| +.++|..++.+|+++-...-.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G-----------~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG-----------RKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCccch
Confidence 578999999999763 233457888999998765 889999999999998876543
No 235
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=83.49 E-value=2.5 Score=41.45 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccC-----------------------CCchHHHHHhHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFL-----------------------TPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l-----------------------~~d~~~A~~~~ekA~~~FqkAl 58 (152)
+|||+..||++|+.-|..|..|--||.++-+++-+ ..+.+|-.+..-+|-..+++|.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 68999999999999999999999999998765311 0111222236667778888888
Q ss_pred HcCCCcH-HHHHHHHHHHcCchhhHHHHhhhhcc
Q 031849 59 DEEPSNE-LYQKSLEVAAKAPELHMEIHKHGLGQ 91 (152)
Q Consensus 59 eldP~Ne-~Y~ksLe~~~Kapelh~e~~~~~~~q 91 (152)
--||+|. +|..++.|=-.+-. .+..++++++
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn--~~~a~~lmak 778 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGN--KEQAELLMAK 778 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 8888775 56666665433332 3344444443
No 236
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=83.38 E-value=3.8 Score=34.33 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH----HHHHH
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE----LYQKS 70 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne----~Y~ks 70 (152)
|...||++|+.-|++.+.+.+--.-+.. .++.+.|-..|++|+..-|.+. +|.+=
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~-----------~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIK-----------LNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH-----------TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH-----------hCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 5566666666666655544433333332 2366677777777777766655 55544
No 237
>PLN03077 Protein ECB2; Provisional
Probab=83.38 E-value=3.1 Score=39.51 Aligned_cols=47 Identities=9% Similarity=0.016 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
.+.|....+++++++|++...|..|+|+|...| ++++|.+..+.--+
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-----------~~~~a~~vr~~M~~ 719 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAG-----------KWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-----------ChHHHHHHHHHHHH
Confidence 466777888999999999999999999998754 89999999887654
No 238
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=83.16 E-value=4.5 Score=36.06 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhc--CCC---------------ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 3 LDAISKLEEALMV--SPN---------------RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~le~AL~i--dP~---------------~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
..||..|+.-+.. +|+ --.|++++|..|.+ ++++|..+-.++..+++++|++.++.--.|+
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K--~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~ 343 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSK--LITSDPKEQLENLEKSLEYYKWVVDYCEKHP 343 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHcc--ccCCChHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4678888888754 444 12589999999987 5789999999999999999999998655555
Q ss_pred H
Q 031849 66 L 66 (152)
Q Consensus 66 ~ 66 (152)
.
T Consensus 344 ~ 344 (371)
T PF12309_consen 344 E 344 (371)
T ss_pred h
Confidence 4
No 239
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.83 E-value=7.8 Score=34.17 Aligned_cols=33 Identities=30% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g 34 (152)
|+||.+.+++||.-++++++++-||=..-..+|
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 566777777777777777777777666655555
No 240
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=82.68 E-value=4.6 Score=28.22 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
++++|+..+.+|++.|-. .+..+|...|.+|+++|..++.-+++.
T Consensus 2 ~l~~A~~l~~~Ave~d~~-------------------~~y~eA~~~Y~~~i~~~~~~~k~e~~~ 46 (75)
T cd02677 2 YLEQAAELIRLALEKEEE-------------------GDYEAAFEFYRAGVDLLLKGVQGDSSP 46 (75)
T ss_pred hHHHHHHHHHHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 367888888888876644 123566778888888888888888654
No 241
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.40 E-value=5.3 Score=37.88 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
-+--..|.++|.++|++++.|-.-..=.... ..+++.|...|.++|..+|+++.
T Consensus 122 ~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~----------n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 122 GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI----------NLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred hHHHHHHHHHHHhCCCCchhHHhhhhhHHhh----------ccchHHHHHHHHHHhhcCCCChH
Confidence 3445679999999999999876544433332 34699999999999999999984
No 242
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.82 E-value=4.8 Score=35.49 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=39.9
Q ss_pred HHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 10 EEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 10 e~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
-..|..+|-|-+++..|+.++..+| |...|.+-.|+|+-+|++++-
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~g----d~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQG----DHAQANDLLERALFAFERAFH 75 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999865 889999999999999998764
No 243
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.78 E-value=2 Score=41.26 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
.|+..+..||++||-.-.|||.|..++..+ .++.+|++|-.-+....|.+..-+..+++..+.+
T Consensus 429 ~AlrDch~Alrln~s~~kah~~la~aL~el-----------~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi 492 (758)
T KOG1310|consen 429 LALRDCHVALRLNPSIQKAHFRLARALNEL-----------TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDI 492 (758)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHH-----------hhHHHhhhhHHHHhhcCchhhhhhhhhhccccch
Confidence 477778888888888888888888888764 4888899888888888887765555555554443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.65 E-value=3.5 Score=38.94 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCC--ChHHHHHhHHHHHhcccCCCchHHHHHhHHH------HHHHHHHHHHc--------CCCc-
Q 031849 2 ILDAISKLEEALMVSPN--RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNK------ATLYFQQAVDE--------EPSN- 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~--~~dAlynLGnAy~~~g~l~~d~~~A~~~~ek------A~~~FqkAlel--------dP~N- 64 (152)
.+|||..|.+.++.+|. +-..++||-++|..++. ..|...-...||+ |.-||-+||-. .|+.
T Consensus 275 ~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a 353 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAA 353 (539)
T ss_pred hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhh
Confidence 57999999999998886 45589999999987652 2223333345664 77788877722 2221
Q ss_pred ------HHHHHHHHHHHcCchhhHHHHhhhhcccc
Q 031849 65 ------ELYQKSLEVAAKAPELHMEIHKHGLGQQT 93 (152)
Q Consensus 65 ------e~Y~ksLe~~~Kapelh~e~~~~~~~q~~ 93 (152)
+.=..++|...+|-|.++.+-+-++++-.
T Consensus 354 ~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 354 SRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred hhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 12234566677777777777777776664
No 245
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.40 E-value=4.2 Score=36.94 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
.+|+|+.+|+.|++..--.+-.-||+..++.+. ++++.|+++.-..++
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-----------~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-----------RQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-----------hhHHHHHHHHHHHHH
Confidence 379999999999999999999999999999874 488888877655554
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.72 E-value=8.2 Score=35.11 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~d----AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
|.+|+..|-+.|+.+-.+.+ .|.|..-|...+ +||..|+.-..+|+.++|.|-
T Consensus 97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-----------~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-----------GNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHhcCcchh
Confidence 67899999999986555443 366667666643 699999999999999999994
No 247
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.68 E-value=5.3 Score=36.92 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHh-------cCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 2 ILDAISKLEEALM-------VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 2 ieeAIs~le~AL~-------idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
++.|+..|+++.+ .. ++.|.+.||.+|... +..+.. +.++|+.+|.+|-+++..+..|.-+.
T Consensus 265 ~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g-~~~~~~-----d~~~A~~~~~~aA~~g~~~a~~~lg~ 333 (552)
T KOG1550|consen 265 LESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQG-LGVEKI-----DYEKALKLYTKAAELGNPDAQYLLGV 333 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcC-CCCccc-----cHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 5778888888876 33 667899999999864 222111 89999999999999999998877665
No 248
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.38 E-value=1.6 Score=39.42 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
|+..-..+|+.+++...|||..|.++.. ..++++|.+-++.|...+|++..-.+.++-.
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~-----------~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKL-----------LKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHh-----------hhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 4444556778999999999999999985 3599999999999999999997666655433
No 249
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=13 Score=33.83 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH-----HHHHHc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS-----LEVAAK 76 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ks-----Le~~~K 76 (152)
++.||+.-.+|+..|-.. |- .+|...|.-|++||.-||.-+-+|+-.+.+ +|-.+.
T Consensus 7 l~kaI~lv~kA~~eD~a~-----nY--------------~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdR 67 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAK-----NY--------------EEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDR 67 (439)
T ss_pred HHHHHHHHHHHhhhcchh-----ch--------------HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHH
Confidence 467888888887554321 11 234447778999999999988777754444 466677
Q ss_pred CchhhHHHHhhh
Q 031849 77 APELHMEIHKHG 88 (152)
Q Consensus 77 apelh~e~~~~~ 88 (152)
|-+|-.-|..-.
T Consensus 68 AEkLK~yL~~~~ 79 (439)
T KOG0739|consen 68 AEKLKAYLKEKE 79 (439)
T ss_pred HHHHHHHHHhhc
Confidence 766665555443
No 250
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=79.16 E-value=10 Score=26.33 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
++.||..+.+|++.|-.. +.++|...|..|+++|..++..+++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g-------------------~y~eA~~lY~~ale~~~~~~k~e~~~ 46 (75)
T cd02684 3 LEKAIALVVQAVKKDQRG-------------------DAAAALSLYCSALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 467888888886544322 23556678888999999999888644
No 251
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.16 E-value=15 Score=29.47 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y 67 (152)
++|+...|+..--+.|+..+.-.+-|..+... ++|.+|+..|+...+-.|..+..
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-----------~~w~dA~rlLr~l~~~~~~~p~~ 80 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVR-----------GDWDDALRLLRELEERAPGFPYA 80 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-----------CCHHHHHHHHHHHhccCCCChHH
Confidence 45666677666679999999999999999875 49999999999987777766643
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.02 E-value=2.5 Score=39.90 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCC
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP 62 (152)
+.-|..=.+||++||+-++||..|+.-... ...|++..|.+|++.=+..+..+.
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~------Ti~Eae~l~rqAvkAgE~~lg~s~ 238 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEAS------TIVEAEELLRQAVKAGEASLGKSQ 238 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccccc------CHHHHHHHHHHHHHHHHHhhchhh
Confidence 455778899999999999999999875432 235566666666666666655543
No 253
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.85 E-value=8.3 Score=35.82 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKS 70 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ks 70 (152)
|+|||+.|.++|.-||+.-..-.++...|+++ ++|+-+.+...-=|..-|+.......
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl-----------DYydvsqevl~vYL~q~pdStiA~NL 224 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKL-----------DYYDVSQEVLKVYLRQFPDSTIAKNL 224 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc-----------chhhhHHHHHHHHHHhCCCcHHHHHH
Confidence 79999999999999999877777888888874 58888888888888889988755443
No 254
>PRK04841 transcriptional regulator MalT; Provisional
Probab=78.58 E-value=6 Score=37.21 Aligned_cols=48 Identities=23% Similarity=0.113 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCCh-----HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVSPNRH-----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~-----dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
+++|...++++++..|... .++.++|.++... +++++|..+|++|+++
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~-----------G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK-----------GELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHH
Confidence 6789999999998656543 3566778777654 4788888888888765
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.50 E-value=6.4 Score=28.74 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHH---------HHHHcCCCcHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ---------QAVDEEPSNELYQKSLE 72 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fq---------kAleldP~Ne~Y~ksLe 72 (152)
.++.+..|+..+..++.+.+.+.-|...|.+. +-++.+++++ +|+++-.++..|+.+..
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~------------~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY------------DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH------------CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHH
Confidence 56789999999999988887788888888753 3334444444 35555555556666666
Q ss_pred HHHcCchhhHHHHhhhhcc-cccCCCCCCCCCCCCcccccccCCCCchhhhhhHH
Q 031849 73 VAAKAPELHMEIHKHGLGQ-QTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWV 126 (152)
Q Consensus 73 ~~~Kapelh~e~~~~~~~q-~~~~~~~~~~~~~~~~~~~k~k~~sd~~ydv~gw~ 126 (152)
++.|. +.|.+.-+..+.. +.. ..-.+-.++..+.|+|+.+.+-.
T Consensus 91 l~~k~-~~~~~Al~~~l~~~~d~---------~~a~~~~~~~~~~~lw~~~~~~~ 135 (140)
T smart00299 91 LYKKD-GNFKDAIVTLIEHLGNY---------EKAIEYFVKQNNPELWAEVLKAL 135 (140)
T ss_pred HHHhh-cCHHHHHHHHHHcccCH---------HHHHHHHHhCCCHHHHHHHHHHH
Confidence 66665 3344444443322 110 00011223445677888876543
No 256
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=78.49 E-value=7.7 Score=38.81 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHcCCCcH
Q 031849 45 EYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne 65 (152)
+.+++|..||++|+..+|+-+
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred hhhhHHHHHHHHHHhhCCcHH
Confidence 489999999999999999843
No 257
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.13 E-value=2.5 Score=27.81 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGN 28 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGn 28 (152)
.|++|....+.+|+++|++..|.--.-.
T Consensus 16 ~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 16 EYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp -HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4789999999999999999888654433
No 258
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=77.94 E-value=5 Score=34.26 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
.+.....+.+++.|.. .-.|.|||+++.+| ++.+|...|++|+.
T Consensus 74 R~~Rea~~~~~~ApTv-qnr~rLa~al~elG-----------r~~EA~~hy~qals 117 (251)
T COG4700 74 RHLREATEELAIAPTV-QNRYRLANALAELG-----------RYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHHHHhhchhH-HHHHHHHHHHHHhh-----------hhhhhHHHHHHHhc
Confidence 3445556667777776 44788999998765 78888888888875
No 259
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.60 E-value=8.1 Score=33.52 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+.|...-++.|.+||+++..+---|.+|..+| .+.-|++-++..++.-|+.+.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-----------c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-----------CYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-----------CchhhHHHHHHHHHhCCCchH
Confidence 467888889999999999999999999998764 888899999999999998764
No 260
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.49 E-value=13 Score=34.36 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHH-HHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSL-EVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---~Y~ksL-e~~~Ka 77 (152)
+++-+...+.+|++||+.--+|+..--++.+.+. -+|.+=+...+++|++||.|- .||+-+ ++++.+
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~---------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH---------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 3556778899999999999999999999987653 278899999999999999885 577765 555555
Q ss_pred chhh
Q 031849 78 PELH 81 (152)
Q Consensus 78 pelh 81 (152)
-++|
T Consensus 162 ~~~~ 165 (421)
T KOG0529|consen 162 RNLE 165 (421)
T ss_pred cccc
Confidence 3333
No 261
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.00 E-value=9.6 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=32.2
Q ss_pred HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 031849 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 75 (152)
Q Consensus 23 lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~ 75 (152)
-++|..+|...| +++.|.+..++.+ .+.+.+.-.++-++..
T Consensus 2 kLdLA~ayie~G-----------d~e~Ar~lL~evl-~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMG-----------DLEGARELLEEVI-EEGDEAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcC-----------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Confidence 368899998765 9999999999999 4677777777766553
No 262
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=76.66 E-value=10 Score=37.43 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 8 KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 8 ~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
++..||+--..++-.+.-.|..+.+ ...+++|.+.|.|||.++|+|
T Consensus 805 ks~DALkkce~dphVllaia~lfw~-----------e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWS-----------EKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHH-----------HHHHHHHHHHHHHHHccCCcc
Confidence 3444555445555555555555543 235666666666666666665
No 263
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.55 E-value=15 Score=30.11 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHh---cCCCC--hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALM---VSPNR--HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~---idP~~--~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
+++||..|.-||. +-..+ -.|..+|-.|-... ...|.+..+....+|+++|++|++.+..
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR--~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR--DLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 6899999998883 22222 23555554444322 2346667778999999999999988754
No 264
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.09 E-value=14 Score=32.14 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc----HHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN----ELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N----e~Y~ksLe~ 73 (152)
++|||...++-++-+|.+...---|=..|+-. ++|++|..-.+-+-.++|+. ++||+.+.+
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcva-----------Gdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVA-----------GDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhc-----------chHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 68999999999999999988766665566543 59999999999999999987 589988744
No 265
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.94 E-value=19 Score=28.09 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.++.++-.++.++-.| ++..+.+++.++...| +.++|....+++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G-----------~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLG-----------DPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCcH
Confidence 4667788889998888 4588999999998755 8889999999999999933
No 266
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=75.44 E-value=7.5 Score=29.62 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
--|+++|.++..+.|..+-.+|.||.=+-+ ..+|+++..--+|+|.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s-----------~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGS-----------VKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHhccc
Confidence 358899999999999999999999988654 358999999888888764
No 267
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.19 E-value=8.8 Score=37.01 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHhHHHHHhc
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWCLGNAHTSH 33 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlynLGnAy~~~ 33 (152)
.|++|+....+.|.+.|+..+|++|-=+++...
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~ 59 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQL 59 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh
Confidence 378999999999999999999999998888754
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.11 E-value=7.1 Score=35.45 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
+++|...+++.++.=|+..=-+|.-|..+.. +++.++|+++|++|++..
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-----------~g~~~~Ai~~~~~a~~~q 297 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERL-----------KGNLEEAIESFERAIESQ 297 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----------hcCHHHHHHHHHHhccch
Confidence 4678999999999999988777888888876 459999999999999543
No 269
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.85 E-value=2.5 Score=29.96 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=8.8
Q ss_pred HHHhHHHHHHHHHHHHH
Q 031849 43 AKEYFNKATLYFQQAVD 59 (152)
Q Consensus 43 A~~~~ekA~~~FqkAle 59 (152)
..+++++|+.||++|++
T Consensus 18 ~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 18 KEGNAEDAITNYKKAIE 34 (75)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 33455555555555543
No 270
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.84 E-value=15 Score=31.46 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
.|.-++.|++||+.||++...+..+=.+... ..+-++..+-+++++..+|++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~-----------~~~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEK-----------VWDSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------hCCHHHHHHHHHHHHHHCCCCh
Confidence 3567899999999999887766554444443 2366777788999999999874
No 271
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=72.91 E-value=13 Score=31.07 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++.|-..|++|++-++-..+.|...+..-...+ .+.+.|...|+++++.-|++.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~----------~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCN----------KDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC----------S-HHHHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHCCCCH
Confidence 577888899998666667777776666633322 366678888888888888875
No 272
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.87 E-value=10 Score=20.05 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHcCCCcHH
Q 031849 46 YFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~ 66 (152)
++++|...|++++...|.+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 2 DIERARKIYERALEKFPKSVE 22 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChH
Confidence 678899999999999997653
No 273
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.71 E-value=20 Score=25.91 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
.++|+.+.++||+..++..+.+--||-+++.+. --+.|++++++-.+=++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~--------e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHM--------EWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 478999999999988887776665665554321 13477777777655444
No 274
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=72.53 E-value=3.6 Score=27.16 Aligned_cols=14 Identities=43% Similarity=1.198 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhh
Q 031849 126 VILAVGIVAWVGFA 139 (152)
Q Consensus 126 ~il~~~iv~w~~~a 139 (152)
|+..+||++|+||.
T Consensus 11 vvIil~If~~iGl~ 24 (49)
T PF11044_consen 11 VVIILGIFAWIGLS 24 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34457899999985
No 275
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.45 E-value=14 Score=33.29 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+.||++..+++|++||=+...+.-|=+.|..+| |...++.+|++=.+-.++=+-++=++..
T Consensus 295 ~neAi~l~qr~ltldpL~e~~nk~lm~~la~~g----D~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 295 PNEAIQLHQRALTLDPLSEQDNKGLMASLATLG----DEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred hHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc----cchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 679999999999999999999999999998766 6677777777777777777777666543
No 276
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=72.42 E-value=3.5 Score=37.49 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHH-hHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 1 MILDAISKLEEALMVSPNRHDTLWC-LGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 1 mieeAIs~le~AL~idP~~~dAlyn-LGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
||.+--..|-++|+.+|.+.|.|-. -.--|. ...+++.+-..|+++|..||+++.
T Consensus 122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~-----------~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELF-----------EIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCceeeeeeccchhh-----------hhccHHHHHHHHHhhhccCCCCch
Confidence 3455566789999999999987642 222222 245999999999999999999974
No 277
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=72.30 E-value=11 Score=34.59 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC-CchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT-PDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~-~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~ 73 (152)
+..|+..|++|-. -+.++.|.++.-|+.++|=+. .+..+....|.+|.++..||= +-.|..|+..|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN--~at~GKy~diLdn 402 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN--KATNGKYQDILDN 402 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH--HTT----HHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh--hccccchHHHHhh
Confidence 4678888998874 444555555555555554332 233446778999999999984 3457777777764
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.35 E-value=13 Score=32.78 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHh-cCCCCh---HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH------------
Q 031849 2 ILDAISKLEEALM-VSPNRH---DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE------------ 65 (152)
Q Consensus 2 ieeAIs~le~AL~-idP~~~---dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne------------ 65 (152)
+.+|.+..-+.+. ..|+.. ..|..-.++|.. -..||+|..|..||++-.-+|-
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRn-----------Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqa 77 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRN-----------AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQA 77 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHh-----------hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4555555555553 355533 335555666653 2488888888888886555441
Q ss_pred --------HHHHHHHHHHcCchhhHHH
Q 031849 66 --------LYQKSLEVAAKAPELHMEI 84 (152)
Q Consensus 66 --------~Y~ksLe~~~Kapelh~e~ 84 (152)
..-++..+++||.+++.|-
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 1223345667777777653
No 279
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.54 E-value=29 Score=24.69 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP 62 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP 62 (152)
|+.|....++||..|..- +.++|...|++|+...++++.+.-
T Consensus 5 ~~~A~~~I~kaL~~dE~g-------------------~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 5 YKQAFEEISKALRADEWG-------------------DKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHHHhhhhhcC-------------------CHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455666666666655431 345566677777777777777764
No 280
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.26 E-value=20 Score=29.07 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhc-ccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSH-AFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~-g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
.++|+..|+ ...+..+..+.|+||+.|..- | ...+.++|..+|++|.+..=.
T Consensus 93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g--------v~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 93 KTKAADWYR--CAAADGLAEALFNLGLMYANGRG--------VPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC--------cccCHHHHHHHHHHHHHcCCh
Confidence 356778887 445778889999999999742 2 234889999999999998543
No 281
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=70.15 E-value=9.1 Score=35.53 Aligned_cols=52 Identities=33% Similarity=0.395 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH--------------------HHHHHHHHHHcCchh
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE--------------------LYQKSLEVAAKAPEL 80 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne--------------------~Y~ksLe~~~Kapel 80 (152)
.++.-+|+|+..+ .-|++++++||+|+.+--+|. .|.|++-...||-||
T Consensus 123 q~~l~~~~Ahlgl-----------s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 123 QVSLSMGNAHLGL-----------SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhhHHHHhhhH-----------HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 4556677777654 488899999999988866552 377777777777665
Q ss_pred hHH
Q 031849 81 HME 83 (152)
Q Consensus 81 h~e 83 (152)
-..
T Consensus 192 v~s 194 (518)
T KOG1941|consen 192 VNS 194 (518)
T ss_pred HHh
Confidence 433
No 282
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=69.30 E-value=27 Score=29.94 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhh
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh 81 (152)
+.||...|+++|. -|--+|+--.||.|.... +.+++..|..-.++-.+-+|.- .+|.-|
T Consensus 105 ~~EA~~hy~qals-G~fA~d~a~lLglA~Aqf---------a~~~~A~a~~tLe~l~e~~pa~-----------r~pd~~ 163 (251)
T COG4700 105 YHEAVPHYQQALS-GIFAHDAAMLLGLAQAQF---------AIQEFAAAQQTLEDLMEYNPAF-----------RSPDGH 163 (251)
T ss_pred hhhhHHHHHHHhc-cccCCCHHHHHHHHHHHH---------hhccHHHHHHHHHHHhhcCCcc-----------CCCCch
Confidence 5689999999994 334444445555554432 3568999999999999988865 455555
Q ss_pred HHHHhhhhccc
Q 031849 82 MEIHKHGLGQQ 92 (152)
Q Consensus 82 ~e~~~~~~~q~ 92 (152)
+-+.|.+..||
T Consensus 164 Ll~aR~laa~g 174 (251)
T COG4700 164 LLFARTLAAQG 174 (251)
T ss_pred HHHHHHHHhcC
Confidence 55555555444
No 283
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=69.30 E-value=2.5 Score=30.19 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.5
Q ss_pred CCCCchhhhhhHHHH
Q 031849 114 KSSDLKYDIFGWVIL 128 (152)
Q Consensus 114 ~~sd~~ydv~gw~il 128 (152)
--++|-|||++|+|+
T Consensus 36 y~t~l~~DvL~~~ll 50 (77)
T PF11732_consen 36 YFTDLGYDVLTFCLL 50 (77)
T ss_pred hcchhhHHHHHHHHH
Confidence 346899999999986
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=69.27 E-value=19 Score=32.53 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHH-----------------------------------Hh
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAK-----------------------------------EY 46 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~-----------------------------------~~ 46 (152)
.+.||..|.++.+++|+... =-|+...+...|.-+.+..+.. ++
T Consensus 242 ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d 320 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD 320 (374)
T ss_pred HHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC
Confidence 57899999999999976532 2333333333343333332211 38
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 031849 47 FNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 47 ~ekA~~~FqkAleldP~N 64 (152)
+++|++++++++.++|..
T Consensus 321 ~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 321 YEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHhhcCCcc
Confidence 999999999999998754
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.56 E-value=10 Score=33.38 Aligned_cols=29 Identities=21% Similarity=0.049 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHT 31 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~ 31 (152)
+|.|..+|.+|.+--.++ .++|.-.-+|-
T Consensus 47 feKakdcLlkA~~~yEnn-rslfhAAKayE 75 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENN-RSLFHAAKAYE 75 (308)
T ss_pred HHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 566666777777544444 34555555543
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.31 E-value=22 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQK 69 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~k 69 (152)
..|+..|.+|-... ++++.++||..|.. |+ ....++++|..+|++|-+.......|.-
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-G~------Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~ 229 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEK-GL------GVPRDLKKAFRWYKKAAEQGDGAACYNL 229 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHc-CC------CCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36888888888776 89999999988864 21 1245999999999999999883334433
No 287
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.97 E-value=5.9 Score=28.03 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCch
Q 031849 46 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPE 79 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kape 79 (152)
++++|+..+++|++.|-. ..|.++++++..|.|
T Consensus 2 ~l~kai~Lv~~A~~eD~~-gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDEDEK-GNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHhhHh-hhHHHHHHHHHHHHH
Confidence 456777777777766652 234444444444433
No 288
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=9.7 Score=36.75 Aligned_cols=43 Identities=30% Similarity=0.159 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fqk 56 (152)
.+||.+.|++.++.||++.+++.+|=.||.+. +.++|..+=.+
T Consensus 474 ~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~------------d~eka~~l~k~ 516 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPNDTDLLVQLVTAYARL------------DPEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc------------CHHHHHHHhhc
Confidence 47999999999999999999999999999863 66666655443
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.19 E-value=22 Score=29.88 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHHhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 031849 43 AKEYFNKATLYFQQAVDEEPSNELYQKSLEV 73 (152)
Q Consensus 43 A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~ 73 (152)
++++-++|...|++|++.++ .+.-+..++|
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~-s~~~~~~lqm 200 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA-SPAAREILQM 200 (207)
T ss_pred HcCchHHHHHHHHHHHHccC-ChHHHHHHHh
Confidence 34588999999999999994 5556666655
No 290
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=66.33 E-value=5.9 Score=26.69 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhhHH
Q 031849 46 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 83 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh~e 83 (152)
.+++|+++..+|++.|- ...|..+++++.++.|.-+.
T Consensus 4 ~~~~A~~li~~Av~~d~-~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKALKADE-AGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 56788888888888876 34566666666666655444
No 291
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.14 E-value=5.4 Score=28.12 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHHHHHHc
Q 031849 44 KEYFNKATLYFQQAVDE 60 (152)
Q Consensus 44 ~~~~ekA~~~FqkAlel 60 (152)
.++|++|+.||++|++.
T Consensus 19 ~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 19 EGRYSEAVFYYKEAAQL 35 (76)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 34666666666666554
No 292
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.97 E-value=17 Score=33.33 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAl 58 (152)
+.+|.+.|+.||+.-|.. ..+--||-+|..+| +.++|.+++++++
T Consensus 344 w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g-----------~~~~A~~~r~e~L 388 (400)
T COG3071 344 WGKASEALEAALKLRPSA-SDYAELADALDQLG-----------EPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcC-----------ChHHHHHHHHHHH
Confidence 568999999999999987 44667899998765 7778888888777
No 293
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.86 E-value=26 Score=32.69 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCChH-HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc-H-------------H
Q 031849 2 ILDAISKLEEALMVSPNRHD-TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN-E-------------L 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~d-AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N-e-------------~ 66 (152)
|+.||+.|+-.+.++.+-.+ .---+|-.|..+ ++|++|+.-|.-+.+.+--+ + +
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhL-----------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-----------GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-----------ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 67899999999977666542 222234444443 59999999998877644323 2 5
Q ss_pred HHHHHHHHHcCchh
Q 031849 67 YQKSLEVAAKAPEL 80 (152)
Q Consensus 67 Y~ksLe~~~Kapel 80 (152)
|.++..+.+|+|.-
T Consensus 107 Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKT 120 (557)
T ss_pred HHHHHHHHhhCCCC
Confidence 88888888888853
No 294
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=65.68 E-value=5.6 Score=27.86 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHcCC
Q 031849 49 KATLYFQQAVDEEP 62 (152)
Q Consensus 49 kA~~~FqkAleldP 62 (152)
+|++++++|++.|-
T Consensus 5 ~a~~l~~~Ave~D~ 18 (77)
T cd02683 5 AAKEVLKRAVELDQ 18 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555554
No 295
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=65.51 E-value=33 Score=33.12 Aligned_cols=52 Identities=19% Similarity=0.015 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.+|+-.+..+|..||++..++-|||++....| ..+.-+.+.-+.|+...|+|
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~----------~~~~~~~~~~~~a~~~~~~~ 135 (620)
T COG3914 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDG----------LQFLALADISEIAEWLSPDN 135 (620)
T ss_pred hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh----------hHHHHHHHHHHHHHhcCcch
Confidence 36777889999999999999999999986532 34444555555566666666
No 296
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=65.00 E-value=20 Score=30.99 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g 34 (152)
+-+|+..||.++..+|.+++...-|-..|..+|
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG 231 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG 231 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999999876
No 297
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=64.76 E-value=9.9 Score=35.32 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCChHH------HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC
Q 031849 2 ILDAISKLEEALMVSPNRHDT------LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dA------lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~ 63 (152)
++.+.+.||.|+.+.-++.|+ +.-||..|+. ..+++||+.+--||+++--+
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-----------l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-----------LKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-----------HHhhhHHhhhhHhHHHHHHh
Confidence 688999999999998888886 4567777775 36999999999999988543
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.76 E-value=40 Score=29.91 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC---cHHHHHHHHHHH
Q 031849 6 ISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS---NELYQKSLEVAA 75 (152)
Q Consensus 6 Is~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~---Ne~Y~ksLe~~~ 75 (152)
+..+++.+.-||+++++-+.|+..|-- .++.|.|++.+-.-|..|=. ++.-+..+++++
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~-----------~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHL-----------VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 356888999999999999999999975 35999999999888888763 334444455553
No 299
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=64.74 E-value=6.6 Score=26.86 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhh
Q 031849 47 FNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 47 ~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh 81 (152)
+++|+.++++|++.|- ...|..+++++.++.|+-
T Consensus 3 ~~~A~~l~~~Av~~D~-~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 3 LQKAIELVKKAIEEDN-AGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 4566677777766654 233444444444444433
No 300
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.52 E-value=31 Score=30.65 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH--HHHHH------------HHHHHcCchhhHHHHh
Q 031849 44 KEYFNKATLYFQQAVDEEPSNE--LYQKS------------LEVAAKAPELHMEIHK 86 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne--~Y~ks------------Le~~~Kapelh~e~~~ 86 (152)
.++|-++++.--..|..+|.|. .|+.+ -+-+.+..|||+-+..
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 5799999999999999999996 44444 2444555566655544
No 301
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.28 E-value=14 Score=33.11 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH----HHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ----KSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~----ksLe~~~Ka 77 (152)
+-+|...|.+.+.-||.++.|-.|-...+..+ ++..+|++-.+.+++++|.+-+-. ..-.|++-+
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-----------g~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~ 336 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYL-----------GKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELE 336 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHH-----------HHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHH
Confidence 45788899999999999999999998888765 488999999999999999864322 223455555
Q ss_pred chhhHHHHhhh
Q 031849 78 PELHMEIHKHG 88 (152)
Q Consensus 78 pelh~e~~~~~ 88 (152)
=.-|+..-+.+
T Consensus 337 Ys~~~~~k~~l 347 (366)
T KOG2796|consen 337 YSRSMQKKQAL 347 (366)
T ss_pred hhhhhhHHHHH
Confidence 55555554444
No 302
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.83 E-value=40 Score=29.86 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
++|--.|++.-+.-|-....+..+.+++.. .++|++|....+.||+-+++++...-++-+.
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~-----------~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-----------LGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHH-----------hcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 445555555544333333334333444332 3599999999999999999988766666443
No 303
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.45 E-value=8.4 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhhH
Q 031849 46 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM 82 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh~ 82 (152)
..++|+..+++|++.|- +..|..+++++..+.++-+
T Consensus 2 ~l~~A~~l~~~Ave~d~-~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 2 YLEQAAELIRLALEKEE-EGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred hHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 35677788888877775 4566666666666665543
No 304
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=63.41 E-value=37 Score=32.22 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAK 76 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~----Y~ksLe~~~K 76 (152)
|.+++..-.=..+++| .+.+|-.||..+... .+|++|.+||+. +-|+++. -+|++-++.|
T Consensus 478 y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~-----------k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 478 YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN-----------KRYQEAWEYLQK---LPPNERMRDSKVQKALALCQK 541 (549)
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH-----------hhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHH
Confidence 4455555556679999 999999999999863 599999999997 6664443 3555555433
No 305
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.14 E-value=5.2 Score=26.58 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHcCC
Q 031849 48 NKATLYFQQAVDEEP 62 (152)
Q Consensus 48 ekA~~~FqkAleldP 62 (152)
++|+.+.++|++.|-
T Consensus 3 ~~A~~~~~~Av~~D~ 17 (69)
T PF04212_consen 3 DKAIELIKKAVEADE 17 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 306
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.13 E-value=30 Score=30.66 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g 34 (152)
+.+|...|..++..+|++.++...|+.+|...|
T Consensus 150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g 182 (304)
T COG3118 150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAG 182 (304)
T ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC
Confidence 567888999999999999999999999998654
No 307
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.39 E-value=14 Score=37.15 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHh-HHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHcCc
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCL-GNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEVAAKAP 78 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynL-GnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne---~Y~ksLe~~~Kap 78 (152)
+.|.+..-.+++.+-..+.-.||| |.+|-.. |+..+.++|. ..+.|++.|.||++.+|.-- -|--.|-.+-+--
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDm-F~~S~ytDa~-s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM-FIASNYTDAE-SLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhh-hhccCCcchh-hHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhc
Confidence 456667777777766665556676 9998554 6666666665 78899999999999999532 2444455555666
Q ss_pred hhhHHHHhhhhccc
Q 031849 79 ELHMEIHKHGLGQQ 92 (152)
Q Consensus 79 elh~e~~~~~~~q~ 92 (152)
|-..|+++-++--+
T Consensus 338 ens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLN 351 (1226)
T ss_pred cchHHHHHHHHHHH
Confidence 66677777665444
No 308
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.98 E-value=34 Score=33.88 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCCC------hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHH
Q 031849 2 ILDAISKLEEALMVSPNR------HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~------~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ 68 (152)
|+.+++.|+..|..-|.+ +...-+|...|.. .++.|+|.++++.|-+.||.|.+-+
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-----------L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-----------LEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHHhhccccHHHH
Confidence 788999999999765543 2234455666654 4799999999999999999997644
No 309
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.38 E-value=19 Score=33.30 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHA 34 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g 34 (152)
|++|...-++||+|||.+.-|.--+.-++.+.|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~ 223 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNG 223 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Confidence 789999999999999999999888888887654
No 310
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=57.79 E-value=40 Score=35.85 Aligned_cols=31 Identities=19% Similarity=0.008 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHH-hcCCCChHHHHHhHHHHH
Q 031849 1 MILDAISKLEEAL-MVSPNRHDTLWCLGNAHT 31 (152)
Q Consensus 1 mieeAIs~le~AL-~idP~~~dAlynLGnAy~ 31 (152)
.+|.|.+..+||| .||+.-.+-.-|+-.||.
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~l 1504 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYL 1504 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHH
Confidence 3789999999999 699987765555555544
No 311
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=56.59 E-value=2.6 Score=33.14 Aligned_cols=25 Identities=44% Similarity=0.733 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCC
Q 031849 127 ILAVGIVAWVGFAKSHMPPPPPTPP 151 (152)
Q Consensus 127 il~~~iv~w~~~a~~~~p~~~~~~~ 151 (152)
+|++|.|+..-+-++..|.|+|+||
T Consensus 101 vLagGavAfsivRRs~~~ePsp~pP 125 (133)
T PF10814_consen 101 VLAGGAVAFSIVRRSSRPEPSPLPP 125 (133)
T ss_pred HHhccceEEEEeecCCCCCCCCCCC
Confidence 3444445554455666677777766
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.52 E-value=56 Score=28.73 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHh---cCCCChHHHHHh-HHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 1 MILDAISKLEEALM---VSPNRHDTLWCL-GNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 1 mieeAIs~le~AL~---idP~~~dAlynL-GnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
+++.||.+||+|=+ .+.....|--|+ -.|-+ ....++|.+|++.|++...-.-+|.+-+.++
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y---------aa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY---------AAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 47889999999875 344444443333 22322 3346899999999999999988998766665
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=55.52 E-value=60 Score=26.51 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+.+++++..|++|++++|+++.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHH
Confidence 36889999999999999998764
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=55.04 E-value=19 Score=28.54 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=28.2
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
-+++-.||.-|.+.| ++++|+++|.++.+-.-..
T Consensus 36 r~~~~~l~~~~~~~G-----------d~~~A~k~y~~~~~~~~~~ 69 (177)
T PF10602_consen 36 RMALEDLADHYCKIG-----------DLEEALKAYSRARDYCTSP 69 (177)
T ss_pred HHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhhhcCCH
Confidence 468899999999754 9999999999988876544
No 315
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.94 E-value=1.1e+02 Score=27.22 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH---HHHH-HHHHHcCc
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL---YQKS-LEVAAKAP 78 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~---Y~ks-Le~~~Kap 78 (152)
+.|....+.+|.+||-+-..|-..-+++..++ -+..+=+++..+.++.+|.|-. +|.. +|+.. +|
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~----------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~ 128 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLM----------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DP 128 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-Cc
Confidence 35777888899999998877777777777653 4788899999999999999963 5544 46665 77
Q ss_pred h-hhHHHHhhhhccc
Q 031849 79 E-LHMEIHKHGLGQQ 92 (152)
Q Consensus 79 e-lh~e~~~~~~~q~ 92 (152)
+ -.+||-+-++.+-
T Consensus 129 s~rELef~~~~l~~D 143 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDD 143 (318)
T ss_pred ccchHHHHHHHHhcc
Confidence 7 6777777776543
No 316
>PF11753 DUF3310: Protein of unknwon function (DUF3310); InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=54.49 E-value=12 Score=25.08 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fqk 56 (152)
|.|+.. +.+. .....=||+|||.-.. +-.+.+ ...+|.+||..|.++
T Consensus 14 e~id~~-~~~~---~~~~~~f~~gnaiKY~-~R~~~K-~~~eDl~KA~~Yl~r 60 (60)
T PF11753_consen 14 ECIDFI-EQFT---EEQFLGFCLGNAIKYL-WRAGKK-NGIEDLKKAKWYLDR 60 (60)
T ss_pred cHHHHH-HHhc---chhhhhHHHHHHHHHH-HHHccc-CcHHHHHHHHHHHcC
Confidence 345555 4444 3334567899997322 122344 447799999888653
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.20 E-value=48 Score=30.02 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCChH----HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHD----TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~d----AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.++|++.|+++|++.+++.+ |+-.+=.++..+| ...+..+.|.+-+.|.+-||..|=+.
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~----~~~eMm~~Y~qlLTYIkSAVTrNySE 105 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG----NYKEMMERYKQLLTYIKSAVTRNYSE 105 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHHHHHHhccccH
Confidence 47999999999999999865 4444444444443 34666778888888888888877543
No 318
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=54.12 E-value=65 Score=28.60 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=42.9
Q ss_pred HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCC-c----HHHHHHHHHHHcCchh
Q 031849 22 TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPS-N----ELYQKSLEVAAKAPEL 80 (152)
Q Consensus 22 AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~-N----e~Y~ksLe~~~Kapel 80 (152)
+|..+|..+..++.-..+...|.+.|-+|..||.-|----.+ + ..++++.+++.++.++
T Consensus 100 ~W~~~a~~~~~~A~~~~~~~~A~~~~lrAa~yy~~A~~~~~~~~~~~~~~~~~~~~~f~~a~~~ 163 (414)
T PRK05077 100 EWAKQAMEWQQKACAEEDPEEAGRHWLHAANLYSIAAYPHLKGDELAEQAQVLANRAYEEAAKR 163 (414)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHHhh
Confidence 888999998776644457778889999999999998743222 1 2456677777777665
No 319
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=54.01 E-value=11 Score=32.92 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=23.5
Q ss_pred ChHHHHHhHHHHHhcccCCCc-----hHHHHHhHHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d-----~~~A~~~~ekA~~~FqkAl 58 (152)
+...+||+|-.|+..|...+. ..+|-..|..|.-||+-.-
T Consensus 110 ka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~ 154 (353)
T cd09246 110 KAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLR 154 (353)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999888754321 2223345555555554443
No 320
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=53.99 E-value=10 Score=33.69 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=24.2
Q ss_pred CChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHH
Q 031849 18 NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 18 ~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkA 57 (152)
++...+||+|-.|+..|....... .+..++|..+||+|
T Consensus 104 EkasVLFNigAl~Sq~aa~~~r~~--~eglK~A~~~Fq~A 141 (350)
T cd09244 104 EKASVLFNIGALYTQIGAKQDRTT--EEGIEAAVDAFQRA 141 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHH
Confidence 345789999999998875322111 23466676777665
No 321
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.19 E-value=15 Score=24.70 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchh
Q 031849 47 FNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 47 ~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapel 80 (152)
+++|+.+.++|++.|-. ..|..+++++..+.|+
T Consensus 3 ~~~a~~l~~~Av~~D~~-g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 3 LQQAKELIKQAVKEDED-GNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 34555555555555432 3344444444444433
No 322
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=50.45 E-value=33 Score=26.92 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
+++|+..+..-+.+++++-+.+.++|..+-. .|.++....++-+.+-.+..++
T Consensus 89 w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~-----~D~~~Q~k~i~l~~~~L~~~~~ 141 (170)
T PF09548_consen 89 WEEAVEKLLKESALKKEDKEILLELGKSLGY-----SDREMQEKHIELYLEQLEQQLE 141 (170)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778899999999999998742 4667777777766666665544
No 323
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=50.39 E-value=75 Score=27.55 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCC-----Cc-hH-----HHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLT-----PD-QD-----EAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~-----~d-~~-----~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
-.+.++.=++-.|++.-|+..+|+.+...++.. .+ .. .+....++|..+|.||++++|.--.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~ 134 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVA 134 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 345566667899999999999999887664321 00 00 1345899999999999999998753
No 324
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=50.04 E-value=14 Score=32.69 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=23.3
Q ss_pred ChHHHHHhHHHHHhcccCCCc-----hHHHHHhHHHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d-----~~~A~~~~ekA~~~FqkAle 59 (152)
+...+||+|-.|+.+|..... ..+|-..|..|.-||+-.-+
T Consensus 113 ka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e 158 (361)
T cd09239 113 EASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLRE 158 (361)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999888743211 11133355555555554333
No 325
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=49.65 E-value=11 Score=32.44 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=23.9
Q ss_pred hHHHHHhHHHHHhcccCCC-----chHHHHHhHHHHHHHHHHHHHc
Q 031849 20 HDTLWCLGNAHTSHAFLTP-----DQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~-----d~~~A~~~~ekA~~~FqkAlel 60 (152)
.-++||+|.+|+.+|...+ +..+|-..|.+|..+|+-.-+.
T Consensus 107 a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~ 152 (377)
T PF03097_consen 107 ACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLREN 152 (377)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999988875441 1222334555555555544444
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.09 E-value=27 Score=32.37 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
++.|...|.+|-... ..+.||||..|.+ |. ..+. +..|.++|++|.+.+...
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~-g~------g~~~-~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEH-GE------GIKV-LHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhc-Cc------Ccch-hHHHHHHHHHHHhcCchh
Confidence 567899999999877 9999999999864 32 1345 899999999999888764
No 327
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=48.78 E-value=27 Score=26.27 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHHHHc--CCCcHHHHHHH-HHHHcCchhhHHHHhhhhccc
Q 031849 45 EYFNKATLYFQQAVDE--EPSNELYQKSL-EVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 45 ~~~ekA~~~FqkAlel--dP~Ne~Y~ksL-e~~~Kapelh~e~~~~~~~q~ 92 (152)
++|.+|+.-+++|++. +|.++..+.++ .-++.+-||=-.+-|..+..+
T Consensus 4 ~~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t~ElaWK~lK~~L~~~ 54 (124)
T PF08780_consen 4 ENFKKALSRLEEALEKYEDPLSELERDGVIQRFEFTFELAWKTLKDYLEYE 54 (124)
T ss_dssp HHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999998 89999888776 777888888777777765554
No 328
>PF15100 TMEM187: TMEM187 protein family
Probab=48.14 E-value=15 Score=31.47 Aligned_cols=26 Identities=31% Similarity=0.699 Sum_probs=23.9
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhh
Q 031849 115 SSDLKYDIFGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 115 ~sd~~ydv~gw~il~~~iv~w~~~a~ 140 (152)
..++.+||++|..|+-|.|=|+=++-
T Consensus 77 ~a~Y~k~vfa~mAl~YgpVQwlri~T 102 (242)
T PF15100_consen 77 RARYLKDVFAWMALHYGPVQWLRIAT 102 (242)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67899999999999999999998875
No 329
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.00 E-value=38 Score=33.40 Aligned_cols=72 Identities=28% Similarity=0.328 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCChHH-HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH----------------
Q 031849 4 DAISKLEEALMVSPNRHDT-LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL---------------- 66 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dA-lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~---------------- 66 (152)
.|+.+|++|+.+.|...++ +.||.+++...| ..-.|.....++|.++-..++
T Consensus 625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~-----------~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYG-----------LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred HHHHHHHHHhccChhhhcccHHHHHHHHHHhh-----------hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 5899999999999986654 899999998765 455788999999999865543
Q ss_pred -----HHHHHHHHHcCchhhHHHHh
Q 031849 67 -----YQKSLEVAAKAPELHMEIHK 86 (152)
Q Consensus 67 -----Y~ksLe~~~Kapelh~e~~~ 86 (152)
.+.+++...+-||....|-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 45555556666665544443
No 330
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=47.39 E-value=20 Score=24.87 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHcCC
Q 031849 47 FNKATLYFQQAVDEEP 62 (152)
Q Consensus 47 ~ekA~~~FqkAleldP 62 (152)
+++|+..+++|++.|-
T Consensus 3 l~~Ai~lv~~Av~~D~ 18 (75)
T cd02684 3 LEKAIALVVQAVKKDQ 18 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666654
No 331
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=47.33 E-value=14 Score=32.27 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkA 57 (152)
...++||+|..|+..|...... -.+..++|..+||+|
T Consensus 106 ka~VLfNiaal~s~~A~~~~~~--~~~~~K~A~~~fq~A 142 (348)
T cd09242 106 KASVLFNIGALLSQLAAEKYRE--DEDDLKEAITNLQQA 142 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHH
Confidence 3457999999998877432200 123445555555554
No 332
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=47.29 E-value=6.3 Score=32.42 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 031849 123 FGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 123 ~gw~il~~~iv~w~~~a~ 140 (152)
.||.||++.|++|+.+-|
T Consensus 36 yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQK 53 (190)
T ss_dssp ------------------
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 499999999999886544
No 333
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=46.57 E-value=26 Score=27.15 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=18.3
Q ss_pred CchhhhhhHHHHHHHHHHHH-HhhhcCC-CCCCC
Q 031849 117 DLKYDIFGWVILAVGIVAWV-GFAKSHM-PPPPP 148 (152)
Q Consensus 117 d~~ydv~gw~il~~~iv~w~-~~a~~~~-p~~~~ 148 (152)
|++. |+|.|++++||-+|+ ++.|..+ ||+|.
T Consensus 73 ewk~-v~~~~~~~i~~s~~~~~~~r~~~~~~~P~ 105 (136)
T cd00922 73 EWKT-VFGGVLAFIGITGVIFGLQRAFVYGPKPH 105 (136)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 5554 677788778866664 3444444 54444
No 334
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=46.28 E-value=5 Score=23.78 Aligned_cols=24 Identities=25% Similarity=0.803 Sum_probs=17.0
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCCC
Q 031849 122 IFGWVILAVG-IVAWVGFAKSHMPP 145 (152)
Q Consensus 122 v~gw~il~~~-iv~w~~~a~~~~p~ 145 (152)
|.-|.=++=. .++|+-+|++.+|+
T Consensus 3 vaaWlPfaraaAIGW~p~a~~~lP~ 27 (28)
T PF11601_consen 3 VAAWLPFARAAAIGWLPLAQQPLPP 27 (28)
T ss_dssp CHTTHHHHHHHHTTTSSTTSSSSSS
T ss_pred chhhhhHHHHHhhcceeeccCCCCC
Confidence 4557666544 78888888888884
No 335
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=45.79 E-value=16 Score=27.75 Aligned_cols=16 Identities=31% Similarity=1.039 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 031849 121 DIFGWVILAVGIVAWVGFA 139 (152)
Q Consensus 121 dv~gw~il~~~iv~w~~~a 139 (152)
-.+-|++|+ +.|+||+
T Consensus 83 ~~LPW~LL~---lSW~gF~ 98 (103)
T PF11169_consen 83 SWLPWGLLV---LSWIGFI 98 (103)
T ss_pred cchhHHHHH---HHHHHHH
Confidence 467899886 6788886
No 336
>PRK10941 hypothetical protein; Provisional
Probab=45.73 E-value=33 Score=29.31 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=26.1
Q ss_pred HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 23 lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+-||=.+|.. .+++++|+.|-++.+.++|+++
T Consensus 184 l~nLK~~~~~-----------~~~~~~AL~~~e~ll~l~P~dp 215 (269)
T PRK10941 184 LDTLKAALME-----------EKQMELALRASEALLQFDPEDP 215 (269)
T ss_pred HHHHHHHHHH-----------cCcHHHHHHHHHHHHHhCCCCH
Confidence 4456666654 4699999999999999999986
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.31 E-value=1.1e+02 Score=24.52 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHH-HH---HHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSL-EV---AAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksL-e~---~~Ka 77 (152)
++|+...++..=-+.|+..+.-.+-|..+... ++|++|+..|....+-.| +.-|-|+| -. +...
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r-----------g~w~eA~rvlr~l~~~~~-~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIAR-----------GNYDEAARILRELLSSAG-APPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHc-----------CCHHHHHHHHHhhhccCC-CchHHHHHHHHHHHhcCC
Confidence 35555555555569999999999999999875 499999999999766555 43444443 11 1345
Q ss_pred chhhHHHH
Q 031849 78 PELHMEIH 85 (152)
Q Consensus 78 pelh~e~~ 85 (152)
|+-|..=.
T Consensus 94 p~Wr~~A~ 101 (153)
T TIGR02561 94 AEWHVHAD 101 (153)
T ss_pred hHHHHHHH
Confidence 55554433
No 338
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=45.13 E-value=18 Score=32.77 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=23.1
Q ss_pred ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQA 57 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkA 57 (152)
+...+||+|-.|+..|...+.. ..+-.+.|..+||+|
T Consensus 105 KasVLFNigAL~Sqlaa~~~r~--t~eGlK~A~~~FQ~A 141 (384)
T cd09248 105 KGSVLFNIGALHTQIGARQDRS--CTEGTRRAIDAFQRA 141 (384)
T ss_pred HHHHHHhHHHHHHHHHhhccCC--ChHHHHHHHHHHHHH
Confidence 4568999999999887532211 123455666666664
No 339
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=45.06 E-value=16 Score=27.66 Aligned_cols=12 Identities=42% Similarity=1.113 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHH
Q 031849 126 VILAVGIVAWVG 137 (152)
Q Consensus 126 ~il~~~iv~w~~ 137 (152)
++|.+|+|+|++
T Consensus 40 ~~lv~glvgW~~ 51 (104)
T PF11460_consen 40 ALLVLGLVGWVS 51 (104)
T ss_pred HHHHHHHHHHHh
Confidence 588899999986
No 340
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=44.76 E-value=37 Score=30.60 Aligned_cols=70 Identities=23% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHh-cCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhh
Q 031849 3 LDAISKLEEALM-VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 81 (152)
Q Consensus 3 eeAIs~le~AL~-idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh 81 (152)
+|++..++++.+ |...-+.| +||..|+-+. ++...++.+ -.++....++++.++++..-|.+
T Consensus 74 ~e~~~~le~a~~~l~~tRPTA-vNLfwal~rm----------~~~~~~~~~------v~~~~~~~~~eA~~i~~ED~e~n 136 (346)
T COG0182 74 EEFIEALEKAAETLKSTRPTA-VNLFWALDRM----------LNAAKEAIE------VKEPKESILQEAEEIAEEDLEAN 136 (346)
T ss_pred HHHHHHHHHHHHHHhhcCchh-HHHHHHHHHH----------HHHHhhccc------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 567777777773 44444444 3466665321 111111211 13555678999999999999999
Q ss_pred HHHHhhhh
Q 031849 82 MEIHKHGL 89 (152)
Q Consensus 82 ~e~~~~~~ 89 (152)
..+++.++
T Consensus 137 ~~iG~~G~ 144 (346)
T COG0182 137 RAIGENGA 144 (346)
T ss_pred HHHHHHHH
Confidence 99999874
No 341
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=44.32 E-value=17 Score=34.83 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHH
Q 031849 121 DIFGWVILAVGIVAWV 136 (152)
Q Consensus 121 dv~gw~il~~~iv~w~ 136 (152)
-|+||||.+|++|+-|
T Consensus 319 KIlG~vitaVsvvAAv 334 (593)
T PRK15374 319 KVLGALLTIVSVVAAV 334 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999999998854
No 342
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=43.55 E-value=14 Score=22.08 Aligned_cols=20 Identities=30% Similarity=0.797 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHH--HHhhhc
Q 031849 121 DIFGWVILAVGIVAW--VGFAKS 141 (152)
Q Consensus 121 dv~gw~il~~~iv~w--~~~a~~ 141 (152)
-+..|+ |+.=+++| ||++|.
T Consensus 5 ~lgcWi-lvLfvatwsdvglcKK 26 (29)
T PF11587_consen 5 HLGCWI-LVLFVATWSDVGLCKK 26 (29)
T ss_dssp TTTTHH-HHHHHHHHHHHTTSSS
T ss_pred cccHHH-HHHHHHHHhhhccccC
Confidence 355674 45567788 999996
No 343
>KOG4449 consensus Translocase of outer mitochondrial membrane complex, subunit TOM7 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.31 E-value=18 Score=24.40 Aligned_cols=19 Identities=47% Similarity=1.127 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCC
Q 031849 123 FGWVILAVGIVAWVGFAKSHMPP 145 (152)
Q Consensus 123 ~gw~il~~~iv~w~~~a~~~~p~ 145 (152)
-|||=| |.|+|||+..-||
T Consensus 24 ~G~IP~----VlyLG~a~~a~~P 42 (53)
T KOG4449|consen 24 YGWIPL----VLYLGFAFGARPP 42 (53)
T ss_pred echhhH----HHHhhhhhcCCCC
Confidence 388766 7799999976664
No 344
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=43.13 E-value=1.9e+02 Score=26.40 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHcCchhh
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN-ELYQKSLEVAAKAPELH 81 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N-e~Y~ksLe~~~Kapelh 81 (152)
..++..+++=..-.=++...||-+-..|+.. ++...+-+.|++--|.+--+. ....++||+..
T Consensus 161 ~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~----------le~qk~tv~~Leaev~~~K~~Y~~slrnLE~IS------ 224 (426)
T KOG2008|consen 161 MGRMRQLEKKNKRAIKKSRPYFELKAKYTVQ----------LEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMIS------ 224 (426)
T ss_pred HHHHHHHHHHhHHHHhhcchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH------
Confidence 4556666666655556777888888888753 567777788888777766543 33445555543
Q ss_pred HHHHhhhhcccccCC
Q 031849 82 MEIHKHGLGQQTMGA 96 (152)
Q Consensus 82 ~e~~~~~~~q~~~~~ 96 (152)
.+||.-..+|-+|+-
T Consensus 225 d~IHeeRssqs~~ap 239 (426)
T KOG2008|consen 225 DEIHEERSSQSAMAP 239 (426)
T ss_pred HHHHHhhhhhhccCC
Confidence 577777777665533
No 345
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=43.10 E-value=57 Score=24.82 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHHHHcCCCcHH-HHHHH-HHHHcCchhhHHHHhhhhccc
Q 031849 45 EYFNKATLYFQQAVDEEPSNEL-YQKSL-EVAAKAPELHMEIHKHGLGQQ 92 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~-Y~ksL-e~~~Kapelh~e~~~~~~~q~ 92 (152)
++|++|+.-+++|++.+|.|++ ++.++ .-++-+-||=-.+-|-.+..+
T Consensus 3 ~nf~kAl~~L~~a~~~~~~~~~~~~~g~IqrFE~t~ELaWK~lK~~L~~~ 52 (123)
T TIGR01987 3 ESFEQALMQLSDANWFDLTNDITIIDGAIQKFEFTFELAWKLMKRYLAQE 52 (123)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHc
Confidence 6999999999999999999997 77775 566666666555555444444
No 346
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.35 E-value=78 Score=28.07 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHh-cCCCCh-HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALM-VSPNRH-DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~le~AL~-idP~~~-dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
|..|...|++.+. +.++.. +.+..|..+|...-. -+|++|.++|++.+..
T Consensus 147 y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~---------fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 147 YGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDR---------FDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHH
Confidence 6789999999887 455553 578888888865432 3788888888887765
No 347
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=41.94 E-value=46 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHh----cCCCC----hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 2 ILDAISKLEEALM----VSPNR----HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 2 ieeAIs~le~AL~----idP~~----~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
++-|...|.|+=. .+|+. ++.+||.|.-..+.+ .++++|...+++|+++
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~----------~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK----------DKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC----------CChHHHHHHHHHHHHH
Confidence 4567777776653 34543 455788888777532 2888888888888887
No 348
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.67 E-value=1.1e+02 Score=28.45 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchh
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 80 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapel 80 (152)
+-|+.-..||+|||+-+.||..|..--. .-.-+|...|++||+-- ...|+++..+...++.-
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLAEEEa-------------~Ti~~AE~l~k~ALka~--e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLAEEEA-------------TTIVDAERLFKQALKAG--ETIYRQSQQCQHQSPQH 263 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhhhhhh-------------hhHHHHHHHHHHHHHHH--HHHHhhHHHHhhhccch
Confidence 4467778899999999999887765432 25566777788877653 44677777766666543
No 349
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=41.46 E-value=53 Score=17.16 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=19.4
Q ss_pred HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 23 LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 23 lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
|..|=++|.+. +++++|.+.|++-.+.
T Consensus 3 y~~li~~~~~~-----------~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKM-----------GQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHcc-----------chHHHHHHHHHHHhHC
Confidence 44555667654 4999999999986653
No 350
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.32 E-value=87 Score=24.35 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhccc
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAF 35 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~ 35 (152)
++-|.+.++.++..||++.+|..-+..+|..+|.
T Consensus 86 ~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 86 YQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999998774
No 351
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.23 E-value=40 Score=30.93 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.++.|+|...|+.|+.++|+|+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~ 151 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQ 151 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHH
Confidence 36899999999999999999974
No 352
>PHA01080 hypothetical protein
Probab=41.18 E-value=26 Score=25.43 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHH-HHhhhc
Q 031849 122 IFGWVILAVGIVAW-VGFAKS 141 (152)
Q Consensus 122 v~gw~il~~~iv~w-~~~a~~ 141 (152)
+||||++...+-+. |.|||.
T Consensus 56 gF~~V~~lgyls~YaVkiakk 76 (80)
T PHA01080 56 GFMAVFALGYLSTYAVYIGKK 76 (80)
T ss_pred hHHHHHHhhhhHHHHHHHHHH
Confidence 58999887777755 888885
No 353
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=41.15 E-value=81 Score=30.82 Aligned_cols=55 Identities=20% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
-.||..|-+++..-|..+..|.|..-++.+.++. ++.-.|+.-...|+++||...
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~--------~d~~~AlrDch~Alrln~s~~ 445 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR--------GDSYLALRDCHVALRLNPSIQ 445 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc--------ccHHHHHHhHHhhccCChHHH
Confidence 4689999999999999999999999999988773 566677877889999999874
No 354
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.09 E-value=1.1e+02 Score=25.42 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCC--hHHHHH--hHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH-----cCCCcHHH
Q 031849 4 DAISKLEEALMVSPNR--HDTLWC--LGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD-----EEPSNELY 67 (152)
Q Consensus 4 eAIs~le~AL~idP~~--~dAlyn--LGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle-----ldP~Ne~Y 67 (152)
+.+...++.|--...+ ..++|. .|.-|+...-+. +.++-..--++|.++|++|++ +.|.|+++
T Consensus 96 eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~r 167 (236)
T PF00244_consen 96 EIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFD-SGDEKKEAAEKALEAYEEALEIAKKELPPTHPLR 167 (236)
T ss_dssp HHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHhccccccccccc-cchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHH
Confidence 4445555544222222 233333 288886654433 333445567888899998886 78999863
No 355
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=41.09 E-value=25 Score=29.71 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=15.9
Q ss_pred CchhhhhhHHHHHHHHHHHH
Q 031849 117 DLKYDIFGWVILAVGIVAWV 136 (152)
Q Consensus 117 d~~ydv~gw~il~~~iv~w~ 136 (152)
-++==|||||+.++.||+=+
T Consensus 56 Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 56 GIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34556999999999988766
No 356
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=40.59 E-value=26 Score=31.76 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne 65 (152)
.+..-+|+..|.+|+.+-|+=|
T Consensus 32 ~G~l~dai~fYR~AlqI~~diE 53 (366)
T KOG2997|consen 32 DGSLYDAINFYRDALQIVPDIE 53 (366)
T ss_pred cCcHHHHHHHHHhhhcCCchHH
Confidence 3456666666666666666644
No 357
>PF13041 PPR_2: PPR repeat family
Probab=40.55 E-value=83 Score=18.97 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Q 031849 22 TLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE--EPSNELYQKSLEVA 74 (152)
Q Consensus 22 AlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel--dP~Ne~Y~ksLe~~ 74 (152)
.|..|=.+|.+. +++++|.+.|++-.+. .|+.-.|.-.+..+
T Consensus 5 ~yn~li~~~~~~-----------~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 5 TYNTLISGYCKA-----------GKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHC-----------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455555666654 5999999999998874 67777787776654
No 358
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=39.47 E-value=23 Score=30.93 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=22.7
Q ss_pred hHHHHHhHHHHHhcccCCCc-----hHHHHHhHHHHHHHHHHHHH
Q 031849 20 HDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d-----~~~A~~~~ekA~~~FqkAle 59 (152)
...+||+|..|+..|...+. ..+|-..|.+|..||+-..+
T Consensus 106 a~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~ 150 (355)
T cd09241 106 ANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQ 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999887743322 12233344445554444444
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.35 E-value=1.3e+02 Score=25.18 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=24.8
Q ss_pred ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.++..+-|+.-|++ .+.+||+..+-+||++.+.+
T Consensus 140 t~elq~aLAtyY~k------------rD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 140 TAELQYALATYYTK------------RDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred CHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhcCCC
Confidence 55667777777764 38888888888888877655
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=39.07 E-value=94 Score=27.04 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH-HHHHHHHHHH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNE-LYQKSLEVAA 75 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne-~Y~ksLe~~~ 75 (152)
.++++.+++.+++-++++|-|| .|+..++.+.
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYL 198 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3589999999999999999775 5555555543
No 361
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=38.92 E-value=66 Score=25.50 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
+++++..+...+.+++++.+.+-+||..+- ..|.+.....++-+.+..++.++
T Consensus 90 w~~~~~~~~~~~~L~~~d~eiL~~lg~~LG-----~~D~e~Q~k~i~L~~e~L~~~~~ 142 (171)
T PRK08307 90 WEKALEENWKNTALKKEDIEILLQFGKTLG-----QSDREGQQKHIRLALEHLEREEE 142 (171)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----cCcHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888899999999999998875 35777777777777777766443
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.85 E-value=89 Score=29.08 Aligned_cols=41 Identities=22% Similarity=0.117 Sum_probs=32.5
Q ss_pred ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHH--------HHHHcCCCcHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ--------QAVDEEPSNELYQKS 70 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fq--------kAleldP~Ne~Y~ks 70 (152)
.+-.+|.+|.-+... ++.+.|..+|+ .+....+.+|+|--+
T Consensus 403 ~~~~~yL~gl~~q~~-----------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 403 YPLLHYLLGLYYQST-----------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred hHHHHHHHHHHHHHc-----------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 366788888888754 59999999998 788888899876544
No 363
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=38.67 E-value=16 Score=33.15 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=13.9
Q ss_pred ChHHHHHhHHHHHhccc
Q 031849 19 RHDTLWCLGNAHTSHAF 35 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~ 35 (152)
....+||+|-.|+..|.
T Consensus 105 kasVLFNigAl~Sqlaa 121 (385)
T cd09249 105 KASILFNIGALYTQIGT 121 (385)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 34679999999998874
No 364
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=38.17 E-value=33 Score=29.89 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=23.9
Q ss_pred hHHHHHhHHHHHhcccCCCc---hHHHHHhHHHHHHHHHHHHH
Q 031849 20 HDTLWCLGNAHTSHAFLTPD---QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d---~~~A~~~~ekA~~~FqkAle 59 (152)
..++||+|.+|..++..... ..+|-..|.+|.-||+-..+
T Consensus 113 ~~vLfn~aa~~s~~A~~~~~~e~~K~A~~~l~~AAG~f~~l~~ 155 (346)
T cd09247 113 GMVLFLYGAALRERASEVLPTEDFKEAATHLRRAAGVFEFLAH 155 (346)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999877643221 22344456666666655543
No 365
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=37.96 E-value=1.6e+02 Score=24.87 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCCh--HHHHHh--HHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH-----cCCCcHHH
Q 031849 4 DAISKLEEALMVSPNRH--DTLWCL--GNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD-----EEPSNELY 67 (152)
Q Consensus 4 eAIs~le~AL~idP~~~--dAlynL--GnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle-----ldP~Ne~Y 67 (152)
+-+..++.-|--+..++ .++|.- |--|+.+.-+..+ ++-++--++|.++|++|++ +.|.|+.+
T Consensus 98 eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~-~e~~~~~~~a~~aY~~A~e~a~~~L~pt~Pir 169 (244)
T smart00101 98 GILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTG-AERKEAAENTLVAYKSAQDIALAELPPTHPIR 169 (244)
T ss_pred HHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHccCCCCCHHH
Confidence 44555555553333332 333332 7777665433322 2334567899999999986 56899853
No 366
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.95 E-value=1e+02 Score=28.72 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHh---cCCC-ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 2 ILDAISKLEEALM---VSPN-RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 2 ieeAIs~le~AL~---idP~-~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
+.-||.+|+-+++ +.|. ...+++.||.+|... -+++++|..+.+||+.+.-.|.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e----------T~n~~~Ae~~L~k~~~l~~~~~ 94 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE----------TENLDLAETYLEKAILLCERHR 94 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhccccc
Confidence 5568999999983 3332 455688889999753 2589999999999988886553
No 367
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=37.83 E-value=28 Score=30.32 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=23.0
Q ss_pred ChHHHHHhHHHHHhcccCCCc-----hHHHHHhHHHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPD-----QDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d-----~~~A~~~~ekA~~~FqkAle 59 (152)
+.-.+||+|..|+..|....- ..+|-..|..|..+|+-.-+
T Consensus 118 ka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e 163 (346)
T cd09240 118 KVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKE 163 (346)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999887643211 12233455555555544433
No 368
>PF13446 RPT: A repeated domain in UCH-protein
Probab=37.83 E-value=50 Score=21.49 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCCcH-HHHHHHHHHHcC
Q 031849 48 NKATLYFQQAVDEEPSNE-LYQKSLEVAAKA 77 (152)
Q Consensus 48 ekA~~~FqkAleldP~Ne-~Y~ksLe~~~Ka 77 (152)
+.-+.+|+..+..+|.+. .|+++|....+.
T Consensus 20 d~Ii~~f~~~~~~~P~~~~~~r~AL~~Ia~~ 50 (62)
T PF13446_consen 20 DFIISAFQSKVNDDPSQKDTLREALRVIAES 50 (62)
T ss_pred HHHHHHHHHHHHcChHhHHHHHHHHHHHHHH
Confidence 457889999999999774 689999877553
No 369
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=36.36 E-value=28 Score=21.37 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhh
Q 031849 126 VILAVGIVAWVGFAK 140 (152)
Q Consensus 126 ~il~~~iv~w~~~a~ 140 (152)
|||.+|.++.+||-|
T Consensus 6 i~L~l~ga~f~~fKK 20 (33)
T PF10855_consen 6 IILILGGAAFYGFKK 20 (33)
T ss_pred ehhhhhhHHHHHHHH
Confidence 678899999999988
No 370
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=36.25 E-value=40 Score=22.47 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=6.6
Q ss_pred CCCchhhh
Q 031849 115 SSDLKYDI 122 (152)
Q Consensus 115 ~sd~~ydv 122 (152)
.++|.||.
T Consensus 4 ~~pF~YDy 11 (50)
T PF02038_consen 4 DDPFYYDY 11 (50)
T ss_dssp CSGGGGCH
T ss_pred CCCCccch
Confidence 49999994
No 371
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=36.16 E-value=81 Score=17.60 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHT 31 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~ 31 (152)
+.++.-.++|..||++..+|...=-++.
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 3467788999999999999887655543
No 372
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=35.61 E-value=33 Score=28.44 Aligned_cols=17 Identities=18% Similarity=0.638 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHh
Q 031849 122 IFGWVILAVGIVAWVGF 138 (152)
Q Consensus 122 v~gw~il~~~iv~w~~~ 138 (152)
.++|+++++.++.||.|
T Consensus 228 ~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899998888889866
No 373
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=35.13 E-value=1.2e+02 Score=30.77 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+++|.+.||+++..+|+ .+-++.|=++|.+-+-+ +.+-.-|++.|+ .-|++.-
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y-------k~qQkaa~~LyK----~~pk~~y 145 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSY-------KKQQKAALQLYK----NFPKRAY 145 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----hCCcccc
Confidence 68999999999999999 89999999999763211 223344555555 5677753
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.08 E-value=62 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHcCCCcHH
Q 031849 45 EYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~ 66 (152)
.+.++|+.++.+||+.-++.+.
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~ 41 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDRED 41 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHH
Confidence 4788999999999999999874
No 375
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=34.78 E-value=36 Score=25.34 Aligned_cols=20 Identities=40% Similarity=0.916 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhcCCCC
Q 031849 126 VILAVGIVAWVGFAKSHMPP 145 (152)
Q Consensus 126 ~il~~~iv~w~~~a~~~~p~ 145 (152)
++++++.++|+++.+...|+
T Consensus 14 ~vv~~~~~~w~~~~~~~~~~ 33 (112)
T PF14155_consen 14 VVVAGAVVAWFGYSQFGSPP 33 (112)
T ss_pred HHHHHHHHhHhhhhhccCCC
Confidence 34556689999999765554
No 376
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=34.76 E-value=46 Score=28.30 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=26.7
Q ss_pred ChHHHHHhHHHHHhcccCC------CchHHHHHhHHHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLT------PDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~------~d~~~A~~~~ekA~~~FqkAle 59 (152)
..-++||+|.+|+.+|... .+...|-..|.+|..+|+...+
T Consensus 110 ~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~ 156 (345)
T cd09034 110 LLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKE 156 (345)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999998877542 2233444566666666666654
No 377
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=34.62 E-value=1.6e+02 Score=23.47 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcC----CC---C---hHH--HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 1 MILDAISKLEEALMVS----PN---R---HDT--LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 1 mieeAIs~le~AL~id----P~---~---~dA--lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+|++|...+.+|+++. |+ + .|| |--|.-|+..+| +.++++.--++|+.||.|==+++-+.
T Consensus 24 ~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lg----ry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 24 AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLG----RYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp -HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHhhcccccccc
Confidence 4789999999999653 32 1 244 444666777776 45788888899999999988888765
No 378
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=34.34 E-value=33 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=16.7
Q ss_pred chhhhhhHHHHHHHHHHHH-HhhhcCCCCC
Q 031849 118 LKYDIFGWVILAVGIVAWV-GFAKSHMPPP 146 (152)
Q Consensus 118 ~~ydv~gw~il~~~iv~w~-~~a~~~~p~~ 146 (152)
-|==|+|.+++.+|+.+|+ .+-|..+.||
T Consensus 73 ewk~v~~~~~~~i~~s~~l~~~~r~~~~~~ 102 (142)
T PF02936_consen 73 EWKKVFGGVFIFIGFSVLLFIWQRSYVYPP 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345888888888876664 3344455444
No 379
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.66 E-value=1.7e+02 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcC-CCChHHHHHhHHHHHhcccCCCchHHHH---------------------------------HhHH
Q 031849 3 LDAISKLEEALMVS-PNRHDTLWCLGNAHTSHAFLTPDQDEAK---------------------------------EYFN 48 (152)
Q Consensus 3 eeAIs~le~AL~id-P~~~dAlynLGnAy~~~g~l~~d~~~A~---------------------------------~~~e 48 (152)
.-..+.+.++++-| |.++...--||.+-...| |...|+ .+|-
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G----D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG----DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 34567788888877 566666777888876654 333333 2788
Q ss_pred HHHHHHHHHHHcCCCcHHHH
Q 031849 49 KATLYFQQAVDEEPSNELYQ 68 (152)
Q Consensus 49 kA~~~FqkAleldP~Ne~Y~ 68 (152)
+|...|.+.++.||.|..|-
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred HHHHHHhhccccCCCchhhh
Confidence 89999999999999997653
No 380
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=33.58 E-value=1.3e+02 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNELYQKSL 71 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~Y~ksL 71 (152)
.++|.-|.+....++..||+|+..|..+
T Consensus 83 ~gd~~wA~~L~d~l~~adp~n~~ar~l~ 110 (141)
T PF14863_consen 83 AGDYQWAAELLDHLVFADPDNEEARQLK 110 (141)
T ss_dssp CT-HHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4699999999999999999999877665
No 381
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=33.48 E-value=33 Score=31.05 Aligned_cols=17 Identities=18% Similarity=-0.101 Sum_probs=13.1
Q ss_pred hHHHHHhHHHHHhcccC
Q 031849 20 HDTLWCLGNAHTSHAFL 36 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l 36 (152)
.-++||||.+|..++..
T Consensus 117 a~VLfnla~l~S~~A~~ 133 (413)
T cd09245 117 AFVLLTYAYALSNLARS 133 (413)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999877653
No 382
>PF12854 PPR_1: PPR repeat
Probab=33.47 E-value=88 Score=17.99 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHH
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQ 56 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fqk 56 (152)
-.|..|=++|.+.| +.++|.+.|++
T Consensus 8 ~ty~~lI~~~Ck~G-----------~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAG-----------RVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCC-----------CHHHHHHHHHh
Confidence 56777788888755 89999999875
No 383
>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]
Probab=32.63 E-value=34 Score=27.18 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 031849 123 FGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 123 ~gw~il~~~iv~w~~~a~ 140 (152)
-||++|+|.+-++||..-
T Consensus 120 N~~l~Lavv~Ga~~G~fl 137 (155)
T KOG3386|consen 120 NGYLFLAVVLGAGVGYFL 137 (155)
T ss_pred hhHHHHHHHHHHhhhhhe
Confidence 399999999999999754
No 384
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=32.39 E-value=93 Score=24.61 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
+++++..+.+-+.+.+++.+.+-+||..+- ..|.+.....++-+++..++.++
T Consensus 89 w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG-----~~D~e~Q~k~i~L~~~~L~~~~~ 141 (170)
T TIGR02833 89 WKKALNEVWKQTALQKSEKEILLQFGKTLG-----ESDREGQQKHINLTLEHLERQLT 141 (170)
T ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----cCcHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777888889999999998875 35777777777777777666544
No 385
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.05 E-value=55 Score=30.72 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=28.0
Q ss_pred hHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 20 HDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 20 ~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
+.-+|.+|.+.+- +.+|..|.+||-+|+..-|.+
T Consensus 247 ARY~yY~GrIkai-----------qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 247 ARYLYYLGRIKAI-----------QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhHHHh-----------hcchhHHHHHHHHHHHhCcch
Confidence 3446778888775 459999999999999999986
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.70 E-value=1.4e+02 Score=22.36 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHH
Q 031849 4 DAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 4 eAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAl 58 (152)
++...|+....-.=-.--|+|...-|.. -+..++|++|.+.|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~---------le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEF---------LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHH---------HHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHH---------HHHcCCHHHHHHHHHhhC
Confidence 4455555555444333344444444432 234579999999999876
No 387
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=31.51 E-value=85 Score=16.43 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHc
Q 031849 45 EYFNKATLYFQQAVDE 60 (152)
Q Consensus 45 ~~~ekA~~~FqkAlel 60 (152)
+++++|.+.|++-.+.
T Consensus 14 ~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 14 GRVEEALELFKEMLER 29 (35)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4899999999987653
No 388
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.03 E-value=1.7e+02 Score=32.69 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHHHHcCCCcHH
Q 031849 43 AKEYFNKATLYFQQAVDEEPSNEL 66 (152)
Q Consensus 43 A~~~~ekA~~~FqkAleldP~Ne~ 66 (152)
+.++|..|..||++++..+|+++.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~ 1484 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEK 1484 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCcccc
Confidence 336999999999999999999763
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.80 E-value=35 Score=27.19 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCCc
Q 031849 50 ATLYFQQAVDEEPSN 64 (152)
Q Consensus 50 A~~~FqkAleldP~N 64 (152)
|..||++|+.+.|++
T Consensus 1 A~~~Y~~A~~l~P~~ 15 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN 15 (278)
T ss_dssp HHHHHHHHHHH-TTB
T ss_pred CHHHHHHHHHhCCCC
Confidence 789999999999987
No 390
>PHA02898 virion envelope protein; Provisional
Probab=30.41 E-value=68 Score=23.85 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.9
Q ss_pred cccCCCCchhhhhhHHHHHHHHHHHHHh
Q 031849 111 KKKKSSDLKYDIFGWVILAVGIVAWVGF 138 (152)
Q Consensus 111 k~k~~sd~~ydv~gw~il~~~iv~w~~~ 138 (152)
|.++.+|-.|-..-=+.+.+|||.=+||
T Consensus 35 K~~~~~~~~wRalSii~FIlgivl~lG~ 62 (92)
T PHA02898 35 KSEKPADSALRSISIISFILAIILILGI 62 (92)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666665554
No 391
>PHA03326 nuclear egress membrane protein; Provisional
Probab=29.65 E-value=3.2e+02 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcCCCCCCC
Q 031849 120 YDIFGWVILAVGIVAWVGFAKSHMPPPPP 148 (152)
Q Consensus 120 ydv~gw~il~~~iv~w~~~a~~~~p~~~~ 148 (152)
.-+.|-+.|+..+|..|......-++.++
T Consensus 245 ~~l~g~~~l~~llv~~v~~~~~~~~~~~~ 273 (275)
T PHA03326 245 VALVGAVVLALLLVCYVLWKAAPRAASGP 273 (275)
T ss_pred hHHHHHHHHHHHHHHHHHccccccCCCCC
Confidence 35677777777777666555544444333
No 392
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=29.64 E-value=92 Score=28.44 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHhcC--CCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCC--------C-cHHHHHHHHHHHcC
Q 031849 9 LEEALMVS--PNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEP--------S-NELYQKSLEVAAKA 77 (152)
Q Consensus 9 le~AL~id--P~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP--------~-Ne~Y~ksLe~~~Ka 77 (152)
|+.|+++- -++..-|-.||.+...+| +++-|.+||+|+=+.+- . -+.-++..+++.+.
T Consensus 334 L~~A~~~a~~~~~~~~W~~Lg~~AL~~g-----------~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELDDPEKWKQLGDEALRQG-----------NIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCSTHHHHHHHHHHHHHTT-----------BHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 45555433 335677888999988754 99999999999633221 1 12344555666666
Q ss_pred chhhHHHHhhhh
Q 031849 78 PELHMEIHKHGL 89 (152)
Q Consensus 78 pelh~e~~~~~~ 89 (152)
-.++..++..+.
T Consensus 403 ~~~n~af~~~~~ 414 (443)
T PF04053_consen 403 GDINIAFQAALL 414 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 677777776654
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.10 E-value=1.1e+02 Score=25.19 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHc
Q 031849 21 DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDE 60 (152)
Q Consensus 21 dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAlel 60 (152)
...+.||..|... ++|++|+++|+++...
T Consensus 179 ~l~~~~A~ey~~~-----------g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 179 YLSLEMAEEYFRL-----------GDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHH
Confidence 3455677777764 4999999999998543
No 394
>PF09016 Pas_Saposin: Pas factor saposin fold; InterPro: IPR015106 Members of this entry adopt a compact structure comprising five alpha helices. Charged and polar residues are exposed mostly on the surface, while most of the hydrophobic residues are buried inside the hydrophobic core of the helical bundle. The precise function of this domain is unknown, but it is has been shown to induce secretion of periplasmic proteins, especially collagenase []. ; PDB: 2B8I_A.
Probab=28.98 E-value=65 Score=23.14 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCchhhHHHHhhhhcc
Q 031849 66 LYQKSLEVAAKAPELHMEIHKHGLGQ 91 (152)
Q Consensus 66 ~Y~ksLe~~~Kapelh~e~~~~~~~q 91 (152)
.|.-...++.+.||-|.+|.+.+-.|
T Consensus 5 IYdTL~~LA~~ePeqhA~IRQ~LYeq 30 (76)
T PF09016_consen 5 IYDTLINLANQEPEQHAQIRQNLYEQ 30 (76)
T ss_dssp HHHHHHHHHHS-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHH
Confidence 57778899999999999999877444
No 395
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=28.91 E-value=10 Score=26.53 Aligned_cols=18 Identities=44% Similarity=1.075 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 031849 119 KYDIFGWVILAVGIVAWV 136 (152)
Q Consensus 119 ~ydv~gw~il~~~iv~w~ 136 (152)
-++--||--.+||.|.||
T Consensus 32 gfeakgwqtyavglvtwv 49 (70)
T PF10953_consen 32 GFEAKGWQTYAVGLVTWV 49 (70)
T ss_pred eecccCceeeeehhHHHH
Confidence 356678999999999996
No 396
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=28.82 E-value=1e+02 Score=26.75 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhhHHHHhhh
Q 031849 44 KEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 88 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh~e~~~~~ 88 (152)
...|..=++--+.||.-||.|+.|.+.-+-...=++|..+|-..-
T Consensus 5 L~sYK~QLqqVeaaL~~dP~NeEllkLe~DLkEvIsLTedLlqT~ 49 (262)
T KOG3026|consen 5 LASYKLQLQQVEAALQGDPENEELLKLEKDLKEVISLTEDLLQTQ 49 (262)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777789999999999999999888888888887776543
No 397
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=28.20 E-value=1.7e+02 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=22.9
Q ss_pred cCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 15 VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 15 idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
-+.-+++-++-|++||.+.| +-.+|.+...+|-+
T Consensus 115 n~~~~p~~L~kia~Ay~klg-----------~~r~~~ell~~ACe 148 (161)
T PF09205_consen 115 NEEINPEFLVKIANAYKKLG-----------NTREANELLKEACE 148 (161)
T ss_dssp ---S-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHH
Confidence 35567888999999999876 66667666666654
No 398
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.13 E-value=95 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=23.5
Q ss_pred HhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 25 CLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 25 nLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
.||..+... +++++|..||=+||..-|+-
T Consensus 68 ~lGE~L~~~-----------G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQ-----------GDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHT-----------T-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhC-----------CCHHHHHHHHHHHHHhCCCH
Confidence 578877754 48999999999999999965
No 399
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=27.45 E-value=1.6e+02 Score=25.12 Aligned_cols=60 Identities=18% Similarity=0.028 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCC--CChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 031849 4 DAISKLEEALMVSP--NRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 74 (152)
Q Consensus 4 eAIs~le~AL~idP--~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~ 74 (152)
+|...+..+...-| --+.++..+|.+.+..| +=-.|-.++++|++.+|+|.+.+-..+..
T Consensus 256 ~a~~lw~~~~r~~~~~~ra~~l~l~a~~a~~~g-----------~g~~A~~al~~a~~~~p~~~la~ll~~~l 317 (324)
T PF13830_consen 256 AAERLWRALARRLPGPWRAAALALLAWAAWLRG-----------DGALAGVALDRALEADPDHSLAQLLDQAL 317 (324)
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHhcC-----------CchHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34444444444333 34566777888887654 77789999999999999998776655554
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.40 E-value=68 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.9
Q ss_pred ChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHH
Q 031849 19 RHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAV 58 (152)
Q Consensus 19 ~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAl 58 (152)
+-..+|.+|-+|.++ .+|.+|+.+|...|
T Consensus 163 ~is~~YyvGFaylMl-----------rRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLML-----------RRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 445689999999985 48888888887765
No 401
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=27.10 E-value=1.6e+02 Score=25.00 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHh-----cCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHH----HHHHHHHH-cCC-CcHHHHHH
Q 031849 2 ILDAISKLEEALM-----VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKAT----LYFQQAVD-EEP-SNELYQKS 70 (152)
Q Consensus 2 ieeAIs~le~AL~-----idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~----~~FqkAle-ldP-~Ne~Y~ks 70 (152)
.+.|...|++|++ +.|.|+ ..||.++-.-=|+ -+..++.++|+ .+|+.|+. +|. +.+.|+.+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~P---irLgLaLN~SVF~----yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~ds 216 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHP---IRLGLALNFSVFY----YEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDS 216 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHH
Confidence 5688999999986 457774 4566665211121 13344555555 55666653 222 23457665
Q ss_pred HH
Q 031849 71 LE 72 (152)
Q Consensus 71 Le 72 (152)
..
T Consensus 217 tl 218 (244)
T smart00101 217 TL 218 (244)
T ss_pred HH
Confidence 43
No 402
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=26.65 E-value=1.3e+02 Score=20.56 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q 031849 2 ILDAISKLEEALM 14 (152)
Q Consensus 2 ieeAIs~le~AL~ 14 (152)
|++|+..+++.+.
T Consensus 3 fEe~l~~Le~Iv~ 15 (67)
T TIGR01280 3 FEEALSELEQIVQ 15 (67)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888874
No 403
>PRK14762 membrane protein; Provisional
Probab=26.65 E-value=58 Score=19.05 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHH
Q 031849 122 IFGWVILAVGIVAW 135 (152)
Q Consensus 122 v~gw~il~~~iv~w 135 (152)
+.+|+|+.+-+++-
T Consensus 3 i~lw~i~iifligl 16 (27)
T PRK14762 3 IILWAVLIIFLIGL 16 (27)
T ss_pred eHHHHHHHHHHHHH
Confidence 67999877655543
No 404
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=1.7e+02 Score=28.48 Aligned_cols=56 Identities=21% Similarity=0.034 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcH
Q 031849 5 AISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 5 AIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne 65 (152)
++...+.++.+.|++.+.+..+-..|. +|. .-++.++.+++..+.+++++++|+|+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQ-LGR----YLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHH-HHH----HHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 445555699999999999888833333 221 12345788999999999999999985
No 405
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=26.12 E-value=79 Score=19.97 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.2
Q ss_pred hhHHHHHHH
Q 031849 123 FGWVILAVG 131 (152)
Q Consensus 123 ~gw~il~~~ 131 (152)
-||+++++.
T Consensus 14 r~Wi~F~l~ 22 (38)
T PF09125_consen 14 RGWIAFALA 22 (38)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 389988877
No 406
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=26.01 E-value=39 Score=25.06 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 031849 121 DIFGWVILAVGIVAWVGFAK 140 (152)
Q Consensus 121 dv~gw~il~~~iv~w~~~a~ 140 (152)
|+++|=|+.+.||++|.|--
T Consensus 3 ~iG~~ElliIlvi~LllFGp 22 (92)
T PRK00575 3 SLSPWHWAILAVVVILLFGA 22 (92)
T ss_pred cccHHHHHHHHHHHHHhccc
Confidence 67888899999999987764
No 407
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.91 E-value=55 Score=27.67 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHcCCCc
Q 031849 46 YFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~N 64 (152)
+.++|+.++++|+++||+-
T Consensus 193 ~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 193 TLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cHHHHHHHHHHHHHhCCCC
Confidence 6678999999999999864
No 408
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=25.38 E-value=39 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.5
Q ss_pred HHHcCCCcHHHHHH
Q 031849 57 AVDEEPSNELYQKS 70 (152)
Q Consensus 57 AleldP~Ne~Y~ks 70 (152)
.+++||.|+.|++.
T Consensus 12 dF~ID~t~~~yk~~ 25 (30)
T PF08159_consen 12 DFAIDPTSPEYKKT 25 (30)
T ss_pred ccccCCCCHHHHhh
Confidence 35689999999875
No 409
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=25.02 E-value=68 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q 031849 121 DIFGWVILAVGIVAWVG 137 (152)
Q Consensus 121 dv~gw~il~~~iv~w~~ 137 (152)
=--||-||++.+++.++
T Consensus 19 ~a~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 19 LAPGWWLLLALLLLLLI 35 (146)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 34577777666555543
No 410
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=24.98 E-value=99 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=17.1
Q ss_pred cccCCCCchhhhhhHHHHHHHHHHHHHh
Q 031849 111 KKKKSSDLKYDIFGWVILAVGIVAWVGF 138 (152)
Q Consensus 111 k~k~~sd~~ydv~gw~il~~~iv~w~~~ 138 (152)
|.++.+|-.|-+.-=+.+.+|||.=+|+
T Consensus 35 K~~~~~~~~wRalSii~FI~giil~lG~ 62 (92)
T PF05767_consen 35 KNTKPTDYTWRALSIICFILGIILTLGI 62 (92)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666655554
No 411
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.94 E-value=1.4e+02 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 031849 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~le~AL 13 (152)
|++|+..|++.+
T Consensus 12 fEea~~~LEeIv 23 (80)
T PRK00977 12 FEEALAELEEIV 23 (80)
T ss_pred HHHHHHHHHHHH
Confidence 566666666666
No 412
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.65 E-value=58 Score=28.59 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCChHH----HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDT----LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA 77 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dA----lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Ka 77 (152)
++.|...|++.|++||.++-. +--||..-+- ..|-..=...-|+.=.+-|+..|-.+=+...=.+.-+|.-++
T Consensus 45 ~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p---~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~ 121 (287)
T COG4976 45 FDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETP---EKPPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKA 121 (287)
T ss_pred HHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhc
Confidence 578999999999999998643 1112221110 001111123467777788888887766665555555555443
Q ss_pred chhhHHHHhhhhcccc
Q 031849 78 PELHMEIHKHGLGQQT 93 (152)
Q Consensus 78 pelh~e~~~~~~~q~~ 93 (152)
- .---++++.-|+
T Consensus 122 ~---~g~F~~~lDLGC 134 (287)
T COG4976 122 D---LGPFRRMLDLGC 134 (287)
T ss_pred c---CCccceeeeccc
Confidence 2 111345555554
No 413
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.60 E-value=1.3e+02 Score=18.12 Aligned_cols=22 Identities=18% Similarity=0.310 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHcCCCcHHH
Q 031849 46 YFNKATLYFQQAVDEEPSNELY 67 (152)
Q Consensus 46 ~~ekA~~~FqkAleldP~Ne~Y 67 (152)
.+|.|-..|+|.|...|+-..+
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHH
Confidence 5789999999999999976544
No 414
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=24.38 E-value=1.5e+02 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHHHHcCCCcH
Q 031849 44 KEYFNKATLYFQQAVDEEPSNE 65 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne 65 (152)
++....|++||.+||..+|-|.
T Consensus 110 nerkr~al~~y~~al~~~ppn~ 131 (193)
T PF12925_consen 110 NERKRAALENYTAALQADPPNP 131 (193)
T ss_dssp HHHHHHHHHHHHHHHTCSS--H
T ss_pred HHHHHHHHHHHHHHHhcCCCCh
Confidence 3688999999999999999875
No 415
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.37 E-value=92 Score=25.12 Aligned_cols=30 Identities=40% Similarity=0.513 Sum_probs=17.7
Q ss_pred cccCCCCchhhhhhHHHHHH---HHHHHHHhhh
Q 031849 111 KKKKSSDLKYDIFGWVILAV---GIVAWVGFAK 140 (152)
Q Consensus 111 k~k~~sd~~ydv~gw~il~~---~iv~w~~~a~ 140 (152)
++||++=+.+-|.|=|+|.+ |+++|+-|..
T Consensus 12 ~~k~~~~l~~iIi~~~llll~~~G~~~~~~~~~ 44 (182)
T PRK08455 12 KKKKSKALLIIIIGVVVLLLLIVGVIAMLLMGS 44 (182)
T ss_pred cCCCCceeEEehHHHHHHHHHHHHHHHHHHhcC
Confidence 44555567777777655433 4666765544
No 416
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=24.35 E-value=62 Score=21.59 Aligned_cols=14 Identities=36% Similarity=1.123 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHH
Q 031849 121 DIFGWVILAVGIVA 134 (152)
Q Consensus 121 dv~gw~il~~~iv~ 134 (152)
-+.||+++++||+.
T Consensus 5 ~v~G~~lv~~Gii~ 18 (53)
T PF09656_consen 5 GVLGWVLVVAGIIM 18 (53)
T ss_pred hhHHHHHHHHHHHh
Confidence 36789999888765
No 417
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=24.31 E-value=1.4e+02 Score=18.10 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHH
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQ 55 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~Fq 55 (152)
++.|..|....-.++ ..|...|-.. ..+.+.|+..|=
T Consensus 1 ~e~i~~F~~iTg~~~--~~A~~~L~~~--------------~wdle~Av~~y~ 37 (43)
T PF14555_consen 1 DEKIAQFMSITGADE--DVAIQYLEAN--------------NWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHHH-SSH--HHHHHHHHHT--------------TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHCcCH--HHHHHHHHHc--------------CCCHHHHHHHHH
Confidence 467777887776644 5555555443 237778887763
No 418
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.25 E-value=5.8e+02 Score=24.89 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=38.8
Q ss_pred HHHHHH-----HHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc
Q 031849 2 ILDAIS-----KLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN 64 (152)
Q Consensus 2 ieeAIs-----~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N 64 (152)
||++|. .||+-++-||-+-|+||..=..-.+. ++-+.-.+.|+||+.--|..
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~-----------g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV-----------GDKDRIRETYERAIANVPPA 355 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCch
Confidence 455554 58999999999999999875554443 46777777888888777754
No 419
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.22 E-value=3.2e+02 Score=26.60 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHHHHHHHHHh-----cCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC-------CCcHHHHHHH
Q 031849 4 DAISKLEEALM-----VSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE-------PSNELYQKSL 71 (152)
Q Consensus 4 eAIs~le~AL~-----idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld-------P~Ne~Y~ksL 71 (152)
.++..|++|+. .+-.|---|-+||.-|++++ +|.+|+.+.-+|-+.= -|-|.|++.+
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~-----------~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfl 365 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHK-----------RYREALRSWAEAADVIRKYNYSREDEEIYKEFL 365 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHH-----------HHHHHHHHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 35667777774 24345556888988888753 6777777776664421 1237898888
Q ss_pred HHHHcCchhhHHHHhhh
Q 031849 72 EVAAKAPELHMEIHKHG 88 (152)
Q Consensus 72 e~~~Kapelh~e~~~~~ 88 (152)
|++. ||=+.+.|.-
T Consensus 366 eIAn---eLiP~~lk~~ 379 (618)
T PF05053_consen 366 EIAN---ELIPNVLKSE 379 (618)
T ss_dssp HHHH---THHHHHHHHH
T ss_pred HHHH---HHHHHHHHhh
Confidence 7764 5667776654
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.04 E-value=1.4e+02 Score=24.75 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHh-----cCCCChHHHHHhHHHH
Q 031849 2 ILDAISKLEEALM-----VSPNRHDTLWCLGNAH 30 (152)
Q Consensus 2 ieeAIs~le~AL~-----idP~~~dAlynLGnAy 30 (152)
.++|...|++|++ +.|.++ ..||.++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p---~rLgl~L 172 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHP---LRLGLAL 172 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSH---HHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCc---HHHHHHH
Confidence 4678888888885 567774 3455555
No 421
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=23.99 E-value=49 Score=24.13 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCC
Q 031849 121 DIFGWVILAVGIVAWVGFAKSHM 143 (152)
Q Consensus 121 dv~gw~il~~~iv~w~~~a~~~~ 143 (152)
+++.|=|+.++||++|.|--...
T Consensus 2 ~ig~~ElliI~vI~lllFGp~KL 24 (84)
T PRK00191 2 SLGPWEIGIIVLLIIVLFGAKKL 24 (84)
T ss_pred CCcHHHHHHHHHHHHHHhcchHH
Confidence 56778888889999987764333
No 422
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.76 E-value=2.6e+02 Score=22.29 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCCh----HHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHH
Q 031849 5 AISKLEEALMVSPNRH----DTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 5 AIs~le~AL~idP~~~----dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAle 59 (152)
|...|++==+++.+.- .|.|+.+.|+...| ..++|+..|+.|.+
T Consensus 81 aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~G-----------r~~eA~~~fr~agE 128 (144)
T PF12968_consen 81 ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLG-----------RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHH
Confidence 4444444445555543 35567778877654 88899999988865
No 423
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.68 E-value=52 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=20.3
Q ss_pred ccccCCCCchhhhhhHHHHHHHHHHH
Q 031849 110 SKKKKSSDLKYDIFGWVILAVGIVAW 135 (152)
Q Consensus 110 ~k~k~~sd~~ydv~gw~il~~~iv~w 135 (152)
-|+|+.-|..+|..||+++.+|++..
T Consensus 469 ~~~~~~~~a~~~~~~w~l~~~g~~~~ 494 (646)
T PRK05771 469 VRKGDYKDAFLAQLGWLLILLGILLI 494 (646)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566678899999999988886554
No 424
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.62 E-value=86 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=18.8
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCCC
Q 031849 122 IFGWVILAVG-IVAWVGFAKSHMPP 145 (152)
Q Consensus 122 v~gw~il~~~-iv~w~~~a~~~~p~ 145 (152)
++|=++|++. |+|.|=|.|+...|
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~ 40 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNV 40 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCC
Confidence 5777778777 88999999977544
No 425
>PHA02898 virion envelope protein; Provisional
Probab=23.28 E-value=62 Score=24.08 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=18.0
Q ss_pred hhhHHHHHHH-HHHHHHhhhcCCC
Q 031849 122 IFGWVILAVG-IVAWVGFAKSHMP 144 (152)
Q Consensus 122 v~gw~il~~~-iv~w~~~a~~~~p 144 (152)
++|=++|++. |.|.|=|.|+..|
T Consensus 16 i~GIiLL~~ACIfAfidfSK~~~~ 39 (92)
T PHA02898 16 AFGIILLIVACICAYIELSKSEKP 39 (92)
T ss_pred HHHHHHHHHHHHHheehhhcCCCc
Confidence 4666677766 8999999998775
No 426
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=23.08 E-value=47 Score=29.51 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=21.3
Q ss_pred hHHHHHhHHHHHhc----ccCCC----chHHHHHhHHHHHHHHHHHHH
Q 031849 20 HDTLWCLGNAHTSH----AFLTP----DQDEAKEYFNKATLYFQQAVD 59 (152)
Q Consensus 20 ~dAlynLGnAy~~~----g~l~~----d~~~A~~~~ekA~~~FqkAle 59 (152)
...+||+|..|+++ +.-.+ +..+|-..|.+|.-||+-..+
T Consensus 109 ~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~~l~e 156 (353)
T cd09243 109 ASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQFVKE 156 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999643 21110 011222356666666655544
No 427
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.53 E-value=1.7e+02 Score=20.56 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH
Q 031849 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~le~AL 13 (152)
|++|+..|++.+
T Consensus 8 fEe~l~~LE~IV 19 (75)
T PRK14064 8 FEEAIAELETIV 19 (75)
T ss_pred HHHHHHHHHHHH
Confidence 677777777776
No 428
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.21 E-value=2e+02 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHh
Q 031849 2 ILDAISKLEEALM 14 (152)
Q Consensus 2 ieeAIs~le~AL~ 14 (152)
|++|+..+++.++
T Consensus 1 fEe~~~~Le~Iv~ 13 (53)
T PF02609_consen 1 FEEAMERLEEIVE 13 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5777777777773
No 429
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=22.04 E-value=1.3e+02 Score=23.80 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCchhhH
Q 031849 45 EYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM 82 (152)
Q Consensus 45 ~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kapelh~ 82 (152)
++|+.+.+.|+. +..++..-.++..++..++.|+|..
T Consensus 193 eD~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~p~l~~ 229 (233)
T cd02518 193 EDFELIKEIYEA-LYPKNPDFSLEDIIELLDKNPELFE 229 (233)
T ss_pred HHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHhChhHHH
Confidence 588888888886 3322223679999999999999874
No 430
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.80 E-value=71 Score=29.76 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=22.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHcCc
Q 031849 40 QDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAP 78 (152)
Q Consensus 40 ~~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe~~~Kap 78 (152)
..+....|.+|..+| + +-.|.+||+++..|.
T Consensus 516 ~~~V~~~f~~Ae~lF-~-------~~~Y~~al~~~~~al 546 (569)
T PRK04778 516 NEEVAEALNEAERLF-R-------EYDYKAALEIIATAL 546 (569)
T ss_pred CHHHHHHHHHHHHHH-H-------hCChHHHHHHHHHHH
Confidence 355566777777777 5 667999998887753
No 431
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=21.52 E-value=1.6e+02 Score=18.97 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCChHHHHHhHHHHH
Q 031849 6 ISKLEEALMVSPNRHDTLWCLGNAHT 31 (152)
Q Consensus 6 Is~le~AL~idP~~~dAlynLGnAy~ 31 (152)
+.+.++.+-+|+++++..+.|-.|+.
T Consensus 33 l~ki~~l~g~dl~~~~~~~~l~lAl~ 58 (59)
T PF13556_consen 33 LKKIEELLGLDLDDPEDRLELYLALR 58 (59)
T ss_dssp HHHHHHHHS--TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCCHHHHHHHHHHHh
Confidence 56788899999999999988887763
No 432
>PLN03184 chloroplast Hsp70; Provisional
Probab=21.38 E-value=2.7e+02 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=21.6
Q ss_pred HHHHHhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 031849 41 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 72 (152)
Q Consensus 41 ~~A~~~~ekA~~~FqkAleldP~Ne~Y~ksLe 72 (152)
.+-++.++++++-+++.|+-+ +.+.+++.++
T Consensus 591 ~eer~~l~~~l~~~e~wL~~~-d~~~ik~~~~ 621 (673)
T PLN03184 591 ADVKEKVEAKLKELKDAIASG-STQKMKDAMA 621 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 344578899999999999876 3345544443
No 433
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=21.37 E-value=1.7e+02 Score=26.29 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCChHH------HHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcCCCc--HHHHHHH
Q 031849 3 LDAISKLEEALMVSPNRHDT------LWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSN--ELYQKSL 71 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dA------lynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleldP~N--e~Y~ksL 71 (152)
+-|.+.++.||.......|. -+.-|.+|.- .++|+-|.-||.+|+.+=-++ ++.+.-|
T Consensus 56 ~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~-----------ik~Ye~a~~~F~~A~~~~~~d~L~~We~rL 121 (368)
T COG5091 56 ENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFN-----------IKDYELAQSYFKKAKNLYVDDTLPLWEDRL 121 (368)
T ss_pred hhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhh-----------HHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 45788889999877766553 2333555542 479999999999999875444 3444444
No 434
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=21.19 E-value=67 Score=27.40 Aligned_cols=16 Identities=25% Similarity=0.808 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHHHH
Q 031849 121 DIFGWVILAVGIVAWV 136 (152)
Q Consensus 121 dv~gw~il~~~iv~w~ 136 (152)
-+.||+++++.++.-+
T Consensus 179 Q~lGW~LI~~~~i~a~ 194 (251)
T PF14798_consen 179 QVLGWILIALVIILAF 194 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999998866543
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.14 E-value=1.7e+02 Score=24.62 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHHHHHHcCCCcHHHHHHH-HHHHcCchhhHHHHhhh
Q 031849 44 KEYFNKATLYFQQAVDEEPSNELYQKSL-EVAAKAPELHMEIHKHG 88 (152)
Q Consensus 44 ~~~~ekA~~~FqkAleldP~Ne~Y~ksL-e~~~Kapelh~e~~~~~ 88 (152)
+++|++|.+.++|-.. ||++...|.-| .+..+---.|+-|++.-
T Consensus 124 ~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnFS 168 (200)
T cd00280 124 NGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNFS 168 (200)
T ss_pred cCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhcc
Confidence 4699999999999999 99887666554 44444445777777643
No 436
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=21.08 E-value=1.1e+02 Score=19.77 Aligned_cols=10 Identities=30% Similarity=1.059 Sum_probs=8.3
Q ss_pred HHHHHHHHHH
Q 031849 127 ILAVGIVAWV 136 (152)
Q Consensus 127 il~~~iv~w~ 136 (152)
++-+|||.|+
T Consensus 21 ~~Figiv~wa 30 (48)
T cd01324 21 LFFLGVVVWA 30 (48)
T ss_pred HHHHHHHHHH
Confidence 5678899998
No 437
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.94 E-value=1.7e+02 Score=21.66 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 031849 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~le~AL 13 (152)
|++|+..|++.+
T Consensus 10 FEeal~~LEeIV 21 (95)
T PRK14069 10 FEDALRELEQIA 21 (95)
T ss_pred HHHHHHHHHHHH
Confidence 677777777777
No 438
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=20.71 E-value=81 Score=23.45 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=16.1
Q ss_pred chhhhhhHHHHHHHHHHHHHh
Q 031849 118 LKYDIFGWVILAVGIVAWVGF 138 (152)
Q Consensus 118 ~~ydv~gw~il~~~iv~w~~~ 138 (152)
++|=+++|+-+.+.+..|..+
T Consensus 49 mr~K~~aW~al~~s~~S~an~ 69 (103)
T PF03669_consen 49 MRNKWCAWAALFFSCQSFANM 69 (103)
T ss_pred HHhHHHHHHHHHHHHHHHHcC
Confidence 467788888888888777755
No 439
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.66 E-value=1.9e+02 Score=20.62 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 031849 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~le~AL 13 (152)
|++|+..|++.+
T Consensus 9 fEeal~~LEeIV 20 (80)
T PRK14067 9 FEQQLARLQEIV 20 (80)
T ss_pred HHHHHHHHHHHH
Confidence 567777777766
No 440
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=20.62 E-value=5.1e+02 Score=26.02 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 031849 2 ILDAISKLEEALMVSP 17 (152)
Q Consensus 2 ieeAIs~le~AL~idP 17 (152)
.|.|...||+||+.-|
T Consensus 566 lEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 566 LERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4677788888887655
No 441
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=20.58 E-value=4e+02 Score=20.42 Aligned_cols=48 Identities=27% Similarity=0.198 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHcC---CC------cHHHHHHHHHHHcCchhhHHHHhhhhcccc
Q 031849 46 YFNKATLYFQQAVDEE---PS------NELYQKSLEVAAKAPELHMEIHKHGLGQQT 93 (152)
Q Consensus 46 ~~ekA~~~FqkAleld---P~------Ne~Y~ksLe~~~Kapelh~e~~~~~~~q~~ 93 (152)
..++|+++|.-.+.-= |. .++-+..++..-+.|+|=.||-=|+.-|-.
T Consensus 18 ~~~~A~~iF~~Il~ymgd~~~~~~~~~~~l~~~i~~~~~~~~~LrDEiy~QLiKQtt 74 (144)
T smart00139 18 LQKEAVKIFKAILKFMGDLPLPKPDSHLDLVQFILQKGLAHPELRDEIYCQLIKQLT 74 (144)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 5667777776655432 22 246777888888999999999888886653
No 442
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.52 E-value=1.9e+02 Score=20.26 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 031849 2 ILDAISKLEEAL 13 (152)
Q Consensus 2 ieeAIs~le~AL 13 (152)
|++|+..|++.+
T Consensus 6 fEeal~~LE~IV 17 (75)
T PRK14066 6 FETALKKLEEVV 17 (75)
T ss_pred HHHHHHHHHHHH
Confidence 677777777776
No 443
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=20.50 E-value=83 Score=23.71 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=13.2
Q ss_pred hhh-hhhHHHHHHHHHHHH
Q 031849 119 KYD-IFGWVILAVGIVAWV 136 (152)
Q Consensus 119 ~yd-v~gw~il~~~iv~w~ 136 (152)
.+| |-||++||-.+.+-|
T Consensus 75 ~Fd~vDGWLmLArVaPaa~ 93 (100)
T PF15651_consen 75 VFDFVDGWLMLARVAPAAV 93 (100)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 344 679999998776655
No 444
>COG2707 Predicted membrane protein [Function unknown]
Probab=20.47 E-value=84 Score=25.32 Aligned_cols=16 Identities=50% Similarity=0.702 Sum_probs=13.1
Q ss_pred hhhHHHHHHH-HHHHHH
Q 031849 122 IFGWVILAVG-IVAWVG 137 (152)
Q Consensus 122 v~gw~il~~~-iv~w~~ 137 (152)
.-+|+-+++| +|+|++
T Consensus 83 ~k~~~Al~~Gi~VawLa 99 (151)
T COG2707 83 WKMIVALAVGVLVAWLA 99 (151)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 4589999999 799974
No 445
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=20.39 E-value=71 Score=20.97 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHH
Q 031849 46 YFNKATLYFQQAV 58 (152)
Q Consensus 46 ~~ekA~~~FqkAl 58 (152)
++++|.+||++-+
T Consensus 19 sid~A~~yYe~Gi 31 (46)
T PF09145_consen 19 SIDKANDYYERGI 31 (46)
T ss_dssp -SHHHHHHHHHH-
T ss_pred CHHHHHHHHHcCc
Confidence 7888999998855
No 446
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=20.38 E-value=42 Score=32.06 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHHHHHHHcCCC
Q 031849 43 AKEYFNKATLYFQQAVDEEPS 63 (152)
Q Consensus 43 A~~~~ekA~~~FqkAleldP~ 63 (152)
++++-.+|.+||+|++++-|+
T Consensus 108 ~~G~~~~A~~~fqr~VdIT~~ 128 (556)
T KOG2518|consen 108 AEGKESNARECFQRCVDITPE 128 (556)
T ss_pred HcCCHHHHHHHHHHhccCcHH
Confidence 346888999999999999985
No 447
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=20.21 E-value=1.3e+02 Score=22.69 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=17.2
Q ss_pred cccCCCCchhhhhhHHHHHHHHHHH-HHhhh
Q 031849 111 KKKKSSDLKYDIFGWVILAVGIVAW-VGFAK 140 (152)
Q Consensus 111 k~k~~sd~~ydv~gw~il~~~iv~w-~~~a~ 140 (152)
||.-++.||- ++|-.|+.+++|++ |+|--
T Consensus 61 KkDvS~~F~L-~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 61 KKDVSVPFWL-FAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred cccccchhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 5556777774 34445556666666 66644
No 448
>PRK14983 aldehyde decarbonylase; Provisional
Probab=20.15 E-value=5.5e+02 Score=21.98 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHhHHHHHhc--cc--------CCCchHHHHHhHHHHHHHHHHHHHcCCC---------
Q 031849 3 LDAISKLEEALMVSPNRHDTLWCLGNAHTSH--AF--------LTPDQDEAKEYFNKATLYFQQAVDEEPS--------- 63 (152)
Q Consensus 3 eeAIs~le~AL~idP~~~dAlynLGnAy~~~--g~--------l~~d~~~A~~~~ekA~~~FqkAleldP~--------- 63 (152)
+||-.-|...-++=|++.|-+-.|+..=.++ || ++||.+=|++.|..=-..||+|+...--
T Consensus 33 qeA~dNyi~la~llP~~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~Lh~nFq~A~~egkv~TCLlIQaL 112 (231)
T PRK14983 33 QEAHDNYISLATLLPEHAEELTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPLHGNFQKAAAEGKVVTCLLIQAL 112 (231)
T ss_pred HHHHHhHHHHHHHCcccHHHHHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHHHHHHHHHHhcCCeeehHHHHHH
Confidence 4667777777788899999999888654332 22 6889999999998888889888775432
Q ss_pred -----------------cHHHHHHHHHHHcCchhhHHHHhh
Q 031849 64 -----------------NELYQKSLEVAAKAPELHMEIHKH 87 (152)
Q Consensus 64 -----------------Ne~Y~ksLe~~~Kapelh~e~~~~ 87 (152)
++-.||.-|-.-|.-=+|++++..
T Consensus 113 iIE~FAIaAYniYIpVAD~FARkITegVVkDEY~HLN~Ge~ 153 (231)
T PRK14983 113 IIEAFAIAAYNIYIPVADPFARKITEGVVKDEYLHLNFGEE 153 (231)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHhHHhhHHHhcchHHH
Confidence 233566666666777777776653
No 449
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.01 E-value=2.4e+02 Score=27.41 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHhHHHHHhcccCCCchHHHHHhHHHHHHHHHHHHHcC
Q 031849 2 ILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEE 61 (152)
Q Consensus 2 ieeAIs~le~AL~idP~~~dAlynLGnAy~~~g~l~~d~~~A~~~~ekA~~~FqkAleld 61 (152)
+|.--..|++-|+..|++..+|-.-|..=+++| +.|.|-..|+-||.+.
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg-----------dtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLG-----------DTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhcCc
Confidence 445567899999999999999988888777765 5555555555555543
Done!