Query 031851
Match_columns 152
No_of_seqs 124 out of 1058
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0105 Ndk Nucleoside diphosp 100.0 8.3E-50 1.8E-54 288.0 11.6 127 1-127 2-128 (135)
2 PRK14542 nucleoside diphosphat 100.0 1.2E-48 2.6E-53 288.0 12.5 127 1-127 1-127 (137)
3 PRK14541 nucleoside diphosphat 100.0 8.3E-48 1.8E-52 284.5 12.6 127 1-127 1-127 (140)
4 PRK14545 nucleoside diphosphat 100.0 4.5E-47 9.8E-52 280.3 12.6 131 1-132 3-133 (139)
5 PTZ00093 nucleoside diphosphat 100.0 5.3E-47 1.1E-51 282.8 12.8 131 1-132 2-132 (149)
6 PRK14540 nucleoside diphosphat 100.0 1E-46 2.2E-51 276.9 12.8 127 1-127 2-128 (134)
7 cd04415 NDPk7A Nucleoside diph 100.0 1E-46 2.2E-51 276.0 11.0 124 2-127 1-127 (131)
8 PRK00668 ndk mulitfunctional n 100.0 5E-46 1.1E-50 273.2 12.1 127 1-127 1-127 (134)
9 cd04413 NDPk_I Nucleoside diph 100.0 8.7E-46 1.9E-50 270.7 12.0 126 2-127 1-126 (130)
10 cd04412 NDPk7B Nucleoside diph 100.0 1.2E-45 2.7E-50 271.1 11.6 126 2-127 1-130 (134)
11 PLN02931 nucleoside diphosphat 100.0 1.7E-45 3.6E-50 281.0 11.7 135 1-136 29-166 (177)
12 cd04418 NDPk5 Nucleoside dipho 100.0 1.7E-45 3.6E-50 269.8 11.1 124 2-127 1-127 (132)
13 PLN02619 nucleoside-diphosphat 100.0 1.3E-45 2.8E-50 290.9 11.3 131 1-132 88-218 (238)
14 PRK14543 nucleoside diphosphat 100.0 2.1E-45 4.6E-50 278.6 11.5 127 1-127 5-146 (169)
15 cd04414 NDPk6 Nucleoside dipho 100.0 5.6E-45 1.2E-49 268.0 11.5 126 2-127 1-130 (135)
16 cd04416 NDPk_TX NDP kinase dom 100.0 4.6E-45 9.9E-50 267.4 10.3 125 2-127 1-128 (132)
17 cd00595 NDPk Nucleoside diphos 100.0 7.9E-45 1.7E-49 266.4 11.5 126 2-127 1-129 (133)
18 PF00334 NDK: Nucleoside dipho 100.0 8.5E-45 1.8E-49 266.4 8.3 126 2-127 1-126 (135)
19 smart00562 NDK These are enzym 100.0 2.8E-43 6.1E-48 258.5 11.4 130 2-132 1-130 (135)
20 PRK14544 nucleoside diphosphat 100.0 2.2E-42 4.9E-47 264.7 12.4 127 1-127 3-172 (183)
21 KOG0888 Nucleoside diphosphate 100.0 7.5E-43 1.6E-47 260.3 6.5 128 1-128 5-135 (156)
22 PF14454 Prok_Ub: Prokaryotic 84.0 0.3 6.6E-06 31.5 -0.1 42 39-89 23-64 (65)
23 TIGR03738 PRTRC_C PRTRC system 79.1 0.31 6.8E-06 31.5 -1.4 43 38-89 21-63 (66)
24 COG1799 Uncharacterized protei 74.0 8.2 0.00018 29.4 4.9 44 2-49 73-116 (167)
25 PF04472 DUF552: Protein of un 52.9 35 0.00076 21.8 4.3 42 5-50 1-42 (73)
26 cd04823 ALAD_PBGS_aspartate_ri 45.9 56 0.0012 27.5 5.4 84 7-92 158-287 (320)
27 PRK09283 delta-aminolevulinic 44.8 23 0.0005 29.8 2.9 46 7-54 161-206 (323)
28 cd00384 ALAD_PBGS Porphobilino 44.0 18 0.00039 30.3 2.2 46 7-54 153-198 (314)
29 KOG2794 Delta-aminolevulinic a 41.3 87 0.0019 26.1 5.7 46 7-54 174-219 (340)
30 PRK13384 delta-aminolevulinic 39.7 25 0.00055 29.5 2.4 46 7-54 163-208 (322)
31 PLN02619 nucleoside-diphosphat 39.6 11 0.00023 30.4 0.2 16 126-142 87-102 (238)
32 TIGR00640 acid_CoA_mut_C methy 35.8 1.4E+02 0.003 21.5 5.6 40 5-46 7-46 (132)
33 PF07576 BRAP2: BRCA1-associat 35.7 1.6E+02 0.0034 20.7 6.5 17 41-57 63-79 (110)
34 KOG0328 Predicted ATP-dependen 34.2 1.6E+02 0.0035 24.9 6.3 92 16-107 151-263 (400)
35 PF01408 GFO_IDH_MocA: Oxidore 33.7 1.1E+02 0.0024 20.5 4.7 44 5-52 66-109 (120)
36 cd06355 PBP1_FmdD_like Peripla 31.5 2.8E+02 0.0061 22.5 7.6 73 3-87 134-208 (348)
37 COG0113 HemB Delta-aminolevuli 29.9 52 0.0011 27.7 2.7 46 7-54 166-211 (330)
38 COG1724 Predicted RNA binding 29.4 77 0.0017 20.5 2.9 20 18-37 9-28 (66)
39 PF06130 PduL: Propanediol uti 29.1 95 0.0021 20.2 3.4 20 31-50 4-23 (71)
40 cd04883 ACT_AcuB C-terminal AC 27.9 1.2E+02 0.0025 18.4 3.6 13 20-32 56-68 (72)
41 KOG4132 Uroporphyrinogen III s 27.6 1.6E+02 0.0035 23.8 5.1 74 3-91 4-77 (260)
42 PF15323 Ashwin: Developmental 27.0 73 0.0016 25.3 3.0 44 5-53 2-45 (214)
43 COG3473 Maleate cis-trans isom 26.8 95 0.0021 24.9 3.6 39 3-43 119-157 (238)
44 COG0673 MviM Predicted dehydro 26.6 2.2E+02 0.0048 22.8 6.0 46 4-53 70-115 (342)
45 COG1504 Uncharacterized conser 25.0 1.2E+02 0.0027 21.7 3.6 53 38-90 47-110 (121)
46 cd06335 PBP1_ABC_ligand_bindin 24.9 3.6E+02 0.0079 21.7 7.0 73 3-88 139-214 (347)
47 PF13788 DUF4180: Domain of un 24.5 1.3E+02 0.0028 21.4 3.7 24 13-36 53-76 (113)
48 cd04882 ACT_Bt0572_2 C-termina 22.9 1.7E+02 0.0036 17.1 3.6 12 20-31 52-63 (65)
49 PRK07455 keto-hydroxyglutarate 22.9 2.8E+02 0.0061 21.0 5.6 48 2-51 12-59 (187)
50 PF03698 UPF0180: Uncharacteri 22.4 92 0.002 20.8 2.4 24 12-36 5-28 (80)
51 PF04015 DUF362: Domain of unk 22.3 3.3E+02 0.0071 20.5 5.9 46 6-51 2-59 (206)
52 cd00550 ArsA_ATPase Oxyanion-t 22.2 1.8E+02 0.0038 23.0 4.5 32 3-34 162-193 (254)
53 PF13673 Acetyltransf_10: Acet 21.9 2.4E+02 0.0051 18.3 6.1 45 4-52 68-115 (117)
54 PF04339 DUF482: Protein of un 21.0 2E+02 0.0043 24.6 4.8 53 23-75 193-257 (370)
55 COG2243 CobF Precorrin-2 methy 20.6 4.5E+02 0.0098 21.1 7.1 58 16-78 41-100 (234)
56 cd04903 ACT_LSD C-terminal ACT 20.0 2E+02 0.0043 16.8 3.9 32 5-38 2-33 (71)
57 COG2074 2-phosphoglycerate kin 20.0 2.9E+02 0.0064 22.9 5.3 41 8-57 29-70 (299)
No 1
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.3e-50 Score=287.95 Aligned_cols=127 Identities=50% Similarity=0.862 Sum_probs=126.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
|||||+|||||++.++++|+||++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.+|+++|+|||.+|+|||||++||.+...|+||||||+|+|+|||
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEI 128 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREI 128 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.2e-48 Score=288.05 Aligned_cols=127 Identities=38% Similarity=0.592 Sum_probs=125.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 79999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++||+||..|.|+|||++||.+..+|+|||||++++|.+|+
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei 127 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEI 127 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=8.3e-48 Score=284.53 Aligned_cols=127 Identities=35% Similarity=0.565 Sum_probs=125.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||++|||++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 69999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++||+||..|.|+|||++||.+..+|+|||||++++|.+|+
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei 127 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEA 127 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 4
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.5e-47 Score=280.32 Aligned_cols=131 Identities=36% Similarity=0.548 Sum_probs=126.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
.|+||+|||||++.++++|+||++|+++||.|+++|+++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|++||+++||+||.+|.|+|||++||.+..+|++||||++++|.+|+ +..|
T Consensus 83 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei-~~fF 133 (139)
T PRK14545 83 VEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEG-AFHF 133 (139)
T ss_pred HHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4433
No 5
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=5.3e-47 Score=282.85 Aligned_cols=131 Identities=53% Similarity=0.899 Sum_probs=126.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|++||+++||+||.+|.|+|||++||.+..+|+|||||++++|.+|+ +..|
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei-~~fF 132 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREI-ALWF 132 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4444
No 6
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1e-46 Score=276.92 Aligned_cols=127 Identities=42% Similarity=0.747 Sum_probs=124.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||+.|++||+|||+++|+|.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++||+||..|.|+|||++||.+..+|++||||++++|.+|+
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~ 128 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREI 128 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 7
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1e-46 Score=276.01 Aligned_cols=124 Identities=30% Similarity=0.528 Sum_probs=121.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||++||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 79999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
++||+++||+||..| .|+|||++||.+..+|+|||||++++|.+|+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei 127 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAAREL 127 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHH
Confidence 999999999999887 8999999999999999999999999999998
No 8
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=5e-46 Score=273.21 Aligned_cols=127 Identities=51% Similarity=0.865 Sum_probs=125.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|++||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 68999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++||+||..+.|+|||++||.+.++|++||||++++|.+|+
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei 127 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREI 127 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 9
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=8.7e-46 Score=270.66 Aligned_cols=126 Identities=51% Similarity=0.865 Sum_probs=124.0
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.++++|+||++|.++||.|+++||++||+++|++||.+|.+++||++|+++|++|||++|+|.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
++||+++||+||+.+.|+|||++||.+.++|++||||++++|.+|+
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~ 126 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREI 126 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998
No 10
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.2e-45 Score=271.14 Aligned_cols=126 Identities=29% Similarity=0.437 Sum_probs=123.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCC-CCHHHHHHHhccCCEEEEEEeecCh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK-PFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~-~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
++||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|+++ +||++|+++|++||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 689999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++||+||..| .|+|||++||.+..+|+|||||++++|.+|+
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~ 130 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLEL 130 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHH
Confidence 9999999999999877 8999999999999999999999999999997
No 11
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.7e-45 Score=280.96 Aligned_cols=135 Identities=29% Similarity=0.421 Sum_probs=128.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
.|+||+|||||++.++++|+|+++|+++||.|+++||++||+++|++||.+|.+++||++|++||++||+++|+|.|+||
T Consensus 29 ~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~na 108 (177)
T PLN02931 29 EERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENA 108 (177)
T ss_pred ceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCccccccccccccceeec
Q 031851 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLMALLT 136 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~~~~~ 136 (152)
|++||+++||+||..| .|+|||++||.+..+|++||||++++|++|+ +..|....
T Consensus 109 V~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei-~~fF~~~~ 166 (177)
T PLN02931 109 VSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREI-SFFFGDVS 166 (177)
T ss_pred HHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHH-HHhCCccc
Confidence 9999999999999887 6999999999999999999999999999998 55554443
No 12
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.7e-45 Score=269.85 Aligned_cols=124 Identities=23% Similarity=0.379 Sum_probs=121.7
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++++ +|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|++||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 79999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
++||+++||+||..| .|+|||++||.+..+|+|||||++++|.+|+
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei 127 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREI 127 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHH
Confidence 999999999999888 8999999999999999999999999999998
No 13
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=1.3e-45 Score=290.89 Aligned_cols=131 Identities=54% Similarity=0.943 Sum_probs=127.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||++||+++|+|+|+|+
T Consensus 88 ~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~Gena 167 (238)
T PLN02619 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGV 167 (238)
T ss_pred hceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|++||+++|||||..+.|+|||++||.+..+|+|||||++|+|.+|+ +..|
T Consensus 168 V~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI-~~fF 218 (238)
T PLN02619 168 IKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEI-NLWF 218 (238)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4444
No 14
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.1e-45 Score=278.55 Aligned_cols=127 Identities=35% Similarity=0.614 Sum_probs=123.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHH-----HhcCCCCHHHHHHHhccCCEEEEEE
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~-----~~~~~~~~~~l~~~~~sgpvi~l~l 75 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||. +|.+++||++|++||+|||+++|+|
T Consensus 5 ~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl 84 (169)
T PRK14543 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVV 84 (169)
T ss_pred cceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999995 7899999999999999999999999
Q ss_pred eecChhHHHHhHhCCCCCCCCCCCCcccccccc----------CCCcEEEeCCCcccccccc
Q 031851 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV----------TGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~fg~~----------~~~N~vH~Sds~e~A~~e~ 127 (152)
.|+|||++||+++|||||..|.|+|||++||.+ .++|+|||||++++|.||+
T Consensus 85 ~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi 146 (169)
T PRK14543 85 EGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREI 146 (169)
T ss_pred ECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHH
Confidence 999999999999999999999999999999997 7899999999999999998
No 15
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=5.6e-45 Score=268.02 Aligned_cols=126 Identities=26% Similarity=0.396 Sum_probs=120.5
Q ss_pred cEEEEEEcCcccccCch-HHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 2 EQTFIMIKPDGVQRGLV-GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~-g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
|+||+|||||++.+++. |.|++.|+++||.|+++||++||+++|++||.+|.+++||++|++||++||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 79999999999998876 56677788999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++||+||..| .|+|||++||.+..+|++||||++++|.+|+
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei 130 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREI 130 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHH
Confidence 9999999999999765 8999999999999999999999999999998
No 16
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=4.6e-45 Score=267.43 Aligned_cols=125 Identities=26% Similarity=0.450 Sum_probs=122.2
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.+ ++|+|+++|.++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 79999999999977 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
++||+++||+||..| .|+|||++||.+.++|++||||++++|.+|+
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei 128 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEI 128 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHH
Confidence 999999999999877 8999999999999999999999999999998
No 17
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=7.9e-45 Score=266.37 Aligned_cols=126 Identities=36% Similarity=0.625 Sum_probs=123.0
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|+++|++||+++|+|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 78999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
++||+++||+||..| .|+|||++||.+.++|+|||||++++|.+|+
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei 129 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREI 129 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHH
Confidence 999999999999854 7999999999999999999999999999998
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=8.5e-45 Score=266.45 Aligned_cols=126 Identities=35% Similarity=0.632 Sum_probs=116.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.++++|+||++|.++||.|+++|++++|+++|++||..+.++++|+.++++|++||+++|+++|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
++||+++||+||++|.|+|||++||.+..+|++||||++++|.||+
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~ 126 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREI 126 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHH
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=2.8e-43 Score=258.47 Aligned_cols=130 Identities=45% Similarity=0.807 Sum_probs=125.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.++++|+||++|.++||.|+++||++||+++|++||.++.++++|++|+++|++||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
++||+++||++|..+.|+|||++||.+.++|+|||||++++|.+|+ +..|
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~-~~~F 130 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREI-ALFF 130 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHH-HHcC
Confidence 9999999999998889999999999999999999999999999998 4444
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.2e-42 Score=264.71 Aligned_cols=127 Identities=37% Similarity=0.649 Sum_probs=121.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHh----------------------------
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL---------------------------- 52 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~---------------------------- 52 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.++
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 4899999999999988999999999999999999999999999999999954
Q ss_pred -----cCCCCHHHHHHHhccCCEEEEEEeecChhHHHHhHhCCCCCCCCCCCCccccccccC----------CCcEEEeC
Q 031851 53 -----SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GILSMEVT 117 (152)
Q Consensus 53 -----~~~~~~~~l~~~~~sgpvi~l~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~fg~~~----------~~N~vH~S 117 (152)
.+++||++|++||+||||++|+|.|+|||++||+++||++|..|.|+|||++||.+. .+|+||||
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~S 162 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHAS 162 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECC
Confidence 678999999999999999999999999999999999999999999999999999873 79999999
Q ss_pred CCcccccccc
Q 031851 118 QLRVPRKKSP 127 (152)
Q Consensus 118 ds~e~A~~e~ 127 (152)
|++++|.+|+
T Consensus 163 ds~e~A~rEi 172 (183)
T PRK14544 163 DSPEEAEREI 172 (183)
T ss_pred CCHHHHHHHH
Confidence 9999999998
No 21
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.5e-43 Score=260.34 Aligned_cols=128 Identities=52% Similarity=0.887 Sum_probs=125.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||++||||++.+|++|+||.+++++||.|++.|+++++++++++||.++++++||+.|+.||+|||++||+|+|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCccccccccc
Q 031851 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSPC 128 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~ 128 (152)
|+.||+++|||+|..| .|+|||++||.+..+|++|||||.++|+|||+
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~ 135 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIK 135 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHH
Confidence 9999999999999887 99999999999999999999999999999994
No 22
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=84.03 E-value=0.3 Score=31.52 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=30.5
Q ss_pred cCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChhHHHHhHhC
Q 031851 39 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIG 89 (152)
Q Consensus 39 ~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav~~~r~l~G 89 (152)
.++.++++.||... ||+|...--.||.+ +|+..+-.++.-+|
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v----~~~~~vY~f~~~~G 64 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV----KGDVAVYTFRRAVG 64 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE----eCCEEEEEEEeccc
Confidence 58999999999886 89988777778755 55555554444443
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=79.07 E-value=0.31 Score=31.50 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=30.8
Q ss_pred ecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChhHHHHhHhC
Q 031851 38 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIG 89 (152)
Q Consensus 38 ~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav~~~r~l~G 89 (152)
-++|++++++||... ||+|...--+||.+ .++.++-+++.-+|
T Consensus 21 p~~spe~V~dfYs~~-----YPeLttA~v~gP~~----~~~~~~Y~F~~~~G 63 (66)
T TIGR03738 21 PAMSPEQVRDFYSAQ-----YPELLNAEVEGPVV----KGGVQTYTFRRAVG 63 (66)
T ss_pred CCCCHHHHHHHHhcc-----CchheeeeeeCCeE----eCCEEEEEEEEeec
Confidence 358999999999885 89987766677754 55555555555554
No 24
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.01 E-value=8.2 Score=29.45 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=36.8
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHH
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHY 49 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y 49 (152)
..++++++|..+.. ..+|.+.|.+....++++.. |++++|++..
T Consensus 73 ~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~~--m~~~qArRiv 116 (167)
T COG1799 73 SSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQR--MDPAQARRIV 116 (167)
T ss_pred ceEEEEecCccHHH--HHHHHHHHhcCceEEEEeee--CCHHHHHHHH
Confidence 36899999999987 78999999988888887765 5899988774
No 25
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=52.95 E-value=35 Score=21.85 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=28.4
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHH
Q 031851 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE 50 (152)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~ 50 (152)
+++++|..+.. +.+|.+.|.+....|.++ -.++.++++++..
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~D 42 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNL--ENLDDEEAQRILD 42 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHH
Confidence 36889999987 889999998886666665 5668888777653
No 26
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=45.88 E-value=56 Score=27.47 Aligned_cols=84 Identities=19% Similarity=0.367 Sum_probs=60.8
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC--------------------------------
Q 031851 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS-------------------------------- 54 (152)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~-------------------------------- 54 (152)
+|-|..+-.|+++.|-+.|.++||. ++-.+..+-..|..||+.+++
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di 235 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDI 235 (320)
T ss_pred EEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhH
Confidence 4567766678899999999999994 578889999999999998886
Q ss_pred ---------CC--CHHHHHHHh---ccCCEEEEEEeecChhHHHHhHhCCCC
Q 031851 55 ---------KP--FFGSLIEYI---TSGPVVAMIWEGEGVVKTGRTIIGATN 92 (152)
Q Consensus 55 ---------~~--~~~~l~~~~---~sgpvi~l~l~g~nav~~~r~l~Gp~~ 92 (152)
|| .|-+++.-+ +.=|+.+..++|+-+--+.-...|-.|
T Consensus 236 ~EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d 287 (320)
T cd04823 236 AEGADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLD 287 (320)
T ss_pred HhCCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 11 155554333 346888888888766555555555444
No 27
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=44.85 E-value=23 Score=29.80 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=39.4
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC
Q 031851 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (152)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~ 54 (152)
+|-|..+-.|+++.|-+.|.++|| .++-.+..+-..+..||+.+++
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImSYsaKyaS~fYGPFRd 206 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGF--TDVPIMSYSAKYASAFYGPFRD 206 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCC--CCCceeecHHHHHHhhhHHHHH
Confidence 456776667889999999999999 4688899999999999998875
No 28
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=44.01 E-value=18 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=39.4
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC
Q 031851 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (152)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~ 54 (152)
+|-|..+-.|+++.|-+.|.++|| .++-.+..+-..|..||+.+++
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred eeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHHH
Confidence 466777767889999999999999 6688899999999999998775
No 29
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=41.31 E-value=87 Score=26.06 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=37.9
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC
Q 031851 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (152)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~ 54 (152)
++-|.-+-.|+++.|-+.|...||. +.-.+..+...+..||+.+++
T Consensus 174 vVapSDmmDgRV~aIk~aL~~~~l~--~vsvmSYsaKfas~fyGpFR~ 219 (340)
T KOG2794|consen 174 VVAPSDMMDGRVGAIKQALDAEGLQ--KVSVMSYSAKFASSFYGPFRE 219 (340)
T ss_pred eecchHhhcchHHHHHHHHHHhccc--ceEEEeehhhhhhccccchHH
Confidence 3455555556799999999999999 888899999999999987775
No 30
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=39.69 E-value=25 Score=29.53 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=39.0
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC
Q 031851 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (152)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~ 54 (152)
+|-|..+-.|+++.|-+.|.++|| .++-.+..+-..+..||+.+++
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImSYsaKyaS~fYGPFRd 208 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGF--EHVAILAHSAKFASSFYGPFRA 208 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCC--CCCceeehhHhhhhhhcchHHH
Confidence 466776667889999999999999 4688899999999999998774
No 31
>PLN02619 nucleoside-diphosphate kinase
Probab=39.59 E-value=11 Score=30.43 Aligned_cols=16 Identities=0% Similarity=-0.124 Sum_probs=13.3
Q ss_pred ccccccceeecCCcccc
Q 031851 126 SPCGSLMALLTGRAAFT 142 (152)
Q Consensus 126 e~~~~~~~~~~p~~~~~ 142 (152)
+. |.||++||||+...
T Consensus 87 ~~-ErTlaiIKPDaV~r 102 (238)
T PLN02619 87 EM-ERTFIAIKPDGVQR 102 (238)
T ss_pred hh-ceEEEEECcchhhc
Confidence 44 89999999999853
No 32
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.81 E-value=1.4e+02 Score=21.47 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=26.2
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHH
Q 031851 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAE 46 (152)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~ 46 (152)
++-+++|..+.| ..-+-..|+.+||++....... +.+++-
T Consensus 7 ~a~~g~D~Hd~g-~~iv~~~l~~~GfeVi~lg~~~-s~e~~v 46 (132)
T TIGR00640 7 VAKMGQDGHDRG-AKVIATAYADLGFDVDVGPLFQ-TPEEIA 46 (132)
T ss_pred EEeeCCCccHHH-HHHHHHHHHhCCcEEEECCCCC-CHHHHH
Confidence 455677776654 2234456678999999999875 444443
No 33
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=35.72 E-value=1.6e+02 Score=20.74 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHhcCCCC
Q 031851 41 DRPFAEKHYEDLSSKPF 57 (152)
Q Consensus 41 t~e~a~~~y~~~~~~~~ 57 (152)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 67789999999999987
No 34
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=34.24 E-value=1.6e+02 Score=24.92 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHcCCeEEeEEEecCCHHHH-------HHHHHHhcCCC----------CHHH----HHHHhccCCEEEEE
Q 031851 16 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFA-------EKHYEDLSSKP----------FFGS----LIEYITSGPVVAMI 74 (152)
Q Consensus 16 ~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a-------~~~y~~~~~~~----------~~~~----l~~~~~sgpvi~l~ 74 (152)
|-.|.|++.|....++-.+.||+.|++.+- .+.|.-++.-| -+++ +...+..-||-.++
T Consensus 151 GtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 151 GTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 447899999999999999999999998763 33444443221 1222 33444456777666
Q ss_pred EeecChhHHHHhHhCCCCCCCCCCCCccccccc
Q 031851 75 WEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAI 107 (152)
Q Consensus 75 l~g~nav~~~r~l~Gp~~p~~a~p~slR~~fg~ 107 (152)
=..+-..+-.+++.=..+-+++.-.+|-..|.+
T Consensus 231 krdeltlEgIKqf~v~ve~EewKfdtLcdLYd~ 263 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDT 263 (400)
T ss_pred ecCCCchhhhhhheeeechhhhhHhHHHHHhhh
Confidence 544434444444433333333444444444443
No 35
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.70 E-value=1.1e+02 Score=20.49 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=35.5
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHh
Q 031851 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (152)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~ 52 (152)
+++.-|+... -+++....+.|..|..-|-+.++.+++++++...
T Consensus 66 V~I~tp~~~h----~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 66 VIIATPPSSH----AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp EEEESSGGGH----HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEecCCcch----HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 4555566443 4788888999999999999999999999998654
No 36
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=31.52 E-value=2.8e+02 Score=22.46 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=39.7
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCC-EEEEEEeecCh
Q 031851 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGP-VVAMIWEGEGV 80 (152)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgp-vi~l~l~g~na 80 (152)
+++++|-+|. +-......+-+.+++.|++|+..........+.... +.+...++| ++.+...+.++
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~------------v~~l~~~~pd~v~~~~~~~~~ 201 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSI------------INKIKAAKPDVVVSTVNGDSN 201 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHH------------HHHHHHhCCCEEEEeccCCch
Confidence 5677777773 333334455667788899988766555443332222 223344566 33344455565
Q ss_pred hHHHHhH
Q 031851 81 VKTGRTI 87 (152)
Q Consensus 81 v~~~r~l 87 (152)
+.-.|++
T Consensus 202 ~~~~~~~ 208 (348)
T cd06355 202 VAFFKQL 208 (348)
T ss_pred HHHHHHH
Confidence 5544443
No 37
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=29.91 E-value=52 Score=27.68 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=38.9
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC
Q 031851 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (152)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~ 54 (152)
+|-|..+=.|+++.|-+.|.++||. ++..+..+...|..||+.+++
T Consensus 166 ivAPSdMMDGrV~aIR~aLd~ag~~--~v~IMsYsaKyASafYGPFRd 211 (330)
T COG0113 166 IVAPSDMMDGRVGAIREALDEAGFI--DVPIMSYSAKYASAFYGPFRD 211 (330)
T ss_pred eecccccccchHHHHHHHHHHcCCC--cceeeehhHHHhhhccccHHH
Confidence 5778877788999999999999986 556788899999999988775
No 38
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=29.40 E-value=77 Score=20.45 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCeEEeEEE
Q 031851 18 VGEIIIRFEKKGFSLKGLKL 37 (152)
Q Consensus 18 ~g~Ii~~i~~~Gf~I~~~k~ 37 (152)
..++|..|++.||..++.|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 46899999999999998874
No 39
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=29.12 E-value=95 Score=20.20 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.8
Q ss_pred eEEeEEEecCCHHHHHHHHH
Q 031851 31 SLKGLKLMTVDRPFAEKHYE 50 (152)
Q Consensus 31 ~I~~~k~~~lt~e~a~~~y~ 50 (152)
.|+..|.++||+++|+.|+.
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 57888999999999999975
No 40
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.87 E-value=1.2e+02 Score=18.44 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=6.0
Q ss_pred HHHHHHHHcCCeE
Q 031851 20 EIIIRFEKKGFSL 32 (152)
Q Consensus 20 ~Ii~~i~~~Gf~I 32 (152)
.+++.|.++||.|
T Consensus 56 ~~~~~L~~~G~~v 68 (72)
T cd04883 56 PIIEDLRRAGYEV 68 (72)
T ss_pred HHHHHHHHCCCee
Confidence 4444444444444
No 41
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=27.55 E-value=1.6e+02 Score=23.84 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=53.0
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChhH
Q 031851 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVK 82 (152)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav~ 82 (152)
.+++++|-+... .+.-...+...||.-+-+-.++++--...+|-.....-+.|. .+++..+.+|+
T Consensus 4 ~~vlllK~~s~~---~D~Y~~~l~~~~~epifIP~l~f~f~~l~~lr~kL~~p~kY~------------giIfTSpR~VE 68 (260)
T KOG4132|consen 4 VTVLLLKNKSVP---IDPYEEELRSYGLEPIFIPVLSFTFVNLQQLRAKLNNPPKYA------------GIIFTSPRCVE 68 (260)
T ss_pred eeEEEecCCCCC---CCHHHHHHHhcCCCceeecceeeeeccHHHHHHHhcCchhhc------------eeEEeChHHHH
Confidence 388899988765 357788999999988877777666555555544443332232 27788899999
Q ss_pred HHHhHhCCC
Q 031851 83 TGRTIIGAT 91 (152)
Q Consensus 83 ~~r~l~Gp~ 91 (152)
.+.+.++++
T Consensus 69 a~~eaL~q~ 77 (260)
T KOG4132|consen 69 ALNEALIQT 77 (260)
T ss_pred HHHHHhccc
Confidence 999999877
No 42
>PF15323 Ashwin: Developmental protein
Probab=27.03 E-value=73 Score=25.28 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=35.9
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhc
Q 031851 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (152)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~ 53 (152)
..++.|+-+.+ ..++..|.+.++.+.+ ..++++++..++|..|.
T Consensus 2 ~~LlhPElLS~---~~Ll~iL~~r~I~~~~--~~~~~kd~L~~Ly~q~~ 45 (214)
T PF15323_consen 2 ELLLHPELLSR---EFLLLILRQRNIDVEN--DEKLDKDELTELYVQHA 45 (214)
T ss_pred ccccChhhcCH---HHHHHHHHHcCcCccc--hhhcCHHHHHHHHHHHh
Confidence 35788998874 5778888899998887 67889999999998764
No 43
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.80 E-value=95 Score=24.87 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=29.4
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHH
Q 031851 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRP 43 (152)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e 43 (152)
+.+.++.|--..- -...++.|+.+||.|+..+-+-++.+
T Consensus 119 ~ri~vlTPY~~ev--n~~e~ef~~~~Gfeiv~~~~Lgi~dn 157 (238)
T COG3473 119 QRISVLTPYIDEV--NQREIEFLEANGFEIVDFKGLGITDN 157 (238)
T ss_pred ceEEEeccchhhh--hhHHHHHHHhCCeEEEEeeccCCccc
Confidence 4567888876543 34678899999999999988776654
No 44
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.55 E-value=2.2e+02 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=36.4
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhc
Q 031851 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (152)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~ 53 (152)
.+.|.-|+..+. ++.....++|-.|..-|-+.+|.++++++...-+
T Consensus 70 ~V~Iatp~~~H~----e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 70 AVYIATPNALHA----ELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred EEEEcCCChhhH----HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 355666776653 6677778899999999999999999998876443
No 45
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=24.98 E-value=1.2e+02 Score=21.70 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=36.4
Q ss_pred ecCCHHHHHHHHHHhcCC-----C------CHHHHHHHhccCCEEEEEEeecChhHHHHhHhCC
Q 031851 38 MTVDRPFAEKHYEDLSSK-----P------FFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGA 90 (152)
Q Consensus 38 ~~lt~e~a~~~y~~~~~~-----~------~~~~l~~~~~sgpvi~l~l~g~nav~~~r~l~Gp 90 (152)
.+++.++++++|.+-.+. . .-++..+++..-.|-+.++-.+.||++|.++-|.
T Consensus 47 Hkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 47 HKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred cccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 467888888888754331 1 1233445555556777888888999999999875
No 46
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.87 E-value=3.6e+02 Score=21.70 Aligned_cols=73 Identities=7% Similarity=0.149 Sum_probs=43.8
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHH-HHHHhccCC-EEEEEEeecC
Q 031851 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS-LIEYITSGP-VVAMIWEGEG 79 (152)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~-l~~~~~sgp-vi~l~l~g~n 79 (152)
+.++++-++. +-+.....+.+.+.+.|..++....+..+.. .|.. +.+...+|| ++.+...+.+
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-------------d~s~~i~~i~~~~~d~v~~~~~~~~ 205 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDK-------------DMTAQLLRAKAAGADAIIIVGNGPE 205 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCc-------------cHHHHHHHHHhCCCCEEEEEecChH
Confidence 3556666653 4444566777888888998887666544322 2322 233445677 5555556677
Q ss_pred hhHHHHhHh
Q 031851 80 VVKTGRTII 88 (152)
Q Consensus 80 av~~~r~l~ 88 (152)
++.-++++-
T Consensus 206 ~~~~~~~~~ 214 (347)
T cd06335 206 GAQIANGMA 214 (347)
T ss_pred HHHHHHHHH
Confidence 777666554
No 47
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=24.47 E-value=1.3e+02 Score=21.38 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=18.2
Q ss_pred cccCchHHHHHHHHHcCCeEEeEE
Q 031851 13 VQRGLVGEIIIRFEKKGFSLKGLK 36 (152)
Q Consensus 13 ~~~~~~g~Ii~~i~~~Gf~I~~~k 36 (152)
++.|++|+|++++...++++.-+-
T Consensus 53 L~TglAGeiLQKf~NY~iklAivG 76 (113)
T PF13788_consen 53 LRTGLAGEILQKFVNYRIKLAIVG 76 (113)
T ss_pred hhcchHHHHHHHHHhhceeEEEEE
Confidence 456788999999988887766653
No 48
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.94 E-value=1.7e+02 Score=17.12 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=5.2
Q ss_pred HHHHHHHHcCCe
Q 031851 20 EIIIRFEKKGFS 31 (152)
Q Consensus 20 ~Ii~~i~~~Gf~ 31 (152)
.+.+.|+++||.
T Consensus 52 ~~~~~L~~~G~~ 63 (65)
T cd04882 52 KAIEVLQERGVE 63 (65)
T ss_pred HHHHHHHHCCce
Confidence 344444444443
No 49
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.89 E-value=2.8e+02 Score=20.96 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=36.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHH
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYED 51 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~ 51 (152)
++.+.+|....... .-++++.+.+.|+.+.+.+.-..+..+..+....
T Consensus 12 ~~~~~v~r~~~~~~--~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~ 59 (187)
T PRK07455 12 HRAIAVIRAPDLEL--GLQMAEAVAAGGMRLIEITWNSDQPAELISQLRE 59 (187)
T ss_pred CCEEEEEEcCCHHH--HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 35677888887665 5678999999999999999988877665544433
No 50
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.44 E-value=92 Score=20.78 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=20.1
Q ss_pred ccccCchHHHHHHHHHcCCeEEeEE
Q 031851 12 GVQRGLVGEIIIRFEKKGFSLKGLK 36 (152)
Q Consensus 12 a~~~~~~g~Ii~~i~~~Gf~I~~~k 36 (152)
|+..+ +..|-+.|.++||.++.++
T Consensus 5 AVE~~-Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 5 AVEEG-LSNVKEALREKGYEVVDLE 28 (80)
T ss_pred EecCC-chHHHHHHHHCCCEEEecC
Confidence 56666 4689999999999999887
No 51
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=22.26 E-value=3.3e+02 Score=20.49 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=28.1
Q ss_pred EEEcCcccccC-----------chHHHHHHHHHcCCe-EEeEEEecCCHHHHHHHHHH
Q 031851 6 IMIKPDGVQRG-----------LVGEIIIRFEKKGFS-LKGLKLMTVDRPFAEKHYED 51 (152)
Q Consensus 6 ~lIKPda~~~~-----------~~g~Ii~~i~~~Gf~-I~~~k~~~lt~e~a~~~y~~ 51 (152)
|+|||+..... .+..+++.+.+.|.. |.-...-.......++.+..
T Consensus 2 V~IKpN~~~~~~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~ 59 (206)
T PF04015_consen 2 VLIKPNFVNPGPPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKR 59 (206)
T ss_pred EEEEeCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHH
Confidence 68999876421 367899999999986 44333333332445555443
No 52
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=22.21 E-value=1.8e+02 Score=23.03 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=24.3
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEe
Q 031851 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKG 34 (152)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~ 34 (152)
.+++++.|+......+...++.+.+.|..+..
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~g 193 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDA 193 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCE
Confidence 46889999987765567788899888875533
No 53
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=21.88 E-value=2.4e+02 Score=18.33 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=28.6
Q ss_pred EEEEEcCcccccCchHHHHHHHHH---cCCeEEeEEEecCCHHHHHHHHHHh
Q 031851 4 TFIMIKPDGVQRGLVGEIIIRFEK---KGFSLKGLKLMTVDRPFAEKHYEDL 52 (152)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~---~Gf~I~~~k~~~lt~e~a~~~y~~~ 52 (152)
..+.|.|+.-.+|.-..+++.+.+ .|+....+. +...+..||..+
T Consensus 68 ~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~~ 115 (117)
T PF13673_consen 68 SHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRKL 115 (117)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHHT
T ss_pred EEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHhC
Confidence 356788887777754445555543 288877777 777788888763
No 54
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=21.04 E-value=2e+02 Score=24.64 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHcCCeEEeEEEecCCHHHHHHHHHHhcC------------CCCHHHHHHHhccCCEEEEEE
Q 031851 23 IRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS------------KPFFGSLIEYITSGPVVAMIW 75 (152)
Q Consensus 23 ~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~------------~~~~~~l~~~~~sgpvi~l~l 75 (152)
.++.+.|++|....--.+++++...||.-+.. ..||..+.+-|...-++++..
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~ 257 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVAR 257 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEE
Confidence 45567899999999889999987776554332 246777777776654444443
No 55
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=20.62 E-value=4.5e+02 Score=21.07 Aligned_cols=58 Identities=26% Similarity=0.364 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHcCCeEEeEEE-ecCC-HHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeec
Q 031851 16 GLVGEIIIRFEKKGFSLKGLKL-MTVD-RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 78 (152)
Q Consensus 16 ~~~g~Ii~~i~~~Gf~I~~~k~-~~lt-~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~ 78 (152)
++...|++.....+..+..... +..+ ++..+++|.+. -..+.+++..|-.+++...|+
T Consensus 41 slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~-----a~~va~~l~~G~~VAf~~lGD 100 (234)
T COG2243 41 SLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEA-----AAEVAAELEAGRDVAFLTLGD 100 (234)
T ss_pred chHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHH-----HHHHHHHHHcCCeEEEEEccC
Confidence 4567889888887777666654 5556 78888888876 345667788887788777774
No 56
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.04 E-value=2e+02 Score=16.75 Aligned_cols=32 Identities=9% Similarity=0.310 Sum_probs=23.2
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEeEEEe
Q 031851 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLM 38 (152)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~ 38 (152)
+.+.-+|. .|.+.+|.+.|.+.|..|..+...
T Consensus 2 l~i~~~d~--~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDK--PGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCC--CChHHHHHHHHHHcCcCeeeeEEE
Confidence 44455553 345789999999999999887653
No 57
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=20.02 E-value=2.9e+02 Score=22.92 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=30.1
Q ss_pred EcCcc-cccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCC
Q 031851 8 IKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPF 57 (152)
Q Consensus 8 IKPda-~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~ 57 (152)
++||- +. .+-+|-..|.++|..++ |.++.++.|..+.++.+
T Consensus 29 ~~p~~Ay~--iA~~i~e~L~~~~~~~v-------~~~eir~~~~~l~~k~~ 70 (299)
T COG2074 29 VDPDLAYS--IAIEIQEELKKEGIRLV-------TKDEIREVYQKLLEKGD 70 (299)
T ss_pred cChhHHHH--HHHHHHHHHHhCCCeEe-------eHHHHHHHHHHHHHhcC
Confidence 56773 32 35567788888888775 78899999998887654
Done!