Query 031850
Match_columns 152
No_of_seqs 155 out of 1573
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i2y_A Fusion protein consists 99.9 1.7E-22 5.7E-27 135.9 8.4 117 2-130 31-149 (150)
2 4fxv_A ELAV-like protein 1; RN 99.9 7.3E-22 2.5E-26 124.1 10.2 76 53-128 17-98 (99)
3 1sjq_A Polypyrimidine tract-bi 99.9 8.8E-22 3E-26 124.5 10.5 81 52-132 13-95 (105)
4 2cq1_A PTB-like protein L; RRM 99.9 5.9E-21 2E-25 120.3 14.2 82 51-132 11-94 (101)
5 3r27_A HnRNP L, heterogeneous 99.9 3E-21 1E-25 120.9 11.2 79 51-129 17-97 (100)
6 2cq3_A RNA-binding protein 9; 99.9 2.1E-20 7.1E-25 118.0 14.7 84 50-133 10-97 (103)
7 1wex_A Hypothetical protein (r 99.9 8.1E-21 2.8E-25 120.3 12.5 82 51-132 11-94 (104)
8 2yh0_A Splicing factor U2AF 65 99.9 9.7E-21 3.3E-25 131.8 14.1 122 3-131 69-196 (198)
9 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.3E-20 7.8E-25 117.8 13.9 83 50-132 10-96 (103)
10 1x4d_A Matrin 3; structural ge 99.9 5.8E-21 2E-25 120.4 11.0 78 53-130 13-93 (102)
11 1why_A Hypothetical protein ri 99.9 1.2E-20 4.1E-25 117.9 12.3 80 52-131 14-95 (97)
12 3md3_A Nuclear and cytoplasmic 99.9 5.1E-21 1.7E-25 129.6 11.3 102 2-128 59-166 (166)
13 1x4c_A Splicing factor, argini 99.9 3.1E-20 1.1E-24 118.3 14.2 81 52-133 12-97 (108)
14 2cpj_A Non-POU domain-containi 99.9 1.6E-20 5.6E-25 117.7 12.4 79 52-130 12-90 (99)
15 2cph_A RNA binding motif prote 99.9 2.1E-20 7.3E-25 118.6 12.8 84 50-133 10-101 (107)
16 2d9p_A Polyadenylate-binding p 99.9 1.5E-20 5.2E-25 118.6 11.8 83 51-133 11-97 (103)
17 1x4f_A Matrin 3; structural ge 99.9 1.1E-20 3.9E-25 120.8 11.2 81 52-132 22-105 (112)
18 2ad9_A Polypyrimidine tract-bi 99.8 8.5E-21 2.9E-25 122.6 10.5 82 52-133 28-111 (119)
19 1qm9_A Polypyrimidine tract-bi 99.8 2E-20 6.8E-25 130.6 13.1 128 2-129 59-197 (198)
20 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-20 5.3E-25 114.3 10.7 75 53-127 5-79 (89)
21 1x4a_A Splicing factor, argini 99.8 8.6E-20 3E-24 116.3 14.7 82 50-131 17-101 (109)
22 2ytc_A PRE-mRNA-splicing facto 99.8 1.4E-20 4.9E-25 114.7 10.4 78 50-127 7-85 (85)
23 2cpz_A CUG triplet repeat RNA- 99.8 5.3E-20 1.8E-24 118.4 13.5 83 50-132 20-108 (115)
24 2cq0_A Eukaryotic translation 99.8 2.9E-20 1E-24 117.3 12.0 83 51-133 11-99 (103)
25 1x4g_A Nucleolysin TIAR; struc 99.8 3.1E-20 1.1E-24 118.4 12.1 81 52-132 22-102 (109)
26 2adc_A Polypyrimidine tract-bi 99.8 3.2E-20 1.1E-24 132.7 13.5 128 2-129 90-228 (229)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.6E-20 8.8E-25 117.3 11.5 82 52-133 9-96 (102)
28 4f25_A Polyadenylate-binding p 99.8 1.2E-20 4.2E-25 121.5 10.0 79 54-132 4-86 (115)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-20 1.2E-24 117.3 12.0 82 52-133 12-101 (105)
30 1x5u_A Splicing factor 3B subu 99.8 4.4E-20 1.5E-24 116.8 12.1 83 50-132 10-98 (105)
31 1wf1_A RNA-binding protein RAL 99.8 3.8E-20 1.3E-24 118.2 11.8 77 53-131 25-102 (110)
32 3pgw_A U1-A; protein-RNA compl 99.8 5E-20 1.7E-24 135.0 14.0 75 53-127 205-281 (282)
33 2dgx_A KIAA0430 protein; RRM d 99.8 3.5E-20 1.2E-24 115.7 11.3 79 53-131 7-92 (96)
34 2dgt_A RNA-binding protein 30; 99.8 7.1E-20 2.4E-24 113.3 12.5 80 51-132 6-85 (92)
35 2do4_A Squamous cell carcinoma 99.8 6.6E-20 2.3E-24 115.1 12.5 80 52-131 14-98 (100)
36 1whw_A Hypothetical protein ri 99.8 6.6E-20 2.3E-24 114.8 12.2 81 52-132 5-91 (99)
37 2dgo_A Cytotoxic granule-assoc 99.8 9.3E-20 3.2E-24 117.2 13.2 83 50-132 10-98 (115)
38 2dgs_A DAZ-associated protein 99.8 8.5E-20 2.9E-24 114.4 12.6 81 52-133 7-93 (99)
39 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-19 4.9E-24 113.4 13.6 79 51-131 11-91 (99)
40 2g4b_A Splicing factor U2AF 65 99.8 2.7E-20 9.4E-25 126.9 10.9 98 3-127 69-172 (172)
41 1x4h_A RNA-binding protein 28; 99.8 1E-19 3.4E-24 116.2 12.9 84 50-133 10-105 (111)
42 2dnq_A RNA-binding protein 4B; 99.8 6.8E-20 2.3E-24 112.9 11.7 79 52-132 5-83 (90)
43 4f02_A Polyadenylate-binding p 99.8 2.7E-21 9.4E-26 136.8 6.0 105 2-131 75-183 (213)
44 2dnm_A SRP46 splicing factor; 99.8 5E-20 1.7E-24 116.2 11.2 83 50-132 8-96 (103)
45 1x5t_A Splicing factor 3B subu 99.8 4.2E-20 1.4E-24 115.1 10.4 82 53-134 3-91 (96)
46 2la4_A Nuclear and cytoplasmic 99.8 2.7E-20 9.1E-25 117.1 9.6 78 52-129 24-101 (101)
47 3md1_A Nuclear and cytoplasmic 99.8 4.9E-20 1.7E-24 111.8 10.4 76 55-130 1-82 (83)
48 3s8s_A Histone-lysine N-methyl 99.8 3.2E-20 1.1E-24 118.7 10.0 78 53-130 4-87 (110)
49 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-19 4.3E-24 112.5 12.5 77 51-127 12-94 (94)
50 2jvo_A Nucleolar protein 3; nu 99.8 5.2E-20 1.8E-24 117.3 10.9 80 50-131 26-105 (108)
51 2dnp_A RNA-binding protein 14; 99.8 9E-20 3.1E-24 112.4 11.6 79 52-132 6-84 (90)
52 2dgu_A Heterogeneous nuclear r 99.8 1.5E-19 5.1E-24 114.1 12.7 80 52-133 8-87 (103)
53 2xnq_A Nuclear polyadenylated 99.8 1.1E-19 3.8E-24 113.6 11.7 78 50-129 17-95 (97)
54 2err_A Ataxin-2-binding protei 99.8 6.1E-20 2.1E-24 117.2 10.6 80 50-129 24-107 (109)
55 2cpe_A RNA-binding protein EWS 99.8 1.3E-19 4.5E-24 116.1 12.2 83 50-132 10-106 (113)
56 1x5s_A Cold-inducible RNA-bind 99.8 7.6E-20 2.6E-24 115.1 10.9 81 52-132 9-95 (102)
57 1fje_B Nucleolin RBD12, protei 99.8 5.6E-20 1.9E-24 125.8 11.1 101 3-129 72-174 (175)
58 2dnz_A Probable RNA-binding pr 99.8 1.6E-19 5.5E-24 112.2 12.1 80 53-132 3-88 (95)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.5E-20 1.9E-24 112.5 9.7 77 53-129 4-86 (87)
60 2do0_A HnRNP M, heterogeneous 99.8 2.9E-19 9.9E-24 114.6 13.5 81 52-132 12-97 (114)
61 2lxi_A RNA-binding protein 10; 99.8 1.4E-20 4.7E-25 116.5 6.9 78 55-132 1-86 (91)
62 4a8x_A RNA-binding protein wit 99.8 9.9E-20 3.4E-24 111.5 10.7 77 54-130 3-86 (88)
63 2cqc_A Arginine/serine-rich sp 99.8 1.1E-19 3.6E-24 113.0 11.0 79 50-128 10-94 (95)
64 1oo0_B CG8781-PA, drosophila Y 99.8 9.2E-20 3.1E-24 116.3 10.7 80 51-130 22-107 (110)
65 1b7f_A Protein (SXL-lethal pro 99.8 5.2E-20 1.8E-24 125.0 10.1 98 2-126 63-168 (168)
66 1x5p_A Negative elongation fac 99.8 4.8E-19 1.7E-23 110.6 13.8 79 52-132 12-90 (97)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4.1E-24 110.5 10.6 75 53-127 5-85 (85)
68 1p27_B RNA-binding protein 8A; 99.8 4.9E-20 1.7E-24 116.8 9.2 79 52-130 20-104 (106)
69 2x1f_A MRNA 3'-END-processing 99.8 1.4E-19 4.7E-24 112.8 11.1 79 54-132 1-85 (96)
70 2cpf_A RNA binding motif prote 99.8 1E-19 3.5E-24 113.8 10.5 80 53-132 3-91 (98)
71 2cqh_A IGF-II mRNA-binding pro 99.8 4.4E-20 1.5E-24 114.4 8.7 80 53-133 6-87 (93)
72 2kxn_B Transformer-2 protein h 99.8 7.2E-20 2.5E-24 120.2 10.2 81 50-130 41-127 (129)
73 2khc_A Testis-specific RNP-typ 99.8 2.3E-19 8E-24 115.8 12.4 78 50-127 35-118 (118)
74 2qfj_A FBP-interacting repress 99.8 7.1E-21 2.4E-25 134.2 5.6 116 2-133 88-209 (216)
75 1wi8_A EIF-4B, eukaryotic tran 99.8 3E-19 1E-23 112.9 12.5 78 53-132 13-97 (104)
76 2e5j_A Methenyltetrahydrofolat 99.8 2.8E-19 9.6E-24 111.7 12.0 78 52-130 16-95 (97)
77 2lkz_A RNA-binding protein 5; 99.8 7.8E-20 2.7E-24 113.9 9.2 77 52-128 6-94 (95)
78 2cq4_A RNA binding motif prote 99.8 5.4E-20 1.8E-24 118.1 8.5 80 53-133 23-108 (114)
79 1u6f_A Tcubp1, RNA-binding pro 99.8 7.7E-19 2.6E-23 116.4 14.4 86 50-135 37-128 (139)
80 2fy1_A RNA-binding motif prote 99.8 2.3E-19 7.9E-24 115.7 11.5 80 53-132 5-89 (116)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 2E-19 7E-24 113.9 11.0 82 51-132 9-99 (106)
82 3smz_A Protein raver-1, ribonu 99.8 6.6E-20 2.3E-24 134.5 9.9 107 2-132 155-267 (284)
83 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5.1E-24 113.3 10.0 79 49-127 7-99 (99)
84 2ywk_A Putative RNA-binding pr 99.8 1.3E-19 4.5E-24 112.6 9.7 78 51-128 12-94 (95)
85 2cqd_A RNA-binding region cont 99.8 7E-19 2.4E-23 113.2 13.3 81 49-130 11-97 (116)
86 2cq2_A Hypothetical protein LO 99.8 1.8E-19 6.2E-24 115.4 10.3 81 53-133 23-110 (114)
87 2jrs_A RNA-binding protein 39; 99.8 1.5E-19 5E-24 115.2 9.8 81 50-130 21-107 (108)
88 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-19 4.2E-24 112.1 9.1 80 52-131 5-88 (92)
89 1nu4_A U1A RNA binding domain; 99.8 9.1E-20 3.1E-24 113.7 8.6 81 52-132 5-92 (97)
90 3ex7_B RNA-binding protein 8A; 99.8 1.3E-19 4.3E-24 118.3 9.6 82 51-132 18-105 (126)
91 3tyt_A Heterogeneous nuclear r 99.8 4.6E-20 1.6E-24 130.0 8.0 126 1-126 59-204 (205)
92 2dng_A Eukaryotic translation 99.8 5.6E-19 1.9E-23 111.4 12.2 79 52-132 12-96 (103)
93 2e5i_A Heterogeneous nuclear r 99.8 1.3E-18 4.5E-23 113.2 14.2 78 54-131 24-104 (124)
94 1whx_A Hypothetical protein ri 99.8 8.6E-20 2.9E-24 116.9 8.5 76 54-129 9-84 (111)
95 2kt5_A RNA and export factor-b 99.8 1.1E-18 3.8E-23 113.6 14.0 80 52-131 32-116 (124)
96 2hvz_A Splicing factor, argini 99.8 1.5E-19 5.2E-24 113.6 9.2 77 56-132 1-78 (101)
97 2a3j_A U1 small nuclear ribonu 99.8 1.4E-19 4.6E-24 118.5 9.3 82 52-133 26-114 (127)
98 2kvi_A Nuclear polyadenylated 99.8 1.3E-19 4.5E-24 113.0 8.5 79 52-132 7-86 (96)
99 1fxl_A Paraneoplastic encephal 99.8 1.1E-19 3.8E-24 123.0 8.7 98 2-126 62-167 (167)
100 2jvr_A Nucleolar protein 3; RN 99.8 1.9E-19 6.5E-24 115.1 9.2 79 52-130 25-106 (111)
101 2fc9_A NCL protein; structure 99.8 1.1E-18 3.9E-23 109.6 12.3 81 51-131 11-93 (101)
102 2div_A TRNA selenocysteine ass 99.8 3.3E-19 1.1E-23 111.6 9.4 79 52-130 6-95 (99)
103 2cpi_A CCR4-NOT transcription 99.8 9.1E-19 3.1E-23 112.0 11.7 78 53-130 13-102 (111)
104 2dhg_A TRNA selenocysteine ass 99.8 2.7E-19 9.4E-24 112.9 9.2 81 52-132 6-93 (104)
105 2jwn_A Embryonic polyadenylate 99.8 3.6E-20 1.2E-24 120.6 5.2 79 54-133 35-119 (124)
106 2ghp_A U4/U6 snRNA-associated 99.8 2E-19 6.9E-24 132.4 9.8 107 2-129 177-291 (292)
107 1l3k_A Heterogeneous nuclear r 99.8 5E-19 1.7E-23 123.0 10.9 108 4-133 74-187 (196)
108 3ulh_A THO complex subunit 4; 99.8 6.9E-19 2.4E-23 111.6 10.5 77 51-127 25-106 (107)
109 2m2b_A RNA-binding protein 10; 99.8 3.8E-19 1.3E-23 116.9 9.5 81 50-131 18-110 (131)
110 1x5o_A RNA binding motif, sing 99.8 1.8E-18 6.2E-23 110.9 12.5 78 52-129 22-112 (114)
111 2lea_A Serine/arginine-rich sp 99.8 1.7E-19 5.8E-24 119.3 7.8 84 49-132 41-130 (135)
112 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-18 5.4E-23 114.8 12.5 77 50-126 58-140 (140)
113 2cpx_A Hypothetical protein FL 99.8 1.7E-18 5.7E-23 111.2 12.2 82 52-133 22-109 (115)
114 2dh8_A DAZ-associated protein 99.8 5.4E-19 1.8E-23 111.8 9.6 81 51-132 12-98 (105)
115 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-18 4.4E-23 117.6 12.0 81 52-132 67-153 (158)
116 2cqp_A RNA-binding protein 12; 99.8 3.3E-19 1.1E-23 111.4 8.4 77 53-129 13-95 (98)
117 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.7E-19 1.9E-23 120.4 10.0 82 51-132 68-155 (165)
118 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.6E-19 8.9E-24 112.5 7.6 79 50-130 14-99 (100)
119 2dgw_A Probable RNA-binding pr 99.8 1.3E-18 4.3E-23 107.4 10.5 77 52-130 7-88 (91)
120 2dis_A Unnamed protein product 99.8 1.1E-18 3.7E-23 111.1 10.5 79 53-131 6-94 (109)
121 1x4b_A Heterogeneous nuclear r 99.8 1.3E-18 4.6E-23 111.9 10.8 79 53-132 25-109 (116)
122 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 107.1 9.8 74 55-129 6-85 (89)
123 3p5t_L Cleavage and polyadenyl 99.8 7.6E-20 2.6E-24 112.8 4.6 77 56-132 2-86 (90)
124 1p1t_A Cleavage stimulation fa 99.8 1E-19 3.5E-24 114.9 5.1 80 53-132 6-91 (104)
125 2cqg_A TDP-43, TAR DNA-binding 99.8 4.2E-18 1.4E-22 107.3 12.5 80 51-132 11-96 (103)
126 2fc8_A NCL protein; structure 99.8 3E-18 1E-22 107.7 11.7 82 51-132 11-95 (102)
127 3lqv_A PRE-mRNA branch site pr 99.8 9.8E-19 3.4E-23 112.3 9.5 78 53-130 6-86 (115)
128 3beg_B Splicing factor, argini 99.8 7.7E-19 2.6E-23 113.1 8.8 79 53-132 14-97 (115)
129 1wg1_A KIAA1579 protein, homol 99.8 1.7E-18 5.9E-23 106.2 9.9 77 53-130 3-79 (88)
130 2bz2_A Negative elongation fac 99.8 1.5E-18 5E-23 112.8 9.9 79 52-132 36-114 (121)
131 3zzy_A Polypyrimidine tract-bi 99.8 2.5E-18 8.5E-23 112.4 10.9 80 52-131 25-108 (130)
132 3ns6_A Eukaryotic translation 99.8 2E-19 6.8E-24 113.1 5.4 78 53-130 4-94 (100)
133 1h2v_Z 20 kDa nuclear CAP bind 99.8 3E-18 1E-22 115.7 11.4 79 53-131 37-121 (156)
134 2e44_A Insulin-like growth fac 99.8 2.6E-18 8.8E-23 106.9 10.3 77 53-129 13-92 (96)
135 2nlw_A Eukaryotic translation 99.8 2.5E-18 8.4E-23 108.9 10.2 78 52-129 12-100 (105)
136 1wg5_A Heterogeneous nuclear r 99.8 6.1E-18 2.1E-22 106.9 11.3 78 52-130 12-95 (104)
137 2diu_A KIAA0430 protein; struc 99.8 4.6E-18 1.6E-22 104.3 10.2 77 53-133 6-88 (96)
138 2rs2_A Musashi-1, RNA-binding 99.8 3.4E-18 1.2E-22 109.0 10.1 79 51-130 21-105 (109)
139 1s79_A Lupus LA protein; RRM, 99.8 1.7E-18 5.8E-23 109.4 8.5 75 53-128 9-88 (103)
140 1x4e_A RNA binding motif, sing 99.8 5.3E-19 1.8E-23 107.7 5.9 75 53-127 3-83 (85)
141 3nmr_A Cugbp ELAV-like family 99.8 1.6E-18 5.4E-23 118.2 8.9 100 2-127 65-175 (175)
142 3n9u_C Cleavage and polyadenyl 99.8 1.5E-18 5.1E-23 117.4 8.6 77 54-130 54-138 (156)
143 2e5g_A U6 snRNA-specific termi 99.8 7.8E-18 2.7E-22 104.5 11.2 79 53-132 6-85 (94)
144 1sjr_A Polypyrimidine tract-bi 99.8 3.6E-18 1.2E-22 115.7 10.2 79 52-130 43-125 (164)
145 3s7r_A Heterogeneous nuclear r 99.8 4.1E-18 1.4E-22 104.1 9.6 74 52-126 8-87 (87)
146 2ek1_A RNA-binding protein 12; 99.8 7.3E-19 2.5E-23 109.2 6.1 76 53-128 13-94 (95)
147 2cpy_A RNA-binding protein 12; 99.8 2.6E-18 8.8E-23 110.4 8.7 78 52-130 12-95 (114)
148 1fjc_A Nucleolin RBD2, protein 99.8 3.5E-18 1.2E-22 106.3 9.1 79 52-131 13-93 (96)
149 2db1_A Heterogeneous nuclear r 99.8 4.3E-18 1.5E-22 110.0 8.8 77 52-129 14-98 (118)
150 2hzc_A Splicing factor U2AF 65 99.8 7.1E-18 2.4E-22 103.0 9.1 72 53-125 4-86 (87)
151 1fj7_A Nucleolin RBD1, protein 99.8 1.2E-17 4.1E-22 104.8 10.3 79 52-131 14-97 (101)
152 3u1l_A PRE-mRNA-splicing facto 99.7 2.4E-18 8.2E-23 123.4 7.8 81 52-132 131-232 (240)
153 3tyt_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 117.4 11.4 76 54-129 3-80 (205)
154 3d2w_A TAR DNA-binding protein 99.7 1.4E-17 4.9E-22 102.4 10.1 76 52-131 8-86 (89)
155 1wez_A HnRNP H', FTP-3, hetero 99.7 9.9E-18 3.4E-22 105.7 9.5 79 52-132 12-95 (102)
156 2cjk_A Nuclear polyadenylated 99.7 5.8E-19 2E-23 119.7 4.0 96 6-129 65-166 (167)
157 1wel_A RNA-binding protein 12; 99.7 1.7E-18 5.7E-23 112.8 6.0 77 53-130 23-105 (124)
158 2mss_A Protein (musashi1); RNA 99.7 2.8E-18 9.5E-23 102.1 6.1 69 57-126 1-75 (75)
159 2ki2_A SS-DNA binding protein 99.7 8.7E-19 3E-23 107.8 3.6 74 56-130 2-81 (90)
160 2hgl_A HNRPF protein, heteroge 99.7 3.3E-18 1.1E-22 113.1 6.5 79 50-129 39-125 (136)
161 3egn_A RNA-binding protein 40; 99.7 6.5E-18 2.2E-22 112.5 7.6 81 52-132 42-133 (143)
162 2dnn_A RNA-binding protein 12; 99.7 2.5E-17 8.7E-22 104.9 9.6 76 53-130 14-94 (109)
163 2krb_A Eukaryotic translation 99.7 4.5E-18 1.5E-22 102.7 5.7 69 55-123 1-80 (81)
164 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.6E-18 2.3E-22 100.8 6.4 70 56-126 1-76 (77)
165 2lmi_A GRSF-1, G-rich sequence 99.7 5.2E-18 1.8E-22 107.8 5.8 78 52-130 8-93 (107)
166 4f02_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 115.8 10.4 78 53-130 13-96 (213)
167 3smz_A Protein raver-1, ribonu 99.7 3.4E-17 1.2E-21 120.0 10.5 96 2-130 75-176 (284)
168 1wf0_A TDP-43, TAR DNA-binding 99.7 2.1E-17 7.3E-22 101.2 7.6 78 53-132 3-81 (88)
169 2f3j_A RNA and export factor b 99.7 4E-17 1.4E-21 112.5 9.6 78 53-130 86-168 (177)
170 3q2s_C Cleavage and polyadenyl 99.7 8.8E-18 3E-22 120.2 6.5 76 54-129 67-150 (229)
171 3sde_A Paraspeckle component 1 99.7 3E-17 1E-21 119.4 8.9 96 2-130 76-180 (261)
172 2lcw_A RNA-binding protein FUS 99.5 6.6E-19 2.3E-23 113.4 0.0 81 52-132 4-98 (116)
173 1fxl_A Paraneoplastic encephal 99.7 1.4E-16 4.8E-21 107.6 11.4 77 55-131 2-84 (167)
174 3pgw_S U1-70K; protein-RNA com 99.7 1.2E-16 4.3E-21 123.8 12.0 79 53-131 100-184 (437)
175 2ghp_A U4/U6 snRNA-associated 99.7 1.3E-16 4.5E-21 117.3 11.4 96 3-132 99-200 (292)
176 3sde_A Paraspeckle component 1 99.7 2.4E-16 8.2E-21 114.6 12.3 78 52-129 19-96 (261)
177 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6.1E-22 98.5 5.1 69 57-126 1-75 (75)
178 2xs2_A Deleted in azoospermia- 99.7 1.7E-17 5.9E-22 104.3 5.0 77 52-130 6-87 (102)
179 1b7f_A Protein (SXL-lethal pro 99.7 2.1E-16 7E-21 107.1 10.4 78 54-131 2-85 (168)
180 2hgn_A Heterogeneous nuclear r 99.7 1.5E-17 5.2E-22 110.3 4.6 78 52-131 43-125 (139)
181 2adc_A Polypyrimidine tract-bi 99.7 1.8E-16 6.1E-21 113.2 10.5 78 52-129 31-110 (229)
182 2dit_A HIV TAT specific factor 99.7 1.2E-15 4.1E-20 97.6 12.9 81 52-132 12-105 (112)
183 2hgm_A HNRPF protein, heteroge 99.7 7.5E-17 2.6E-21 105.2 7.3 76 52-129 39-121 (126)
184 3md3_A Nuclear and cytoplasmic 99.7 5.8E-16 2E-20 104.5 10.6 76 56-131 1-81 (166)
185 3pgw_A U1-A; protein-RNA compl 99.7 8.5E-16 2.9E-20 112.5 11.4 80 51-130 5-91 (282)
186 2dnl_A Cytoplasmic polyadenyla 99.7 4E-16 1.4E-20 100.1 8.4 84 53-139 6-98 (114)
187 1l3k_A Heterogeneous nuclear r 99.7 6E-16 2E-20 107.3 9.6 80 50-130 8-93 (196)
188 2pe8_A Splicing factor 45; RRM 99.6 1.6E-15 5.4E-20 96.0 10.1 77 53-129 6-94 (105)
189 1qm9_A Polypyrimidine tract-bi 99.6 6.6E-16 2.3E-20 107.6 9.0 77 54-130 2-80 (198)
190 2dha_A FLJ20171 protein; RRM d 99.6 1E-16 3.5E-21 104.2 4.5 76 53-129 21-105 (123)
191 2g4b_A Splicing factor U2AF 65 99.6 1.7E-15 5.9E-20 102.9 10.1 76 54-130 3-89 (172)
192 2qfj_A FBP-interacting repress 99.6 2.1E-15 7.3E-20 106.0 10.2 77 54-130 27-109 (216)
193 2yh0_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 103.5 10.5 75 54-129 3-88 (198)
194 2voo_A Lupus LA protein; RNA-b 99.6 3.7E-15 1.3E-19 104.0 9.4 75 54-129 108-187 (193)
195 2j8a_A Histone-lysine N-methyl 99.6 2E-15 6.8E-20 97.7 6.6 74 56-129 3-96 (136)
196 3nmr_A Cugbp ELAV-like family 99.6 3.8E-15 1.3E-19 101.3 8.2 77 54-130 2-89 (175)
197 3tht_A Alkylated DNA repair pr 99.6 9.1E-15 3.1E-19 109.8 9.8 76 52-127 15-97 (345)
198 1fje_B Nucleolin RBD12, protei 99.6 1.7E-14 5.9E-19 98.3 10.3 80 51-131 9-93 (175)
199 2cjk_A Nuclear polyadenylated 99.6 1E-14 3.5E-19 98.6 8.6 75 54-130 2-82 (167)
200 3v4m_A Splicing factor U2AF 65 99.6 3.2E-14 1.1E-18 90.0 9.6 77 53-129 3-97 (105)
201 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.6E-13 1.6E-17 83.8 12.0 66 65-132 27-93 (100)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.2E-13 4.2E-18 88.9 8.7 75 54-128 19-108 (118)
203 1jmt_A Splicing factor U2AF 35 99.5 1.2E-14 3.9E-19 91.8 3.8 67 60-126 20-103 (104)
204 3s6e_A RNA-binding protein 39; 99.5 3.5E-13 1.2E-17 86.3 10.4 77 53-129 5-93 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 2.3E-12 7.9E-17 78.3 8.5 74 53-129 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 4.2E-12 1.4E-16 81.7 9.3 77 51-127 14-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 4.3E-11 1.5E-15 73.1 7.4 74 52-128 12-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 6.3E-10 2.1E-14 78.7 6.9 62 67-128 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 1.6E-08 5.5E-13 63.1 9.3 72 54-125 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.7 3.6E-07 1.2E-11 56.6 9.5 76 55-130 5-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 9.4E-05 3.2E-09 45.6 10.4 74 53-129 6-84 (104)
212 4f25_A Polyadenylate-binding p 97.9 2.4E-06 8.4E-11 54.1 0.6 52 1-71 62-113 (115)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.00028 9.7E-09 42.7 7.2 72 56-127 2-86 (91)
214 1wwh_A Nucleoporin 35, nucleop 97.6 0.00049 1.7E-08 43.7 8.5 75 53-129 22-97 (119)
215 1whv_A Poly(A)-specific ribonu 97.6 0.00028 9.5E-09 43.1 7.0 57 53-112 14-70 (100)
216 3ctr_A Poly(A)-specific ribonu 97.2 0.00076 2.6E-08 41.3 5.2 54 56-112 7-60 (101)
217 2l08_A Regulator of nonsense t 97.0 0.0028 9.7E-08 38.7 6.7 74 54-127 8-94 (97)
218 3p3d_A Nucleoporin 53; structu 96.9 0.00089 3E-08 43.1 4.0 73 55-129 7-99 (132)
219 3pq1_A Poly(A) RNA polymerase; 96.9 0.00065 2.2E-08 52.9 3.7 54 55-109 53-107 (464)
220 2hvz_A Splicing factor, argini 96.8 0.00035 1.2E-08 42.7 1.4 23 2-24 55-77 (101)
221 2i2y_A Fusion protein consists 95.8 0.0028 9.6E-08 41.5 1.4 38 91-129 13-51 (150)
222 2diu_A KIAA0430 protein; struc 95.1 0.0051 1.8E-07 37.4 0.6 26 1-26 63-88 (96)
223 3lqv_A PRE-mRNA branch site pr 94.7 0.0014 4.8E-08 40.9 -2.7 44 2-80 65-108 (115)
224 2dgu_A Heterogeneous nuclear r 94.5 0.03 1E-06 34.0 3.0 24 2-25 63-86 (103)
225 2dgo_A Cytotoxic granule-assoc 94.1 0.042 1.4E-06 33.9 3.2 24 2-25 75-98 (115)
226 2kn4_A Immunoglobulin G-bindin 93.5 0.036 1.2E-06 36.3 2.1 26 90-115 12-37 (158)
227 2dnz_A Probable RNA-binding pr 93.4 0.037 1.3E-06 32.9 1.9 24 2-25 65-88 (95)
228 1whw_A Hypothetical protein ri 93.3 0.042 1.4E-06 32.9 2.1 24 2-25 68-91 (99)
229 2dnq_A RNA-binding protein 4B; 93.3 0.038 1.3E-06 32.6 1.8 24 2-25 60-83 (90)
230 1x5t_A Splicing factor 3B subu 93.2 0.045 1.6E-06 32.5 2.1 24 2-25 66-89 (96)
231 2fy1_A RNA-binding motif prote 93.2 0.071 2.4E-06 33.2 3.1 24 2-25 66-89 (116)
232 2dgt_A RNA-binding protein 30; 92.9 0.04 1.4E-06 32.6 1.5 24 2-25 62-85 (92)
233 2dnp_A RNA-binding protein 14; 92.7 0.041 1.4E-06 32.4 1.4 24 2-25 61-84 (90)
234 2cqh_A IGF-II mRNA-binding pro 92.6 0.046 1.6E-06 32.4 1.5 24 2-25 62-86 (93)
235 2dhg_A TRNA selenocysteine ass 92.1 0.064 2.2E-06 32.4 1.7 24 2-25 69-93 (104)
236 1x4c_A Splicing factor, argini 91.5 0.1 3.5E-06 31.9 2.2 25 1-25 67-96 (108)
237 2do0_A HnRNP M, heterogeneous 91.3 0.16 5.4E-06 31.1 2.9 24 2-25 74-97 (114)
238 3d45_A Poly(A)-specific ribonu 91.0 1.3 4.6E-05 34.8 8.6 55 55-112 440-494 (507)
239 2ki2_A SS-DNA binding protein 90.9 0.054 1.9E-06 31.8 0.5 25 1-25 59-83 (90)
240 2kvi_A Nuclear polyadenylated 90.7 0.051 1.8E-06 32.5 0.2 23 2-24 63-85 (96)
241 2x1f_A MRNA 3'-END-processing 90.1 0.066 2.3E-06 31.9 0.3 24 2-25 62-85 (96)
242 1p1t_A Cleavage stimulation fa 89.7 0.11 3.9E-06 31.2 1.2 24 2-25 68-91 (104)
243 3ex7_B RNA-binding protein 8A; 89.6 0.084 2.9E-06 33.1 0.5 24 2-25 82-105 (126)
244 1wg1_A KIAA1579 protein, homol 89.3 0.15 5E-06 29.8 1.5 22 2-23 58-79 (88)
245 2e5g_A U6 snRNA-specific termi 89.3 0.16 5.6E-06 30.0 1.7 23 1-24 62-84 (94)
246 2lcw_A RNA-binding protein FUS 88.9 0.07 2.4E-06 33.0 0.0 25 1-25 74-98 (116)
247 2dis_A Unnamed protein product 89.2 0.45 1.5E-05 28.7 3.7 25 1-25 69-95 (109)
248 3s8s_A Histone-lysine N-methyl 89.1 0.085 2.9E-06 32.6 0.3 23 1-23 65-87 (110)
249 2cqd_A RNA-binding region cont 89.0 0.52 1.8E-05 28.9 3.9 22 1-23 76-97 (116)
250 2m2b_A RNA-binding protein 10; 88.7 0.29 9.8E-06 30.9 2.6 25 1-25 83-111 (131)
251 2wbr_A GW182, gawky, LD47780P; 88.4 0.079 2.7E-06 31.7 -0.2 19 1-19 60-78 (89)
252 3s6e_A RNA-binding protein 39; 87.7 0.1 3.5E-06 32.6 -0.0 22 1-22 72-93 (114)
253 1whx_A Hypothetical protein ri 87.4 0.21 7.1E-06 30.7 1.3 23 1-23 63-85 (111)
254 1sjr_A Polypyrimidine tract-bi 86.9 0.44 1.5E-05 31.8 2.7 23 1-23 101-125 (164)
255 1h2v_Z 20 kDa nuclear CAP bind 85.7 0.24 8.3E-06 32.2 1.0 24 2-25 99-122 (156)
256 2e5i_A Heterogeneous nuclear r 84.0 0.28 9.4E-06 31.1 0.6 24 1-24 79-104 (124)
257 1wex_A Hypothetical protein (r 83.7 0.44 1.5E-05 29.0 1.4 23 3-25 70-94 (104)
258 3zzy_A Polypyrimidine tract-bi 83.4 0.54 1.8E-05 30.1 1.8 24 1-24 83-108 (130)
259 3q2s_C Cleavage and polyadenyl 80.0 0.67 2.3E-05 32.4 1.4 21 1-21 129-149 (229)
260 2g0c_A ATP-dependent RNA helic 79.4 6.3 0.00022 22.1 6.3 58 67-127 13-75 (76)
261 3beg_B Splicing factor, argini 78.2 0.97 3.3E-05 27.8 1.6 23 1-23 68-95 (115)
262 3pgw_S U1-70K; protein-RNA com 75.8 2.4 8.1E-05 32.7 3.5 24 1-24 161-184 (437)
263 2db1_A Heterogeneous nuclear r 75.3 1.1 3.7E-05 27.7 1.3 19 4-22 80-98 (118)
264 1wel_A RNA-binding protein 12; 71.9 2 6.7E-05 26.6 1.9 20 3-22 85-104 (124)
265 4eyt_A Telomerase associated p 52.4 34 0.0012 20.3 9.5 73 53-127 10-89 (129)
266 3fry_A Probable copper-exporti 46.1 33 0.0011 18.3 4.7 55 55-110 6-60 (73)
267 3ts2_A Protein LIN-28 homolog 42.2 6 0.00021 25.7 0.3 27 71-99 3-29 (148)
268 4e8u_A Putative uncharacterize 38.9 85 0.0029 20.9 5.6 46 56-101 13-72 (172)
269 4a4j_A Pacszia, cation-transpo 29.2 64 0.0022 16.6 4.8 53 57-109 5-60 (69)
270 2e5p_A Protein PHF1, PHD finge 28.4 34 0.0012 19.0 1.8 19 80-100 28-46 (68)
271 2m0o_A PHD finger protein 1; t 23.5 46 0.0016 19.0 1.8 20 80-101 45-64 (79)
272 3h7h_B Transcription elongatio 23.2 99 0.0034 18.6 3.5 34 81-114 40-74 (106)
273 3lpe_A Putative transcription 22.4 75 0.0026 18.5 2.8 35 81-115 39-74 (92)
274 3fut_A Dimethyladenosine trans 20.9 84 0.0029 22.2 3.2 27 56-83 111-137 (271)
275 3dxs_X Copper-transporting ATP 20.1 1.1E+02 0.0037 15.9 5.6 54 57-110 5-62 (74)
No 1
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.7e-22 Score=135.90 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=92.2
Q ss_pred ccc-cCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 2 TEM-NGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 2 ~~l-ng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
++| ||..|+| +++++++.......... ...............++|||+|||+.+++++|+++|++||
T Consensus 31 ~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 31 KQYANDNGVDG-EWTYDDATKTFTVTEGS-----------HHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp HHHHHHHTCCC-EEEEETTTTEEEEECSS-----------SSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred HHHhcCCCCCC-ceecccccCcccccccc-----------ccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 345 8888888 88888776532111000 0001111123345678999999999999999999999999
Q ss_pred CeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 81 ~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
.|..+.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|+|+|++++.
T Consensus 99 ~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 99 PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999887 8999999999999999999999999999999999998763
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=124.11 Aligned_cols=76 Identities=33% Similarity=0.577 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||..+.|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999998754 579999999999999999999999999999999999
Q ss_pred CC
Q 031850 127 RN 128 (152)
Q Consensus 127 ~~ 128 (152)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 3
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.8e-22 Score=124.47 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCC--CeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~~ 129 (152)
+.+..+|||+|||+.+++++|+++|++||.|..+.+++++|||||+|.+.++|..|++.|++ ..+.|++|+|.|++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 45679999999999999999999999999999999999999999999999999999998864 7899999999999876
Q ss_pred ccc
Q 031850 130 ANK 132 (152)
Q Consensus 130 ~~~ 132 (152)
...
T Consensus 93 ~~~ 95 (105)
T 1sjq_A 93 ELK 95 (105)
T ss_dssp SCC
T ss_pred CCC
Confidence 544
No 4
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.9e-21 Score=120.28 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHh--CCCeeCCeEeEEEecCC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL--NGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a~~ 128 (152)
...+.++|||+|||+.+++++|+++|++||.|..+.+..++|+|||+|.+.++|.+|++.| ++..+.|++|.|.|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 3456789999999999999999999999999999999999999999999999999999977 56789999999999997
Q ss_pred cccc
Q 031850 129 PANK 132 (152)
Q Consensus 129 ~~~~ 132 (152)
+..+
T Consensus 91 ~~~~ 94 (101)
T 2cq1_A 91 KELK 94 (101)
T ss_dssp SSCC
T ss_pred ccCc
Confidence 6544
No 5
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=120.93 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCe--eCCeEeEEEecCC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWGRN 128 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~a~~ 128 (152)
..+++++|||+|||+.+++++|+++|++||.|..+.+.+++|+|||+|.+.++|.+|++.|++.. +.|++|.|.|+++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34567899999999999999999999999999999999999999999999999999999999876 7899999999986
Q ss_pred c
Q 031850 129 P 129 (152)
Q Consensus 129 ~ 129 (152)
+
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 5
No 6
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-20 Score=118.01 Aligned_cols=84 Identities=33% Similarity=0.526 Sum_probs=76.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..|.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456799999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred cCCccccc
Q 031850 126 GRNPANKQ 133 (152)
Q Consensus 126 a~~~~~~~ 133 (152)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99765443
No 7
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.1e-21 Score=120.28 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCC--eeCCeEeEEEecCC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSVRLSWGRN 128 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~ 128 (152)
...+.++|||+|||+.+++++|+++|++||.|..+.+..++|+|||+|.+.++|.+|+..|++. .+.|+.|.|.|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3456789999999999999999999999999999999999999999999999999999988765 48999999999987
Q ss_pred cccc
Q 031850 129 PANK 132 (152)
Q Consensus 129 ~~~~ 132 (152)
+..+
T Consensus 91 ~~~~ 94 (104)
T 1wex_A 91 KRIT 94 (104)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6543
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.86 E-value=9.7e-21 Score=131.85 Aligned_cols=122 Identities=16% Similarity=0.340 Sum_probs=96.0
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
.|||..|.|++|+|.++.............. ...+ ............+|||+|||..+++++|+++|++||.|
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 141 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPS------VYVP-GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL 141 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSCSS------CCCT-TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCCCc------CCCC-CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 6899999999999999877643321111000 0000 11112223567899999999999999999999999999
Q ss_pred EEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 83 ~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+|+|++++..
T Consensus 142 ~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 142 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99998765 68999999999999999999999999999999999997643
No 9
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-20 Score=117.81 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=75.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 33456799999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9976543
No 10
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=120.40 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCC--eeCCeEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~ 129 (152)
.+.++|||+|||+ .+++++|+++|++||.|..+.++.++++|||+|.+.++|..|++.|++. .|.|++|.|.|+++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4678999999999 9999999999999999999999999999999999999999999998864 599999999999854
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 11
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=117.92 Aligned_cols=80 Identities=24% Similarity=0.552 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeC--CeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~~~ 129 (152)
..+.++|||+|||..+++++|+++|++||.|..+.+..++|+|||+|.+.++|++|++.|||..+. |+.|+|.|++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 355689999999999999999999999999999999988999999999999999999999999999 999999999976
Q ss_pred cc
Q 031850 130 AN 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.1e-21 Score=129.55 Aligned_cols=102 Identities=26% Similarity=0.530 Sum_probs=90.8
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|||..|.|++|+|.++...... ......+|||+|||..+++++|+++|++||.
T Consensus 59 ~~l~~~~~~g~~i~v~~~~~~~~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 113 (166)
T 3md3_A 59 QTLNGKQIENNIVKINWAFQSQQS-------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPS 113 (166)
T ss_dssp HHHTTCEETTEECEEEECCCCCCC-------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTT
T ss_pred HHcCCCccCCCeeEEEEcCCCCCC-------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCC
Confidence 468999999999999998765422 2345789999999999999999999999999
Q ss_pred eEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 82 v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
|..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+|.||++
T Consensus 114 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 114 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999988754 57999999999999999999999999999999999873
No 13
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-20 Score=118.31 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCC-----eEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-----QSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g-----~~l~v~~a 126 (152)
.....+|||+|||+.+++++|+++|++||.|..+.+..+ |||||+|.+.++|++|++.|||..|.| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 355789999999999999999999999999999999987 999999999999999999999999999 99999999
Q ss_pred CCccccc
Q 031850 127 RNPANKQ 133 (152)
Q Consensus 127 ~~~~~~~ 133 (152)
.++....
T Consensus 91 ~~~~~~~ 97 (108)
T 1x4c_A 91 GPRSPSY 97 (108)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 9876544
No 14
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=117.70 Aligned_cols=79 Identities=30% Similarity=0.565 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.+..++|+|||+|.+.++|.+|++.|+|..+.|+.|+|.|++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999998754
No 15
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=118.63 Aligned_cols=84 Identities=25% Similarity=0.553 Sum_probs=76.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHHh-CCCeeCCeEe
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKL-NGTVIGKQSV 121 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l 121 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..| ||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34466799999999999999999999999999999999766 799999999999999999999 9999999999
Q ss_pred EEEecCCccccc
Q 031850 122 RLSWGRNPANKQ 133 (152)
Q Consensus 122 ~v~~a~~~~~~~ 133 (152)
+|.|++++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999775443
No 16
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=118.62 Aligned_cols=83 Identities=30% Similarity=0.582 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3456789999999999999999999999999999998854 789999999999999999999999999999999999
Q ss_pred CCccccc
Q 031850 127 RNPANKQ 133 (152)
Q Consensus 127 ~~~~~~~ 133 (152)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9776544
No 17
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=120.77 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCC--CeeCCeEeEEEecCC
Q 031850 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRN 128 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~ 128 (152)
..+.++|||+|||+. +++++|+++|++||.|..+.+.+++|||||+|.+.++|..|++.|++ ..|.|+.|+|.|+..
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456889999999998 99999999999999999999999999999999999999999998864 569999999999986
Q ss_pred cccc
Q 031850 129 PANK 132 (152)
Q Consensus 129 ~~~~ 132 (152)
....
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 5443
No 18
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.5e-21 Score=122.61 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCC--CeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~~ 129 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++|||||+|.+.++|.+|++.|++ ..+.|++|+|.|++++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 45678999999999999999999999999999999999999999999999999999998874 6799999999999876
Q ss_pred cccc
Q 031850 130 ANKQ 133 (152)
Q Consensus 130 ~~~~ 133 (152)
..+.
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5443
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.85 E-value=2e-20 Score=130.61 Aligned_cols=128 Identities=20% Similarity=0.334 Sum_probs=96.3
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCC--------CCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHH
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSS--------QGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 73 (152)
+.|||..|.|++|+|.++.............. .........+.........++..+|||+|||..+++++|+
T Consensus 59 ~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 138 (198)
T 1qm9_A 59 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 138 (198)
T ss_dssp HHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHH
T ss_pred HHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHH
Confidence 46899999999999999886542221110000 0000011111111122233567899999999999999999
Q ss_pred HHhcccC-CeEEEEeeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEEecCCc
Q 031850 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 129 (152)
Q Consensus 74 ~~f~~~g-~v~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~~ 129 (152)
++|++|| .|..+.+.. ++|+|||+|.+.++|.+|+..|||..++ |+.|+|.|++++
T Consensus 139 ~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 139 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999 999999854 6899999999999999999999999999 999999999865
No 20
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=1.5e-20 Score=114.27 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..+.-|||+||++.+++++|+++|.+||+|..+.+..++|||||+|.+.++|.+|++.||+..+.|++|+|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999984
No 21
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.6e-20 Score=116.29 Aligned_cols=82 Identities=23% Similarity=0.477 Sum_probs=74.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..|.|+.|+|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 33456789999999999999999999999999999998764 689999999999999999999999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
+++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87643
No 22
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=114.71 Aligned_cols=78 Identities=38% Similarity=0.736 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEEecC
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 127 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~ 127 (152)
+.....++|||+|||..+++++|+++|++||.|..+.+..++|+|||+|.+.++|.+|+..| +|..+.|+.|+|+|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34466789999999999999999999999999999999999999999999999999999988 9999999999999985
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=5.3e-20 Score=118.36 Aligned_cols=83 Identities=27% Similarity=0.491 Sum_probs=74.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999988764 479999999999999999999999999999999
Q ss_pred EecCCcccc
Q 031850 124 SWGRNPANK 132 (152)
Q Consensus 124 ~~a~~~~~~ 132 (152)
.|++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999976543
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=117.31 Aligned_cols=83 Identities=25% Similarity=0.491 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999998754 5799999999999999999999999999999999
Q ss_pred ecCCccccc
Q 031850 125 WGRNPANKQ 133 (152)
Q Consensus 125 ~a~~~~~~~ 133 (152)
|++++..+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999775443
No 25
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=118.43 Aligned_cols=81 Identities=33% Similarity=0.675 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
....++|||+|||..+++++|+++|++||.|..+.+..++|||||+|.+.++|.+|+..|+|..+.|+.|+|.|++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.84 E-value=3.2e-20 Score=132.68 Aligned_cols=128 Identities=20% Similarity=0.334 Sum_probs=95.6
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCC--------CCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHH
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSS--------QGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 73 (152)
+.|||..|.|++|+|.++.............. .........+.........++..+|||+|||..+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 46899999999999999886532221110000 0000001111111111223457899999999999999999
Q ss_pred HHhcccC-CeEEEEeeC-CCCEEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEEecCCc
Q 031850 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 129 (152)
Q Consensus 74 ~~f~~~g-~v~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~~ 129 (152)
++|++|| .|..+.+.. ++|+|||+|.+.++|.+|+..|+|..+. |+.|+|+|++++
T Consensus 170 ~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 170 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999 999999844 7899999999999999999999999999 999999999875
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=117.33 Aligned_cols=82 Identities=27% Similarity=0.573 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|+|..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 356789999999999999999999999999999998764 78999999999999999999999999999999999
Q ss_pred cCCccccc
Q 031850 126 GRNPANKQ 133 (152)
Q Consensus 126 a~~~~~~~ 133 (152)
++++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99875444
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.2e-20 Score=121.53 Aligned_cols=79 Identities=32% Similarity=0.591 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
...+|||+|||+.+++++|+++|++||.|..++++.+ +|||||+|.+.++|++|++.|+|..|.|+.|+|.+++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3568999999999999999999999999999998764 689999999999999999999999999999999999876
Q ss_pred ccc
Q 031850 130 ANK 132 (152)
Q Consensus 130 ~~~ 132 (152)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.4e-20 Score=117.32 Aligned_cols=82 Identities=27% Similarity=0.547 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCC---eEeEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK---QSVRL 123 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g---~~l~v 123 (152)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356789999999999999999999999999999999875 6899999999999999999999999988 99999
Q ss_pred EecCCccccc
Q 031850 124 SWGRNPANKQ 133 (152)
Q Consensus 124 ~~a~~~~~~~ 133 (152)
.|++++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999776554
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-20 Score=116.81 Aligned_cols=83 Identities=25% Similarity=0.484 Sum_probs=75.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999999999999999999999999999998764 589999999999999999999999999999999
Q ss_pred EecCCcccc
Q 031850 124 SWGRNPANK 132 (152)
Q Consensus 124 ~~a~~~~~~ 132 (152)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999976543
No 31
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.84 E-value=3.8e-20 Score=118.18 Aligned_cols=77 Identities=32% Similarity=0.610 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 53 SSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 53 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
...++|||+|||+. +++++|+++|++||.|..+.+. +|+|||+|.+.++|++|+..|+|..+.|+.|+|.+++++..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 44689999999999 9999999999999999999884 89999999999999999999999999999999999986543
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=5e-20 Score=135.04 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCC-CEEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 127 (152)
.+.++|||+|||..+++++|+++|++||.|..+.+..++ |+|||+|.+.++|.+|+..|||..+. |+.|+|+|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 456889999999999999999999999999999998876 99999999999999999999999999 9999999986
No 33
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=115.66 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 53 SSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
...++|||+|||+.+++++|+ ++|++||.|..+.+..+ +|||||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999 99999999999999865 79999999999999999999999999999999999
Q ss_pred cCCccc
Q 031850 126 GRNPAN 131 (152)
Q Consensus 126 a~~~~~ 131 (152)
++++..
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987654
No 34
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-20 Score=113.30 Aligned_cols=80 Identities=25% Similarity=0.483 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
.....++|||+|||+.+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|+..|||..+.|+.|+|++++++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 34567899999999999999999999999999999998 6699999999999999999999999999999999998765
Q ss_pred cc
Q 031850 131 NK 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.6e-20 Score=115.07 Aligned_cols=80 Identities=20% Similarity=0.445 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999998764 489999999999999999999999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 97653
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.6e-20 Score=114.84 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999998764 59999999999999999999999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987544
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=9.3e-20 Score=117.16 Aligned_cols=83 Identities=31% Similarity=0.691 Sum_probs=75.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|+|..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999998765 589999999999999999999999999999999
Q ss_pred EecCCcccc
Q 031850 124 SWGRNPANK 132 (152)
Q Consensus 124 ~~a~~~~~~ 132 (152)
.|++++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999976544
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=8.5e-20 Score=114.38 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
....++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++ |++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999763 6999999999999999998 999999999999999
Q ss_pred cCCccccc
Q 031850 126 GRNPANKQ 133 (152)
Q Consensus 126 a~~~~~~~ 133 (152)
+.++..+.
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99775443
No 39
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-19 Score=113.37 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccc--CCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
...+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34567899999999999999999999999 899998877 78999999999999999999999999999999999997
Q ss_pred ccc
Q 031850 129 PAN 131 (152)
Q Consensus 129 ~~~ 131 (152)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 40
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=2.7e-20 Score=126.89 Aligned_cols=98 Identities=16% Similarity=0.460 Sum_probs=87.8
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
.|||..|.|++|+|.++...... ....+|||+|||..+++++|+++|++||.|
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPL---------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCC---------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred HhCCcEecCceeeecCCcccCCC---------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 68999999999999986654321 237899999999999999999999999999
Q ss_pred EEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 83 ASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 83 ~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|.|+||.
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99998765 5899999999999999999999999999999999973
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1e-19 Score=116.20 Aligned_cols=84 Identities=21% Similarity=0.461 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhC------CCeeC
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLN------GTVIG 117 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~------g~~~~ 117 (152)
....+.++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34456789999999999999999999999999999998743 7899999999999999999999 99999
Q ss_pred CeEeEEEecCCccccc
Q 031850 118 KQSVRLSWGRNPANKQ 133 (152)
Q Consensus 118 g~~l~v~~a~~~~~~~ 133 (152)
|+.|+|.|+.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999775443
No 42
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=112.95 Aligned_cols=79 Identities=25% Similarity=0.509 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|++|+..|+|..+.|+.|+|.|++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3567899999999999999999999999999999998 89999999999999999999999999999999999997654
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 43
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=2.7e-21 Score=136.84 Aligned_cols=105 Identities=30% Similarity=0.467 Sum_probs=91.7
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.||+..+.|+.|++.++....... .....+|||+|||+.+++++|+++|++||.
T Consensus 75 ~~~~~~~~~g~~i~~~~~~~~~~~~-------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 129 (213)
T 4f02_A 75 DTMNFDVIKGKPVRIMWSQRDPSLR-------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGN 129 (213)
T ss_dssp HHHTTCEETTEECEEEECCCCTHHH-------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHhhhhhcCCccccccccccccccc-------------------------ccccccceECCcccccHHHHHHHHHhhcCC
Confidence 5689999999999999876653221 123468999999999999999999999999
Q ss_pred eEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 82 IASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 82 v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
|..+.++.+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|.+++++..
T Consensus 130 i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 130 ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred eEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 999998753 68999999999999999999999999999999999997653
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=116.23 Aligned_cols=83 Identities=25% Similarity=0.466 Sum_probs=75.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
+...+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|+..|||..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456799999999999999999999999999999998753 689999999999999999999999999999999
Q ss_pred EecCCcccc
Q 031850 124 SWGRNPANK 132 (152)
Q Consensus 124 ~~a~~~~~~ 132 (152)
.++++....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999976443
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=115.08 Aligned_cols=82 Identities=29% Similarity=0.570 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEE-EeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.+.++|||+|||+.+++++|+++|++||.|..+ .+..+ +|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999988 88764 68999999999999999999999999999999999
Q ss_pred cCCcccccC
Q 031850 126 GRNPANKQA 134 (152)
Q Consensus 126 a~~~~~~~~ 134 (152)
+.++..+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 997765443
No 46
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.7e-20 Score=117.10 Aligned_cols=78 Identities=26% Similarity=0.476 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
....++|||+|||..+++++|+++|++||.|..+.+...+|||||+|.+.++|.+|+..|||..+.|+.|+|.|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999863
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=4.9e-20 Score=111.77 Aligned_cols=76 Identities=29% Similarity=0.621 Sum_probs=71.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
+.+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|.|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999998755 68999999999999999999999999999999999997
Q ss_pred cc
Q 031850 129 PA 130 (152)
Q Consensus 129 ~~ 130 (152)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=118.68 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
++..+|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999998753 589999999999999999999999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=112.46 Aligned_cols=77 Identities=26% Similarity=0.456 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
..++.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred ecC
Q 031850 125 WGR 127 (152)
Q Consensus 125 ~a~ 127 (152)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 50
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=5.2e-20 Score=117.34 Aligned_cols=80 Identities=31% Similarity=0.608 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
......++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.|++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 344667899999999999999999999999999999998 899999999999999999999999999999999999976
Q ss_pred cc
Q 031850 130 AN 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 51
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9e-20 Score=112.39 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
....++|||+|||+.+++++|+++|++||.|..+.+. +++|||+|.+.++|++|+..|+|..+.|+.|+|.+++++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 4567899999999999999999999999999999998 66999999999999999999999999999999999997643
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
+
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.5e-19 Score=114.10 Aligned_cols=80 Identities=29% Similarity=0.553 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|++|+..|+|..|.|+.|+|.|++++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3457899999999999999999999999999999988 67999999999999999999999999999999999987754
Q ss_pred cc
Q 031850 132 KQ 133 (152)
Q Consensus 132 ~~ 133 (152)
+.
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 53
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=1.1e-19 Score=113.65 Aligned_cols=78 Identities=28% Similarity=0.485 Sum_probs=71.9
Q ss_pred CCCCCCceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 50 EGDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
...++.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3446689999999998 99999999999999999999886 89999999999999999999999999999999999986
Q ss_pred c
Q 031850 129 P 129 (152)
Q Consensus 129 ~ 129 (152)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=117.17 Aligned_cols=80 Identities=35% Similarity=0.552 Sum_probs=74.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|+|..+.|+.|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34456789999999999999999999999999999999765 79999999999999999999999999999999999
Q ss_pred cCCc
Q 031850 126 GRNP 129 (152)
Q Consensus 126 a~~~ 129 (152)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 55
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=116.11 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=74.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeE--------EEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCe
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG------KGCGFVQFANRENAEEALHKLNGTV 115 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~ 115 (152)
......++|||+|||+.+++++|+++|++||.|. .+.+..+ +|||||+|.+.++|.+|+..|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3446679999999999999999999999999998 5877654 6899999999999999999999999
Q ss_pred eCCeEeEEEecCCcccc
Q 031850 116 IGKQSVRLSWGRNPANK 132 (152)
Q Consensus 116 ~~g~~l~v~~a~~~~~~ 132 (152)
|.|+.|+|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999976544
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.6e-20 Score=115.14 Aligned_cols=81 Identities=31% Similarity=0.629 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999764 68999999999999999999999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 57
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=5.6e-20 Score=125.82 Aligned_cols=101 Identities=24% Similarity=0.391 Sum_probs=88.4
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCe
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 82 (152)
+|||..|.|++|+|.++.++... ......+|||+|||..+++++|+++|++||.|
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~~-------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDSK-------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSCS-------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred hcCCCEeCCeEEEEecCCCcccc-------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 48999999999999998775422 12457899999999999999999999999988
Q ss_pred EEEEee--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 83 ASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 83 ~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..+ .. ..+|+|||+|.+.++|.+|+..|||..+.|+.|+|+|+.++
T Consensus 127 ~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 127 RLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 877 21 24799999999999999999999999999999999999875
No 58
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=112.20 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999764 589999999999999999999999999999999999
Q ss_pred CCcccc
Q 031850 127 RNPANK 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 976543
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=112.49 Aligned_cols=77 Identities=31% Similarity=0.690 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+..+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999998764 589999999999999999999999999999999999
Q ss_pred CCc
Q 031850 127 RNP 129 (152)
Q Consensus 127 ~~~ 129 (152)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-19 Score=114.62 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 355789999999999999999999999999999998765 689999999999999999999999999999999999
Q ss_pred CCcccc
Q 031850 127 RNPANK 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
+....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 865433
No 61
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=116.48 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEEec
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWG 126 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a 126 (152)
+.+|||+|||+.+++++|+++|++|| .|..++++++ +|||||+|.+.++|.+|++.+ ++..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999988753 699999999999999999877 456799999999999
Q ss_pred CCcccc
Q 031850 127 RNPANK 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 976543
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=9.9e-20 Score=111.51 Aligned_cols=77 Identities=34% Similarity=0.588 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
..++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999998854 4789999999999999999999999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=112.96 Aligned_cols=79 Identities=35% Similarity=0.509 Sum_probs=72.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
....+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999998753 579999999999999999999999999999999
Q ss_pred EecCC
Q 031850 124 SWGRN 128 (152)
Q Consensus 124 ~~a~~ 128 (152)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 64
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=9.2e-20 Score=116.32 Aligned_cols=80 Identities=23% Similarity=0.492 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999998754 6999999999999999999999999999999999
Q ss_pred ecCCcc
Q 031850 125 WGRNPA 130 (152)
Q Consensus 125 ~a~~~~ 130 (152)
|++++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998654
No 65
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=5.2e-20 Score=124.98 Aligned_cols=98 Identities=27% Similarity=0.513 Sum_probs=87.6
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|||..|.|++|+|.++.+... .....+|||+|||..+++++|+++|++||.
T Consensus 63 ~~l~~~~~~g~~l~v~~~~~~~~---------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 115 (168)
T 1b7f_A 63 KVLNGITVRNKRLKVSYARPGGE---------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGS 115 (168)
T ss_dssp HHHTTCEETTEECEEEECCCCSS---------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSC
T ss_pred HhcCCCEeCCcEEEEEecCCCcc---------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCc
Confidence 46899999999999999876532 134689999999999999999999999999
Q ss_pred eEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEec
Q 031850 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWG 126 (152)
Q Consensus 82 v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a 126 (152)
|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.| ++|+|+||
T Consensus 116 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 116 IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999988764 3899999999999999999999999987 99999986
No 66
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.8e-19 Score=110.58 Aligned_cols=79 Identities=27% Similarity=0.499 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
..+.++|||+|+ .+++++|+++|++||.|..+.+...+|+|||+|.+.++|.+|+..|+|..+.|+.|+|.|++++..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 346789999995 899999999999999999999988899999999999999999999999999999999999987654
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=1.2e-19 Score=110.51 Aligned_cols=75 Identities=28% Similarity=0.635 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|||..+.|+.|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999999999999999988643 799999999999999999999999999999999998
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 68
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.9e-20 Score=116.82 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
....++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|++|+..|+|..+.|+.|+|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 456789999999999999999999999999999998754 58999999999999999999999999999999999
Q ss_pred cCCcc
Q 031850 126 GRNPA 130 (152)
Q Consensus 126 a~~~~ 130 (152)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98654
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=1.4e-19 Score=112.84 Aligned_cols=79 Identities=22% Similarity=0.464 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3579999999999999999999999999999998754 6999999999999999999999999999999999999
Q ss_pred Ccccc
Q 031850 128 NPANK 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76533
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=113.77 Aligned_cols=80 Identities=28% Similarity=0.508 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC---------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
.+.++|||+|||+.+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999998874 2579999999999999999999999999999999
Q ss_pred EecCCcccc
Q 031850 124 SWGRNPANK 132 (152)
Q Consensus 124 ~~a~~~~~~ 132 (152)
.+++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 71
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=114.42 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCC-eEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCC-CeeCCeEeEEEecCCcc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALHKLNG-TVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~~~~ 130 (152)
...++|||+|||+.+++++|+++|++||. |..+.+ ..+|||||+|.+.++|.+|+..||| ..+.|+.|+|.|++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45689999999999999999999999998 555444 4589999999999999999999999 99999999999999775
Q ss_pred ccc
Q 031850 131 NKQ 133 (152)
Q Consensus 131 ~~~ 133 (152)
.+.
T Consensus 85 ~~~ 87 (93)
T 2cqh_A 85 LRS 87 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=7.2e-20 Score=120.20 Aligned_cols=81 Identities=33% Similarity=0.513 Sum_probs=74.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
....+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|+|..|.|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999753 689999999999999999999999999999999
Q ss_pred EecCCcc
Q 031850 124 SWGRNPA 130 (152)
Q Consensus 124 ~~a~~~~ 130 (152)
.|++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 73
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.3e-19 Score=115.78 Aligned_cols=78 Identities=27% Similarity=0.508 Sum_probs=71.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999754 689999999999999999999999999999999
Q ss_pred EecC
Q 031850 124 SWGR 127 (152)
Q Consensus 124 ~~a~ 127 (152)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 74
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=7.1e-21 Score=134.21 Aligned_cols=116 Identities=21% Similarity=0.419 Sum_probs=93.0
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|||..|.|++|+|.++........... ..........+|||+|||..+++++|+++|++||.
T Consensus 88 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRPSNIGQAQPIID----------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp HHHSSCCCC-CCCEEECCSCCGGGHHHHH----------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred HHccCCeeCCeeEEEecCCCccccchhhh----------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 46899999999999988765532110000 00011245689999999999999999999999999
Q ss_pred eEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 82 v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
|..+.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|.|+.++....
T Consensus 152 v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 152 IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 999998765 6899999999999999999999999999999999999775443
No 75
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-19 Score=112.86 Aligned_cols=78 Identities=29% Similarity=0.552 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.+.++|||+|||+.+++++|+++|+.|| |..+.++.+ +|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999998753 689999999999999999 8999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987544
No 76
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-19 Score=111.65 Aligned_cols=78 Identities=18% Similarity=0.454 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEee--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
....++|||+|||+.+++++|+++|++||.|. +.+. ..+|||||+|.+.++|++|+..|||..+.|+.|+|.+++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34578999999999999999999999999885 4443 45899999999999999999999999999999999999876
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=113.92 Aligned_cols=77 Identities=17% Similarity=0.400 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC--eEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIGKQ 119 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~----~~~g~ 119 (152)
.....+|||+|||+.+|+++|+++|++||. +..|+++++ +|||||+|.+.++|.+|++.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999995 668887764 689999999999999999999997 48999
Q ss_pred EeEEEecCC
Q 031850 120 SVRLSWGRN 128 (152)
Q Consensus 120 ~l~v~~a~~ 128 (152)
+|.|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999984
No 78
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=118.15 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+ .|+|..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999753 689999999999999999 89999999999999999
Q ss_pred CCccccc
Q 031850 127 RNPANKQ 133 (152)
Q Consensus 127 ~~~~~~~ 133 (152)
+++..+.
T Consensus 102 ~~~~~~~ 108 (114)
T 2cq4_A 102 QAEKNRL 108 (114)
T ss_dssp HHHHHHH
T ss_pred CCCccCC
Confidence 8765443
No 79
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-19 Score=116.40 Aligned_cols=86 Identities=28% Similarity=0.453 Sum_probs=76.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999988753 689999999999999999999999999999999
Q ss_pred EecCCcccccCC
Q 031850 124 SWGRNPANKQAS 135 (152)
Q Consensus 124 ~~a~~~~~~~~~ 135 (152)
.++++...+...
T Consensus 117 ~~a~~~~~~~~~ 128 (139)
T 1u6f_A 117 ALAASGHQRPGI 128 (139)
T ss_dssp EESSCCCCCCCS
T ss_pred EECCCCCCCCCC
Confidence 999987655433
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=115.70 Aligned_cols=80 Identities=23% Similarity=0.518 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
....+|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|+|..+.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999875 4999999999999999999999999999999999998
Q ss_pred Ccccc
Q 031850 128 NPANK 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=2e-19 Score=113.92 Aligned_cols=82 Identities=22% Similarity=0.477 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCee---CCeEe
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVI---GKQSV 121 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~---~g~~l 121 (152)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999998763 68999999999999999999999998 89999
Q ss_pred EEEecCCcccc
Q 031850 122 RLSWGRNPANK 132 (152)
Q Consensus 122 ~v~~a~~~~~~ 132 (152)
+|.+++++...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999976543
No 82
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.82 E-value=6.6e-20 Score=134.54 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=93.9
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCC-CHHHHHHHhcccC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNV-TDEDLRQPFSQYG 80 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g 80 (152)
+.|||..|+|++|+|.++.+.... .......+|||+|||..+ ++++|+++|+.||
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~~------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQLT------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGCC------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred HHhCCCEeCCcEEEEEECCCCCCC------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 478999999999999998775422 122457899999999995 9999999999999
Q ss_pred CeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccc
Q 031850 81 EIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (152)
Q Consensus 81 ~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (152)
.|..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+|.|+.++..+
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 9999998764 689999999999999999999999999999999999977543
No 83
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=113.28 Aligned_cols=79 Identities=30% Similarity=0.473 Sum_probs=71.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEeeCC------CCEEEEEeCCHHHHHHHHHHhCCC
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGT 114 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~ 114 (152)
+.......+|||+|||+.+++++|+++|++||.|.. +.+..+ +|+|||+|.+.++|++|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999998 888654 589999999999999999999999
Q ss_pred eeCCeEeEEEecC
Q 031850 115 VIGKQSVRLSWGR 127 (152)
Q Consensus 115 ~~~g~~l~v~~a~ 127 (152)
.+.|+.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=112.58 Aligned_cols=78 Identities=31% Similarity=0.441 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.|+.|+|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456789999999999999999999999999999998765 58999999999999999999999999999999999
Q ss_pred cCC
Q 031850 126 GRN 128 (152)
Q Consensus 126 a~~ 128 (152)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 85
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7e-19 Score=113.24 Aligned_cols=81 Identities=35% Similarity=0.531 Sum_probs=73.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
.......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344466799999999999999999999999999999999764 58999999999999999999998 89999999
Q ss_pred EEecCCcc
Q 031850 123 LSWGRNPA 130 (152)
Q Consensus 123 v~~a~~~~ 130 (152)
|+++.+..
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997653
No 86
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=115.38 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCee-----CCeEeEEEe
Q 031850 53 SSNTTIFV--GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI-----GKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~-----~g~~l~v~~ 125 (152)
.+..+||| +||++.+++++|+++|++||.|..+.+..++|||||+|.+.++|++|++.|||..+ .|++|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45788999 77999999999999999999999999988899999999999999999999999998 689999999
Q ss_pred cCCccccc
Q 031850 126 GRNPANKQ 133 (152)
Q Consensus 126 a~~~~~~~ 133 (152)
++..+...
T Consensus 103 a~~~p~~~ 110 (114)
T 2cq2_A 103 VEKVQWSG 110 (114)
T ss_dssp ESCCCCSS
T ss_pred cccCcccC
Confidence 98655443
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=115.23 Aligned_cols=81 Identities=30% Similarity=0.594 Sum_probs=73.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999988753 589999999999999999999999999999999
Q ss_pred EecCCcc
Q 031850 124 SWGRNPA 130 (152)
Q Consensus 124 ~~a~~~~ 130 (152)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998754
No 88
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.2e-19 Score=112.10 Aligned_cols=80 Identities=30% Similarity=0.488 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 356789999999999999999999999999999988753 6899999999999999999999999999999999998
Q ss_pred Cccc
Q 031850 128 NPAN 131 (152)
Q Consensus 128 ~~~~ 131 (152)
++..
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7643
No 89
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=9.1e-20 Score=113.73 Aligned_cols=81 Identities=22% Similarity=0.499 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCCeEEEEeeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
..+.++|||+|||..+++++|+ ++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..+.|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999 9999999999998873 47999999999999999999999999999999999
Q ss_pred ecCCcccc
Q 031850 125 WGRNPANK 132 (152)
Q Consensus 125 ~a~~~~~~ 132 (152)
|++++...
T Consensus 85 ~a~~~~~~ 92 (97)
T 1nu4_A 85 YAKTDSDI 92 (97)
T ss_dssp ECSSCCTH
T ss_pred EccCCCcc
Confidence 99976543
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.3e-19 Score=118.33 Aligned_cols=82 Identities=26% Similarity=0.513 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999998764 7999999999999999999999999999999999
Q ss_pred ecCCcccc
Q 031850 125 WGRNPANK 132 (152)
Q Consensus 125 ~a~~~~~~ 132 (152)
|+.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99865543
No 91
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.81 E-value=4.6e-20 Score=130.02 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=89.0
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCC-----CCCC-----CCCCCCCCCCCCCCCceEEEcCCCCCCCHH
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGG-----YASN-----GAPGQGPQSEGDSSNTTIFVGGLDPNVTDE 70 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 70 (152)
|+.|||..|.||+|+|.++..+...+........+. .... ..+.........++..+|||+|||+.++++
T Consensus 59 i~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~ 138 (205)
T 3tyt_A 59 ITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE 138 (205)
T ss_dssp HHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH
T ss_pred HHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH
Confidence 357999999999999999876543211100000000 0000 000000001123457899999999999999
Q ss_pred HHHHHhcccCCe--EEEEeeCC----CCEEEEEeCCHHHHHHHHHHhCCCeeCCe----EeEEEec
Q 031850 71 DLRQPFSQYGEI--ASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQ----SVRLSWG 126 (152)
Q Consensus 71 ~l~~~f~~~g~v--~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~a 126 (152)
+|+++|++||.| ..+++..+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|++|
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999998 88888764 48999999999999999999999999877 5777665
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=5.6e-19 Score=111.41 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..+.++|||+|||+.+++++|+++|++|| |..+.++.+ +|||||+|.+.++|.+|+ .|+|..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35578999999999999999999999997 999988764 579999999999999999 8999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9976543
No 93
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-18 Score=113.16 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEecCCcc
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPA 130 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 130 (152)
....|||+||++.+++++|+++|++||.|..+.+....|+ |||+|.+.++|..|++.|||..|.| +.|+|.||+++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3456789999999999999999999999999988655696 9999999999999999999999987 699999999875
Q ss_pred c
Q 031850 131 N 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 94
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-20 Score=116.86 Aligned_cols=76 Identities=22% Similarity=0.398 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..++|||+|||+.+++++|+++|++||.|..+.+..++++|||+|.+.++|++|+..|||..+.|+.|.|.|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4679999999999999999999999999999999989999999999999999999999999999999999999754
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=1.1e-18 Score=113.60 Aligned_cols=80 Identities=19% Similarity=0.398 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456789999999999999999999999999999999763 699999999999999999999999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87543
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=113.62 Aligned_cols=77 Identities=30% Similarity=0.551 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (152)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|+|++++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999886 999999999999999999999999999999999999977644
No 97
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=118.50 Aligned_cols=82 Identities=17% Similarity=0.424 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCCeEEEEeeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
..+..+|||+|||+.+++++|+ ++|++||.|..|.+.. .+|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3557899999999999998865 6999999999998864 47999999999999999999999999999999999
Q ss_pred ecCCccccc
Q 031850 125 WGRNPANKQ 133 (152)
Q Consensus 125 ~a~~~~~~~ 133 (152)
|++++....
T Consensus 106 ~a~~~~~~~ 114 (127)
T 2a3j_A 106 FSETPQSQV 114 (127)
T ss_dssp ECCCCCHHH
T ss_pred EccCcchhc
Confidence 999775444
No 98
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-19 Score=113.00 Aligned_cols=79 Identities=28% Similarity=0.441 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 52 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|+..|+|..+.|+.|+|.+++++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 45688999999998 99999999999999999999997 8999999999999999999999999999999999998664
Q ss_pred cc
Q 031850 131 NK 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 33
No 99
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.81 E-value=1.1e-19 Score=123.00 Aligned_cols=98 Identities=32% Similarity=0.622 Sum_probs=86.4
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|||..+.|++|+|.++.+.... ....+|||+|||..+++++|+++|++||.
T Consensus 62 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 62 NTLNGLRLQTKTIKVSYARPSSAS---------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp HHHTTCEETTEECEEEECCCCCGG---------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCccCCceEEEEecCCCccc---------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 468999999999999998755321 34578999999999999999999999999
Q ss_pred eEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE--eEEEec
Q 031850 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS--VRLSWG 126 (152)
Q Consensus 82 v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~--l~v~~a 126 (152)
|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.|+. |+|+||
T Consensus 115 i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 115 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999988754 589999999999999999999999999974 888886
No 100
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.80 E-value=1.9e-19 Score=115.15 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccC-CeEEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
+....+|||+|||+.+++++|+++|++|| .|..+.+.. .+|||||+|.+.++|++|++.|||..+.|+.|+|.+++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 899998863 489999999999999999999999999999999999985
Q ss_pred cc
Q 031850 129 PA 130 (152)
Q Consensus 129 ~~ 130 (152)
++
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 54
No 101
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=109.56 Aligned_cols=81 Identities=26% Similarity=0.348 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEee--CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
...+.++|||+|||+.+++++|+++|++||.|.-+... ..+|+|||+|.+.++|++|+..|+|..|.|+.|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 34567999999999999999999999999987322111 1379999999999999999999999999999999999997
Q ss_pred ccc
Q 031850 129 PAN 131 (152)
Q Consensus 129 ~~~ 131 (152)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 102
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=111.63 Aligned_cols=79 Identities=29% Similarity=0.555 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeE-EEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE----
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS---- 120 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~---- 120 (152)
....++|||+|||+.+++++|+++|++||.|. .+.+..+ +|||||+|.+.++|++|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35679999999999999999999999999999 9988765 389999999999999999999999999999
Q ss_pred eEEEecCCcc
Q 031850 121 VRLSWGRNPA 130 (152)
Q Consensus 121 l~v~~a~~~~ 130 (152)
|+|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998764
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-19 Score=112.00 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHhcccCCeEEEEeeCC---------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLR---QPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
....+|||+|||+.+++++|+ ++|++||.|..+.+..+ +|||||+|.+.++|++|++.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 99999999999999864 279999999999999999999999999999
Q ss_pred eEEEecCCcc
Q 031850 121 VRLSWGRNPA 130 (152)
Q Consensus 121 l~v~~a~~~~ 130 (152)
|+|.||.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999765
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=112.94 Aligned_cols=81 Identities=33% Similarity=0.560 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-cCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCe-eCCeEeEEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGKQSVRLS 124 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~-~~g~~l~v~ 124 (152)
..+..+|||+|||+.+++++|+++|++ ||.|..+.+..+ +|||||+|.+.++|.+|+..|+|.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 999999998764 6899999999999999999999999 999999999
Q ss_pred ecCCcccc
Q 031850 125 WGRNPANK 132 (152)
Q Consensus 125 ~a~~~~~~ 132 (152)
++.++..+
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876544
No 105
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=3.6e-20 Score=120.62 Aligned_cols=79 Identities=25% Similarity=0.482 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+ .|+|..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999988653 689999999999999999 799999999999999998
Q ss_pred Cccccc
Q 031850 128 NPANKQ 133 (152)
Q Consensus 128 ~~~~~~ 133 (152)
+.....
T Consensus 114 ~~~~~~ 119 (124)
T 2jwn_A 114 TNMPGI 119 (124)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 765443
No 106
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=2e-19 Score=132.44 Aligned_cols=107 Identities=23% Similarity=0.515 Sum_probs=90.2
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHHhcccC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYG 80 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g 80 (152)
+.|||..|+|++|+|.++.+....... ........+|||+|||.. +++++|+++|++||
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC-----------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc--------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 458999999999999998876433210 122356789999999999 99999999999999
Q ss_pred CeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 81 EIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 81 ~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.|..+.+..+ +|+|||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 237 ~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 237 SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999998653 589999999999999999 99999999999999999875
No 107
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=5e-19 Score=122.96 Aligned_cols=108 Identities=19% Similarity=0.360 Sum_probs=84.3
Q ss_pred ccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeE
Q 031850 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (152)
Q Consensus 4 lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 83 (152)
+++..|.|+.|.|.++....... .+.......+|||+|||+.+++++|+++|+.||.|.
T Consensus 74 ~~~~~~~g~~l~v~~~~~~~~~~---------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 74 ARPHKVDGRVVEPKRAVSREDSQ---------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp TCSCEETTEECEEEECCC--------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred cCCCEECCEEeeeecccCccccc---------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 37889999999999987654321 011234568999999999999999999999999999
Q ss_pred EEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccccc
Q 031850 84 SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 133 (152)
Q Consensus 84 ~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 133 (152)
.+.+..+ +|+|||+|.+.++|.+|+.. +|..++|+.|.|.++.++....
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9988754 58999999999999999985 8999999999999999775443
No 108
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=6.9e-19 Score=111.63 Aligned_cols=77 Identities=21% Similarity=0.432 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
...+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|+..|+|..+.|+.|+|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999998754 68999999999999999999999999999999999
Q ss_pred cC
Q 031850 126 GR 127 (152)
Q Consensus 126 a~ 127 (152)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=116.92 Aligned_cols=81 Identities=20% Similarity=0.443 Sum_probs=72.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEE--EEeeCC------CCEEEEEeCCHHHHHHHHHHhCCC----eeC
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--VKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIG 117 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~----~~~ 117 (152)
.......+|||+|||+.+++++|+++|++||.|.. |+++.+ +|||||+|.+. +|.+|+..|||. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33456789999999999999999999999999966 887654 69999999999 999999999999 999
Q ss_pred CeEeEEEecCCccc
Q 031850 118 KQSVRLSWGRNPAN 131 (152)
Q Consensus 118 g~~l~v~~a~~~~~ 131 (152)
|+.|+|+++++...
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987643
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-18 Score=110.92 Aligned_cols=78 Identities=18% Similarity=0.463 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCee--------CC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI--------GK 118 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~--------~g 118 (152)
....++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356789999999999999999999999999999998764 68999999999999999999999999 67
Q ss_pred eEeEEEecCCc
Q 031850 119 QSVRLSWGRNP 129 (152)
Q Consensus 119 ~~l~v~~a~~~ 129 (152)
++|.|.|+.|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999865
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.7e-19 Score=119.30 Aligned_cols=84 Identities=26% Similarity=0.516 Sum_probs=75.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 49 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
++.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|+..|+|..|.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344456789999999999999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEecCCcccc
Q 031850 123 LSWGRNPANK 132 (152)
Q Consensus 123 v~~a~~~~~~ 132 (152)
|.|++++...
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999976544
No 112
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=114.82 Aligned_cols=77 Identities=27% Similarity=0.604 Sum_probs=70.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
....+..+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999998764 799999999999999999999999999999999
Q ss_pred Eec
Q 031850 124 SWG 126 (152)
Q Consensus 124 ~~a 126 (152)
+||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=111.20 Aligned_cols=82 Identities=27% Similarity=0.504 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCe----EEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..+.++|||+|||+.+++++|+++|++||.| ..+.+.. .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999987 4555543 379999999999999999999999999999999999
Q ss_pred cCCccccc
Q 031850 126 GRNPANKQ 133 (152)
Q Consensus 126 a~~~~~~~ 133 (152)
++++..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 99765443
No 114
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=111.81 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+.. ++..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 3456789999999999999999999999999999998764 48999999999999999998 9999999999999
Q ss_pred ecCCcccc
Q 031850 125 WGRNPANK 132 (152)
Q Consensus 125 ~a~~~~~~ 132 (152)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99976543
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=1.3e-18 Score=117.62 Aligned_cols=81 Identities=27% Similarity=0.535 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.....+|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355789999999999999999999999999999998764 68999999999999999999999999999999999
Q ss_pred cCCcccc
Q 031850 126 GRNPANK 132 (152)
Q Consensus 126 a~~~~~~ 132 (152)
++++...
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9976544
No 116
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=111.41 Aligned_cols=77 Identities=27% Similarity=0.363 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|||+|||+.+++++|+++|++||.|..+.++. .+|+|||+|.+.++|++|+..|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568999999999999999999999999886554432 2689999999999999999999999999999999999
Q ss_pred CCc
Q 031850 127 RNP 129 (152)
Q Consensus 127 ~~~ 129 (152)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 854
No 117
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.7e-19 Score=120.42 Aligned_cols=82 Identities=23% Similarity=0.490 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
...+.++|||+|||+.+++++|+.+|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999998764 5899999999999999999999999999999999
Q ss_pred ecCCcccc
Q 031850 125 WGRNPANK 132 (152)
Q Consensus 125 ~a~~~~~~ 132 (152)
|+.++..+
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99866543
No 118
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=112.47 Aligned_cols=79 Identities=28% Similarity=0.506 Sum_probs=68.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
......++|||+|||+.+++++|+++|+.|| |..+.+..+ +|||||+|.+.++|.+|+ .|+|..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445679999999999999999999999999 999998754 589999999999999999 8999999999999
Q ss_pred EEecCCcc
Q 031850 123 LSWGRNPA 130 (152)
Q Consensus 123 v~~a~~~~ 130 (152)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998653
No 119
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=107.37 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....+|||+|||+.+++++|+++|+.| .|..+.++.+ +|+|||+|.+.++|.+|+. |+|..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567899999999999999999999999 8999988764 6899999999999999999 9999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
.+++
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 120
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=111.06 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCC-eEEEEee-------CCCCEEEEEeCCHHHHHHHHHHhC--CCeeCCeEeE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-------VGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVR 122 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-------~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l~ 122 (152)
.+.++|||+|||+.+++++|+++|++||. |..+.++ ..+|||||+|.+.++|.+|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999987 347999999999999999999996 5899999999
Q ss_pred EEecCCccc
Q 031850 123 LSWGRNPAN 131 (152)
Q Consensus 123 v~~a~~~~~ 131 (152)
|.|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999997654
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=111.90 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999999999764 68999999999999999987 999999999999999
Q ss_pred CCcccc
Q 031850 127 RNPANK 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 977543
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=1.1e-18 Score=107.11 Aligned_cols=74 Identities=24% Similarity=0.502 Sum_probs=69.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+ .|+|..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999988754 689999999999999999 8999999999999999986
Q ss_pred c
Q 031850 129 P 129 (152)
Q Consensus 129 ~ 129 (152)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=7.6e-20 Score=112.79 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccC--CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
.+|||+|||+.+++++|+++|++|| .|..+.+..+ +|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999988754 5899999999999999999999999999999999999
Q ss_pred Ccccc
Q 031850 128 NPANK 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 124
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-19 Score=114.88 Aligned_cols=80 Identities=30% Similarity=0.545 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999988754 689999999999999999999999999999999999
Q ss_pred CCcccc
Q 031850 127 RNPANK 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
.++..+
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 976543
No 125
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-18 Score=107.33 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
...+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999998764 5799999999999999998 5789999999999
Q ss_pred ecCCcccc
Q 031850 125 WGRNPANK 132 (152)
Q Consensus 125 ~a~~~~~~ 132 (152)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99976543
No 126
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=107.73 Aligned_cols=82 Identities=28% Similarity=0.468 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
...+.++|||+|||+.+++++|+++|+.|+.+..+.... .+|||||+|.+.++|++|+..|+|..|.|+.|+|.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345679999999999999999999999886443332221 15899999999999999999999999999999999999
Q ss_pred Ccccc
Q 031850 128 NPANK 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76544
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=9.8e-19 Score=112.34 Aligned_cols=78 Identities=18% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC---CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..+.|+.|.|.|+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 45689999999999999999999999999999998764 689999999999999999999999999999999999865
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=7.7e-19 Score=113.07 Aligned_cols=79 Identities=23% Similarity=0.411 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeE-----eEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-----VRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~-----l~v~~a~ 127 (152)
....+|||+|||+.+++++|+++|++||.|..+.+..+ |||||+|.+.++|++|++.|||..|.|+. |+|..+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45689999999999999999999999999999999877 99999999999999999999999999998 8888877
Q ss_pred Ccccc
Q 031850 128 NPANK 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
++...
T Consensus 93 ~~~~~ 97 (115)
T 3beg_B 93 PRSPS 97 (115)
T ss_dssp ----C
T ss_pred CCCCC
Confidence 65433
No 129
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=1.7e-18 Score=106.22 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
...++|||+|||+.+++++|+++|++| .|..+.+...+|+|||+|.+.++|++|+..|||..+.|+.|+|.++....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 356899999999999999999999999 99999887778999999999999999999999999999999999997654
No 130
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.78 E-value=1.5e-18 Score=112.75 Aligned_cols=79 Identities=27% Similarity=0.499 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
....++|||+|+ .+++++|+++|++||.|..+.+...+|||||+|.+.++|.+|+..|+|..+.|+.|+|.|++++..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 356789999995 699999999999999999999998899999999999999999999999999999999999997653
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 131
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=2.5e-18 Score=112.43 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC-CCCE-EEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEecC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 127 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~g~-afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~ 127 (152)
+.....|||+||++.+++++|+++|++||.|..+.+.. .+|+ |||+|.+.++|+.|++.|||..|.| +.|+|.|++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 34567899999999999999999999999999998764 4677 9999999999999999999999988 899999999
Q ss_pred Cccc
Q 031850 128 NPAN 131 (152)
Q Consensus 128 ~~~~ 131 (152)
+...
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 7753
No 132
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=2e-19 Score=113.07 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCC-e
Q 031850 53 SSNTTIFVGGLDP------NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK-Q 119 (152)
Q Consensus 53 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g-~ 119 (152)
...++|||+|||+ .+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468999999999 9999999999999999999998643 6999999999999999999999999999 9
Q ss_pred EeEEEecCCcc
Q 031850 120 SVRLSWGRNPA 130 (152)
Q Consensus 120 ~l~v~~a~~~~ 130 (152)
.|+|.++.+..
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998653
No 133
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=3e-18 Score=115.73 Aligned_cols=79 Identities=28% Similarity=0.530 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+..|++..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999998654 479999999999999999999999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87643
No 134
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=106.93 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEE-EeeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
...++|||+|||+.+++++|+++|++||.|..+ .++.+ .+.|||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 456899999999999999999999999999999 47665 356999999999999999999999999999999999976
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=108.92 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHhcccCCeEEEEeeC----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCe-E
Q 031850 52 DSSNTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-S 120 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~ 120 (152)
....++|||+|||+.+ ++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..|||..+.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3456899999999999 6799999999999999998874 379999999999999999999999999998 9
Q ss_pred eEEEecCCc
Q 031850 121 VRLSWGRNP 129 (152)
Q Consensus 121 l~v~~a~~~ 129 (152)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 136
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-18 Score=106.92 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=69.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEE-EEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.....+|||+|||+.+++++|+++|++||.|.. +.+..+ +|||||+|.+.++|++|+.. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 356789999999999999999999999999987 766543 79999999999999999986 99999999999999
Q ss_pred cCCcc
Q 031850 126 GRNPA 130 (152)
Q Consensus 126 a~~~~ 130 (152)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87543
No 137
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.6e-18 Score=104.35 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=67.3
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhcccC-CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTT-IFVGGLDPNVTDED----LRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
++..+ |||+|||+.+++++ |+++|++|| .|..| ..|+|||.|.+.++|++|++.|+|..+.|++|+|.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 34455 99999999999987 568999995 99888 2499999999999999999999999999999999999
Q ss_pred CCccccc
Q 031850 127 RNPANKQ 133 (152)
Q Consensus 127 ~~~~~~~ 133 (152)
+....-.
T Consensus 82 ~~~sd~~ 88 (96)
T 2diu_A 82 PKNRELC 88 (96)
T ss_dssp CCSCCCC
T ss_pred CCCccee
Confidence 9765443
No 138
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=3.4e-18 Score=109.02 Aligned_cols=79 Identities=25% Similarity=0.443 Sum_probs=68.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
.....++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..+ +..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999764 689999999999999999875 589999999999
Q ss_pred ecCCcc
Q 031850 125 WGRNPA 130 (152)
Q Consensus 125 ~a~~~~ 130 (152)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 139
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=109.40 Aligned_cols=75 Identities=17% Similarity=0.375 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
....+|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+. ++|..++|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45689999999999999999999999999999999863 7999999999999999998 89999999999999987
Q ss_pred C
Q 031850 128 N 128 (152)
Q Consensus 128 ~ 128 (152)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 140
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.3e-19 Score=107.69 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999998764 689999999999999999999999999999988775
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=1.6e-18 Score=118.22 Aligned_cols=100 Identities=22% Similarity=0.503 Sum_probs=84.7
Q ss_pred ccccCcccC---CcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcc
Q 031850 2 TEMNGVYCS---SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ 78 (152)
Q Consensus 2 ~~lng~~l~---Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 78 (152)
+.|||..+. ++++.+.++...... .....+|||+|||+.+++++|+++|++
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 65 NALHNMKVLPGMHHPIQMKPADSEKNN--------------------------AVEDRKLFIGMISKKCTENDIRVMFSS 118 (175)
T ss_dssp HHHTTTCCCTTCSSCCEEEECGGGCCS--------------------------CGGGSEEEEESCCTTCCHHHHHHHHGG
T ss_pred HHhcCcEEccCCccceEEccccccccc--------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHh
Confidence 457887776 678888776655322 235679999999999999999999999
Q ss_pred cCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeC---CeEeEEEecC
Q 031850 79 YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG---KQSVRLSWGR 127 (152)
Q Consensus 79 ~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~a~ 127 (152)
||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..+. +++|+|+||.
T Consensus 119 ~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999998765 689999999999999999999998876 4999999974
No 142
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=117.39 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC--CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
...+|||+|||+.+++++|+++|+.|| .|..+.++.+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999998754 58999999999999999999999999999999999
Q ss_pred cCCcc
Q 031850 126 GRNPA 130 (152)
Q Consensus 126 a~~~~ 130 (152)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98653
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.8e-18 Score=104.46 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCC-EEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g-~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
....+|||+|||+.+++++|+++|++||.|..|.+....+ ||||+|.+.++|.+|+. |+|..|.|+.|+|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3467999999999999999999999999999883333222 99999999999999999 999999999999999876543
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 144
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=3.6e-18 Score=115.66 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEecC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 127 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~ 127 (152)
+....+|||+||++.+++++|+++|++||.|..+.+... +|+|||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 345678999999999999999999999999999988643 5799999999999999999999999965 999999999
Q ss_pred Ccc
Q 031850 128 NPA 130 (152)
Q Consensus 128 ~~~ 130 (152)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 145
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.1e-18 Score=104.15 Aligned_cols=74 Identities=23% Similarity=0.517 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++ +++..++|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999998754 5899999999999999996 588999999999998
Q ss_pred c
Q 031850 126 G 126 (152)
Q Consensus 126 a 126 (152)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 146
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.3e-19 Score=109.18 Aligned_cols=76 Identities=26% Similarity=0.303 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
+...+|||+|||+.+++++|+++|++||.|..+.++. .+|+|||+|.+.++|++|+..|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3458999999999999999999999999887665543 2689999999999999999999999999999999998
Q ss_pred CC
Q 031850 127 RN 128 (152)
Q Consensus 127 ~~ 128 (152)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 147
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=110.37 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCe-EEEEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.....+|||+|||+.+++++|+++|+.||.| ..+.++. .+|||||+|.+.++|.+|+.. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3557899999999999999999999999999 7787765 379999999999999999986 99999999999999
Q ss_pred cCCcc
Q 031850 126 GRNPA 130 (152)
Q Consensus 126 a~~~~ 130 (152)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98664
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=106.32 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..+.++|||+|||+.+++++|+++|+.||.|..+ ... .+|+|||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4567899999999999999999999999988776 222 3689999999999999999999999999999999999876
Q ss_pred cc
Q 031850 130 AN 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 149
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=4.3e-18 Score=110.02 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC---eEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
....++|||+|||+.+++++|+++|+.||. |..+.+..+ +|||||+|.+.++|++|+. +++..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 788887653 6899999999999999998 9999999999999
Q ss_pred EecCCc
Q 031850 124 SWGRNP 129 (152)
Q Consensus 124 ~~a~~~ 129 (152)
.++.+.
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 150
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=7.1e-18 Score=102.98 Aligned_cols=72 Identities=22% Similarity=0.476 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 121 (152)
...++|||+|||+.+++++|+++|++| | .|..+.+..++|+|||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 456899999999999999999999999 8 8999999999999999999999999999 999999999999
Q ss_pred EEEe
Q 031850 122 RLSW 125 (152)
Q Consensus 122 ~v~~ 125 (152)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 151
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=104.84 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEE-----EeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-----KIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-----~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....+|||+|||+.+++++|+++|++||.|... .....+|||||+|.+.++|.+|++ |+|..+.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 3457899999999999999999999999976551 122348999999999999999998 9999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
+++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 152
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.75 E-value=2.4e-18 Score=123.37 Aligned_cols=81 Identities=27% Similarity=0.573 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCee------
Q 031850 52 DSSNTTIFVGGLDPNV---------TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI------ 116 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~------ 116 (152)
....++|||+||+..+ ++++|+++|++||.|..|.++.++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4567899999999998 6999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEeEEEecCCcccc
Q 031850 117 ------GKQSVRLSWGRNPANK 132 (152)
Q Consensus 117 ------~g~~l~v~~a~~~~~~ 132 (152)
.|+.|.|.||++.+..
T Consensus 211 e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TGGGGGGSCCCEEEECC-----
T ss_pred cccccCCCCEEEEEEccCCCCH
Confidence 8999999999866543
No 153
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=1.3e-17 Score=117.43 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=71.6
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 54 SNTTIFVGGLD-PNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 54 ~~~~l~v~nl~-~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
++++|||+||| +.+++++|+++|++||.|..++++.+ +|+|||+|.+.++|+.|++.|||..+.|+.|+|.+++.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 46899999999 89999999999999999999999875 799999999999999999999999999999999999743
No 154
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=1.4e-17 Score=102.43 Aligned_cols=76 Identities=36% Similarity=0.524 Sum_probs=62.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCe--eCCeEeEEEecCC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWGRN 128 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~a~~ 128 (152)
..+..+|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+ +++.. +.|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 456799999999999999999999999999999999865 8999999999999883 56665 4599999999997
Q ss_pred ccc
Q 031850 129 PAN 131 (152)
Q Consensus 129 ~~~ 131 (152)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.9e-18 Score=105.66 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....+|||+|||+.+++++|+++|++||.+ .+.++.+ +|||||+|.+.++|++|+. +|+..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3556899999999999999999999999954 8887654 6899999999999999995 7999999999999998
Q ss_pred CCcccc
Q 031850 127 RNPANK 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 1wez_A 90 STAGTS 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 866533
No 156
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=5.8e-19 Score=119.72 Aligned_cols=96 Identities=20% Similarity=0.410 Sum_probs=83.5
Q ss_pred CcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEE
Q 031850 6 GVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (152)
Q Consensus 6 g~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~ 85 (152)
+..|+|+.|.|.++.++... ....+|||+|||..+++++|+++|++||.|..+
T Consensus 65 ~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 65 QHILDGKVIDPKRAIPRDEQ---------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp CCEETTEECCCEECCCHHHH---------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred ccccCCeEcccccccchhhc---------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 46788999999887654211 235689999999999999999999999999999
Q ss_pred EeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 86 KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 86 ~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.+..+ +|+|||+|.+.++|.+|++ ++|..++|+.|.|.||.|+
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 98764 5899999999999999998 8999999999999999875
No 157
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=112.80 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEE-ee--C---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-IP--V---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~~--~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....+|||+|||+.+++++|+++|+.||.|..+. +. . .+|||||+|.+.++|.+|+. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4568999999999999999999999999886532 22 1 26899999999999999999 9999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8643
No 158
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.8e-18 Score=102.09 Aligned_cols=69 Identities=30% Similarity=0.527 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
+|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|++ ++|..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999988654 5899999999999999997 9999999999999886
No 159
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=8.7e-19 Score=107.84 Aligned_cols=74 Identities=31% Similarity=0.523 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.+ |.+|+..|||..+.|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999998754 689999999999 99999999999999999999999875
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 160
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.3e-18 Score=113.10 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=70.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCC---eEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 121 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 121 (152)
+......+|||+|||+.+++++|+++|++||. |..+.+..+ +|||||+|.+.++|++|+. +++..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999998 778887653 6899999999999999999 99999999999
Q ss_pred EEEecCCc
Q 031850 122 RLSWGRNP 129 (152)
Q Consensus 122 ~v~~a~~~ 129 (152)
+|.++.+.
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998754
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=112.49 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEee---CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIP---VGKGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~---~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
..+.++|||+|||+.+++++|+++|++||.|.. +.+. ..+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345689999999999999999999999998765 3222 34799999999999999999999999999999
Q ss_pred eEEEecCCcccc
Q 031850 121 VRLSWGRNPANK 132 (152)
Q Consensus 121 l~v~~a~~~~~~ 132 (152)
|.|.|+++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999875433
No 162
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=104.94 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=68.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
....+|||+|||+.+++++|+++|+.| .|..+.++.+ +|+|||+|.+.++|.+|+ .+++..|+|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 8999988753 799999999999999999 699999999999999887
Q ss_pred Ccc
Q 031850 128 NPA 130 (152)
Q Consensus 128 ~~~ 130 (152)
+..
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 163
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=102.73 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=63.4
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhcccCCeEEEEeeC----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCe-EeEE
Q 031850 55 NTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRL 123 (152)
Q Consensus 55 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v 123 (152)
+++|||+|||..+ ++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..|||..+.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 6799999999999999998874 379999999999999999999999999999 8876
No 164
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=100.84 Aligned_cols=70 Identities=26% Similarity=0.526 Sum_probs=65.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999988764 5899999999999999999988 9999999999987
No 165
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=107.78 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC---eEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
.....+|||+|||+.+++++|+++|+.||. |..+.+..+ +|+|||+|.+.++|.+|+. +++..++|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456789999999999999999999999987 888888753 6899999999999999998 9999999999999
Q ss_pred EecCCcc
Q 031850 124 SWGRNPA 130 (152)
Q Consensus 124 ~~a~~~~ 130 (152)
.++.+..
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9988643
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=3.3e-17 Score=115.77 Aligned_cols=78 Identities=32% Similarity=0.561 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+.++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999998754 589999999999999999999999999999999998
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=3.4e-17 Score=120.04 Aligned_cols=96 Identities=17% Similarity=0.408 Sum_probs=86.6
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|||..|.|++|+|.++. ...+|||+|||+.+++++|+++|+.||.
T Consensus 75 ~~l~~~~~~g~~i~v~~~~---------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 121 (284)
T 3smz_A 75 NAFHQSRLRERELSVQLQP---------------------------------TDALLCVANLPPSLTQQQFEELVRPFGS 121 (284)
T ss_dssp HHHTTCEETTEECEEEECC---------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCeeCCeEEEEEecC---------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCC
Confidence 4689999999999998721 2379999999999999999999999999
Q ss_pred eEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 82 IASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 82 v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+..
T Consensus 122 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 122 LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 999988653 5799999999999999999999999999999999998654
No 168
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=101.23 Aligned_cols=78 Identities=32% Similarity=0.504 Sum_probs=66.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCccc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 131 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 131 (152)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++++. ....+.|+.|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 45689999999999999999999999999999998765 8999999999999975432 13345899999999987654
Q ss_pred c
Q 031850 132 K 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 169
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=4e-17 Score=112.48 Aligned_cols=78 Identities=19% Similarity=0.411 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
...++|||+|||+.+++++|+++|++||.|..|.+..+ +|+|||+|.+.++|.+|+..|+|..|.|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999998763 6999999999999999999999999999999999998
Q ss_pred Ccc
Q 031850 128 NPA 130 (152)
Q Consensus 128 ~~~ 130 (152)
+..
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 170
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=8.8e-18 Score=120.20 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC--CeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..++|||+||++.+++++|+++|++|| .|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999998764 58999999999999999999999999999999999
Q ss_pred cCCc
Q 031850 126 GRNP 129 (152)
Q Consensus 126 a~~~ 129 (152)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9754
No 171
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.71 E-value=3e-17 Score=119.38 Aligned_cols=96 Identities=33% Similarity=0.496 Sum_probs=84.6
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 81 (152)
+.|||..|.|++|+|.++.+ ..+|||+|||..+++++|+++|+.||.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~---------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATH---------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp HHHTTCEETTEECEEEECCC---------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCcEECCceeEeeeccc---------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 46899999999999998642 468999999999999999999999999
Q ss_pred eEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhC-CCeeC---CeEeEEEecCCcc
Q 031850 82 IASVKIPVG-----KGCGFVQFANRENAEEALHKLN-GTVIG---KQSVRLSWGRNPA 130 (152)
Q Consensus 82 v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~-g~~~~---g~~l~v~~a~~~~ 130 (152)
|..+.+..+ +|+|||+|.+.++|.+|+..|+ |..+. +++|.|.++.+..
T Consensus 123 i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 123 VEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred eEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999988754 6899999999999999999995 44444 9999999998654
No 172
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-19 Score=113.40 Aligned_cols=81 Identities=31% Similarity=0.469 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeC
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG 117 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~ 117 (152)
..+.++|||+|||+.+++++|+++|++||.|.. +.+..+ +|||||+|.+.++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999988 767653 689999999999999999999999999
Q ss_pred CeEeEEEecCCcccc
Q 031850 118 KQSVRLSWGRNPANK 132 (152)
Q Consensus 118 g~~l~v~~a~~~~~~ 132 (152)
|+.|+|++++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999977544
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=1.4e-16 Score=107.60 Aligned_cols=77 Identities=34% Similarity=0.610 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCC------CEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
.++|||+|||+.+++++|+++|+.||.|..+.+..++ |+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999987653 8999999999999999999999999999999999987
Q ss_pred ccc
Q 031850 129 PAN 131 (152)
Q Consensus 129 ~~~ 131 (152)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.2e-16 Score=123.84 Aligned_cols=79 Identities=22% Similarity=0.449 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.+..+|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999998764 799999999999999999999999999999999999
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 175
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=1.3e-16 Score=117.34 Aligned_cols=96 Identities=14% Similarity=0.280 Sum_probs=85.2
Q ss_pred cccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC-C
Q 031850 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG-E 81 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~ 81 (152)
+|||..|.|++|+|.++ ...+|||+|||+.+++++|+++|+.|| .
T Consensus 99 ~~~~~~~~g~~i~v~~~----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 144 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHL----------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVV 144 (292)
T ss_dssp TTTTCEETTEECEEEEC----------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCC
T ss_pred HhCCcEeCCcEEEEEEC----------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCC
Confidence 48999999999999873 268999999999999999999999999 9
Q ss_pred eEEEEeeC-----CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccc
Q 031850 82 IASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (152)
Q Consensus 82 v~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (152)
|..+.+.. .+|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+....
T Consensus 145 i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 145 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred eEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99998865 3799999999999999999999999999999999999876543
No 176
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=2.4e-16 Score=114.58 Aligned_cols=78 Identities=31% Similarity=0.605 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
....++|||+|||+.+++++|+++|+.||.|..+.+.+++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 355689999999999999999999999999999999999999999999999999999999999999999999999864
No 177
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1.8e-17 Score=98.49 Aligned_cols=69 Identities=28% Similarity=0.637 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
+|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+. +++..+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999988653 6899999999999999998 5999999999999875
No 178
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.7e-17 Score=104.29 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
....++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+. ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999998763 5899999999999999997 999999999999999
Q ss_pred CCcc
Q 031850 127 RNPA 130 (152)
Q Consensus 127 ~~~~ 130 (152)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8654
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=2.1e-16 Score=107.07 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+.++|||+|||+.+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999988653 5899999999999999999999999999999999998
Q ss_pred Cccc
Q 031850 128 NPAN 131 (152)
Q Consensus 128 ~~~~ 131 (152)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7643
No 180
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.5e-17 Score=110.27 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEec
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 126 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 126 (152)
.....+|||+|||+.+++++|+++|++|| +..|.++.+ +|||||+|.+.++|++|+ .+++..|.|+.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 35568999999999999999999999999 668888754 789999999999999999 78999999999999998
Q ss_pred CCccc
Q 031850 127 RNPAN 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
.++..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=1.8e-16 Score=113.18 Aligned_cols=78 Identities=29% Similarity=0.520 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 52 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
.++.++|||+|||+ .+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..+.|+.|.|.++++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45678999999999 9999999999999999999999887 599999999999999999999999999999999999865
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-15 Score=97.56 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCC-----------HHHHHHHhcccCCeEEEEeeC--CCCEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 031850 52 DSSNTTIFVGGLDPNVT-----------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGK 118 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g 118 (152)
+.+..+|+|.||..... +++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|||..+.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45678999999954432 579999999999999997643 37999999999999999999999999999
Q ss_pred eEeEEEecCCcccc
Q 031850 119 QSVRLSWGRNPANK 132 (152)
Q Consensus 119 ~~l~v~~a~~~~~~ 132 (152)
+.|+|.|+.+....
T Consensus 92 r~l~v~~a~~~~~~ 105 (112)
T 2dit_A 92 RQITAQAWDGTTDY 105 (112)
T ss_dssp EECEEEECCSCCCS
T ss_pred cEEEEEEeCCCCCc
Confidence 99999999876543
No 183
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=7.5e-17 Score=105.17 Aligned_cols=76 Identities=32% Similarity=0.435 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeE--EEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
.....+|||+|||+.+++++|+++|++| .|. .|.++.+ +|||||+|.+.++|++|+. +++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 3456899999999999999999999999 677 7888754 7999999999999999998 58899999999999
Q ss_pred ecCCc
Q 031850 125 WGRNP 129 (152)
Q Consensus 125 ~a~~~ 129 (152)
.+.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.8e-16 Score=104.47 Aligned_cols=76 Identities=32% Similarity=0.575 Sum_probs=70.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999998764 4899999999999999999999999999999999998654
Q ss_pred c
Q 031850 131 N 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=8.5e-16 Score=112.47 Aligned_cols=80 Identities=24% Similarity=0.506 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhcccCCeEEEEeeC---CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
+..+.++|||+|||+.+++++|+ ++|+.||.|..|.+.+ .+|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34668999999999999999966 8999999999998875 4799999999999999999999999999999999
Q ss_pred EecCCcc
Q 031850 124 SWGRNPA 130 (152)
Q Consensus 124 ~~a~~~~ 130 (152)
.|++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9998654
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=100.08 Aligned_cols=84 Identities=20% Similarity=0.445 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC---------CCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~---------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
...++|||+|||+.+++++|+++|++||.|. +.++. .+|||||+|.+.++|++|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999998 66653 37999999999999999999884 478888877
Q ss_pred EecCCcccccCCCCCC
Q 031850 124 SWGRNPANKQASLSPF 139 (152)
Q Consensus 124 ~~a~~~~~~~~~~~~~ 139 (152)
..+.+...+.....||
T Consensus 83 ~~~~~~~~~~~~v~p~ 98 (114)
T 2dnl_A 83 VSSPTIKDKPVQIRPW 98 (114)
T ss_dssp ECCSSSCSEEEEEECC
T ss_pred ccCCCcCCCeeeccCC
Confidence 7665444333333444
No 187
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6e-16 Score=107.32 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 50 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
......++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 33456789999999999999999999999999999988754 57999999999999999975 999999999999
Q ss_pred EecCCcc
Q 031850 124 SWGRNPA 130 (152)
Q Consensus 124 ~~a~~~~ 130 (152)
.++.+..
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9998654
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.6e-15 Score=95.98 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhcccCCeEEEEeeCC-------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 53 SSNTTIFVGGLDP-----NVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 53 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
.++++|+|.|+.. ..++++|++.|++||.|..+.++.+ +|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2367899999999999999988642 689999999999999999999999999999
Q ss_pred eEEEecCCc
Q 031850 121 VRLSWGRNP 129 (152)
Q Consensus 121 l~v~~a~~~ 129 (152)
|.|.|+.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999754
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=6.6e-16 Score=107.56 Aligned_cols=77 Identities=30% Similarity=0.520 Sum_probs=72.1
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcc
Q 031850 54 SNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 130 (152)
Q Consensus 54 ~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 130 (152)
..++|||+|||+ .+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 358999999999 9999999999999999999999877 5999999999999999999999999999999999998653
No 190
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=104.22 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCe----EEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 123 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (152)
....+|||+|||+.+++++|+++|++||.| ..|.++.+ +|||||+|.+.++|++|+.. ++..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999875 56766542 68999999999999999985 999999999999
Q ss_pred EecCCc
Q 031850 124 SWGRNP 129 (152)
Q Consensus 124 ~~a~~~ 129 (152)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=1.7e-15 Score=102.93 Aligned_cols=76 Identities=21% Similarity=0.441 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
+.++|||+|||+.+++++|+++|++| | .|..+.+..++|+|||+|.+.++|.+|+ .++|..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 7888989999999999999999999999 8999999999999
Q ss_pred EEecCCcc
Q 031850 123 LSWGRNPA 130 (152)
Q Consensus 123 v~~a~~~~ 130 (152)
|.++.+..
T Consensus 82 v~~~~~~~ 89 (172)
T 2g4b_A 82 IRRPHDYQ 89 (172)
T ss_dssp EECCSSCC
T ss_pred ecCCcccC
Confidence 99987553
No 192
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=2.1e-15 Score=105.99 Aligned_cols=77 Identities=25% Similarity=0.526 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
..++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4579999999999999999999999999999998653 7999999999999999999999999999999999987
Q ss_pred Ccc
Q 031850 128 NPA 130 (152)
Q Consensus 128 ~~~ 130 (152)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 553
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=3.6e-15 Score=103.47 Aligned_cols=75 Identities=20% Similarity=0.431 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
..++|||+|||+.+++++|+++|+.| | .|..+.+..++|+|||+|.+.++|.+|+ .|+|..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 5 7888888888999999999999999999 8999999999999
Q ss_pred EEecCCc
Q 031850 123 LSWGRNP 129 (152)
Q Consensus 123 v~~a~~~ 129 (152)
|.++.+.
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998765
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=3.7e-15 Score=103.98 Aligned_cols=75 Identities=17% Similarity=0.365 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
..++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..+ +..++|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3579999999999999999999999999999988753 699999999999999999755 5699999999999875
Q ss_pred c
Q 031850 129 P 129 (152)
Q Consensus 129 ~ 129 (152)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2e-15 Score=97.72 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=64.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCC----HHH----HHHHHH--HhCCCe
Q 031850 56 TTIFVGGL----DPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN----REN----AEEALH--KLNGTV 115 (152)
Q Consensus 56 ~~l~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~----~~~----a~~a~~--~l~g~~ 115 (152)
..|||+|| |+.+++.+|+.+|+.||.|..+.++.| +|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999998865 6999999996 333 788888 789999
Q ss_pred eCCeEeEEEecCCc
Q 031850 116 IGKQSVRLSWGRNP 129 (152)
Q Consensus 116 ~~g~~l~v~~a~~~ 129 (152)
|+|+.|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997643
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=3.8e-15 Score=101.31 Aligned_cols=77 Identities=27% Similarity=0.500 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeC--------CCCEEEEEeCCHHHHHHHHHHhCCCeeC---CeEeE
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--------GKGCGFVQFANRENAEEALHKLNGTVIG---KQSVR 122 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~--------~~g~afv~f~~~~~a~~a~~~l~g~~~~---g~~l~ 122 (152)
..++|||+|||+.+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 467999999999999999999999999999998864 3579999999999999999999998875 67888
Q ss_pred EEecCCcc
Q 031850 123 LSWGRNPA 130 (152)
Q Consensus 123 v~~a~~~~ 130 (152)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877543
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=9.1e-15 Score=109.84 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=68.8
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeC---Ce--EeEEE
Q 031850 52 DSSNTTIFVGG--LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG---KQ--SVRLS 124 (152)
Q Consensus 52 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~---g~--~l~v~ 124 (152)
+.++.+|||+| |++.+++++|+++|++||.|..+.+..++|||||+|.+.++|++|++.|||..+. |+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 46788999999 5788999999999999999999999889999999999999999999999999972 45 68888
Q ss_pred ecC
Q 031850 125 WGR 127 (152)
Q Consensus 125 ~a~ 127 (152)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 885
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=1.7e-14 Score=98.34 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCe-----EEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-----ASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-----~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
.....++|||+|||+.+++++|+++|..||.+ ........+|+|||+|.+.++|.+|++ |+|..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 34567999999999999999999999998754 333344568999999999999999995 999999999999999
Q ss_pred cCCccc
Q 031850 126 GRNPAN 131 (152)
Q Consensus 126 a~~~~~ 131 (152)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 986543
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=1e-14 Score=98.61 Aligned_cols=75 Identities=23% Similarity=0.535 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC------CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+. ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 4689999999999999999999999999999998764 5899999999999999998 4678999999999988
Q ss_pred Ccc
Q 031850 128 NPA 130 (152)
Q Consensus 128 ~~~ 130 (152)
+..
T Consensus 80 ~~~ 82 (167)
T 2cjk_A 80 PRD 82 (167)
T ss_dssp CHH
T ss_pred chh
Confidence 654
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=3.2e-14 Score=89.95 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=66.2
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHhcccCCeEEEEeeCC--------CCEEEEEeCCHHHHHHHHHHhCCC
Q 031850 53 SSNTTIFVGGL--DPNVT--------DEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGT 114 (152)
Q Consensus 53 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~--------~g~afv~f~~~~~a~~a~~~l~g~ 114 (152)
.+++.|.|.|+ |.... .++|++.|++||.|..+.++++ +|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35688999998 33333 2689999999999999999753 699999999999999999999999
Q ss_pred eeCCeEeEEEecCCc
Q 031850 115 VIGKQSVRLSWGRNP 129 (152)
Q Consensus 115 ~~~g~~l~v~~a~~~ 129 (152)
.++|+.|+|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998743
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.6e-13 Score=83.78 Aligned_cols=66 Identities=20% Similarity=0.350 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHhcccCCeEEEEee-CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCcccc
Q 031850 65 PNVTDEDLRQPFSQYGEIASVKIP-VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 132 (152)
Q Consensus 65 ~~~~~~~l~~~f~~~g~v~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 132 (152)
..+++++|+++|++||.|..+.++ ..+|||||+|.+.++|..|+..++ .+.|++|+|.|++++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCC
Confidence 458999999999999999999987 458999999999999999998744 468999999999876533
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=1.2e-13 Score=88.95 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCC--C---CHHHHHHHhcccCCeEEEEeeCC----------CCEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 031850 54 SNTTIFVGGLDPN--V---TDEDLRQPFSQYGEIASVKIPVG----------KGCGFVQFANRENAEEALHKLNGTVIGK 118 (152)
Q Consensus 54 ~~~~l~v~nl~~~--~---~~~~l~~~f~~~g~v~~~~~~~~----------~g~afv~f~~~~~a~~a~~~l~g~~~~g 118 (152)
++++|+|.|+-.. + -+++|++.|++||.|..+.++.+ +|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999998422 2 25789999999999999988753 3899999999999999999999999999
Q ss_pred eEeEEEecCC
Q 031850 119 QSVRLSWGRN 128 (152)
Q Consensus 119 ~~l~v~~a~~ 128 (152)
+.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=1.2e-14 Score=91.84 Aligned_cols=67 Identities=25% Similarity=0.486 Sum_probs=58.1
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeEEEEeeCC-----CCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 60 VGGLDPNVTDEDLRQPF------------SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 60 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
+.+|++.+++++|++.| ++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777766665 99999999999864 69999999999999999999999999999999
Q ss_pred EEec
Q 031850 123 LSWG 126 (152)
Q Consensus 123 v~~a 126 (152)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=3.5e-13 Score=86.28 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCCCC----------HHHHHHHhcccCCeEEEEeeCC--CCEEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 031850 53 SSNTTIFVGGLDPNVT----------DEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQS 120 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 120 (152)
.+++.|.+.|+-..-. +++|++.|++||.|..+.+.++ +|++||+|.+.++|.+|+..|||..++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3567888988833221 2478999999999999999775 699999999999999999999999999999
Q ss_pred eEEEecCCc
Q 031850 121 VRLSWGRNP 129 (152)
Q Consensus 121 l~v~~a~~~ 129 (152)
|.|.|+...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998743
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-12 Score=78.32 Aligned_cols=74 Identities=26% Similarity=0.404 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 031850 53 SSNTTIFVGGLDP----NVTD----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 124 (152)
Q Consensus 53 ~~~~~l~v~nl~~----~~~~----~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (152)
++..||+|.-.+. ..-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |+|..++|+.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 5678888887762 2223 5788999999999999999655 8999999999999998 99999999999999
Q ss_pred ecCCc
Q 031850 125 WGRNP 129 (152)
Q Consensus 125 ~a~~~ 129 (152)
+++|.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98864
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.2e-12 Score=81.70 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCC-HHHHHHHHHHhC--CCeeCCeEeEEEec
Q 031850 51 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN-RENAEEALHKLN--GTVIGKQSVRLSWG 126 (152)
Q Consensus 51 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--g~~~~g~~l~v~~a 126 (152)
.-++++.|||+||+.. ++.++|+++|++||.|..|.+..+...|||.|.+ ..+|..|+..|+ +..|.|..++++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3467899999999999 9999999999999999999999998899999999 899999999994 77788988888765
Q ss_pred C
Q 031850 127 R 127 (152)
Q Consensus 127 ~ 127 (152)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.3e-11 Score=73.08 Aligned_cols=74 Identities=26% Similarity=0.431 Sum_probs=62.8
Q ss_pred CCCCceEEEcCCCCC------CCH---HHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 031850 52 DSSNTTIFVGGLDPN------VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 122 (152)
Q Consensus 52 ~~~~~~l~v~nl~~~------~~~---~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (152)
.++..||+|.-++.. ..+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |+|..++|+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 366789999888643 332 4688999999999999999665 9999999999999998 999999999999
Q ss_pred EEecCC
Q 031850 123 LSWGRN 128 (152)
Q Consensus 123 v~~a~~ 128 (152)
|.+..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 988653
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=6.3e-10 Score=78.72 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCHHHHHHHhcccCCeEEEEee----------CCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCC
Q 031850 67 VTDEDLRQPFSQYGEIASVKIP----------VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 128 (152)
Q Consensus 67 ~~~~~l~~~f~~~g~v~~~~~~----------~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 128 (152)
-.+++|++.|++||.|..+.+. ..+|++||+|.+.++|.+|+..|||..++||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3457899999999999999886 2368999999999999999999999999999999999763
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.6e-08 Score=63.08 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccc-----CCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 125 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (152)
..++|-+-|||-.+++..|+.+.+++ |.+.++.+..+.+-|+|+|.+...|.+|.-.|+|..|.|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 36788999999999999999999999 9999999999999999999999999999888999999999999854
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=3.6e-07 Score=56.63 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=65.7
Q ss_pred CceEEEcCCCCCC-CH----HHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecCCc
Q 031850 55 NTTIFVGGLDPNV-TD----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 55 ~~~l~v~nl~~~~-~~----~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 129 (152)
..+|+|.||+..+ .. +.++++|..|++.......++-.-..|.|.+.++|.+|-..|++..+.|+.++|.|+.+-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4689999998863 32 467899999998888888887778899999999999999999999999999999999855
Q ss_pred c
Q 031850 130 A 130 (152)
Q Consensus 130 ~ 130 (152)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=9.4e-05 Score=45.65 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc---c--CCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQ---Y--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~---~--g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
....+|.|.|||..++++.|.-+|+. - |.|..+.... +-|+|+|.+.+.|++.++ -.-+.|.+..|.|.-..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 45689999999999999999999976 2 3778877764 899999999999999986 24678999999997654
Q ss_pred Cc
Q 031850 128 NP 129 (152)
Q Consensus 128 ~~ 129 (152)
+.
T Consensus 83 ~~ 84 (104)
T 2dhx_A 83 PR 84 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 212
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.87 E-value=2.4e-06 Score=54.11 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=20.4
Q ss_pred CccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHH
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDED 71 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 71 (152)
|+.|||..|+||+|+|.++.++....... ........+|||+|||+.+|++.
T Consensus 62 i~~l~~~~~~g~~i~V~~a~~~~~~~~~~-------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 62 IEKMNGMLLNDRKVFVGRFKSRKEREAEL-------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHTTCEETTEECEEEESSCCCC-----------------------------------------------
T ss_pred HHHcCCCEECCEEEEEEECCCcccccccc-------------------ccccCCCCceEeCCCCCCccccc
Confidence 35799999999999999988765332110 11123446799999999998764
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00028 Score=42.74 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeeCCe-----EeE
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGKQ-----SVR 122 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--------~g~afv~f~~~~~a~~a~~~l~g~~~~g~-----~l~ 122 (152)
.+|.|.+||+.++++++.+.++....+....+..+ ..-|||.|.+.+++....+.++|+.+-+. .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47899999999999999999998887776666432 36799999999999999999999997322 334
Q ss_pred EEecC
Q 031850 123 LSWGR 127 (152)
Q Consensus 123 v~~a~ 127 (152)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00049 Score=43.67 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCC-eEeEEEecCCc
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-QSVRLSWGRNP 129 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~~~ 129 (152)
....-|.|-+.|... ...+...|++||.|.+........+..|.|.+..+|++||. .||..|+| --|-|..+..+
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCH
Confidence 346788899999885 46677789999999998776567899999999999999996 69999985 66777776533
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.64 E-value=0.00028 Score=43.08 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=45.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhC
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 112 (152)
...+-++| ++|...-..||.++|+.||. ..|.++. -..|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 44566666 99999999999999999983 3344443 3699999999999999998763
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00076 Score=41.27 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhC
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 112 (152)
+-++| ++|...-..+|..+|+.|| -..|.++. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 45566 9999999999999999998 45556654 3689999999999999998764
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.05 E-value=0.0028 Score=38.67 Aligned_cols=74 Identities=11% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCC--------CCEEEEEeCCHHHHHHHHHHhCCCeeCCe-----E
Q 031850 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIGKQ-----S 120 (152)
Q Consensus 54 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--------~g~afv~f~~~~~a~~a~~~l~g~~~~g~-----~ 120 (152)
...+|.|..||+.+|++++.+.+...-.+....+..+ -.-|||.|.+.++.....+.++|..+-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3568999999999999998888776545443333221 36799999999999999999999987322 4
Q ss_pred eEEEecC
Q 031850 121 VRLSWGR 127 (152)
Q Consensus 121 l~v~~a~ 127 (152)
-.|+||-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566654
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.95 E-value=0.00089 Score=43.11 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=54.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEE-EEee-------------------CCCCEEEEEeCCHHHHHHHHHHhCCC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIP-------------------VGKGCGFVQFANRENAEEALHKLNGT 114 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~-------------------~~~g~afv~f~~~~~a~~a~~~l~g~ 114 (152)
...|.|-+.|..... .+.+.|++||.|.+ .... .+..+..|.|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456777788776654 45567899998866 2111 135678999999999999996 7999
Q ss_pred eeCCeEeEEEecCCc
Q 031850 115 VIGKQSVRLSWGRNP 129 (152)
Q Consensus 115 ~~~g~~l~v~~a~~~ 129 (152)
.|+|.-|-|....+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999998888887643
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.91 E-value=0.00065 Score=52.87 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=42.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCC-EEEEEeCCHHHHHHHHH
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALH 109 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g-~afv~f~~~~~a~~a~~ 109 (152)
.+.|+|. .|..+++.+|.++|++||+|..+.+..++| ||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4789997 799999999999999999999999988876 79999999999887654
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.84 E-value=0.00035 Score=42.71 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.0
Q ss_pred ccccCcccCCcceEEeecCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKS 24 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~ 24 (152)
+.|||..|.|++|+|.++.++..
T Consensus 55 ~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 55 RGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp HHHHHSCSSSCCCEEEESSSCCC
T ss_pred HHHCCCeECCcEEEEEEccCCCC
Confidence 46899999999999999988753
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.83 E-value=0.0028 Score=41.49 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=35.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEEecCCc
Q 031850 91 KGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRNP 129 (152)
Q Consensus 91 ~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~~~ 129 (152)
+|+++|+|.+.++|++|++.+ ||..++| .+.+.++...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 689999999999999999999 9999999 9999998753
No 222
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.11 E-value=0.0051 Score=37.45 Aligned_cols=26 Identities=4% Similarity=-0.024 Sum_probs=22.5
Q ss_pred CccccCcccCCcceEEeecCCCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSSG 26 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~~ 26 (152)
++.|||..|+||+|+|++|..++..-
T Consensus 63 ~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 63 QKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp HHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred HHHhcCCccCCceEEEEecCCCccee
Confidence 36799999999999999999887653
No 223
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.73 E-value=0.0014 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.2
Q ss_pred ccccCcccCCcceEEeecCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 80 (152)
+.|||..|.|++|+|.++.++... .+++...++++|.++|++||
T Consensus 65 ~~l~g~~~~g~~l~v~~a~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 65 DHLSGFNVSNRYLVVLYYNANRAF-----------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp HHHTTCBSSSCBCEEEECCHHHHT-----------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEECCeEEEEEEecCChhh-----------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 468999999999999998765321 34556678899999999998
No 224
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.48 E-value=0.03 Score=33.99 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.8
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 63 ~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 63 EEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHCCCccCCCEEEEEEcCCCccc
Confidence 468999999999999999887644
No 225
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.13 E-value=0.042 Score=33.92 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.0
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCCCC
T ss_pred HHhCCCEECCEEEEEEEccCCCCC
Confidence 569999999999999999987654
No 226
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.50 E-value=0.036 Score=36.29 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCe
Q 031850 90 GKGCGFVQFANRENAEEALHKLNGTV 115 (152)
Q Consensus 90 ~~g~afv~f~~~~~a~~a~~~l~g~~ 115 (152)
.+|++||+|.+.++|++|+..+++..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccC
Confidence 37999999999999999998887544
No 227
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.37 E-value=0.037 Score=32.88 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=20.9
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 65 ~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 65 EQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HHHTTCCSSSSCCEEEESSCCCCC
T ss_pred HHhCCCeeCCcEEEEEEcccccCC
Confidence 468999999999999999887654
No 228
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.34 E-value=0.042 Score=32.91 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 68 AEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HHTTTEESSSCEEEEEECCCCSTT
T ss_pred HHhCCCEECCcEEEEEEcCCCccc
Confidence 579999999999999999987654
No 229
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.038 Score=32.56 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=20.9
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 60 ~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 60 RNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HHHTTCBCSSCBCEEECSSCCCCC
T ss_pred HHhcCCccCCcEEEEEECCCCCCC
Confidence 468999999999999999887654
No 230
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.22 E-value=0.045 Score=32.52 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.8
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 66 ~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 66 EAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp HTTTTCEETTEECEEEESCCCCCC
T ss_pred HHcCCCEECCEEEEEEEecccCCC
Confidence 569999999999999999887644
No 231
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=93.19 E-value=0.071 Score=33.19 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 66 ~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 66 KDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHCSSCBCSSSBCEEEECCCSSCS
T ss_pred HHhCCCEECCEEEEEEECCCCCCC
Confidence 569999999999999999876543
No 232
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.90 E-value=0.04 Score=32.60 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.8
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHhCCCeeCCcEEEEEEccCCCCC
Confidence 568999999999999999887544
No 233
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.74 E-value=0.041 Score=32.44 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.6
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCCCC
Confidence 568999999999999999887543
No 234
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.61 E-value=0.046 Score=32.38 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.6
Q ss_pred ccccC-cccCCcceEEeecCCCCCC
Q 031850 2 TEMNG-VYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng-~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.||| ..|.|++|+|.++.++...
T Consensus 62 ~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 62 ETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHccCCeeECCEEEEEEEccCcccc
Confidence 56899 9999999999999887544
No 235
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.07 E-value=0.064 Score=32.38 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=20.4
Q ss_pred ccccCcc-cCCcceEEeecCCCCCC
Q 031850 2 TEMNGVY-CSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~-l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||.. |.|++|+|.++.++...
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HHccCCcccCCEeEEEEEccCCCcC
Confidence 4699999 99999999999876544
No 236
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.50 E-value=0.1 Score=31.88 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.1
Q ss_pred CccccCcccCC-----cceEEeecCCCCCC
Q 031850 1 MTEMNGVYCSS-----RPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~~l~G-----r~i~v~~a~~~~~~ 25 (152)
|+.|||..|.| ++|+|.++.++...
T Consensus 67 i~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 67 VRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp HHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred HHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 35699999999 99999999987544
No 237
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.26 E-value=0.16 Score=31.12 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.9
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++......
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHTTCEETTEECEEEECSCCCCC
T ss_pred HHhCCCEeCCCEEEEEEcccCCCC
Confidence 468999999999999998765433
No 238
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.02 E-value=1.3 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=44.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhC
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 112 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 112 (152)
...++|+ +|..+...+|.++|+.||. ..|.+. +...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 4566665 8888889999999999995 344444 35689999999999999999885
No 239
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.92 E-value=0.054 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=17.3
Q ss_pred CccccCcccCCcceEEeecCCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
++.|||..|+|++|+|.+|.+....
T Consensus 59 ~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 59 IAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp HHTSCSSCCSSSSCSEEEC------
T ss_pred HHHhCCCEECCeEEEEEEcCCCCCC
Confidence 3579999999999999999887543
No 240
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=90.68 E-value=0.051 Score=32.47 Aligned_cols=23 Identities=0% Similarity=-0.058 Sum_probs=19.8
Q ss_pred ccccCcccCCcceEEeecCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKS 24 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~ 24 (152)
+.|||..|.|++|+|.++..+..
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCCC
T ss_pred HHcCCCeeCCcEEEEEEcCcCCC
Confidence 46899999999999999987653
No 241
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=90.10 E-value=0.066 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.7
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|+|++|+|.++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 62 RNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp HHHTTCEETTEECEEEECSCSSGG
T ss_pred HHhCCCeECCeEEEEEEcCCCCCC
Confidence 468999999999999999887543
No 242
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.69 E-value=0.11 Score=31.18 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.6
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 68 RNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHhCCCeeCCcEEEEEeCCCccch
Confidence 469999999999999999877543
No 243
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=89.56 E-value=0.084 Score=33.10 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.6
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.++...
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHhCCCeeCCeEEEEEEecCCCCC
Confidence 468999999999999999876544
No 244
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=89.35 E-value=0.15 Score=29.84 Aligned_cols=22 Identities=0% Similarity=-0.016 Sum_probs=19.2
Q ss_pred ccccCcccCCcceEEeecCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~ 23 (152)
+.|||..|.|++|+|.++....
T Consensus 58 ~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 58 QMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHTTEEETTEEEEEEECCCCC
T ss_pred HHhCCCeECCcEEEEEEcCCCc
Confidence 4699999999999999987654
No 245
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.33 E-value=0.16 Score=30.00 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=19.1
Q ss_pred CccccCcccCCcceEEeecCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~ 24 (152)
|+ |||..|+|++|+|.++..+..
T Consensus 62 i~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 62 LS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp HT-CSCCEETTEECCCBCSCCSCC
T ss_pred Hh-cCCeEECCEEEEEEECCcCCC
Confidence 35 999999999999998876543
No 246
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=88.90 E-value=0.07 Score=33.01 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred CccccCcccCCcceEEeecCCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
|+.|||..|.|++|+|.++.++...
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 74 IDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4679999999999999999887544
No 247
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.18 E-value=0.45 Score=28.73 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=20.1
Q ss_pred Ccccc--CcccCCcceEEeecCCCCCC
Q 031850 1 MTEMN--GVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~ln--g~~l~Gr~i~v~~a~~~~~~ 25 (152)
|+.|| +..|.|++|+|.++.++...
T Consensus 69 ~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 69 RRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp HTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred HHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 35685 59999999999999887543
No 248
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=89.06 E-value=0.085 Score=32.59 Aligned_cols=23 Identities=0% Similarity=-0.054 Sum_probs=19.5
Q ss_pred CccccCcccCCcceEEeecCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~ 23 (152)
|+.|||..|.||+|+|.++....
T Consensus 65 i~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 65 VKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHTTCEETTEECEEEECSTTH
T ss_pred HHHhCCCEECCeEEEEEECCCCc
Confidence 35799999999999999987653
No 249
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.01 E-value=0.52 Score=28.88 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=18.4
Q ss_pred CccccCcccCCcceEEeecCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~ 23 (152)
|+.||+ .|.|++|+|.++....
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTTC
T ss_pred HHhCCC-cCCCEEEEEEEcccCC
Confidence 467888 8999999999997654
No 250
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=88.71 E-value=0.29 Score=30.94 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=20.7
Q ss_pred CccccCc----ccCCcceEEeecCCCCCC
Q 031850 1 MTEMNGV----YCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 1 i~~lng~----~l~Gr~i~v~~a~~~~~~ 25 (152)
|+.|||. .|.||+|+|.++.++...
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 3578999 999999999999876543
No 251
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.38 E-value=0.079 Score=31.73 Aligned_cols=19 Identities=5% Similarity=0.069 Sum_probs=17.1
Q ss_pred CccccCcccCCcceEEeec
Q 031850 1 MTEMNGVYCSSRPMRIGAA 19 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a 19 (152)
|+.|||..|.||+|+|+.|
T Consensus 60 i~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 60 QMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHTTEEETTEEEEEECC
T ss_pred HHHhcCCEECCcEEEEEEC
Confidence 3579999999999999988
No 252
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=87.70 E-value=0.1 Score=32.63 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=18.8
Q ss_pred CccccCcccCCcceEEeecCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPR 22 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~ 22 (152)
|+.|||.+++||+|+|.++...
T Consensus 72 i~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 72 VNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHTTCEETTEECEEEEECHH
T ss_pred HHHhCCCEECCEEEEEEEEcHH
Confidence 3579999999999999998643
No 253
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.38 E-value=0.21 Score=30.73 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=19.7
Q ss_pred CccccCcccCCcceEEeecCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRK 23 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~ 23 (152)
|+.|||..|.|++|+|.++....
T Consensus 63 i~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 63 FRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHhCCCEECCeEEEEEECCCCc
Confidence 35799999999999999987654
No 254
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=86.87 E-value=0.44 Score=31.77 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=19.6
Q ss_pred CccccCcccCC--cceEEeecCCCC
Q 031850 1 MTEMNGVYCSS--RPMRIGAATPRK 23 (152)
Q Consensus 1 i~~lng~~l~G--r~i~v~~a~~~~ 23 (152)
|+.|||..|.| ++|+|.++.++.
T Consensus 101 i~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 101 KLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHhCCCEecCCCcEEEEEEecCCc
Confidence 35799999966 999999999874
No 255
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=85.67 E-value=0.24 Score=32.20 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.7
Q ss_pred ccccCcccCCcceEEeecCCCCCC
Q 031850 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 2 ~~lng~~l~Gr~i~v~~a~~~~~~ 25 (152)
+.|||..|.|++|+|.++.+....
T Consensus 99 ~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 99 RYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp HHTTTSEETTEECEEEEESCCCTT
T ss_pred HHhCCCEECCeEEEEEECCCCCCc
Confidence 569999999999999999876544
No 256
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.99 E-value=0.28 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.1
Q ss_pred CccccCcccCC--cceEEeecCCCCC
Q 031850 1 MTEMNGVYCSS--RPMRIGAATPRKS 24 (152)
Q Consensus 1 i~~lng~~l~G--r~i~v~~a~~~~~ 24 (152)
|+.|||..|.| ++|+|.++.++..
T Consensus 79 ~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 79 KAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp HHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred HHHhCCCEecCCCeEEEEEEecCCcc
Confidence 35799999998 6999999988753
No 257
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.71 E-value=0.44 Score=29.04 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.7
Q ss_pred cccC--cccCCcceEEeecCCCCCC
Q 031850 3 EMNG--VYCSSRPMRIGAATPRKSS 25 (152)
Q Consensus 3 ~lng--~~l~Gr~i~v~~a~~~~~~ 25 (152)
.|++ ..|.||+|+|.++..+...
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HhccCCceECCEEEEEEEccCcccc
Confidence 4554 4699999999999887544
No 258
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=83.36 E-value=0.54 Score=30.07 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.5
Q ss_pred CccccCcccCC--cceEEeecCCCCC
Q 031850 1 MTEMNGVYCSS--RPMRIGAATPRKS 24 (152)
Q Consensus 1 i~~lng~~l~G--r~i~v~~a~~~~~ 24 (152)
|+.|||..|.| ++|+|+++.+..-
T Consensus 83 i~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 83 KLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHcCCCeecCCCcEEEEEecCCCce
Confidence 35799999999 9999999988753
No 259
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=79.98 E-value=0.67 Score=32.41 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=18.5
Q ss_pred CccccCcccCCcceEEeecCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATP 21 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~ 21 (152)
|+.|||..|.||+|+|.++..
T Consensus 129 i~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 129 MDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp HTTSTTSCBTTBCCEEEECCH
T ss_pred HHHcCCCeECCEEeEEEECCC
Confidence 467999999999999998764
No 260
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.39 E-value=6.3 Score=22.07 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCHHHHHHHhcccC-----CeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEecC
Q 031850 67 VTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 127 (152)
Q Consensus 67 ~~~~~l~~~f~~~g-----~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 127 (152)
+...+|..++..-+ .|-.+.+. ..+.||+-.. ..+..++..|++..+.|+.+.|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 56667777766433 45566665 4588888775 45777888899999999999988764
No 261
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=78.19 E-value=0.97 Score=27.75 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=16.1
Q ss_pred CccccCcccCCcc-----eEEeecCCCC
Q 031850 1 MTEMNGVYCSSRP-----MRIGAATPRK 23 (152)
Q Consensus 1 i~~lng~~l~Gr~-----i~v~~a~~~~ 23 (152)
|+.|||.+|.|++ |+|..+.+..
T Consensus 68 i~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 68 VRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp HHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred HHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 3569999999999 7777666543
No 262
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=75.81 E-value=2.4 Score=32.67 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.6
Q ss_pred CccccCcccCCcceEEeecCCCCC
Q 031850 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (152)
Q Consensus 1 i~~lng~~l~Gr~i~v~~a~~~~~ 24 (152)
|+.|||..|.|++|.|.++.....
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCCCC
Confidence 457999999999999999987643
No 263
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=75.26 E-value=1.1 Score=27.71 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=17.1
Q ss_pred ccCcccCCcceEEeecCCC
Q 031850 4 MNGVYCSSRPMRIGAATPR 22 (152)
Q Consensus 4 lng~~l~Gr~i~v~~a~~~ 22 (152)
|||..|+||.|+|.++..+
T Consensus 80 ~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 80 KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp GTTEEETTEEEEEEEECHH
T ss_pred cCCCeECCeEEEEEECCHH
Confidence 8999999999999998654
No 264
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.89 E-value=2 Score=26.60 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.3
Q ss_pred cccCcccCCcceEEeecCCC
Q 031850 3 EMNGVYCSSRPMRIGAATPR 22 (152)
Q Consensus 3 ~lng~~l~Gr~i~v~~a~~~ 22 (152)
.|||..|+||+|+|.++..+
T Consensus 85 ~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 85 CRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp TSCSBCSTTSCBEEEEECHH
T ss_pred HhCCCeECCcEEEEEECCHH
Confidence 37999999999999998654
No 265
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=52.40 E-value=34 Score=20.26 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=52.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHHhCCC-------eeCCeEeEEEe
Q 031850 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-------VIGKQSVRLSW 125 (152)
Q Consensus 53 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~-------~~~g~~l~v~~ 125 (152)
...+.|-|-|+|..+-..++--.....|---.|... .|-|++.|.+.++...|+..|-.+ .+.|....|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvis 87 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVIS 87 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEEC
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeee
Confidence 346788899999998887776666677754555554 689999999999999999877322 14566555544
Q ss_pred cC
Q 031850 126 GR 127 (152)
Q Consensus 126 a~ 127 (152)
..
T Consensus 88 ti 89 (129)
T 4eyt_A 88 TI 89 (129)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 266
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.13 E-value=33 Score=18.31 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=41.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCCHHHHHHHHHH
Q 031850 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 110 (152)
Q Consensus 55 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~~~~a~~a~~~ 110 (152)
..++.|.++.=.--...++..+.. ..|..+.+....+-+.|.|.+.+....+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 456788888766666788888888 8888888876667888888855666666654
No 267
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=42.18 E-value=6 Score=25.68 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=17.2
Q ss_pred HHHHHhcccCCeEEEEeeCCCCEEEEEeC
Q 031850 71 DLRQPFSQYGEIASVKIPVGKGCGFVQFA 99 (152)
Q Consensus 71 ~l~~~f~~~g~v~~~~~~~~~g~afv~f~ 99 (152)
++.++|...|.|++.. ..+||+||...
T Consensus 3 ~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred cccccccceeEEEEEE--CCCCeeEEeeC
Confidence 4456677777776643 34899999875
No 268
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.88 E-value=85 Score=20.89 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=32.0
Q ss_pred ceEEEcCCCC---------CCCHHHHHHHh--cccCCeEEEEeeCC---CCEEEEEeCCH
Q 031850 56 TTIFVGGLDP---------NVTDEDLRQPF--SQYGEIASVKIPVG---KGCGFVQFANR 101 (152)
Q Consensus 56 ~~l~v~nl~~---------~~~~~~l~~~f--~~~g~v~~~~~~~~---~g~afv~f~~~ 101 (152)
.++.|-|+|. ..+...|.+.| ..|.++.-..+... .|++.|.|.+-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 4566777776 14557888877 88987665555443 57899999985
No 269
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.16 E-value=64 Score=16.58 Aligned_cols=53 Identities=9% Similarity=0.217 Sum_probs=36.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeCC---HHHHHHHHH
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALH 109 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~~---~~~a~~a~~ 109 (152)
++.|.++.-.--...+...+.....|..+.+....+-+.|.|.. .+....++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 45666665544456788888888788888887777888898853 334444544
No 270
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.38 E-value=34 Score=18.99 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=12.9
Q ss_pred CCeEEEEeeCCCCEEEEEeCC
Q 031850 80 GEIASVKIPVGKGCGFVQFAN 100 (152)
Q Consensus 80 g~v~~~~~~~~~g~afv~f~~ 100 (152)
|+|.+| ...+..|+|.|.+
T Consensus 28 GtV~kV--~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKV--DSAREVCLVQFED 46 (68)
T ss_dssp EEEEEE--ETTTTEEEEEETT
T ss_pred eEEEEE--ecCCcEEEEEEcc
Confidence 445544 3447899999986
No 271
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.48 E-value=46 Score=18.99 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=13.4
Q ss_pred CCeEEEEeeCCCCEEEEEeCCH
Q 031850 80 GEIASVKIPVGKGCGFVQFANR 101 (152)
Q Consensus 80 g~v~~~~~~~~~g~afv~f~~~ 101 (152)
|+|.+| ...+..|+|.|.+.
T Consensus 45 GTI~kV--~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKV--DSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEE--ETTTTEEEEEETTS
T ss_pred EEEEEe--ccCCCEEEEEEcCC
Confidence 455544 34478999999863
No 272
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.21 E-value=99 Score=18.64 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=25.6
Q ss_pred CeEEEEeeCC-CCEEEEEeCCHHHHHHHHHHhCCC
Q 031850 81 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGT 114 (152)
Q Consensus 81 ~v~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~ 114 (152)
.|..+..+.+ +||-||+=.+......|+..+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3666655443 899999999999999998766543
No 273
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.45 E-value=75 Score=18.46 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=25.9
Q ss_pred CeEEEEeeC-CCCEEEEEeCCHHHHHHHHHHhCCCe
Q 031850 81 EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTV 115 (152)
Q Consensus 81 ~v~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~ 115 (152)
.+..+.++. -.||.||++...++...++....|..
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCce
Confidence 355665553 37999999999998888887666644
No 274
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.90 E-value=84 Score=22.24 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=22.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeE
Q 031850 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (152)
Q Consensus 56 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 83 (152)
..+.|+|+|+.++..-|..++.. ..+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCC
Confidence 46789999999999999988876 4443
No 275
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.10 E-value=1.1e+02 Score=15.95 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEeeCCCCEEEEEeC----CHHHHHHHHHH
Q 031850 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHK 110 (152)
Q Consensus 57 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~afv~f~----~~~~a~~a~~~ 110 (152)
++.|.++.=.--...++..+.....|..+.+....+.+.|.|. +.+....++..
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666554444678888888877888877766788899986 34566666654
Done!