Query 031850
Match_columns 152
No_of_seqs 155 out of 1573
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 99.9 2E-22 4.3E-27 143.6 9.4 118 1-129 121-238 (321)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.6E-18 3.5E-23 131.9 14.4 76 55-130 269-350 (352)
3 TIGR01659 sex-lethal sex-letha 99.8 1.2E-18 2.5E-23 132.2 11.2 103 1-130 166-276 (346)
4 TIGR01645 half-pint poly-U bin 99.8 1.4E-18 3E-23 138.8 12.1 116 1-132 166-287 (612)
5 PLN03134 glycine-rich RNA-bind 99.8 1.2E-17 2.6E-22 112.3 13.0 78 53-130 32-115 (144)
6 TIGR01648 hnRNP-R-Q heterogene 99.7 2.9E-17 6.3E-22 130.9 12.7 101 7-131 207-309 (578)
7 KOG0117 Heterogeneous nuclear 99.7 9.5E-18 2.1E-22 126.8 9.2 109 3-135 228-337 (506)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 4.5E-17 9.7E-22 128.9 13.0 129 1-129 330-480 (481)
9 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3E-16 6.6E-21 124.8 14.8 127 3-129 241-375 (509)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 4.1E-16 9E-21 123.4 14.3 77 53-129 273-351 (481)
11 TIGR01622 SF-CC1 splicing fact 99.7 4.1E-16 8.9E-21 122.6 13.6 112 3-129 149-266 (457)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.4E-16 7.4E-21 119.2 11.8 103 1-130 62-172 (352)
13 TIGR01659 sex-lethal sex-letha 99.7 1E-15 2.3E-20 116.1 12.2 80 51-130 103-188 (346)
14 PF00076 RRM_1: RNA recognitio 99.7 3.7E-16 8E-21 92.2 7.4 65 58-122 1-70 (70)
15 TIGR01628 PABP-1234 polyadenyl 99.7 1.7E-16 3.7E-21 127.7 7.9 121 1-130 236-365 (562)
16 KOG0145 RNA-binding protein EL 99.7 2.5E-16 5.5E-21 112.3 6.5 103 1-130 100-210 (360)
17 PLN03120 nucleic acid binding 99.6 3.7E-15 8E-20 107.5 10.4 73 55-128 4-79 (260)
18 KOG0125 Ataxin 2-binding prote 99.6 2.3E-15 4.9E-20 110.2 8.8 76 54-129 95-174 (376)
19 TIGR01628 PABP-1234 polyadenyl 99.6 2.7E-15 5.8E-20 120.8 10.2 105 1-130 59-168 (562)
20 KOG0121 Nuclear cap-binding pr 99.6 1.3E-15 2.8E-20 97.8 6.5 75 53-127 34-114 (153)
21 KOG0122 Translation initiation 99.6 1E-14 2.3E-19 103.0 10.2 77 53-129 187-269 (270)
22 KOG0131 Splicing factor 3b, su 99.6 1.6E-15 3.4E-20 102.9 5.6 108 2-135 69-183 (203)
23 KOG0144 RNA-binding protein CU 99.6 1.3E-15 2.8E-20 115.0 5.7 84 53-136 122-213 (510)
24 PF14259 RRM_6: RNA recognitio 99.6 1.1E-14 2.5E-19 86.1 8.1 65 58-122 1-70 (70)
25 KOG0127 Nucleolar protein fibr 99.6 1E-14 2.2E-19 113.0 9.5 126 2-130 65-197 (678)
26 KOG0107 Alternative splicing f 99.6 8.7E-15 1.9E-19 98.7 7.9 78 53-130 8-86 (195)
27 PLN03213 repressor of silencin 99.6 1.3E-14 2.8E-19 111.5 9.6 77 53-129 8-88 (759)
28 KOG0114 Predicted RNA-binding 99.6 2.8E-14 6.1E-19 88.5 9.3 77 53-129 16-95 (124)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4.6E-14 9.9E-19 112.4 12.2 128 1-128 354-501 (509)
30 KOG0109 RNA-binding protein LA 99.6 7.9E-15 1.7E-19 106.0 6.8 98 1-129 53-150 (346)
31 smart00362 RRM_2 RNA recogniti 99.6 7.1E-14 1.5E-18 81.9 9.3 68 57-124 1-72 (72)
32 KOG4207 Predicted splicing fac 99.5 1.4E-14 3E-19 100.2 6.5 80 49-128 7-92 (256)
33 PLN03121 nucleic acid binding 99.5 7.2E-14 1.6E-18 99.5 10.0 74 53-127 3-79 (243)
34 PF13893 RRM_5: RNA recognitio 99.5 1E-13 2.2E-18 78.5 8.8 55 72-126 1-56 (56)
35 TIGR01648 hnRNP-R-Q heterogene 99.5 4E-14 8.7E-19 113.1 9.4 75 53-127 56-136 (578)
36 KOG0130 RNA-binding protein RB 99.5 6.8E-14 1.5E-18 90.8 7.4 82 49-130 66-153 (170)
37 KOG0111 Cyclophilin-type pepti 99.5 2.7E-14 5.8E-19 99.7 5.7 86 53-138 8-99 (298)
38 TIGR01645 half-pint poly-U bin 99.5 9.5E-14 2.1E-18 111.3 9.6 74 54-127 106-185 (612)
39 KOG0123 Polyadenylate-binding 99.5 7.9E-14 1.7E-18 106.6 8.7 100 1-133 54-157 (369)
40 KOG0127 Nucleolar protein fibr 99.5 4.6E-13 9.9E-18 104.0 11.1 77 54-130 291-379 (678)
41 KOG0148 Apoptosis-promoting RN 99.5 2.1E-13 4.5E-18 97.8 8.0 76 55-130 62-143 (321)
42 KOG0145 RNA-binding protein EL 99.5 7.6E-13 1.7E-17 94.6 10.6 81 52-132 38-124 (360)
43 KOG0149 Predicted RNA-binding 99.5 1.1E-13 2.4E-18 97.4 6.3 74 54-128 11-90 (247)
44 KOG0110 RNA-binding protein (R 99.5 9.8E-14 2.1E-18 110.2 6.4 111 2-130 578-694 (725)
45 cd00590 RRM RRM (RNA recogniti 99.5 1.4E-12 2.9E-17 76.8 9.4 69 57-125 1-74 (74)
46 KOG0105 Alternative splicing f 99.4 5.4E-13 1.2E-17 91.0 7.9 78 53-130 4-84 (241)
47 KOG0117 Heterogeneous nuclear 99.4 9.5E-13 2.1E-17 100.0 9.9 81 47-127 75-162 (506)
48 TIGR01622 SF-CC1 splicing fact 99.4 1.5E-12 3.3E-17 102.5 11.5 76 53-129 87-168 (457)
49 KOG0124 Polypyrimidine tract-b 99.4 1.7E-13 3.7E-18 102.0 5.6 117 1-133 172-294 (544)
50 KOG0113 U1 small nuclear ribon 99.4 2.6E-12 5.6E-17 93.3 10.2 78 53-130 99-182 (335)
51 KOG0131 Splicing factor 3b, su 99.4 4.9E-13 1.1E-17 90.8 5.8 75 53-127 7-87 (203)
52 KOG0146 RNA-binding protein ET 99.4 3.4E-13 7.3E-18 96.8 5.1 83 54-136 18-108 (371)
53 smart00360 RRM RNA recognition 99.4 3E-12 6.4E-17 74.6 7.8 65 60-124 1-71 (71)
54 KOG0147 Transcriptional coacti 99.4 6.7E-13 1.5E-17 103.0 5.9 114 3-129 239-358 (549)
55 KOG0126 Predicted RNA-binding 99.4 7.4E-14 1.6E-18 94.8 0.5 75 53-127 33-113 (219)
56 COG0724 RNA-binding proteins ( 99.4 4.8E-12 1E-16 92.0 9.6 74 55-128 115-194 (306)
57 KOG0108 mRNA cleavage and poly 99.3 5.1E-12 1.1E-16 97.9 7.9 75 56-130 19-99 (435)
58 KOG0109 RNA-binding protein LA 99.3 6E-12 1.3E-16 91.2 6.5 72 56-129 3-74 (346)
59 KOG4206 Spliceosomal protein s 99.3 1.4E-11 3.1E-16 86.4 8.0 78 54-131 8-92 (221)
60 KOG0144 RNA-binding protein CU 99.3 2.2E-11 4.8E-16 92.4 8.6 80 53-132 32-120 (510)
61 KOG1190 Polypyrimidine tract-b 99.2 5.8E-11 1.2E-15 89.7 9.4 128 1-128 352-490 (492)
62 KOG0153 Predicted RNA-binding 99.2 5.4E-11 1.2E-15 88.1 8.5 80 49-128 222-302 (377)
63 KOG0132 RNA polymerase II C-te 99.2 5.6E-11 1.2E-15 95.7 8.1 79 55-133 421-499 (894)
64 KOG0146 RNA-binding protein ET 99.2 2.6E-11 5.6E-16 87.2 5.5 82 49-130 279-366 (371)
65 KOG4206 Spliceosomal protein s 99.2 2.6E-10 5.5E-15 80.1 9.9 124 2-127 70-220 (221)
66 KOG0124 Polypyrimidine tract-b 99.2 2.5E-11 5.5E-16 90.6 4.5 71 55-125 113-189 (544)
67 smart00361 RRM_1 RNA recogniti 99.2 2.2E-10 4.8E-15 67.7 7.2 56 69-124 2-70 (70)
68 KOG4212 RNA-binding protein hn 99.2 3.8E-10 8.3E-15 86.1 10.1 76 53-128 42-123 (608)
69 KOG4212 RNA-binding protein hn 99.1 2.2E-10 4.8E-15 87.3 8.1 74 53-126 534-608 (608)
70 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.2E-09 2.6E-14 85.9 9.5 78 53-130 403-486 (940)
71 KOG0415 Predicted peptidyl pro 99.1 5.3E-10 1.2E-14 83.3 7.2 79 51-129 235-319 (479)
72 KOG0110 RNA-binding protein (R 99.0 1E-09 2.2E-14 87.8 7.8 71 57-127 517-596 (725)
73 KOG1457 RNA binding protein (c 99.0 9.7E-09 2.1E-13 72.3 11.1 79 52-130 31-119 (284)
74 KOG1456 Heterogeneous nuclear 99.0 3.5E-09 7.7E-14 79.4 9.4 81 59-139 126-209 (494)
75 KOG4205 RNA-binding protein mu 99.0 1.9E-09 4.1E-14 80.5 7.7 105 7-133 70-180 (311)
76 KOG0123 Polyadenylate-binding 98.9 1.5E-09 3.4E-14 83.2 6.1 109 1-128 132-245 (369)
77 KOG4208 Nucleolar RNA-binding 98.9 1.6E-08 3.5E-13 70.3 7.7 78 52-129 46-130 (214)
78 KOG0106 Alternative splicing f 98.9 3.1E-09 6.8E-14 75.1 4.3 72 56-129 2-73 (216)
79 KOG4660 Protein Mei2, essentia 98.8 4.4E-09 9.5E-14 82.3 5.4 71 52-122 72-143 (549)
80 KOG1548 Transcription elongati 98.8 7.6E-08 1.6E-12 71.6 10.9 130 1-131 200-354 (382)
81 KOG0533 RRM motif-containing p 98.8 2.7E-08 5.9E-13 71.8 8.3 78 53-130 81-163 (243)
82 KOG0151 Predicted splicing reg 98.8 4.8E-08 1.1E-12 78.5 9.3 78 50-127 169-255 (877)
83 KOG0116 RasGAP SH3 binding pro 98.7 6.7E-08 1.4E-12 74.9 9.0 74 55-129 288-367 (419)
84 KOG1548 Transcription elongati 98.7 8.5E-08 1.8E-12 71.4 8.6 78 52-129 131-221 (382)
85 KOG0106 Alternative splicing f 98.7 2.9E-08 6.2E-13 70.3 5.9 118 1-127 52-169 (216)
86 KOG4205 RNA-binding protein mu 98.7 1.8E-08 4E-13 75.3 5.2 79 54-133 5-89 (311)
87 KOG1190 Polypyrimidine tract-b 98.7 1.4E-07 3.1E-12 71.7 9.0 76 55-130 297-374 (492)
88 KOG0120 Splicing factor U2AF, 98.7 8.4E-08 1.8E-12 75.4 7.8 124 1-129 348-492 (500)
89 KOG4454 RNA binding protein (R 98.7 1E-08 2.2E-13 71.9 2.2 76 52-127 6-85 (267)
90 PF04059 RRM_2: RNA recognitio 98.7 2.2E-07 4.7E-12 58.1 7.9 75 56-130 2-88 (97)
91 KOG0147 Transcriptional coacti 98.7 1.8E-07 3.8E-12 73.3 8.8 74 54-127 442-526 (549)
92 KOG0105 Alternative splicing f 98.6 1.2E-06 2.7E-11 60.2 11.1 113 3-117 64-176 (241)
93 KOG1456 Heterogeneous nuclear 98.6 1.7E-06 3.7E-11 65.3 11.8 77 52-128 284-362 (494)
94 KOG4209 Splicing factor RNPS1, 98.6 2.3E-07 5.1E-12 66.9 6.8 76 53-129 99-180 (231)
95 PF11608 Limkain-b1: Limkain b 98.6 6.6E-07 1.4E-11 53.8 7.4 68 56-127 3-75 (90)
96 KOG0120 Splicing factor U2AF, 98.5 3.6E-07 7.9E-12 71.9 6.6 124 3-130 241-370 (500)
97 PF08777 RRM_3: RNA binding mo 98.5 6.2E-07 1.3E-11 57.1 6.0 69 56-124 2-75 (105)
98 KOG1457 RNA binding protein (c 98.4 2.8E-07 6.1E-12 65.1 3.8 63 55-117 210-274 (284)
99 KOG0226 RNA-binding proteins [ 98.4 8.1E-07 1.8E-11 63.8 5.8 75 53-127 188-268 (290)
100 KOG4211 Splicing factor hnRNP- 98.3 2.8E-06 6E-11 66.1 8.1 74 52-127 7-84 (510)
101 COG5175 MOT2 Transcriptional r 98.1 1.2E-05 2.6E-10 60.2 6.4 74 56-129 115-203 (480)
102 KOG4211 Splicing factor hnRNP- 98.0 5.4E-05 1.2E-09 59.1 8.6 74 53-127 101-180 (510)
103 KOG1995 Conserved Zn-finger pr 97.9 3.4E-05 7.3E-10 58.0 5.6 79 52-130 63-155 (351)
104 PF05172 Nup35_RRM: Nup53/35/4 97.8 8.6E-05 1.9E-09 46.7 6.3 72 55-128 6-91 (100)
105 KOG4210 Nuclear localization s 97.8 2.8E-05 6.1E-10 57.9 4.7 81 53-134 182-269 (285)
106 KOG4849 mRNA cleavage factor I 97.8 4.7E-05 1E-09 57.3 5.5 75 53-127 78-161 (498)
107 PF14605 Nup35_RRM_2: Nup53/35 97.8 7.9E-05 1.7E-09 41.4 5.0 52 56-108 2-53 (53)
108 PF08952 DUF1866: Domain of un 97.7 0.00035 7.5E-09 46.7 7.8 74 53-129 25-107 (146)
109 KOG3152 TBP-binding protein, a 97.7 2.3E-05 4.9E-10 56.5 2.0 67 54-120 73-157 (278)
110 KOG1996 mRNA splicing factor [ 97.7 0.00016 3.5E-09 53.3 6.2 58 70-127 301-365 (378)
111 KOG1855 Predicted RNA-binding 97.6 0.00011 2.4E-09 56.6 5.2 66 50-115 226-310 (484)
112 KOG4307 RNA binding protein RB 97.5 0.0009 2E-08 54.7 9.2 69 57-125 869-943 (944)
113 KOG2202 U2 snRNP splicing fact 97.5 5.9E-05 1.3E-09 54.4 1.8 57 71-127 84-146 (260)
114 KOG2416 Acinus (induces apopto 97.4 0.00017 3.8E-09 57.6 4.0 76 52-128 441-521 (718)
115 KOG0112 Large RNA-binding prot 97.4 0.00042 9E-09 57.9 6.1 80 51-130 451-532 (975)
116 KOG2314 Translation initiation 97.3 0.0015 3.3E-08 52.2 8.2 75 53-127 56-142 (698)
117 PF04847 Calcipressin: Calcipr 97.1 0.0031 6.8E-08 44.1 7.0 62 68-129 8-71 (184)
118 KOG1365 RNA-binding protein Fu 97.0 0.0018 3.8E-08 49.6 5.7 76 52-127 277-360 (508)
119 KOG0129 Predicted RNA-binding 97.0 0.0025 5.3E-08 50.4 6.4 56 55-111 259-326 (520)
120 KOG2193 IGF-II mRNA-binding pr 97.0 0.00073 1.6E-08 52.3 3.4 75 56-130 2-77 (584)
121 PF15023 DUF4523: Protein of u 97.0 0.0069 1.5E-07 40.3 7.2 75 50-126 81-159 (166)
122 KOG4676 Splicing factor, argin 96.9 0.0012 2.6E-08 50.6 4.0 71 56-127 8-88 (479)
123 PF10309 DUF2414: Protein of u 96.8 0.011 2.4E-07 33.7 6.3 55 55-111 5-62 (62)
124 KOG0129 Predicted RNA-binding 96.7 0.0071 1.5E-07 47.9 6.9 58 52-109 367-431 (520)
125 KOG0115 RNA-binding protein p5 96.6 0.0044 9.5E-08 45.0 4.8 57 56-112 32-93 (275)
126 KOG1365 RNA-binding protein Fu 96.6 0.025 5.4E-07 43.5 9.0 68 55-123 161-237 (508)
127 PF07576 BRAP2: BRCA1-associat 96.5 0.045 9.8E-07 35.0 8.4 62 56-117 14-80 (110)
128 KOG2135 Proteins containing th 96.5 0.005 1.1E-07 48.3 4.6 78 55-133 372-450 (526)
129 KOG2193 IGF-II mRNA-binding pr 96.2 7.5E-05 1.6E-09 57.5 -6.3 98 2-128 55-156 (584)
130 KOG4307 RNA binding protein RB 96.0 0.02 4.3E-07 47.2 5.9 75 53-127 432-512 (944)
131 KOG2068 MOT2 transcription fac 95.8 0.0034 7.4E-08 47.2 0.7 74 56-129 78-163 (327)
132 KOG0112 Large RNA-binding prot 95.8 0.0019 4.1E-08 54.1 -0.7 74 53-126 370-448 (975)
133 KOG4574 RNA-binding protein (c 95.7 0.0082 1.8E-07 50.3 2.6 77 57-133 300-378 (1007)
134 KOG2253 U1 snRNP complex, subu 95.6 0.023 5E-07 46.4 4.7 70 53-125 38-107 (668)
135 PF08675 RNA_bind: RNA binding 95.5 0.16 3.4E-06 30.8 6.9 56 54-112 8-63 (87)
136 KOG0128 RNA-binding protein SA 95.4 0.012 2.7E-07 49.2 2.6 75 55-129 736-815 (881)
137 KOG4285 Mitotic phosphoprotein 95.2 0.056 1.2E-06 40.3 5.3 71 57-129 199-270 (350)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.031 6.8E-07 38.8 3.9 75 54-128 6-97 (176)
139 KOG0128 RNA-binding protein SA 95.2 0.00096 2.1E-08 55.5 -4.3 62 56-117 668-735 (881)
140 KOG2591 c-Mpl binding protein, 95.1 0.059 1.3E-06 43.4 5.5 71 53-124 173-247 (684)
141 KOG4660 Protein Mei2, essentia 94.4 0.082 1.8E-06 42.4 4.8 42 90-131 430-475 (549)
142 COG0724 RNA-binding proteins ( 94.2 0.13 2.9E-06 36.8 5.4 85 1-89 174-259 (306)
143 KOG0804 Cytoplasmic Zn-finger 94.0 0.22 4.8E-06 39.2 6.3 63 55-117 74-141 (493)
144 PF03880 DbpA: DbpA RNA bindin 93.9 0.48 1E-05 27.9 6.4 57 67-126 13-74 (74)
145 PF11767 SET_assoc: Histone ly 93.3 0.74 1.6E-05 26.6 6.2 54 67-123 12-65 (66)
146 KOG4410 5-formyltetrahydrofola 92.2 1.2 2.6E-05 33.3 7.4 47 55-101 330-377 (396)
147 KOG2318 Uncharacterized conser 92.1 1.5 3.1E-05 35.9 8.4 75 52-126 171-305 (650)
148 KOG4019 Calcineurin-mediated s 91.9 0.24 5.1E-06 34.4 3.3 75 56-130 11-91 (193)
149 PF13893 RRM_5: RNA recognitio 91.6 0.053 1.2E-06 29.9 0.0 18 2-19 39-56 (56)
150 PLN03134 glycine-rich RNA-bind 90.5 0.62 1.3E-05 31.2 4.3 25 1-25 93-117 (144)
151 KOG0111 Cyclophilin-type pepti 89.8 0.18 3.9E-06 36.2 1.3 25 1-25 69-93 (298)
152 KOG4676 Splicing factor, argin 81.7 0.17 3.6E-06 39.2 -2.2 75 55-130 151-227 (479)
153 KOG4207 Predicted splicing fac 80.7 1.3 2.9E-05 31.6 2.1 25 1-25 72-96 (256)
154 KOG4210 Nuclear localization s 76.4 2.7 5.9E-05 31.6 2.7 75 53-127 86-166 (285)
155 KOG4483 Uncharacterized conser 74.1 13 0.00028 29.3 5.9 55 54-109 390-445 (528)
156 PF10567 Nab6_mRNP_bdg: RNA-re 70.2 16 0.00036 27.5 5.4 76 52-127 12-106 (309)
157 KOG0126 Predicted RNA-binding 69.3 3.3 7.1E-05 29.1 1.6 23 1-23 94-116 (219)
158 KOG0108 mRNA cleavage and poly 67.7 5.1 0.00011 32.0 2.6 24 1-24 77-100 (435)
159 KOG1295 Nonsense-mediated deca 59.3 16 0.00035 28.5 3.8 62 55-116 7-77 (376)
160 PF02714 DUF221: Domain of unk 54.4 22 0.00048 26.8 3.9 34 94-129 1-34 (325)
161 KOG2295 C2H2 Zn-finger protein 52.5 3.1 6.7E-05 34.0 -1.0 67 54-120 230-302 (648)
162 PLN03213 repressor of silencin 50.5 6.2 0.00013 32.0 0.4 22 1-22 67-88 (759)
163 KOG0125 Ataxin 2-binding prote 48.5 7.4 0.00016 29.8 0.5 22 2-23 154-175 (376)
164 PRK14548 50S ribosomal protein 46.7 65 0.0014 19.5 4.9 54 57-110 22-80 (84)
165 PF07292 NID: Nmi/IFP 35 domai 46.4 15 0.00032 22.6 1.5 25 53-77 50-74 (88)
166 PF03468 XS: XS domain; Inter 43.8 24 0.00052 22.8 2.3 36 67-102 29-67 (116)
167 PF15513 DUF4651: Domain of un 43.0 32 0.0007 19.6 2.4 18 70-87 9-26 (62)
168 PF03439 Spt5-NGN: Early trans 41.6 74 0.0016 19.0 4.1 35 81-115 33-68 (84)
169 KOG0156 Cytochrome P450 CYP2 s 40.8 71 0.0015 26.1 5.0 59 59-121 36-97 (489)
170 PRK10629 EnvZ/OmpR regulon mod 39.4 1.1E+02 0.0024 20.1 7.9 73 53-127 33-109 (127)
171 TIGR03636 L23_arch archaeal ri 37.2 91 0.002 18.5 5.0 53 57-109 15-72 (77)
172 PF07530 PRE_C2HC: Associated 34.7 92 0.002 17.9 3.6 55 70-127 2-63 (68)
173 KOG4008 rRNA processing protei 34.5 36 0.00079 24.9 2.2 33 53-85 38-70 (261)
174 PF00403 HMA: Heavy-metal-asso 33.8 83 0.0018 17.0 6.0 52 58-109 2-57 (62)
175 PF08544 GHMP_kinases_C: GHMP 33.0 1E+02 0.0022 17.8 5.9 41 70-111 37-79 (85)
176 PF15063 TC1: Thyroid cancer p 32.1 26 0.00057 20.8 1.0 28 55-82 25-52 (79)
177 PF11823 DUF3343: Protein of u 31.2 89 0.0019 17.9 3.2 26 92-117 2-27 (73)
178 PLN03120 nucleic acid binding 30.9 44 0.00096 24.9 2.2 21 3-23 61-81 (260)
179 PF12829 Mhr1: Transcriptional 30.9 1.3E+02 0.0029 18.5 4.4 50 63-112 20-72 (91)
180 smart00596 PRE_C2HC PRE_C2HC d 30.9 70 0.0015 18.7 2.6 55 70-127 2-63 (69)
181 COG0150 PurM Phosphoribosylami 29.1 22 0.00048 27.5 0.4 45 70-114 276-322 (345)
182 KOG2891 Surface glycoprotein [ 27.9 67 0.0015 24.3 2.7 75 55-129 149-268 (445)
183 PF11411 DNA_ligase_IV: DNA li 27.4 45 0.00097 16.8 1.2 15 66-80 20-34 (36)
184 PRK11901 hypothetical protein; 25.0 3.3E+02 0.0072 21.1 7.8 58 52-113 242-306 (327)
185 COG5638 Uncharacterized conser 25.0 1.2E+02 0.0026 24.3 3.7 38 52-89 143-185 (622)
186 COG0445 GidA Flavin-dependent 23.9 2E+02 0.0044 24.2 4.9 39 51-89 297-335 (621)
187 KOG4213 RNA-binding protein La 23.6 1.1E+02 0.0024 21.6 3.0 44 67-110 118-169 (205)
188 COG0030 KsgA Dimethyladenosine 23.1 1.3E+02 0.0028 22.4 3.5 27 55-81 95-121 (259)
189 cd01612 APG12_C Ubiquitin-like 22.7 1.9E+02 0.0041 17.5 3.8 7 56-62 47-53 (87)
190 COG1098 VacB Predicted RNA bin 20.7 2.6E+02 0.0056 18.4 4.1 45 80-124 6-59 (129)
191 COG2608 CopZ Copper chaperone 20.6 1.8E+02 0.004 16.6 5.5 45 57-101 5-49 (71)
192 PRK10905 cell division protein 20.2 3.3E+02 0.0072 21.1 5.1 58 53-113 245-308 (328)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2e-22 Score=143.58 Aligned_cols=118 Identities=31% Similarity=0.544 Sum_probs=99.9
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|..|||++|++|.||-+||..++......+. .=......+.+..++|||+|++..++++.+++.|++||
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~n~~~l-----------tfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEMNGKPL-----------TFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred HHHhCCeeeccceeeccccccCccccCCCCc-----------cHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 5789999999999999999998733211110 00011234456789999999999999999999999999
Q ss_pred CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 81 ~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.|.+|++.+++||+||.|.+.|+|..||..+|+.+|.|+.+++.|.+..
T Consensus 190 ~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 190 PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 9999999999999999999999999999999999999999999999854
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=1.6e-18 Score=131.93 Aligned_cols=76 Identities=36% Similarity=0.575 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
+.+|||+|||+.+++++|+++|++||.|..++++.+ +|||||+|.+.++|.+|+..|||..|+|+.|+|.|..+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 457999999999999999999999999999998764 79999999999999999999999999999999999986
Q ss_pred cc
Q 031850 129 PA 130 (152)
Q Consensus 129 ~~ 130 (152)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 54
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=1.2e-18 Score=132.15 Aligned_cols=103 Identities=27% Similarity=0.524 Sum_probs=89.0
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|++|||..|.|++|+|.++.+.... ....+|||+|||+.+++++|+++|++||
T Consensus 166 i~~LnG~~l~gr~i~V~~a~p~~~~---------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 166 IKNLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred HHHcCCCccCCceeeeecccccccc---------------------------cccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 4579999999999999987653211 2346899999999999999999999999
Q ss_pred CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEecCCcc
Q 031850 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPA 130 (152)
Q Consensus 81 ~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 130 (152)
.|..+.++.+ +++|||+|.+.++|++|++.||+..+.+ +.|+|.++....
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999988765 4899999999999999999999999865 689999998653
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.79 E-value=1.4e-18 Score=138.76 Aligned_cols=116 Identities=23% Similarity=0.470 Sum_probs=92.4
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|+.|||..|+||+|+|+++....... +.............+|||+||++.+++++|+++|+.||
T Consensus 166 i~~lnG~~i~GR~IkV~rp~~~p~a~----------------~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG 229 (612)
T TIGR01645 166 LEQMNGQMLGGRNIKVGRPSNMPQAQ----------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 229 (612)
T ss_pred HHhcCCeEEecceeeecccccccccc----------------cccccccccccccceEEeecCCCCCCHHHHHHHHhhcC
Confidence 45799999999999998644321110 00000011123457999999999999999999999999
Q ss_pred CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccc
Q 031850 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (152)
Q Consensus 81 ~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (152)
.|..+++.++ +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.+++..
T Consensus 230 ~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 230 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999998753 799999999999999999999999999999999999976544
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.2e-17 Score=112.26 Aligned_cols=78 Identities=27% Similarity=0.598 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|+.|++.|++..|.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45679999999999999999999999999999988753 699999999999999999999999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
.++.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 8654
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.74 E-value=2.9e-17 Score=130.87 Aligned_cols=101 Identities=21% Similarity=0.390 Sum_probs=87.2
Q ss_pred cccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccc--CCeEE
Q 031850 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIAS 84 (152)
Q Consensus 7 ~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~ 84 (152)
..|+|+.|.|+|+.+..... ........+|||+||+..+++++|+++|++| |.|..
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----------------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred eEecCceEEEEeeccccccc----------------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 57899999999988764321 1112345789999999999999999999999 99999
Q ss_pred EEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 85 VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 85 ~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
|.+. ++||||+|.+.++|.+|++.|||..|.|+.|+|+|++++..
T Consensus 265 V~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 265 VKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred EEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9877 67999999999999999999999999999999999987643
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=9.5e-18 Score=126.78 Aligned_cols=109 Identities=24% Similarity=0.451 Sum_probs=94.5
Q ss_pred cccC-cccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 3 EMNG-VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 3 ~lng-~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
.|+| +.|+|..+.|+||.++.... .......+.|||.||+..+|++.|+++|++||.
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~d----------------------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEPD----------------------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred ccCCceeecCCcceeeccCcccCCC----------------------hhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 3455 78999999999999986442 223345689999999999999999999999999
Q ss_pred eEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccccCC
Q 031850 82 IASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQAS 135 (152)
Q Consensus 82 v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 135 (152)
|.+|+.+ +.||||+|.+.++|.+|++.+||..|.|..|.|.+|+|+..+...
T Consensus 286 veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 286 VERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred eEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 9999888 559999999999999999999999999999999999988655443
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.74 E-value=4.5e-17 Score=128.85 Aligned_cols=129 Identities=20% Similarity=0.365 Sum_probs=93.0
Q ss_pred CccccCcccCCcceEEeecCCCCCCCcccc---CCCC--CCC-----CCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHH
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQ---YSSQ--GGY-----ASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDE 70 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~---~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 70 (152)
|+.|||..|.|++|+|.++........... .... ... .+...+.........+++.+|||+|||..++++
T Consensus 330 i~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 330 LTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 457999999999999999876532211110 0000 000 000001111111123567899999999999999
Q ss_pred HHHHHhcccCC--eEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE------eEEEecCCc
Q 031850 71 DLRQPFSQYGE--IASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQS------VRLSWGRNP 129 (152)
Q Consensus 71 ~l~~~f~~~g~--v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~------l~v~~a~~~ 129 (152)
+|+++|+.||. +..+++... +++|||+|.+.++|.+|+..|||..|.++. |+|+|++++
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999997 888887643 589999999999999999999999999885 999999864
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.71 E-value=3e-16 Score=124.81 Aligned_cols=127 Identities=14% Similarity=0.231 Sum_probs=90.9
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCC-CC-CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGA-PG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
.|||+.|.|++|+|.+.....+.................. .. ............+|||+|||+.+++++|+++|+.||
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 4899999999999987655432211110000000000000 00 001111123457999999999999999999999999
Q ss_pred CeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 81 EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 81 ~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.|..+.++. .+|||||+|.+.+.|..|+..|+|..|.|+.|.|.++...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999988865 3799999999999999999999999999999999998643
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.71 E-value=4.1e-16 Score=123.39 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
+++.+|||+||++ .+++++|+++|+.||.|..|+++.+ +|+|||+|.+.++|..|+..|||..|.|+.|+|++++..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4678999999998 6999999999999999999999876 699999999999999999999999999999999998754
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.70 E-value=4.1e-16 Score=122.63 Aligned_cols=112 Identities=27% Similarity=0.522 Sum_probs=89.3
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
.|+|..|.|++|.|.++............ . .....+...+|||+|||..+++++|+++|++||.|
T Consensus 149 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~-----~----------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 149 ALTGQMLLGRPIIVQSSQAEKNRAAKAAT-----H----------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI 213 (457)
T ss_pred HhCCCEECCeeeEEeecchhhhhhhhccc-----c----------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Confidence 48999999999999886544322110000 0 00111236899999999999999999999999999
Q ss_pred EEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 83 ASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 83 ~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..|.+.. .+|||||+|.+.++|.+|+..|+|..|.|+.|+|.|+...
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 9998874 3689999999999999999999999999999999998743
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=3.4e-16 Score=119.21 Aligned_cols=103 Identities=28% Similarity=0.617 Sum_probs=88.7
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|+.|||..|.|++|+|.++.+.... ....+|||+|||..+++++|+.+|++||
T Consensus 62 i~~l~g~~l~g~~i~v~~a~~~~~~---------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 62 VNSLNGLRLQNKTIKVSYARPSSDS---------------------------IKGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred HhhcccEEECCeeEEEEeecccccc---------------------------cccceEEECCccccCCHHHHHHHHhccC
Confidence 4679999999999999998654321 2356899999999999999999999999
Q ss_pred CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEecCCcc
Q 031850 81 EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPA 130 (152)
Q Consensus 81 ~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 130 (152)
.|..+.+..+ +|+|||+|.+.++|++|++.|||..+.| .+|.|.|+..+.
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999888653 6899999999999999999999999876 578999987554
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=1e-15 Score=116.11 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
.....++|||+|||+++++++|+++|+.||.|..|+++.+ +|||||+|.+.++|.+|++.|+|..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3456789999999999999999999999999999998754 5899999999999999999999999999999999
Q ss_pred ecCCcc
Q 031850 125 WGRNPA 130 (152)
Q Consensus 125 ~a~~~~ 130 (152)
|+++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 998654
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=3.7e-16 Score=92.16 Aligned_cols=65 Identities=48% Similarity=0.847 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 58 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
|||+|||..+++++|+++|++||.+..+.+..+ +++|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988763 68999999999999999999999999999885
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=1.7e-16 Score=127.74 Aligned_cols=121 Identities=28% Similarity=0.482 Sum_probs=93.6
Q ss_pred CccccCcccC----CcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHh
Q 031850 1 MTEMNGVYCS----SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF 76 (152)
Q Consensus 1 i~~lng~~l~----Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 76 (152)
++.|||..|. |+.+.|.++..+........... ..............+|||+||+..+++++|+++|
T Consensus 236 v~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~---------~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 236 VEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKF---------EELQQERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred HHHhCCcEecccccceeeEeecccChhhhHHHHHhhH---------HhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 3578999999 99999998876643311100000 0000001112446789999999999999999999
Q ss_pred cccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 77 SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 77 ~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
++||.|..+++..+ +|+|||+|.+.++|.+|+..|||..++|+.|.|.+|..+.
T Consensus 307 ~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 307 SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999998754 6999999999999999999999999999999999998653
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.5e-16 Score=112.26 Aligned_cols=103 Identities=30% Similarity=0.610 Sum_probs=90.7
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|..|||..|..+.|+|.++.+.... -.+..|||++||..++..+|+.+|++||
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~---------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fG 152 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDS---------------------------IKDANLYVSGLPKTMTQKELEQIFSPFG 152 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhh---------------------------hcccceEEecCCccchHHHHHHHHHHhh
Confidence 4679999999999999999877533 4578999999999999999999999999
Q ss_pred CeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCe--EeEEEecCCcc
Q 031850 81 EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQ--SVRLSWGRNPA 130 (152)
Q Consensus 81 ~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~--~l~v~~a~~~~ 130 (152)
.|...++.. .+|++||.|+..++|+.|+..|||..-.|. +|.|+||..+.
T Consensus 153 rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 153 RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 887666654 389999999999999999999999998766 89999998664
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=3.7e-15 Score=107.49 Aligned_cols=73 Identities=29% Similarity=0.417 Sum_probs=68.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
.++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999999999999999999999999999775 6999999999999999995 999999999999999973
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2.3e-15 Score=110.25 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..++|+|+|||+...+-||+..|.+||.|..|+|+. +|||+||+|++.++|++|-+.|||..+.||+|.|..|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 457999999999999999999999999999999875 3899999999999999999999999999999999999866
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=2.7e-15 Score=120.84 Aligned_cols=105 Identities=30% Similarity=0.463 Sum_probs=88.8
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|+.||+..|+|++|+|.|+...... ......+|||+|||.++++++|+++|+.||
T Consensus 59 l~~ln~~~i~gk~i~i~~s~~~~~~-------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G 113 (562)
T TIGR01628 59 LETMNFKRLGGKPIRIMWSQRDPSL-------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFG 113 (562)
T ss_pred HHHhCCCEECCeeEEeecccccccc-------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcC
Confidence 3578999999999999997643211 012245799999999999999999999999
Q ss_pred CeEEEEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 81 EIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 81 ~v~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
.|..|++.. .+|+|||+|.+.++|.+|++.++|..+.|+.|.|....+..
T Consensus 114 ~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 114 NILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred CcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 999998865 36899999999999999999999999999999998776543
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.3e-15 Score=97.83 Aligned_cols=75 Identities=29% Similarity=0.615 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+++|||+||++.++|+.|+++|+++|+|..|.+-.+ .|||||+|.+.++|..|+.-++|..++.++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999977543 599999999999999999999999999999999997
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 21
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1e-14 Score=102.97 Aligned_cols=77 Identities=29% Similarity=0.564 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....+|-|.||+.++++++|+++|.+||.|.++.+.++ +|||||.|.+.++|.+|+..|||.-++.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999988764 799999999999999999999999999999999999
Q ss_pred CCc
Q 031850 127 RNP 129 (152)
Q Consensus 127 ~~~ 129 (152)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.60 E-value=1.6e-15 Score=102.88 Aligned_cols=108 Identities=29% Similarity=0.497 Sum_probs=89.6
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+-||.+.|.||+|+|..+...... ...+..+||+||.+.+++..|++.|+.||.
T Consensus 69 kiln~VkLYgrpIrv~kas~~~~n--------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 69 KILNMVKLYGRPIRVNKASAHQKN--------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred HHHHHHHhcCceeEEEeccccccc--------------------------ccccccccccccCcchhHHHHHHHHHhccc
Confidence 458899999999999998833222 245689999999999999999999999997
Q ss_pred eEEE-EeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccccCC
Q 031850 82 IASV-KIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQAS 135 (152)
Q Consensus 82 v~~~-~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 135 (152)
+... ++++ .+|++||.|.+.+.+.+|+.++||..+..+++.|+|+..+..+.++
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg~~ 183 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKGER 183 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCccc
Confidence 6542 3333 2689999999999999999999999999999999999866555443
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.3e-15 Score=114.99 Aligned_cols=84 Identities=29% Similarity=0.541 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCe-eCCe--EeEEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGKQ--SVRLS 124 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~-~~g~--~l~v~ 124 (152)
....+|||+.|+..++|.+++++|++||.|+.|.+.++ ||||||.|.+.+.|..|++.|||.. +.|+ +|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 34689999999999999999999999999999999885 8999999999999999999999987 4454 89999
Q ss_pred ecCCcccccCCC
Q 031850 125 WGRNPANKQASL 136 (152)
Q Consensus 125 ~a~~~~~~~~~~ 136 (152)
||++++.+..++
T Consensus 202 FADtqkdk~~~~ 213 (510)
T KOG0144|consen 202 FADTQKDKDGKR 213 (510)
T ss_pred ecccCCCchHHH
Confidence 999887665544
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=1.1e-14 Score=86.07 Aligned_cols=65 Identities=37% Similarity=0.727 Sum_probs=59.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 58 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
|||+|||+.+++++|.++|+.+|.|..+.+..+ +++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999988765 58999999999999999999999999999875
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1e-14 Score=112.97 Aligned_cols=126 Identities=23% Similarity=0.353 Sum_probs=95.0
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCC--CCCCCCCceEEEcCCCCCCCHHHHHHHhccc
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 79 (152)
++.++..+.||.|+|..+.++............+-. .+-.+... ..-..+...|.|.|||+.+...+|+.+|+.|
T Consensus 65 ~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~ve---K~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~ 141 (678)
T KOG0127|consen 65 AETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVE---KPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF 141 (678)
T ss_pred HHhhcCcccceecccccccccccchhcccccchhhh---cccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc
Confidence 456778899999999999987644311111110000 00001000 1112236789999999999999999999999
Q ss_pred CCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 80 GEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 80 g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
|.|..+.|++. .|||||.|....+|..|++.+||..|+||+|-|.||.+..
T Consensus 142 G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 142 GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999863 5999999999999999999999999999999999998764
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=8.7e-15 Score=98.69 Aligned_cols=78 Identities=31% Similarity=0.566 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
...+.|||+||+..++..+|+.+|..||.+..|-|-+ ..|||||+|++..+|..|+..|+|..|.|..|+|++..-..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3478999999999999999999999999988775544 46999999999999999999999999999999999987543
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=1.3e-14 Score=111.53 Aligned_cols=77 Identities=23% Similarity=0.443 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC--CCCEEEEEeCCH--HHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANR--ENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~afv~f~~~--~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
....+||||||++.+++++|+..|+.||.|..+.|++ ++|||||+|.+. .++.+|+..|||..+.|+.|+|.-|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 4567999999999999999999999999999999987 489999999987 789999999999999999999999986
Q ss_pred c
Q 031850 129 P 129 (152)
Q Consensus 129 ~ 129 (152)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 28
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.8e-14 Score=88.48 Aligned_cols=77 Identities=21% Similarity=0.414 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.....|||.|||+.+|.++..++|.+||.|..+++-.. +|-|||.|++..+|.+|++.|+|..+.++.+.|-|-.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45689999999999999999999999999999999663 799999999999999999999999999999999987654
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=4.6e-14 Score=112.39 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=87.9
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCC-CCCCCCCCCCCCCCCCCceEEEcCCCCC---C-------CH
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYA-SNGAPGQGPQSEGDSSNTTIFVGGLDPN---V-------TD 69 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~---~-------~~ 69 (152)
|+.|||..|+|+.|+|.++................... ...............+...|+|.|+... + ..
T Consensus 354 ~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~ 433 (509)
T TIGR01642 354 IAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIY 433 (509)
T ss_pred HHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHH
Confidence 35799999999999999987543221111000000000 0000000011122345678999999643 1 12
Q ss_pred HHHHHHhcccCCeEEEEeeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 70 EDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 70 ~~l~~~f~~~g~v~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
++|++.|.+||.|..|.|++. .|++||+|.+.++|++|+..|||..|+|+.|.|.|...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 578999999999999998753 48999999999999999999999999999999999764
No 30
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.56 E-value=7.9e-15 Score=105.96 Aligned_cols=98 Identities=23% Similarity=0.475 Sum_probs=90.3
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|..|+|..|+|..|+|+.++.+. ....+|+|+|+.+.++..+|+..|.+||
T Consensus 53 irNLhgYtLhg~nInVeaSksKs-----------------------------k~stkl~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 53 IRNLHGYTLHGVNINVEASKSKS-----------------------------KASTKLHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred HhhcccceecceEEEEEeccccC-----------------------------CCccccccCCCCccccCHHHhhhhcccC
Confidence 45699999999999999988873 3468999999999999999999999999
Q ss_pred CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 81 ~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
+|.+|.+. ++++||.|+-.++|..|+..|++..+.|++++|+.+.++
T Consensus 104 pviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 104 PVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Cceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 99999999 789999999999999999999999999999999998654
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=7.1e-14 Score=81.90 Aligned_cols=68 Identities=50% Similarity=0.894 Sum_probs=63.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCC----CEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
+|||+|||..+++++|+++|.+||.+..+.+..+. ++|||+|.+.+.|++|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888765 999999999999999999999999999998873
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.4e-14 Score=100.23 Aligned_cols=80 Identities=30% Similarity=0.581 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
+++......|.|.||.+-++.++|+.+|++||.|-.|.|+.+ +|||||.|....+|+.|++.|+|..++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344455789999999999999999999999999999999875 79999999999999999999999999999999
Q ss_pred EEecCC
Q 031850 123 LSWGRN 128 (152)
Q Consensus 123 v~~a~~ 128 (152)
|++|+-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 999973
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=7.2e-14 Score=99.46 Aligned_cols=74 Identities=28% Similarity=0.344 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+.+.+|||+||++.+++++|+++|+.||.|..|.+.++ .++|||+|.+++.+..|+ .|+|..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 34689999999999999999999999999999999875 479999999999999999 599999999999998865
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=1e-13 Score=78.54 Aligned_cols=55 Identities=36% Similarity=0.667 Sum_probs=51.4
Q ss_pred HHHHhcccCCeEEEEeeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 72 LRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 72 l~~~f~~~g~v~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
|+++|++||.|..+.+.... ++|||+|.+.++|..|+..|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998877 99999999999999999999999999999999986
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=4e-14 Score=113.10 Aligned_cols=75 Identities=24% Similarity=0.450 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a 126 (152)
...++|||+|||+++++++|+++|++||.|..++++. ++|||||+|.+.++|++|++.||+..+. |+.|.|+.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4568999999999999999999999999999999875 3799999999999999999999999985 788777765
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=6.8e-14 Score=90.77 Aligned_cols=82 Identities=28% Similarity=0.545 Sum_probs=73.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
+..+-.+..|||.++....+++++.+.|..||.|+.+.+..+ +|||+|+|.+.++|+.|+..+||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 344456889999999999999999999999999999988654 79999999999999999999999999999999
Q ss_pred EEecCCcc
Q 031850 123 LSWGRNPA 130 (152)
Q Consensus 123 v~~a~~~~ 130 (152)
|.||.-..
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99996443
No 37
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.7e-14 Score=99.72 Aligned_cols=86 Identities=30% Similarity=0.628 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|||++|..++++..|...|-+||.|..+.++.| +||+||+|...|+|..|+..||+..|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44689999999999999999999999999999998764 899999999999999999999999999999999999
Q ss_pred CCcccccCCCCC
Q 031850 127 RNPANKQASLSP 138 (152)
Q Consensus 127 ~~~~~~~~~~~~ 138 (152)
+|..-+.....|
T Consensus 88 kP~kikegsqkP 99 (298)
T KOG0111|consen 88 KPEKIKEGSQKP 99 (298)
T ss_pred CCccccCCCCCC
Confidence 998766544433
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.51 E-value=9.5e-14 Score=111.30 Aligned_cols=74 Identities=24% Similarity=0.567 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..++|||+||++.+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|++|+..|||..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4579999999999999999999999999999998653 7999999999999999999999999999999998754
No 39
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.9e-14 Score=106.60 Aligned_cols=100 Identities=29% Similarity=0.509 Sum_probs=88.9
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|++||-..|.|++|+|.|+...+.. |||.||+..++..+|+++|+.||
T Consensus 54 ~~~~n~~~~~~~~~rim~s~rd~~~--------------------------------~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 54 LDTMNFDVLKGKPIRIMWSQRDPSL--------------------------------VFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred HHHcCCcccCCcEEEeehhccCCce--------------------------------eeecCCCcccCcHHHHHHHHhhc
Confidence 5689999999999999997665311 99999999999999999999999
Q ss_pred CeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 81 EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 81 ~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
.|..|++..+ +|+ ||+|+++++|++|+..+||..+.|+.|.|.....+..+.
T Consensus 102 ~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 102 NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 9999999764 788 999999999999999999999999999998887655443
No 40
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.6e-13 Score=104.00 Aligned_cols=77 Identities=25% Similarity=0.490 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHh-----CC-CeeCCeEe
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL-----NG-TVIGKQSV 121 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l-----~g-~~~~g~~l 121 (152)
.+.+|||.|||++++++.|...|++||.|..+.++.+ +|.|||.|.+..+|..||..- .| ..|.||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999887653 799999999999999999865 23 55889999
Q ss_pred EEEecCCcc
Q 031850 122 RLSWGRNPA 130 (152)
Q Consensus 122 ~v~~a~~~~ 130 (152)
.|..|.++.
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999998764
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.1e-13 Score=97.81 Aligned_cols=76 Identities=37% Similarity=0.834 Sum_probs=71.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
..-+||+-|...++.++|++.|.+||+|..+++++| +||+||.|.+.++|+.||..|||..|++|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 457999999999999999999999999999999875 79999999999999999999999999999999999975
Q ss_pred cc
Q 031850 129 PA 130 (152)
Q Consensus 129 ~~ 130 (152)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.6e-13 Score=94.64 Aligned_cols=81 Identities=33% Similarity=0.602 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
....+.|.|.-||..++.++++.+|...|+|+.|++++| -||+||.|.++++|++|+..|||..+..+.|+|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 344578899999999999999999999999999999986 48999999999999999999999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
|+|....
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9987644
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=97.37 Aligned_cols=74 Identities=34% Similarity=0.513 Sum_probs=65.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.-++|||++|+|.+..+.|++.|++||+|.+..++.| +||+||+|.+.++|.+||+. ..-.|+||+-.+.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 4578999999999999999999999999999988764 79999999999999999974 5678999998888775
Q ss_pred C
Q 031850 128 N 128 (152)
Q Consensus 128 ~ 128 (152)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=9.8e-14 Score=110.23 Aligned_cols=111 Identities=21% Similarity=0.439 Sum_probs=92.4
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|+|..|+|+.|.|+.+..++..... ...+.......|+|.|+|+..+-.+++.+|..||.
T Consensus 578 k~lqgtvldGH~l~lk~S~~k~~~~~g------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq 639 (725)
T KOG0110|consen 578 KALQGTVLDGHKLELKISENKPASTVG------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ 639 (725)
T ss_pred HHhcCceecCceEEEEeccCccccccc------------------cccccccccceeeeeccchHHHHHHHHHHHhcccc
Confidence 568999999999999998833222100 11122233689999999999999999999999999
Q ss_pred eEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 82 IASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 82 v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
+..|+++. ++|||||+|-+..+|.+|+.+|.++.+.||.|.+.||+...
T Consensus 640 lksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 640 LKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999976 38999999999999999999999999999999999998654
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1.4e-12 Score=76.77 Aligned_cols=69 Identities=48% Similarity=0.877 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
+|+|+|||..+++++|+++|+.+|.+..+.+..+ +++|||+|.+.+.|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988764 68999999999999999999999999999999874
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.4e-13 Score=90.98 Aligned_cols=78 Identities=22% Similarity=0.455 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
...++|||+|||.++-+.+|+++|-+||.|..|.+... -.||||+|++..+|+.|+..-+|..++|..|+|+|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45689999999999999999999999999999987543 579999999999999999999999999999999999855
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 3
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=9.5e-13 Score=100.03 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=73.6
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeC-Ce
Q 031850 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG-KQ 119 (152)
Q Consensus 47 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~-g~ 119 (152)
...+..+.++.|||+.||.++.|++|.-+|++.|+|-.++++.+ +|||||.|.+.++|+.|++.||+.+|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 44555578999999999999999999999999999999999875 899999999999999999999999985 99
Q ss_pred EeEEEecC
Q 031850 120 SVRLSWGR 127 (152)
Q Consensus 120 ~l~v~~a~ 127 (152)
.|.|+.+.
T Consensus 155 ~igvc~Sv 162 (506)
T KOG0117|consen 155 LLGVCVSV 162 (506)
T ss_pred EeEEEEee
Confidence 98888765
No 48
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=1.5e-12 Score=102.50 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....+|||+|||..+++++|+++|+.||.|..|.++.+ +|+|||+|.+.++|.+|+. |+|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 34679999999999999999999999999999998764 7999999999999999996 9999999999999987
Q ss_pred CCc
Q 031850 127 RNP 129 (152)
Q Consensus 127 ~~~ 129 (152)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 644
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.7e-13 Score=102.03 Aligned_cols=117 Identities=22% Similarity=0.434 Sum_probs=91.5
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
++.|||..|+||.|+|++...-+..- . ---..+.+-..-.+|||..+.++.+++||+..|+.||
T Consensus 172 lEqMNg~mlGGRNiKVgrPsNmpQAQ--p--------------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 172 LEQMNGQMLGGRNIKVGRPSNMPQAQ--P--------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred HHHhccccccCccccccCCCCCcccc--h--------------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 36899999999999998543321110 0 0000011112346899999999999999999999999
Q ss_pred CeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 81 EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 81 ~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
+|..|.+-+ ++||+|++|.+..+...|+..||-..++|..|+|-.+.+++.-.
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh
Confidence 999999865 38999999999999999999999999999999999988665443
No 50
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.6e-12 Score=93.28 Aligned_cols=78 Identities=22% Similarity=0.491 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+-+||||+-|++.+++..|+..|+.||.|+.|.++.+ +|||||+|..+.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999874 799999999999999999999999999999999997
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
+-+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 6543
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=4.9e-13 Score=90.84 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....+|||+||+..++++-|+++|-+.|+|..+.++++ +||||++|.++++|+=|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999999874 799999999999999999999999999999999988
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=3.4e-13 Score=96.77 Aligned_cols=83 Identities=25% Similarity=0.569 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCee-C--CeEeEEEe
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI-G--KQSVRLSW 125 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~-~--g~~l~v~~ 125 (152)
..++|||+.|...-+|++++.+|..||.+.+|.+.++ +||+||.|.+..+|+.||..|||..- - ...|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5789999999999999999999999999999999873 89999999999999999999999874 2 45899999
Q ss_pred cCCcccccCCC
Q 031850 126 GRNPANKQASL 136 (152)
Q Consensus 126 a~~~~~~~~~~ 136 (152)
+++.+++..|+
T Consensus 98 ADTdkER~lRR 108 (371)
T KOG0146|consen 98 ADTDKERTLRR 108 (371)
T ss_pred ccchHHHHHHH
Confidence 99887665543
No 53
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=3e-12 Score=74.61 Aligned_cols=65 Identities=43% Similarity=0.787 Sum_probs=59.5
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 60 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
|+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988764 5799999999999999999999999999998873
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.38 E-value=6.7e-13 Score=102.96 Aligned_cols=114 Identities=26% Similarity=0.437 Sum_probs=88.4
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
.|.|+.+.|-+|.|+............... .+. ..-..+...|||+||.+.+++++|+.+|++||.|
T Consensus 239 aLsGqrllg~pv~vq~sEaeknr~a~~s~a-----------~~~--k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~I 305 (549)
T KOG0147|consen 239 ALSGQRLLGVPVIVQLSEAEKNRAANASPA-----------LQG--KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKI 305 (549)
T ss_pred hhcCCcccCceeEecccHHHHHHHHhcccc-----------ccc--cccccchhhhhhcccccCchHHHHhhhccCcccc
Confidence 478999999999998877654331110000 000 0111223339999999999999999999999999
Q ss_pred EEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 83 ~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..|.+..+ +||+|++|.+.++|.+|+..|||..|.|+.|+|..-..+
T Consensus 306 e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 306 ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred eeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99988765 799999999999999999999999999999999887644
No 55
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=7.4e-14 Score=94.83 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+.-|||+|||+..|+.+|..+|++||.|..|.+++| +||||+.|++-.+...|+..|||..|.||.|+|.-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45688999999999999999999999999999999875 799999999999999999999999999999999876
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 5
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=4.8e-12 Score=91.98 Aligned_cols=74 Identities=36% Similarity=0.682 Sum_probs=69.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
..+|||+|||..+++++|+++|..||.+..+.+..+ +|+|||+|.+.+.|..|+..++|..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999988888654 59999999999999999999999999999999999653
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=5.1e-12 Score=97.88 Aligned_cols=75 Identities=31% Similarity=0.583 Sum_probs=71.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..+||||+|++++++.|..+|+..|.|..+++..| +||+|++|.+.+.+.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999998765 799999999999999999999999999999999999755
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=6e-12 Score=91.21 Aligned_cols=72 Identities=28% Similarity=0.588 Sum_probs=68.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.+|||+|||..+++.+|+.+|++||+|.+|.|+ +-|+||..++...+..|+..|||.+|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999999 679999999999999999999999999999999998876
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.30 E-value=1.4e-11 Score=86.38 Aligned_cols=78 Identities=26% Similarity=0.521 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HhcccCCeEEEEeeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQ----PFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
+..||||.||+..+..++|+. +|++||.|..|...+ -+|-|||.|.+.+.|..|+..|+|..+.|+.++|.||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 344999999999999988776 999999999987765 3799999999999999999999999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
+....
T Consensus 88 ~s~sd 92 (221)
T KOG4206|consen 88 KSDSD 92 (221)
T ss_pred cCccc
Confidence 97653
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=2.2e-11 Score=92.38 Aligned_cols=80 Identities=26% Similarity=0.610 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCe-eC--CeEeEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTV-IG--KQSVRL 123 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~-~~--g~~l~v 123 (152)
...-++||+-+|..++|.+|+++|++||.|.+|.+++| +|||||.|.+.++|.+|+.+||... |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44568999999999999999999999999999999986 6999999999999999999998766 43 458999
Q ss_pred EecCCcccc
Q 031850 124 SWGRNPANK 132 (152)
Q Consensus 124 ~~a~~~~~~ 132 (152)
+||+....+
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999865433
No 61
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.25 E-value=5.8e-11 Score=89.66 Aligned_cols=128 Identities=18% Similarity=0.293 Sum_probs=96.1
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCC--------CCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHH
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSS--------QGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDL 72 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 72 (152)
|+.|+|+.|+|++|+|.++++..-......... +..-.+...++........++..++.+.|+|..++++++
T Consensus 352 ~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~l 431 (492)
T KOG1190|consen 352 MEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDL 431 (492)
T ss_pred HHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHH
Confidence 467999999999999999998653322211111 111122333444444555678899999999999999999
Q ss_pred HHHhcccCCe-EEEEe-eCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCe-EeEEEecCC
Q 031850 73 RQPFSQYGEI-ASVKI-PVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRN 128 (152)
Q Consensus 73 ~~~f~~~g~v-~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~ 128 (152)
+..|...|.. ...++ ..++.++++.+.+.|+|..|+..++.+.+++. .|+|+|.+.
T Consensus 432 k~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 432 KNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred HHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999988855 44444 34789999999999999999999999999855 999999874
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=5.4e-11 Score=88.06 Aligned_cols=80 Identities=44% Similarity=0.783 Sum_probs=71.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEEecC
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 127 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~ 127 (152)
++.+....+|||++|...+++.+|++.|.+||+|..+.+...+++|||+|.+.++|+.|...+ +-..|+|.+|.|.|++
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 444556789999999999999999999999999999999988999999999999999987655 5555899999999999
Q ss_pred C
Q 031850 128 N 128 (152)
Q Consensus 128 ~ 128 (152)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 63
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=5.6e-11 Score=95.69 Aligned_cols=79 Identities=33% Similarity=0.733 Sum_probs=74.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
++||||+.|+..+++.+|..+|+.||.|..|.+...++||||.+....+|.+|+..|....+.++.|+|.||....-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998665443
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.6e-11 Score=87.20 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=74.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
....+.+++|||-.||.+..+.+|...|-+||.|...++..| +.|+||.|+++.+++.||..|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 344567899999999999999999999999999998888764 78999999999999999999999999999999
Q ss_pred EEecCCcc
Q 031850 123 LSWGRNPA 130 (152)
Q Consensus 123 v~~a~~~~ 130 (152)
|...+|+.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99988764
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.19 E-value=2.6e-10 Score=80.14 Aligned_cols=124 Identities=21% Similarity=0.326 Sum_probs=93.3
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCC---------------------CCCC----CCCCCCCCCCCCCCCCCCCc
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYS---------------------SQGG----YASNGAPGQGPQSEGDSSNT 56 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~---------------------~~~~----~~~~~~~~~~~~~~~~~~~~ 56 (152)
..|+|..+.|++|+|++|..+.....+..+. .++. ...+.++.. .....++..
T Consensus 70 r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~--~~~~~ppn~ 147 (221)
T KOG4206|consen 70 RALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF--LAQMAPPNN 147 (221)
T ss_pred HHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc--cccCCCCce
Confidence 5799999999999999999876443331110 0000 000111111 123356778
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEEecC
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGR 127 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 127 (152)
.+++.|||..++.+.+..+|.+|.....+++... .+.|||+|.+...|..|...+.|..|. ...+.|.+++
T Consensus 148 ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 148 ILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999999999999998888888764 689999999999999999999999987 7888888875
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.5e-11 Score=90.64 Aligned_cols=71 Identities=25% Similarity=0.605 Sum_probs=65.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEee------CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~------~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.++||||.+.+.+.++.|+..|.+||+|+.+.+. +++|||||+|+-+|.|+.|++.|||..++||.|+|-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 5789999999999999999999999999998764 3489999999999999999999999999999999874
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=2.2e-10 Score=67.72 Aligned_cols=56 Identities=30% Similarity=0.580 Sum_probs=48.0
Q ss_pred HHHHHHHhc----ccCCeEEEE-ee--C------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 69 DEDLRQPFS----QYGEIASVK-IP--V------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 69 ~~~l~~~f~----~~g~v~~~~-~~--~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
+++|+++|+ .||.|..+. +. . .+|++||.|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999998884 32 2 27999999999999999999999999999999863
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.16 E-value=3.8e-10 Score=86.07 Aligned_cols=76 Identities=22% Similarity=0.450 Sum_probs=68.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhc-ccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...+.+||.|||+++-|.+|+++|. +.|+|..|.+..| +|||.|+|.++|.+++|++.||.+.+.|++|+|+-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456699999999999999999997 5789999998865 799999999999999999999999999999999876
Q ss_pred CC
Q 031850 127 RN 128 (152)
Q Consensus 127 ~~ 128 (152)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 54
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.14 E-value=2.2e-10 Score=87.35 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|+|.|||+++||+.|++-|..||.|..+.++. .+..+.|.|.++++|++||..|+|..+.|+.|+|.|+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4568899999999999999999999999999998854 3556689999999999999999999999999999984
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=1.2e-09 Score=85.88 Aligned_cols=78 Identities=22% Similarity=0.466 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+..|||.+|...+-..+|+.+|++||.|.-.+++.+ +.|+||++.+.++|.+||..|+.+.|.|+-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44679999999999999999999999999988887653 689999999999999999999999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 8554
No 71
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.3e-10 Score=83.27 Aligned_cols=79 Identities=28% Similarity=0.540 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
..++..-|||..|.+.+++++|.-+|+.||.|..|.++++ -.||||+|++.+++++|.-.|.+..|+++.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3356678999999999999999999999999999999986 3699999999999999999999999999999999
Q ss_pred ecCCc
Q 031850 125 WGRNP 129 (152)
Q Consensus 125 ~a~~~ 129 (152)
|+.+-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 97643
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1e-09 Score=87.79 Aligned_cols=71 Identities=38% Similarity=0.591 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.|||.||++.++.++|...|...|.|..+.|... .|||||+|.+.+.|+.|+..|+|+.|+|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999987653 3999999999999999999999999999999999998
No 73
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.00 E-value=9.7e-09 Score=72.32 Aligned_cols=79 Identities=19% Similarity=0.356 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEee--CC-----CCEEEEEeCCHHHHHHHHHHhCCCeeC---CeEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VG-----KGCGFVQFANRENAEEALHKLNGTVIG---KQSV 121 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~--~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~---g~~l 121 (152)
....+||||.+||.++-..+|+.+|..|-.-+.+.+. .. +.+||+.|.+...|..|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4557899999999999999999999988544433332 11 369999999999999999999999985 8899
Q ss_pred EEEecCCcc
Q 031850 122 RLSWGRNPA 130 (152)
Q Consensus 122 ~v~~a~~~~ 130 (152)
++++|+...
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999998654
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.00 E-value=3.5e-09 Score=79.44 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=68.6
Q ss_pred EEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCE-EEEEeCCHHHHHHHHHHhCCCeeC--CeEeEEEecCCcccccCC
Q 031850 59 FVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRNPANKQAS 135 (152)
Q Consensus 59 ~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~~~~~~~~~ 135 (152)
-|-|--+.+|.+.|+.++...|+|.++.+++..|+ |+|+|++.+.|++|..+|||..|. .++|+|+||+|......+
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeee
Confidence 34566667999999999999999999998876665 999999999999999999999984 669999999998766555
Q ss_pred CCCC
Q 031850 136 LSPF 139 (152)
Q Consensus 136 ~~~~ 139 (152)
..+.
T Consensus 206 nd~D 209 (494)
T KOG1456|consen 206 NDKD 209 (494)
T ss_pred cCCc
Confidence 5444
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=1.9e-09 Score=80.50 Aligned_cols=105 Identities=25% Similarity=0.378 Sum_probs=85.5
Q ss_pred cccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEE
Q 031850 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 86 (152)
Q Consensus 7 ~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~ 86 (152)
+.|.||.|.+..+.++..... .........|||++||..++++++++.|.+||.|..+.
T Consensus 70 h~~dgr~ve~k~av~r~~~~~---------------------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 70 HKLDGRSVEPKRAVSREDQTK---------------------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred cccCCccccceeccCcccccc---------------------cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 568888888888887654320 01112567999999999999999999999999888877
Q ss_pred eeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 87 IPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 87 ~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
++.+ ++|+||.|.+++.+.+++. ..-+.|.|+.+.|..|.|+....
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred EeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 7653 7999999999999999985 68889999999999999875443
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.5e-09 Score=83.18 Aligned_cols=109 Identities=28% Similarity=0.529 Sum_probs=92.2
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|++|||..+.|++|.|.....+..+..... . ....-+.+|+.+++..+++..|..+|..+|
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~~~~------------------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g 192 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREAPLG------------------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYG 192 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhccccc------------------c-hhhhhhhhheeccccccchHHHHHhhcccC
Confidence 468999999999999999888755421100 1 223457899999999999999999999999
Q ss_pred CeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 81 ~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
.|..+.++.+ ++|+||.|.+.++|..|+..|++..+.+..+.|..+..
T Consensus 193 ~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 193 SITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred cceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999988763 79999999999999999999999999999999888765
No 77
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.85 E-value=1.6e-08 Score=70.27 Aligned_cols=78 Identities=17% Similarity=0.318 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccc-CCeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
.....-+|+..+|..+.+..+..+|.+| |.|..+++.+ ++|||||+|++.+.|.-|-+.||+..+.++-|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455678999999999999999999998 5777777754 37999999999999999999999999999999999
Q ss_pred ecCCc
Q 031850 125 WGRNP 129 (152)
Q Consensus 125 ~a~~~ 129 (152)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 97765
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.1e-09 Score=75.12 Aligned_cols=72 Identities=25% Similarity=0.588 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..+||++||+.+.+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+..|++..+.|-.+.|.|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999998887 788999999999999999999999999999999999853
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=4.4e-09 Score=82.25 Aligned_cols=71 Identities=31% Similarity=0.487 Sum_probs=65.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
+.+..+|+|-|||..+++++|+++|+.||+|..++.-. .++.+||+|-+...|++|++.|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45678999999999999999999999999999976544 479999999999999999999999999999888
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.83 E-value=7.6e-08 Score=71.64 Aligned_cols=130 Identities=15% Similarity=0.251 Sum_probs=88.7
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCC------------CCCCCCCCCCCCCCCCCCCCceEEEcCCCCC--
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG------------GYASNGAPGQGPQSEGDSSNTTIFVGGLDPN-- 66 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-- 66 (152)
++.|++..|.|+.|+|..|.-+............. ...-...+.. ..+......++|.+.|+-..
T Consensus 200 ~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~ 278 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPED 278 (382)
T ss_pred HHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHH
Confidence 35789999999999999988654332111111100 0000011111 22333355689999998432
Q ss_pred --CC-------HHHHHHHhcccCCeEEEEee--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 67 --VT-------DEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 67 --~~-------~~~l~~~f~~~g~v~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
.+ .++|.+-+.+||.|.+|.+. ...|.+.|.|.+.++|..||+.|+|..++||.|..+.-.....
T Consensus 279 ~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 279 FEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 23 24556668899999999887 3579999999999999999999999999999999888765443
No 81
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.82 E-value=2.7e-08 Score=71.77 Aligned_cols=78 Identities=28% Similarity=0.507 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
....+|+|.|||+.+++++|+++|+.||.+..+.+..+ .|.|-|.|...++|.+|++.++|..++|+.+++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34478999999999999999999999998888777543 5899999999999999999999999999999988887
Q ss_pred Ccc
Q 031850 128 NPA 130 (152)
Q Consensus 128 ~~~ 130 (152)
++.
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 654
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=4.8e-08 Score=78.54 Aligned_cols=78 Identities=41% Similarity=0.844 Sum_probs=70.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC---------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
...+..+.+||+||++.++++.|...|..||+|..++++- ++-|+||-|-+..+|++|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3456678999999999999999999999999998887752 3679999999999999999999999999999
Q ss_pred eEEEecC
Q 031850 121 VRLSWGR 127 (152)
Q Consensus 121 l~v~~a~ 127 (152)
+++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999995
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.75 E-value=6.7e-08 Score=74.89 Aligned_cols=74 Identities=31% Similarity=0.492 Sum_probs=63.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC----C--CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~----~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
..+|||.|||.+++..+|+++|..||.|+...|.. + .+||||+|.+.++++.|+.+ +-..|++++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45699999999999999999999999998876643 2 28999999999999999986 46678999999998876
Q ss_pred c
Q 031850 129 P 129 (152)
Q Consensus 129 ~ 129 (152)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 4
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.73 E-value=8.5e-08 Score=71.39 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeE--------EEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK 118 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g 118 (152)
....+.|||+|||.++|.+++.++|+++|-|. +|++.++ +|-|++.|--.++...|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567899999999999999999999999664 4666654 7899999999999999999999999999
Q ss_pred eEeEEEecCCc
Q 031850 119 QSVRLSWGRNP 129 (152)
Q Consensus 119 ~~l~v~~a~~~ 129 (152)
+.|+|+.|+-+
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999999743
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.9e-08 Score=70.29 Aligned_cols=118 Identities=19% Similarity=0.356 Sum_probs=86.5
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
|..+||.+|.|-.+.|.++....... +.+.++ ...+............+.+.|.+++..+.+.+|.+.|.++|
T Consensus 52 v~~l~~~~l~~e~~vve~~r~~~~~~----g~~~~g---~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 52 VHDLDGKELCGERLVVEHARGKRRGR----GRPRGG---DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred cchhcCceecceeeeeeccccccccc----CCCCCC---CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC
Confidence 45688999998888888887643221 000000 00111222233345667899999999999999999999999
Q ss_pred CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 81 EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 81 ~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.+..... ..+++||+|...+++.+|+..|+|..+.++.|.+.+.-
T Consensus 125 ~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 125 EVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred CCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 8844433 47899999999999999999999999999999995553
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.73 E-value=1.8e-08 Score=75.25 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..+++||++|++.++++.|++.|.+||+|..|.++++ +||+||+|.+.+...+++. ..-+.|.|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5789999999999999999999999999999999874 6999999999999999986 35577999999999998
Q ss_pred Cccccc
Q 031850 128 NPANKQ 133 (152)
Q Consensus 128 ~~~~~~ 133 (152)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 776443
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.69 E-value=1.4e-07 Score=71.67 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=69.5
Q ss_pred CceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 55 NTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 55 ~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
...|.|.||... +|.+.|..+|.-||.|.+|++... +.-|+|.|.+...|+-|+..|+|..|.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 578889999776 999999999999999999999765 4679999999999999999999999999999999998654
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=8.4e-08 Score=75.42 Aligned_cols=124 Identities=21% Similarity=0.346 Sum_probs=81.6
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCC--CCCCCCCCceEEEcCC--CCC-CCH------
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGP--QSEGDSSNTTIFVGGL--DPN-VTD------ 69 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~nl--~~~-~~~------ 69 (152)
++.|||+.++++++.|+.|-............ .. ...+.-.. .+....+...|.+-|+ +.+ .++
T Consensus 348 ~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~--~~---~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeI 422 (500)
T KOG0120|consen 348 IAGLNGMQLGDKKLVVQRAIVGASNANVNFNI--SQ---SQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEI 422 (500)
T ss_pred hcccchhhhcCceeEeehhhccchhccccCCc--cc---cccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHH
Confidence 46799999999999999988765432221110 00 00111111 1222233444444443 111 122
Q ss_pred -HHHHHHhcccCCeEEEEeeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 70 -EDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 70 -~~l~~~f~~~g~v~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
++++.-+++||.|..|.+++. .|..||+|.+.+++++|.+.|+|..+.|+.|...|-...
T Consensus 423 lEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 423 LEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 344555789999999988763 589999999999999999999999999999999997643
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=1e-08 Score=71.95 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=68.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.....+|||+|+...++++-|.++|-+.|+|.++.|..+ -.||||.|.++....-|++.+||..+.+..+.+.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 345789999999999999999999999999999999864 2599999999999999999999999999998887765
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=2.2e-07 Score=58.07 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccc--CCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeC----CeEeEE
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG----KQSVRL 123 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~----g~~l~v 123 (152)
+||.|.|||...+.++|.+++... |....+.++.| .|||||.|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999998888643 45555555543 699999999999999999999999974 567899
Q ss_pred EecCCcc
Q 031850 124 SWGRNPA 130 (152)
Q Consensus 124 ~~a~~~~ 130 (152)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9998654
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.65 E-value=1.8e-07 Score=73.34 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=59.3
Q ss_pred CCceEEEcCCC--CCCC--------HHHHHHHhcccCCeEEEEeeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 54 SNTTIFVGGLD--PNVT--------DEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 54 ~~~~l~v~nl~--~~~~--------~~~l~~~f~~~g~v~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
++.++.+.|+- ...| .+++.+-+.+||+|.+|.+-... |+.||.|.+.+.|..|+..|||.+|.|+-|.
T Consensus 442 ~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~It 521 (549)
T KOG0147|consen 442 PTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMIT 521 (549)
T ss_pred ccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeE
Confidence 44566677762 2222 24566667999999999887654 9999999999999999999999999999999
Q ss_pred EEecC
Q 031850 123 LSWGR 127 (152)
Q Consensus 123 v~~a~ 127 (152)
+.|-.
T Consensus 522 a~~~~ 526 (549)
T KOG0147|consen 522 AKYLP 526 (549)
T ss_pred EEEee
Confidence 99865
No 92
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=1.2e-06 Score=60.25 Aligned_cols=113 Identities=21% Similarity=0.334 Sum_probs=85.1
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
--||..++|.+++|..+......... ....+.+............+++......|.|.+||..-++++|++...+.|.|
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~-~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdv 142 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDR-RGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDV 142 (241)
T ss_pred cccccccCcceEEEEeccCCCccccc-ccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCe
Confidence 35788999999999998877633222 11122222223333333445555667899999999999999999999999999
Q ss_pred EEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 83 ASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 83 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
....+.++ |.+.|+|...++-+-|+..|....+.
T Consensus 143 Cfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 143 CFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 99988875 69999999999999999999877753
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.58 E-value=1.7e-06 Score=65.33 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEeeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
..+++-+.|-+|... ++.+.|..+|-.||.|.++++++.+ |-|+|++.+..+.++|+..||+..+-|.+|.|++++.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 345678899999887 7778999999999999999998864 8999999999999999999999999999999999873
No 94
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=2.3e-07 Score=66.89 Aligned_cols=76 Identities=29% Similarity=0.487 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....+||+|+.+.++.+++...|+.||.+..+.+..+ +|++||+|.+.+.+..++. |+|..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 45678999999999999999999999999987777653 6899999999999999998 9999999999999998
Q ss_pred CCc
Q 031850 127 RNP 129 (152)
Q Consensus 127 ~~~ 129 (152)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 754
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.56 E-value=6.6e-07 Score=53.83 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=48.4
Q ss_pred ceEEEcCCCCCCCHHHH----HHHhcccC-CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 56 TTIFVGGLDPNVTDEDL----RQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l----~~~f~~~g-~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..|||.|||...+...+ ++++..+| .|..+ . .+-|.+.|.+.+.|.+|.+.|+|...-|++|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999887664 56666777 56555 2 6899999999999999999999999999999999975
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=3.6e-07 Score=71.92 Aligned_cols=124 Identities=19% Similarity=0.355 Sum_probs=87.7
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
.+++..+.|+++++.......+....--.... ...................+||++||...++..+.++...||.+
T Consensus 241 ~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~----~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 241 ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ----LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred cccchhhCCCCceecccccccCCccchhhhcc----ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 35677778888888665544333211000000 00001111112222345789999999999999999999999988
Q ss_pred EEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 83 ASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 83 ~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
....+.. ++||||.+|.+......|+..|||..++++.|.|..|....
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 7766654 37999999999999999999999999999999999998654
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.46 E-value=6.2e-07 Score=57.06 Aligned_cols=69 Identities=35% Similarity=0.568 Sum_probs=45.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCC-----eeCCeEeEEE
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-----VIGKQSVRLS 124 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~-----~~~g~~l~v~ 124 (152)
+.|.|.+++..++.++|++.|+.||.|..|.+..+..-|||.|.+.+.|+.|+..+.-. .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57889999999999999999999999999999988889999999999999999877433 3445544443
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.41 E-value=2.8e-07 Score=65.07 Aligned_cols=63 Identities=32% Similarity=0.623 Sum_probs=54.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
..+|||.||...+++++|+.+|+.|.....+++.. +..+||++|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 46899999999999999999999997666665544 3468999999999999999999998763
No 99
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.39 E-value=8.1e-07 Score=63.80 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....||.+-|.-+++++.|-..|.+|-.....++.++ +||+||.|.+..++.+|+..|+|..++.+.|+++-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45679999999999999999999999976666666653 799999999999999999999999999999887654
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.34 E-value=2.8e-06 Score=66.06 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=63.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.....-|-+.+|||++|+++|.++|+.++ |..+.+.+. .|-|||+|.+.+++++|++ .+...+..+.|.|--+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34556888999999999999999999986 777777664 5899999999999999997 68888899999987664
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.08 E-value=1.2e-05 Score=60.17 Aligned_cols=74 Identities=22% Similarity=0.576 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCCHHH----H--HHHhcccCCeEEEEeeCC-------CC--EEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 56 TTIFVGGLDPNVTDED----L--RQPFSQYGEIASVKIPVG-------KG--CGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~----l--~~~f~~~g~v~~~~~~~~-------~g--~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
.-+||-+|++.+..+. | .++|.+||.|.++.+-+. .+ -.||+|.+.++|.+++...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4679999999876655 2 588999999999987542 23 3499999999999999999999999999
Q ss_pred eEEEecCCc
Q 031850 121 VRLSWGRNP 129 (152)
Q Consensus 121 l~v~~a~~~ 129 (152)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999998654
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.99 E-value=5.4e-05 Score=59.11 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=59.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEE-EEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....|-+.+||+.|++++|.++|+..--|.. +.++. ..|-|||.|++.+.|++|+. -|...|+.+-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 45678999999999999999999997654433 22332 25889999999999999997 4777889998888665
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 103
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.87 E-value=3.4e-05 Score=58.04 Aligned_cols=79 Identities=28% Similarity=0.362 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPV------GKGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
.....+|||-+||..++++++.++|.++|.|.. +.+.+ .++-|.|.|.+..+|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345679999999999999999999999986632 22222 3799999999999999999999999999
Q ss_pred CeEeEEEecCCcc
Q 031850 118 KQSVRLSWGRNPA 130 (152)
Q Consensus 118 g~~l~v~~a~~~~ 130 (152)
+..|+|..|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999997554
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.84 E-value=8.6e-05 Score=46.70 Aligned_cols=72 Identities=26% Similarity=0.362 Sum_probs=52.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEE-------------eeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCe-E
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-------------IPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-S 120 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-------------~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~ 120 (152)
..-|.|-+.|.. ....+.+.|++||.|.... ......+..|.|++..+|.+||. .||..+.|. -
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456888888887 4466778899999988774 44557799999999999999996 699999886 5
Q ss_pred eEEEecCC
Q 031850 121 VRLSWGRN 128 (152)
Q Consensus 121 l~v~~a~~ 128 (152)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55877753
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.83 E-value=2.8e-05 Score=57.91 Aligned_cols=81 Identities=33% Similarity=0.568 Sum_probs=69.8
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 53 SSNTTIF-VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~-v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
....++| |+++++.++.++|+..|..+|.|..++++.+ .|+++|.|.....+..++.. +...+.++++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445666 9999999999999999999999999888653 68999999999999999887 88889999999999
Q ss_pred cCCcccccC
Q 031850 126 GRNPANKQA 134 (152)
Q Consensus 126 a~~~~~~~~ 134 (152)
..+.+....
T Consensus 261 ~~~~~~~~~ 269 (285)
T KOG4210|consen 261 DEPRPKSDG 269 (285)
T ss_pred CCCCccccc
Confidence 998765543
No 106
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.81 E-value=4.7e-05 Score=57.31 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccC--CeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeE-eEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQS-VRL 123 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~-l~v 123 (152)
....++||+||-|++|+++|.+.+...| .+..++++. ++|||+|...+..+.++.++.|..++|.|+. +.+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4456899999999999999998887666 444444443 3899999999999999999999999999884 444
Q ss_pred EecC
Q 031850 124 SWGR 127 (152)
Q Consensus 124 ~~a~ 127 (152)
.|-+
T Consensus 158 ~~NK 161 (498)
T KOG4849|consen 158 SYNK 161 (498)
T ss_pred ccch
Confidence 4433
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.80 E-value=7.9e-05 Score=41.39 Aligned_cols=52 Identities=29% Similarity=0.640 Sum_probs=42.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHH
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 108 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~ 108 (152)
+.|-|.+.+....+ .+...|..||.|....+.......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 45778888876654 45568889999999988877889999999999999985
No 108
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.71 E-value=0.00035 Score=46.68 Aligned_cols=74 Identities=24% Similarity=0.427 Sum_probs=52.7
Q ss_pred CCCceEEEcCCC------CCCCH---HHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 53 SSNTTIFVGGLD------PNVTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 53 ~~~~~l~v~nl~------~~~~~---~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
++..||.|.=+. ....+ .+|.+.|+.||.+.-+++. .+.-.|+|.+.+.|-+|+. ++|..++|+.|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv--~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV--GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE--TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe--CCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 456677665444 12332 2567788999999888887 4688899999999999995 8999999999999
Q ss_pred EecCCc
Q 031850 124 SWGRNP 129 (152)
Q Consensus 124 ~~a~~~ 129 (152)
+...|.
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 987654
No 109
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.68 E-value=2.3e-05 Score=56.52 Aligned_cols=67 Identities=27% Similarity=0.467 Sum_probs=57.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC--------------C----CEEEEEeCCHHHHHHHHHHhCCCe
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------------K----GCGFVQFANRENAEEALHKLNGTV 115 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--------------~----g~afv~f~~~~~a~~a~~~l~g~~ 115 (152)
....||+++||+.++...|+++|+.||.|-+|.+... . .-+.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999877531 1 236699999999999999999999
Q ss_pred eCCeE
Q 031850 116 IGKQS 120 (152)
Q Consensus 116 ~~g~~ 120 (152)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 110
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.66 E-value=0.00016 Score=53.28 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=49.3
Q ss_pred HHHHHHhcccCCeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 70 EDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 70 ~~l~~~f~~~g~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+++.+-+.+||.|.+|.+... ---.||+|...++|.+|+..|||..|+|+.+..+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 456677899999999877642 2458999999999999999999999999999988754
No 111
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.63 E-value=0.00011 Score=56.59 Aligned_cols=66 Identities=29% Similarity=0.392 Sum_probs=55.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-------------------CCEEEEEeCCHHHHHHHHHH
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------------------KGCGFVQFANRENAEEALHK 110 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-------------------~g~afv~f~~~~~a~~a~~~ 110 (152)
..+.+.++|.+.|||.+-.-+.|.++|..+|.|..|++... +-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999888999999999999999988642 45899999999999999987
Q ss_pred hCCCe
Q 031850 111 LNGTV 115 (152)
Q Consensus 111 l~g~~ 115 (152)
|+...
T Consensus 306 ~~~e~ 310 (484)
T KOG1855|consen 306 LNPEQ 310 (484)
T ss_pred hchhh
Confidence 75433
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.53 E-value=0.0009 Score=54.69 Aligned_cols=69 Identities=28% Similarity=0.356 Sum_probs=57.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCe-EEEEeeC-C----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPV-G----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~-~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
-|-+.|+|++++-++|.++|..|-.+ -.|.+.. + .|-|.|.|++.++|.+|...|++..|..+.|.+..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 67899999999999999999999633 2233322 2 58899999999999999999999999999988764
No 113
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.47 E-value=5.9e-05 Score=54.40 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=47.6
Q ss_pred HHHHHhc-ccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 71 DLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 71 ~l~~~f~-~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+|...|+ +||.|..+.+... .|-+||.|...++|++|+..||+..+.|++|...+.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3344445 8899988866543 6899999999999999999999999999999988864
No 114
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.42 E-value=0.00017 Score=57.63 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-cCCeEEEEee-CCCCEEEEEeCCHHHHHHHHHHhCCCee---CCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIP-VGKGCGFVQFANRENAEEALHKLNGTVI---GKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~---~g~~l~v~~a 126 (152)
......|||.||-.-+|..+|+.++.. .|.|... |+ +-+..|||.|.+.++|.....+|||..+ +.+.|.+.|+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 345678999999999999999999995 4555544 43 2378999999999999999999999997 5778998887
Q ss_pred CC
Q 031850 127 RN 128 (152)
Q Consensus 127 ~~ 128 (152)
.-
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 63
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.41 E-value=0.00042 Score=57.86 Aligned_cols=80 Identities=23% Similarity=0.480 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEecCC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRN 128 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~ 128 (152)
.......+++++|..++....|...|..||.|..+.+-....|++|.|++...++.|+..|-|..|+| +.+.|.|+.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 44567899999999999999999999999999999998888999999999999999999999999974 4799999986
Q ss_pred cc
Q 031850 129 PA 130 (152)
Q Consensus 129 ~~ 130 (152)
..
T Consensus 531 ~~ 532 (975)
T KOG0112|consen 531 PG 532 (975)
T ss_pred CC
Confidence 64
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0015 Score=52.16 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=60.3
Q ss_pred CCCceEEEcCCCCCCCH------HHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeC-CeE
Q 031850 53 SSNTTIFVGGLDPNVTD------EDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQS 120 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~------~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~ 120 (152)
.-...|+|.|+|.--.. ..|..+|+++|++....++.+ +|+.|++|.+...|+.|++.|||+.|+ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 44578999999875332 235678999999999888743 799999999999999999999999987 667
Q ss_pred eEEEecC
Q 031850 121 VRLSWGR 127 (152)
Q Consensus 121 l~v~~a~ 127 (152)
..|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776554
No 117
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.09 E-value=0.0031 Score=44.08 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=48.5
Q ss_pred CHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhC--CCeeCCeEeEEEecCCc
Q 031850 68 TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 68 ~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~~ 129 (152)
....|+++|..++.+..+...++-+-..|.|.+.+.|.+|...|+ +..+.|..+++.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347889999999998888888888899999999999999999999 99999999999999543
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.04 E-value=0.0018 Score=49.62 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=60.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccC-CeEE--EEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIAS--VKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~--~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
.....+|.+.+||+..+.++|..+|..|. .|.. +.+.- ..|-|||.|.+.+.|..|....+.+....+.|.|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 34467899999999999999999998886 3333 44432 2589999999999999998887877777888888
Q ss_pred EecC
Q 031850 124 SWGR 127 (152)
Q Consensus 124 ~~a~ 127 (152)
--+.
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 6664
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0025 Score=50.40 Aligned_cols=56 Identities=29% Similarity=0.580 Sum_probs=45.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC---------CCC---EEEEEeCCHHHHHHHHHHh
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKG---CGFVQFANRENAEEALHKL 111 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g---~afv~f~~~~~a~~a~~~l 111 (152)
...||||+||++++|+.|...|..||.+ .+.++. .+| |+|+.|+++...+.-+.+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4689999999999999999999999963 444542 256 9999999998888766544
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.99 E-value=0.00073 Score=52.26 Aligned_cols=75 Identities=24% Similarity=0.397 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCe-eCCeEeEEEecCCcc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV-IGKQSVRLSWGRNPA 130 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~-~~g~~l~v~~a~~~~ 130 (152)
..+|++||.+.++..+|..+|.....-..-.++...|++||.+.+..-|.+|++.++|.. +.|.++.+.+..++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 468999999999999999999754211122233347999999999999999999999887 789999999987664
No 121
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.96 E-value=0.0069 Score=40.34 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=56.4
Q ss_pred CCCCCCceEEEcCCCCCCC----HHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 50 EGDSSNTTIFVGGLDPNVT----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~----~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
...++..+|.|.=|...+. -..+...++.||+|..+.. +++.-|.|.|.+..+|..|+.+++. ...|.-+.+.|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3456778898886665543 3345556788999999854 4577899999999999999999876 55677777777
Q ss_pred c
Q 031850 126 G 126 (152)
Q Consensus 126 a 126 (152)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 122
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.93 E-value=0.0012 Score=50.58 Aligned_cols=71 Identities=20% Similarity=0.416 Sum_probs=58.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE-Ee
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL-SW 125 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v-~~ 125 (152)
..|.|.||.+.++.++++.+|...|.|..+.++.. ...|||.|.+...+..|. .|..+.+-++.|.| -|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 38999999999999999999999999999888652 468999999999999886 57777766665444 44
Q ss_pred cC
Q 031850 126 GR 127 (152)
Q Consensus 126 a~ 127 (152)
+.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.78 E-value=0.011 Score=33.74 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=43.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccc---CCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHh
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPVGKGCGFVQFANRENAEEALHKL 111 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l 111 (152)
...|+|.+++. ++.++++.+|..| ....++.++.|. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 46789999864 7778899999988 135677887654 6779999999999999754
No 124
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0071 Score=47.88 Aligned_cols=58 Identities=33% Similarity=0.507 Sum_probs=51.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhc-ccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHH
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG------KGCGFVQFANRENAEEALH 109 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~ 109 (152)
-.+.+|||||+||.-++.++|-.+|. .||.|..+-|-.| +|-|-|.|.+-.+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 35678999999999999999999998 7999999887655 7899999999999888886
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.63 E-value=0.0044 Score=45.00 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=49.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhC
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLN 112 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~ 112 (152)
..|||.||+..++.+.+...|+.||.|....+..| .+-++|.|...-.+..|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999877655543 4778999999999999888763
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.62 E-value=0.025 Score=43.55 Aligned_cols=68 Identities=31% Similarity=0.392 Sum_probs=49.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccc----CCeEEEEee-C--C--CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQY----GEIASVKIP-V--G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~----g~v~~~~~~-~--~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
--.|.+.+||+++++.++.++|.+- |....+.++ + + .|-|||.|..++.|+.|+.. |...++-|.|.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 4578889999999999999999632 122333332 2 2 58999999999999999974 555555555443
No 127
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.49 E-value=0.045 Score=35.05 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccC-CeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
..+.+...|..++.+.|..+.+.+- .|..+++.++ +-.+++.|.+.+.|......+||+.++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444445555566667765555554 6778888875 457999999999999999999999974
No 128
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.47 E-value=0.005 Score=48.31 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=63.2
Q ss_pred CceEEEcCCCCCCC-HHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 55 NTTIFVGGLDPNVT-DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 55 ~~~l~v~nl~~~~~-~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
.+.+-+.-.++..+ ..+|...|.+||+|..|.+--.--.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.+.+...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~tn 450 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPVTN 450 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCcccC
Confidence 34556666677754 48899999999999999886555689999999999977764 69999999999999999865444
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.23 E-value=7.5e-05 Score=57.54 Aligned_cols=98 Identities=19% Similarity=0.374 Sum_probs=78.4
Q ss_pred ccccC-cccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 2 TEMNG-VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 2 ~~lng-~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
+.++| +++.|+++.|..+.++..+ ...+-|.|+|+...++.|..++..||
T Consensus 55 e~~sgk~elqGkr~e~~~sv~kkqr-----------------------------srk~Qirnippql~wevld~Ll~qyg 105 (584)
T KOG2193|consen 55 ETLSGKVELQGKRQEVEHSVPKKQR-----------------------------SRKIQIRNIPPQLQWEVLDSLLAQYG 105 (584)
T ss_pred HhhchhhhhcCceeeccchhhHHHH-----------------------------hhhhhHhcCCHHHHHHHHHHHHhccC
Confidence 45555 6778888888777666533 34588999999999999999999999
Q ss_pred CeEEEEeeC-C--CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 81 EIASVKIPV-G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 81 ~v~~~~~~~-~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
.+..|.... + ....-|.|...+.++.|+..|+|..+....+++.|--.
T Consensus 106 ~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 106 TVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred CHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 998886543 2 23445789999999999999999999999999998653
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.01 E-value=0.02 Score=47.20 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEE-EEeeC---C--CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV---G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~---~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+..|||..||..+++..+-+.|...-.|+. |.+.. + ++.|||.|..++++..|...-+-+.++.+.|+|.-.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 45679999999999999999999987666655 54432 3 589999999998888887766777788888998764
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 512 ~ 512 (944)
T KOG4307|consen 512 A 512 (944)
T ss_pred h
Confidence 3
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.78 E-value=0.0034 Score=47.16 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=60.1
Q ss_pred ceEEEcCCCCCCCHHHH---HHHhcccCCeEEEEeeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 56 TTIFVGGLDPNVTDEDL---RQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l---~~~f~~~g~v~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
..+||-+|+....++.+ .+.|.+||.|..+.+.++ ..-++|+|...++|..||..-+|....|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 46788888888665544 356889999999877653 234899999999999999999999999999998
Q ss_pred EecCCc
Q 031850 124 SWGRNP 129 (152)
Q Consensus 124 ~~a~~~ 129 (152)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 888765
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.78 E-value=0.0019 Score=54.12 Aligned_cols=74 Identities=27% Similarity=0.553 Sum_probs=64.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+.+||++||+..+++.+|+..|..+|.|..|.+.. +..++||.|.+...+-+|+..+.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4578999999999999999999999999999987754 2479999999999999999999999887666666666
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.70 E-value=0.0082 Score=50.27 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCee--CCeEeEEEecCCccccc
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~~~~~ 133 (152)
+.++.|.+-..+...|-.+|..||.|......++--+|.|+|.+.+.|..|+++|+|+.+ .|-+.+|.+|++-+-..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 345555566677788999999999999998888888999999999999999999999995 48889999999765443
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.57 E-value=0.023 Score=46.37 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=60.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
++..++||+|+...+..+-+..+...+|-|..++... |+|.+|.....+.+|+..++-..++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 5678999999999999999999999999887765542 999999999999999998888888888776655
No 135
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.48 E-value=0.16 Score=30.81 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=41.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 112 (152)
..+-.+|. .|...-..+|.++|++||.| .|.++. -.-|||...+.+.+..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~-dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIN-DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEEC-TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEc-CCcEEEEeecHHHHHHHHHHhc
Confidence 34455555 99999999999999999974 444554 3689999999999999998775
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.38 E-value=0.012 Score=49.18 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=62.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
...++|.|.|+..|.+.++.++..+|.+..+.++. .+|.|+|.|.++.++.+++.......+.-+.+.|....|.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 35789999999999999999999999888776543 2799999999999999998888887777777777775543
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.056 Score=40.35 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=53.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCe-EeEEEecCCc
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRNP 129 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 129 (152)
=|-|-++|..-. .-|...|++||.|.+.......-+-+|.|.+.-+|++||. .+|..|+|. -|-|+-|..+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 345556665533 4566789999999887666555688999999999999996 699999877 4567666544
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.21 E-value=0.031 Score=38.85 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=50.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcc-cCCe---EEEEeeC--------CCCEEEEEeCCHHHHHHHHHHhCCCeeC---C
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQ-YGEI---ASVKIPV--------GKGCGFVQFANRENAEEALHKLNGTVIG---K 118 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v---~~~~~~~--------~~g~afv~f~~~~~a~~a~~~l~g~~~~---g 118 (152)
....|.|++||+.++++++++.++. ++.- ..+.-.. ...-|||.|.+.+++......++|+.+. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999998887766 5543 2332111 1367999999999999999999998863 2
Q ss_pred --eEeEEEecCC
Q 031850 119 --QSVRLSWGRN 128 (152)
Q Consensus 119 --~~l~v~~a~~ 128 (152)
..-.|.+|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2567777753
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.15 E-value=0.00096 Score=55.48 Aligned_cols=62 Identities=34% Similarity=0.539 Sum_probs=49.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEee--C----CCCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--V----GKGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~--~----~~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
.++||+||+..+.+.+|...|..+|.+..+.+. . -+|.||++|...+.+.+|+....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 578999999999999999999999876655443 1 2799999999999999999754444433
No 140
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.10 E-value=0.059 Score=43.41 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc--cCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhC--CCeeCCeEeEEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLS 124 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~--~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l~v~ 124 (152)
...+.|.+.-||..+-.++++.+|.. +-.+..|.+-. ..-.||+|++..+|+.|.+.|. -++|.|+.|..+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~-N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH-NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee-cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 45678899999999999999999974 66777777643 4567999999999999987663 233566655433
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.43 E-value=0.082 Score=42.44 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=35.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCee---C-CeEeEEEecCCccc
Q 031850 90 GKGCGFVQFANRENAEEALHKLNGTVI---G-KQSVRLSWGRNPAN 131 (152)
Q Consensus 90 ~~g~afv~f~~~~~a~~a~~~l~g~~~---~-g~~l~v~~a~~~~~ 131 (152)
+.|||||.|.+.+.+..+.+++||+.+ + .+...+.||+-+..
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 369999999999999999999999985 3 55778888886643
No 142
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.25 E-value=0.13 Score=36.83 Aligned_cols=85 Identities=22% Similarity=0.322 Sum_probs=53.4
Q ss_pred CccccCcccCCcceEEeecCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccc
Q 031850 1 MTEMNGVYCSSRPMRIGAATP-RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 79 (152)
++.|+|..|.|++|.|.++.. .......... ......................+++.+++..++...+...|..+
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (306)
T COG0724 174 IEELNGKELEGRPLRVQKAQPASQPRSELSNN----LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR 249 (306)
T ss_pred HHHcCCCeECCceeEeeccccccccccccccc----cchhhhccccccccccccccceeeccccccccchhHHHHhcccc
Confidence 357899999999999999764 1111100000 00000000011112333557789999999999999999999999
Q ss_pred CCeEEEEeeC
Q 031850 80 GEIASVKIPV 89 (152)
Q Consensus 80 g~v~~~~~~~ 89 (152)
|.+....+..
T Consensus 250 ~~~~~~~~~~ 259 (306)
T COG0724 250 GDIVRASLPP 259 (306)
T ss_pred ccceeeeccC
Confidence 9886666544
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.03 E-value=0.22 Score=39.20 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=55.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-CeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
+..|+|-.+|-.++..||..++..+- .|..++++++ +-.+++.|.+.++|....+.+||..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78999999999999999999988654 6788888875 456999999999999999999999974
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.90 E-value=0.48 Score=27.89 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=34.2
Q ss_pred CCHHHHHHHhcccC-----CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 67 VTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 67 ~~~~~l~~~f~~~g-----~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
++..+|..++...+ .|-.+.+. ..|+||+-.. +.|..++..|++..+.|++++|+.|
T Consensus 13 ~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 13 LTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp --HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 67778888877654 45667776 5688888765 5788899999999999999999865
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.28 E-value=0.74 Score=26.63 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=43.1
Q ss_pred CCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 67 VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 67 ~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
++-.+++.-+..|+ ... +..++.--||.|.+..+|+++....+|..+.+..+.+
T Consensus 12 ~~v~d~K~~Lr~y~-~~~--I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYR-WDR--IRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCC-cce--EEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56688898999986 333 3445667789999999999999999999988777654
No 146
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.19 E-value=1.2 Score=33.35 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=40.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCC-eEEEEeeCCCCEEEEEeCCH
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANR 101 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~g~afv~f~~~ 101 (152)
...||++||+.++.-.+|+..+.+.+. -..+.+....|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 457999999999999999999988773 46777877789999999875
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=1.5 Score=35.92 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=59.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccc----CCeEEEEeeCC------------------------------------
Q 031850 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPVG------------------------------------ 90 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----g~v~~~~~~~~------------------------------------ 90 (152)
...+.+|-|.|+.|. +...+|.-+|+.| |.|..|.|..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999998 8889999888765 47888877530
Q ss_pred -----------------CCEEEEEeCCHHHHHHHHHHhCCCeeC--CeEeEEEec
Q 031850 91 -----------------KGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWG 126 (152)
Q Consensus 91 -----------------~g~afv~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 126 (152)
.-||.|+|.+.+.|........|..+. +..+.++|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 137999999999999999999999986 556666664
No 148
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.87 E-value=0.24 Score=34.44 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCe-EeEEEecCCc
Q 031850 56 TTIFVGGLDPNVTD-----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRNP 129 (152)
Q Consensus 56 ~~l~v~nl~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 129 (152)
.++.+.+++..+-. .....+|.+|.+.....+.+..+...|.|.+.+.|..|...+++..+.|. .++..++.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 44566666665222 23456677777766667777778889999999999999999999999888 8998888755
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 149
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=91.58 E-value=0.053 Score=29.86 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=16.2
Q ss_pred ccccCcccCCcceEEeec
Q 031850 2 TEMNGVYCSSRPMRIGAA 19 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a 19 (152)
+.|||..+.|++|+|.+|
T Consensus 39 ~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 39 EQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHTTSEETTEEEEEEEE
T ss_pred HHhCCCEECCcEEEEEEC
Confidence 468999999999999985
No 150
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=90.45 E-value=0.62 Score=31.22 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.8
Q ss_pred CccccCcccCCcceEEeecCCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
|+.||+.+|.|++|+|+++..+...
T Consensus 93 l~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 93 ISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred HHHcCCCEECCEEEEEEeCCcCCCC
Confidence 3579999999999999999876543
No 151
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.18 Score=36.19 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred CccccCcccCCcceEEeecCCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
|+.||+.+|.||.|+|++|.+.+..
T Consensus 69 iDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 69 IDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred hhcCchhhhcceeEEEeecCCcccc
Confidence 5789999999999999999986543
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.74 E-value=0.17 Score=39.23 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=57.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
..+++|++|+..+...++-++|..+|.|....+-. ...+|.+.|..-.....|+. ++|..+.-+...+..-+|..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCccc
Confidence 46899999999999999999999999998877744 25678899988888888886 57777764444444444443
No 153
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=80.67 E-value=1.3 Score=31.57 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CccccCcccCCcceEEeecCCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
|+.|+|.+|+||.|+|+.|......
T Consensus 72 ~damDG~~ldgRelrVq~arygr~~ 96 (256)
T KOG4207|consen 72 LDAMDGAVLDGRELRVQMARYGRPS 96 (256)
T ss_pred HHhhcceeeccceeeehhhhcCCCc
Confidence 4789999999999999999877653
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=76.36 E-value=2.7 Score=31.57 Aligned_cols=75 Identities=23% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...+++|++++.+.+.+.+...++..+|.+....+.. .++++++.|...+.+..++.......+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3467899999999999887778888888655544322 3799999999999999999744334555665554444
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.11 E-value=13 Score=29.35 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=44.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC-CeEEEEeeCCCCEEEEEeCCHHHHHHHHH
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALH 109 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~g~afv~f~~~~~a~~a~~ 109 (152)
-.+-|-|.++|...-.++|...|..|+ .--.|.|+- ..++|..|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cceeEEeecchHHHHHHhh
Confidence 346788899999988889999999987 445555554 4689999999999999986
No 156
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.15 E-value=16 Score=27.52 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=55.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCC-------------CEEEEEeCCHHHHHHHHH----HhC--
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-------------GCGFVQFANRENAEEALH----KLN-- 112 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------------g~afv~f~~~~~a~~a~~----~l~-- 112 (152)
.-.++.|.+.|+...++-..+...|.+||+|+.+.++.+. ....+.|-+.+.+-.... .|.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999987643 678899998877554322 121
Q ss_pred CCeeCCeEeEEEecC
Q 031850 113 GTVIGKQSVRLSWGR 127 (152)
Q Consensus 113 g~~~~g~~l~v~~a~ 127 (152)
...+....|.+.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 122566667777665
No 157
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=69.35 E-value=3.3 Score=29.08 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.3
Q ss_pred CccccCcccCCcceEEeecCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~ 23 (152)
|+.|||..|.||.|+|+......
T Consensus 94 VDN~NGiki~gRtirVDHv~~Yk 116 (219)
T KOG0126|consen 94 VDNLNGIKILGRTIRVDHVSNYK 116 (219)
T ss_pred EeccCCceecceeEEeeeccccc
Confidence 46799999999999998866544
No 158
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=67.69 E-value=5.1 Score=31.99 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.4
Q ss_pred CccccCcccCCcceEEeecCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~ 24 (152)
|+.|||.++.||+++|.|+.....
T Consensus 77 ~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 77 IRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred HHhcCCcccCCceEEeecccccch
Confidence 467999999999999999886554
No 159
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=59.35 E-value=16 Score=28.52 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=46.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-CeEEEEeeC-C-------CCEEEEEeCCHHHHHHHHHHhCCCee
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV-G-------KGCGFVQFANRENAEEALHKLNGTVI 116 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~-~-------~g~afv~f~~~~~a~~a~~~l~g~~~ 116 (152)
-..+.|.+||...+..++.+-..++- .+.+..+.. + .+.+||.|...++.......++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46788999999999998887776654 333333331 1 47899999999998888888888875
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.41 E-value=22 Score=26.84 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=25.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 94 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 94 afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
|||+|++..+|+.+++.+....- +.+.++.|-.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 79999999999999986654443 44566666544
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.48 E-value=3.1 Score=33.97 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=52.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
..+++++.|+++.++-..|..++..+..+.++.+..+ ..+..|.|.-.-....|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3467899999999999999999998877776655432 356778888888888888889988765444
No 162
>PLN03213 repressor of silencing 3; Provisional
Probab=50.53 E-value=6.2 Score=32.02 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.4
Q ss_pred CccccCcccCCcceEEeecCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPR 22 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~ 22 (152)
|+.|||..+.||.|+|+.|.+.
T Consensus 67 ISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HHHhcCCeecCceeEEeeccHH
Confidence 4679999999999999998863
No 163
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=48.47 E-value=7.4 Score=29.83 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.5
Q ss_pred ccccCcccCCcceEEeecCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~ 23 (152)
++|+|..+.||+|.|+.+..+-
T Consensus 154 a~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 154 AELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHhhcceeeceEEEEeccchhh
Confidence 4799999999999999998764
No 164
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.65 E-value=65 Score=19.52 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-cC-CeEEEEeeC---CCCEEEEEeCCHHHHHHHHHH
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 110 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~---~~g~afv~f~~~~~a~~a~~~ 110 (152)
.-|.--++...+-.++++.++. || .|..+.... +..-|+|.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 4566667888899999988886 66 666665432 345799999998888776543
No 165
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=46.40 E-value=15 Score=22.56 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFS 77 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~ 77 (152)
...++|.|.|||...++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4568999999999999999887654
No 166
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.79 E-value=24 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=20.0
Q ss_pred CCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHH
Q 031850 67 VTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRE 102 (152)
Q Consensus 67 ~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~ 102 (152)
++.+.|.+.|+.|..+.-..+... .|++.|+|...-
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 455789999999987643333322 589999999853
No 167
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.04 E-value=32 Score=19.59 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=14.8
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031850 70 EDLRQPFSQYGEIASVKI 87 (152)
Q Consensus 70 ~~l~~~f~~~g~v~~~~~ 87 (152)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999998876654
No 168
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.59 E-value=74 Score=18.99 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=23.6
Q ss_pred CeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCe
Q 031850 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 115 (152)
Q Consensus 81 ~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~ 115 (152)
.|..+-.+.+ +||-||+=.+..+...|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3455444433 8999999999999999998776544
No 169
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.81 E-value=71 Score=26.05 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=43.6
Q ss_pred EEcCCCCCCC---HHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 031850 59 FVGGLDPNVT---DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (152)
Q Consensus 59 ~v~nl~~~~~---~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 121 (152)
.||||+.--. ...+.++=.+||+|-.+.+- ..-.|.-.+.+.|+.++.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG---~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG---SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec---CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4788776533 34555555689999877663 3467888899999999974 8888888875
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=39.35 E-value=1.1e+02 Score=20.07 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCCceEEEcCCCCC---CCHHHHHHHhcccC-CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPN---VTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~---~~~~~l~~~f~~~g-~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
++...|.|+..... .+-..+++.+..-| .++.+..- .+...|.|.+.++..+|.+.|....-.+-.|.+..+.
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 34556666665333 45577888888777 44554443 6688999999999999988776544445566555544
No 171
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.23 E-value=91 Score=18.52 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=38.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-cC-CeEEEEeeC---CCCEEEEEeCCHHHHHHHHH
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALH 109 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~---~~g~afv~f~~~~~a~~a~~ 109 (152)
.-|+-.++...+-.+++..++. |+ .|..+.... +..-|||.+.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4567778889999999988886 66 666664432 34579999988888777543
No 172
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=34.71 E-value=92 Score=17.92 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=36.4
Q ss_pred HHHHHHhcccC-CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 70 EDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 70 ~~l~~~f~~~g-~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
++|.+.|...| .|..+.-+.. -..-||+.....+. .+.++=..+.+..|+|+..+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCC
Confidence 46777777777 6777655442 24677777665442 23456677889998888765
No 173
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.47 E-value=36 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~ 85 (152)
....++|+-|+|..++++.|.++.++.|.+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 456799999999999999999999998865544
No 174
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.77 E-value=83 Score=17.03 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=36.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCH----HHHHHHHH
Q 031850 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR----ENAEEALH 109 (152)
Q Consensus 58 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~----~~a~~a~~ 109 (152)
+.|.|+.=.--...+++.+...-.|..+.+-...+-+-|.|... +...++++
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 45555554444567888888887899998887788888998865 34444444
No 175
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.02 E-value=1e+02 Score=17.75 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=30.3
Q ss_pred HHHHHHhcccCCeEEEEeeCC--CCEEEEEeCCHHHHHHHHHHh
Q 031850 70 EDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKL 111 (152)
Q Consensus 70 ~~l~~~f~~~g~v~~~~~~~~--~g~afv~f~~~~~a~~a~~~l 111 (152)
..+.+.+..+| +.-..+.-. .++.|+.+.+.+.+.++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35566667788 555566665 678999998999988887765
No 176
>PF15063 TC1: Thyroid cancer protein 1
Probab=32.11 E-value=26 Score=20.77 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
.++--+.||-.+++...|+.+|..-|..
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3455678999999999999999999863
No 177
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.15 E-value=89 Score=17.95 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.6
Q ss_pred CEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 92 GCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 92 g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
...++.|.+...|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46789999999999998877655543
No 178
>PLN03120 nucleic acid binding protein; Provisional
Probab=30.95 E-value=44 Score=24.85 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.0
Q ss_pred cccCcccCCcceEEeecCCCC
Q 031850 3 EMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~ 23 (152)
.|||..|.||+|+|.++....
T Consensus 61 lLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 61 LLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred HhcCCeeCCceEEEEeccCCC
Confidence 489999999999999987543
No 179
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=30.90 E-value=1.3e+02 Score=18.52 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHhcccC-CeEEEEeeCC--CCEEEEEeCCHHHHHHHHHHhC
Q 031850 63 LDPNVTDEDLRQPFSQYG-EIASVKIPVG--KGCGFVQFANRENAEEALHKLN 112 (152)
Q Consensus 63 l~~~~~~~~l~~~f~~~g-~v~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~ 112 (152)
+.+.++...+..-|...| .-....+.+| +.+|.|.|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 344556665554454444 2222233444 6799999999999999877653
No 180
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=30.89 E-value=70 Score=18.66 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHhcccC-CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 70 EDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 70 ~~l~~~f~~~g-~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.+|.+.|...| ++..+..+.. -.+-+|+.....+... .|+-..++|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 45777888888 7777765542 1355666655433332 466677889998887643
No 181
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=29.09 E-value=22 Score=27.47 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.0
Q ss_pred HHHHHHhcccCCeEEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCC
Q 031850 70 EDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGT 114 (152)
Q Consensus 70 ~~l~~~f~~~g~v~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~ 114 (152)
..+.+++.+.|.|..-.+.+ +-|.+|+..-..+++.++++.|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 45666667777666554443 4689999999999999999988765
No 182
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.94 E-value=67 Score=24.26 Aligned_cols=75 Identities=29% Similarity=0.620 Sum_probs=47.1
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHhcccCCeEEEEeeC-C---------------CCEE---------EEE
Q 031850 55 NTTIFVGGLDPN------------VTDEDLRQPFSQYGEIASVKIPV-G---------------KGCG---------FVQ 97 (152)
Q Consensus 55 ~~~l~v~nl~~~------------~~~~~l~~~f~~~g~v~~~~~~~-~---------------~g~a---------fv~ 97 (152)
..+||+.+||-. .+++.|...|..||.|..|.++. + .||+ ||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457788777642 46778999999999998887752 1 2332 233
Q ss_pred eCCHHHHHHHHHHhCCCee----CCe----EeEEEecCCc
Q 031850 98 FANRENAEEALHKLNGTVI----GKQ----SVRLSWGRNP 129 (152)
Q Consensus 98 f~~~~~a~~a~~~l~g~~~----~g~----~l~v~~a~~~ 129 (152)
|-...--..|+.+|.|..+ .|. .++|.|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 4334444556666766664 232 4677776654
No 183
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.43 E-value=45 Score=16.78 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=9.7
Q ss_pred CCCHHHHHHHhcccC
Q 031850 66 NVTDEDLRQPFSQYG 80 (152)
Q Consensus 66 ~~~~~~l~~~f~~~g 80 (152)
.++++.|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578899999998764
No 184
>PRK11901 hypothetical protein; Reviewed
Probab=24.99 E-value=3.3e+02 Score=21.11 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC----CC-CE--EEEEeCCHHHHHHHHHHhCC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GK-GC--GFVQFANRENAEEALHKLNG 113 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~----~~-g~--afv~f~~~~~a~~a~~~l~g 113 (152)
+....+|-|..+. +++.|..+..+++ +..+.+.. ++ +| .+-.|.+.++|..|+..|..
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3455677777654 4677777776665 22233322 22 33 33479999999999998864
No 185
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=24.96 E-value=1.2e+02 Score=24.32 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=29.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccc----CCeEEEEeeC
Q 031850 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPV 89 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----g~v~~~~~~~ 89 (152)
..++..|-|-|+.|. +...+|..+|+.| |.+.+|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 345678999999998 7778898888755 4777777753
No 186
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.88 E-value=2e+02 Score=24.20 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV 89 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~ 89 (152)
..-....+|+.+|+.+..++.-.++....-.++.+.+.+
T Consensus 297 EGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 297 EGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred CCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec
Confidence 334567899999999998887777877777777777764
No 187
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.59 E-value=1.1e+02 Score=21.57 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCHHHHHHHhc-ccCCeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHH
Q 031850 67 VTDEDLRQPFS-QYGEIASVKIPVG-------KGCGFVQFANRENAEEALHK 110 (152)
Q Consensus 67 ~~~~~l~~~f~-~~g~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~ 110 (152)
.+++.|.++.. .-|.+..+.+.+. +|-.||.|.+.+.|...++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 44444443332 1278888876542 58899999999999887653
No 188
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=1.3e+02 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=21.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
.....|+|||+.++..-+..++...-.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~ 121 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFI 121 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCc
Confidence 456779999999999999888876443
No 189
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=22.70 E-value=1.9e+02 Score=17.51 Aligned_cols=7 Identities=0% Similarity=0.396 Sum_probs=4.3
Q ss_pred ceEEEcC
Q 031850 56 TTIFVGG 62 (152)
Q Consensus 56 ~~l~v~n 62 (152)
--+||.|
T Consensus 47 lflyvnn 53 (87)
T cd01612 47 LFLYINN 53 (87)
T ss_pred EEEEECC
Confidence 4566766
No 190
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=2.6e+02 Score=18.45 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCeEEEEeeCCCCE-EEEEeCC--------HHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 80 GEIASVKIPVGKGC-GFVQFAN--------RENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 80 g~v~~~~~~~~~g~-afv~f~~--------~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
|.+..-++..-..| |||+++. .+-|.-.+..+|...--|..+.|+
T Consensus 6 G~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vK 59 (129)
T COG1098 6 GSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVK 59 (129)
T ss_pred cceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEE
Confidence 44444444332333 7887777 366666676666554445554443
No 191
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.60 E-value=1.8e+02 Score=16.56 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=33.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCH
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR 101 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~ 101 (152)
++.|.++.=.--...+.+.+.....+..+.+....+-+.|.|++.
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 455555544433467788888888899998888888899999983
No 192
>PRK10905 cell division protein DamX; Validated
Probab=20.17 E-value=3.3e+02 Score=21.06 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=35.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCC---eEEEEeeCCC-CE--EEEEeCCHHHHHHHHHHhCC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVGK-GC--GFVQFANRENAEEALHKLNG 113 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~-g~--afv~f~~~~~a~~a~~~l~g 113 (152)
....+|-|+.+. +.+.|+.+-.+.|- ........++ .| .+-.|.+.++|++|+..|..
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 345677777666 45667776666642 1111122222 22 33479999999999998864
Done!