Query 031851
Match_columns 152
No_of_seqs 124 out of 1058
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 9.1E-52 3.1E-56 305.7 11.0 127 1-127 7-133 (145)
2 3evo_A NDP kinase, NDK, nucleo 100.0 1.9E-50 6.5E-55 299.2 12.1 127 1-127 6-133 (146)
3 3mpd_A Nucleoside diphosphate 100.0 1.9E-50 6.5E-55 300.7 11.5 131 1-132 5-135 (151)
4 3q8u_A Nucleoside diphosphate 100.0 2.3E-50 7.9E-55 301.7 11.5 127 1-127 1-127 (157)
5 1wkj_A Nucleoside diphosphate 100.0 3.1E-50 1.1E-54 295.5 11.5 127 1-127 1-127 (137)
6 1k44_A Nucleoside diphosphate 100.0 5.6E-50 1.9E-54 293.8 12.0 127 1-127 2-129 (136)
7 3fkb_A NDP kinase, NDK, nucleo 100.0 4.4E-50 1.5E-54 299.7 10.4 127 1-127 8-134 (155)
8 3ztp_A Nucleoside diphosphate 100.0 2.1E-50 7.3E-55 297.9 8.3 127 1-127 3-132 (142)
9 2hur_A NDK, nucleoside diphosp 100.0 9.2E-50 3.1E-54 294.5 11.2 131 1-132 2-132 (142)
10 4fkx_A NDK B, nucleoside dipho 100.0 7E-50 2.4E-54 299.9 10.4 127 1-127 11-137 (161)
11 1nhk_R Nucleoside diphosphate 100.0 9.7E-50 3.3E-54 294.9 10.5 131 1-132 2-132 (144)
12 2vu5_A Nucleoside diphosphate 100.0 1.1E-49 3.9E-54 295.8 10.5 127 1-127 1-127 (148)
13 1u8w_A Nucleoside diphosphate 100.0 1.8E-49 6.1E-54 295.0 10.8 131 1-132 1-131 (149)
14 3l7u_A Nucleoside diphosphate 100.0 1.6E-49 5.5E-54 300.6 10.6 131 1-132 24-154 (172)
15 1xiq_A Nucleoside diphosphate 100.0 1.7E-49 5.9E-54 297.1 10.4 131 1-132 9-139 (157)
16 3r9l_A Nucleoside diphosphate 100.0 5.2E-50 1.8E-54 299.3 7.5 131 1-132 7-137 (155)
17 1pku_A Nucleoside diphosphate 100.0 2.1E-49 7.3E-54 294.8 10.1 131 1-132 2-132 (150)
18 1s57_A Nucleoside diphosphate 100.0 4.9E-49 1.7E-53 293.8 11.6 131 1-132 5-135 (153)
19 3bbb_A Nucleoside diphosphate 100.0 4.9E-49 1.7E-53 293.2 10.5 127 1-127 3-129 (151)
20 3js9_A Nucleoside diphosphate 100.0 3.9E-49 1.3E-53 294.8 10.0 127 1-127 9-135 (156)
21 1nb2_A Nucleoside diphosphate 100.0 2.2E-49 7.4E-54 294.8 8.4 131 1-132 2-132 (150)
22 1ehw_A NDPK H4, nucleoside dip 100.0 6.9E-49 2.4E-53 295.0 10.6 127 1-127 24-150 (162)
23 2dxe_A Nucleoside diphosphate 100.0 1.8E-48 6.1E-53 292.6 10.1 126 2-127 8-136 (160)
24 1zs6_A Nucleoside diphosphate 100.0 1.9E-48 6.5E-53 294.5 9.7 131 1-132 21-151 (169)
25 3b54_A NDK, NDP kinase, nucleo 100.0 1.1E-48 3.8E-53 293.8 8.3 127 1-127 13-139 (161)
26 2az3_A Nucleoside diphosphate 100.0 5.1E-48 1.7E-52 290.9 11.4 127 1-127 8-136 (164)
27 1w7w_A Nucleoside diphosphate 100.0 2.9E-48 1E-52 296.3 10.1 127 1-127 32-158 (182)
28 4dz6_A Nucleoside diphosphate 100.0 4.8E-48 1.6E-52 296.6 7.6 127 1-127 26-167 (190)
29 1xqi_A Nucleoside diphosphate 100.0 9.4E-46 3.2E-50 285.4 6.8 127 1-127 15-184 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 3.1E-32 1E-36 226.1 7.9 105 1-127 235-339 (352)
31 3p04_A Uncharacterized BCR; SE 79.5 2.5 8.6E-05 27.8 4.1 43 3-49 5-47 (87)
32 3i5g_C Myosin catalytic light 28.3 41 0.0014 23.2 2.8 32 39-70 117-154 (159)
33 1lc0_A Biliverdin reductase A; 23.4 1.1E+02 0.0038 23.3 4.8 64 4-71 68-144 (294)
34 3bkw_A MLL3908 protein, S-aden 22.8 1.2E+02 0.0041 21.5 4.6 29 18-46 194-222 (243)
35 2jwk_A Protein TOLR; periplasm 22.1 43 0.0015 19.9 1.7 27 5-31 47-74 (74)
36 1gtd_A MTH169; synthetase, FGA 21.8 1.4E+02 0.0047 18.8 4.2 34 3-38 6-40 (85)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=9.1e-52 Score=305.70 Aligned_cols=127 Identities=32% Similarity=0.594 Sum_probs=125.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 7 ~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 86 (145)
T 4hr2_A 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDA 86 (145)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred HHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+|+|++||
T Consensus 87 V~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi 133 (145)
T 4hr2_A 87 ILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEI 133 (145)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHH
T ss_pred HhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 2
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=1.9e-50 Score=299.16 Aligned_cols=127 Identities=34% Similarity=0.613 Sum_probs=125.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecC-CHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecC
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTV-DRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 79 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~l-t~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~n 79 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++ |+++|++||.+|++++||++|++||+||||++|+|+|+|
T Consensus 6 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~n 85 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD 85 (146)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETT
T ss_pred ceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCC
Confidence 6999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 80 VVKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 80 av~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
||+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+||
T Consensus 86 aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi 133 (146)
T 3evo_A 86 AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEI 133 (146)
T ss_dssp HHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998
No 3
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=1.9e-50 Score=300.66 Aligned_cols=131 Identities=43% Similarity=0.690 Sum_probs=127.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||+++++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 5 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 84 (151)
T 3mpd_A 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDA 84 (151)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred eEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+|| +.-|
T Consensus 85 V~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 135 (151)
T 3mpd_A 85 VSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEI-KLWI 135 (151)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHH-HHHT
T ss_pred HHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4444
No 4
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=2.3e-50 Score=301.70 Aligned_cols=127 Identities=48% Similarity=0.799 Sum_probs=125.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+||
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi 127 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREI 127 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHH
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 5
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=3.1e-50 Score=295.46 Aligned_cols=127 Identities=50% Similarity=0.864 Sum_probs=125.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+|+|.+|+
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi 127 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREI 127 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 6
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=5.6e-50 Score=293.78 Aligned_cols=127 Identities=45% Similarity=0.771 Sum_probs=125.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCC-CCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPA-QSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~-~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||. +|.|+|||++||.+..+|+||||||+|+|.+||
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi 129 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREI 129 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999998
No 7
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=4.4e-50 Score=299.75 Aligned_cols=127 Identities=50% Similarity=0.874 Sum_probs=125.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||+++++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 8 ~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 87 (155)
T 3fkb_A 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGV 87 (155)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.|||
T Consensus 88 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi 134 (155)
T 3fkb_A 88 VASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREI 134 (155)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHH
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 8
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=2.1e-50 Score=297.86 Aligned_cols=127 Identities=34% Similarity=0.626 Sum_probs=125.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCC---CCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+| .|+|||++||.+..+|+||||||+++|.+||
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi 132 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEI 132 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999998
No 9
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=9.2e-50 Score=294.48 Aligned_cols=131 Identities=34% Similarity=0.611 Sum_probs=127.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+|+|.+|| +..|
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 132 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREI-AYFF 132 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHH-HHHC
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4433
No 10
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=7e-50 Score=299.92 Aligned_cols=127 Identities=54% Similarity=0.904 Sum_probs=125.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
.|+||+|||||+++++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 11 ~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 90 (161)
T 4fkx_A 11 SERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGV 90 (161)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccCh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.|||
T Consensus 91 V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI 137 (161)
T 4fkx_A 91 VKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREI 137 (161)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHH
T ss_pred HHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 11
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=9.7e-50 Score=294.91 Aligned_cols=131 Identities=39% Similarity=0.651 Sum_probs=127.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+|+|.+|| +..|
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 132 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEI-AYFF 132 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHH-HHHC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4433
No 12
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-49 Score=295.81 Aligned_cols=127 Identities=50% Similarity=0.918 Sum_probs=125.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+|+|.+||
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi 127 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREI 127 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 13
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=1.8e-49 Score=294.99 Aligned_cols=131 Identities=67% Similarity=1.050 Sum_probs=127.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||..|.|+|||++||.+..+|+||||||+++|.+|+ +..|
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 131 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEI-ALWF 131 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHH-HHHC
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4443
No 14
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=300.62 Aligned_cols=131 Identities=55% Similarity=0.921 Sum_probs=127.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 24 ~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (172)
T 3l7u_A 24 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNV 103 (172)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+|||||++|+|.+|| +.-|
T Consensus 104 V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI-~~fF 154 (172)
T 3l7u_A 104 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEI-GLWF 154 (172)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHH-HHHC
T ss_pred HHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHH-HHcC
Confidence 99999999999999999999999999999999999999999999998 4433
No 15
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=1.7e-49 Score=297.07 Aligned_cols=131 Identities=48% Similarity=0.845 Sum_probs=127.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.+|++|+||++|+++||.|+++||+++|+++|++||.++++++||++|++||+||||++|+|+|+||
T Consensus 9 ~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 88 (157)
T 1xiq_A 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDM 88 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTH
T ss_pred hheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|++|+ +..|
T Consensus 89 V~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 139 (157)
T 1xiq_A 89 VKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEI-NIWF 139 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHH-HHHC
T ss_pred hHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4333
No 16
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=5.2e-50 Score=299.32 Aligned_cols=131 Identities=46% Similarity=0.833 Sum_probs=100.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||+++++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 86 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANV 86 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTH
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+|| +.-|
T Consensus 87 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 137 (155)
T 3r9l_A 87 VSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREI-ALWF 137 (155)
T ss_dssp HHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHH-HHHC
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHH-HHcC
Confidence 99999999999999999999999999999999999999999999998 4433
No 17
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=2.1e-49 Score=294.84 Aligned_cols=131 Identities=60% Similarity=0.981 Sum_probs=127.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+|| +..|
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 132 (150)
T 1pku_A 82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEI-ALWF 132 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHH-HHHC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4443
No 18
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=4.9e-49 Score=293.77 Aligned_cols=131 Identities=57% Similarity=0.946 Sum_probs=127.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 5 ~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 84 (153)
T 1s57_A 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGV 84 (153)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+|| +..|
T Consensus 85 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 135 (153)
T 1s57_A 85 VASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREI-GLWF 135 (153)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHH-HHHS
T ss_pred HHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4333
No 19
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=4.9e-49 Score=293.17 Aligned_cols=127 Identities=54% Similarity=0.912 Sum_probs=125.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|.+++||++|++||+||||++|+|+|+||
T Consensus 3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 82 (151)
T 3bbb_A 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV 82 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+||
T Consensus 83 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi 129 (151)
T 3bbb_A 83 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEI 129 (151)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 20
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=3.9e-49 Score=294.78 Aligned_cols=127 Identities=43% Similarity=0.782 Sum_probs=125.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
||||++|||||++.++++|+||++|+++||.|+++||+++|+++|++||.++++++||++|++||+||||++|+|+|+||
T Consensus 9 ~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~na 88 (156)
T 3js9_A 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEA 88 (156)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTH
T ss_pred hhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|++||+++|||||.+|.|+|||++||.+..+|+||||||+++|+|||
T Consensus 89 V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI 135 (156)
T 3js9_A 89 IKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAAREC 135 (156)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHH
T ss_pred HHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 21
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=2.2e-49 Score=294.83 Aligned_cols=131 Identities=48% Similarity=0.833 Sum_probs=127.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+|| +.-|
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 132 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEI-GAFF 132 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHH-HHHS
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4443
No 22
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=6.9e-49 Score=295.04 Aligned_cols=127 Identities=44% Similarity=0.838 Sum_probs=125.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 24 ~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (162)
T 1ehw_A 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNV 103 (162)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+|||||++|+|.+||
T Consensus 104 V~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi 150 (162)
T 1ehw_A 104 VRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREI 150 (162)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 23
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=1.8e-48 Score=292.56 Aligned_cols=126 Identities=47% Similarity=0.812 Sum_probs=124.8
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecChh
Q 031851 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (152)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav 81 (152)
|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+|||
T Consensus 8 erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV 87 (160)
T 2dxe_A 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAV 87 (160)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHH
T ss_pred CeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCCCCCCCccccccccCCC---cEEEeCCCcccccccc
Q 031851 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGI---LSMEVTQLRVPRKKSP 127 (152)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~---N~vH~Sds~e~A~~e~ 127 (152)
+.||+++|||||.+|.|+|||++||.+..+ |+||||||+|+|.+||
T Consensus 88 ~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi 136 (160)
T 2dxe_A 88 EVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREI 136 (160)
T ss_dssp HHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999998
No 24
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.9e-48 Score=294.53 Aligned_cols=131 Identities=47% Similarity=0.860 Sum_probs=127.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 21 ~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 100 (169)
T 1zs6_A 21 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDV 100 (169)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCccccccccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSPCGSLM 132 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~~~~~~ 132 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+|+ +..|
T Consensus 101 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi-~~fF 151 (169)
T 1zs6_A 101 VRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREI-ALWF 151 (169)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHH-HHHS
T ss_pred hHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHH-HHhC
Confidence 99999999999999999999999999999999999999999999998 4333
No 25
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-48 Score=293.76 Aligned_cols=127 Identities=48% Similarity=0.847 Sum_probs=118.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 13 ~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 92 (161)
T 3b54_A 13 TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDV 92 (161)
T ss_dssp CCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEESTTH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+++|.+||
T Consensus 93 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi 139 (161)
T 3b54_A 93 VRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREI 139 (161)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 26
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=5.1e-48 Score=290.94 Aligned_cols=127 Identities=43% Similarity=0.797 Sum_probs=125.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 8 ~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 87 (164)
T 2az3_A 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADA 87 (164)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcc--cccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRV--PRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e--~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||++ +|.+||
T Consensus 88 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi 136 (164)
T 2az3_A 88 TRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREI 136 (164)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHH
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 999998
No 27
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=2.9e-48 Score=296.31 Aligned_cols=127 Identities=54% Similarity=0.981 Sum_probs=125.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus 32 ~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~na 111 (182)
T 1w7w_A 32 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGV 111 (182)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|||||.+|.|+|||++||.+..+|+||||||+|+|++||
T Consensus 112 V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi 158 (182)
T 1w7w_A 112 ITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEI 158 (182)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=4.8e-48 Score=296.62 Aligned_cols=127 Identities=33% Similarity=0.619 Sum_probs=125.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHH-----HhcCCCCHHHHHHHhccCCEEEEEE
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~-----~~~~~~~~~~l~~~~~sgpvi~l~l 75 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||. ++++++||++|++||+||||++|+|
T Consensus 26 ~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvl 105 (190)
T 4dz6_A 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVV 105 (190)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEE
T ss_pred hhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eecChhHHHHhHhCCCCCCCCCCCCccccccccC----------CCcEEEeCCCcccccccc
Q 031851 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~fg~~~----------~~N~vH~Sds~e~A~~e~ 127 (152)
+|+|||++||+++|||||.+|.|+|||++||.+. .+|+||||||+++|.|||
T Consensus 106 eG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI 167 (190)
T 4dz6_A 106 EGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREI 167 (190)
T ss_dssp EEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHH
T ss_pred ecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999998
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=9.4e-46 Score=285.39 Aligned_cols=127 Identities=34% Similarity=0.568 Sum_probs=124.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHH-------------H-----------------
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHY-------------E----------------- 50 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y-------------~----------------- 50 (152)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++|| .
T Consensus 15 ~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 94 (195)
T 1xqi_A 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 94 (195)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred hhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhcc
Confidence 4899999999999999999999999999999999999999999999999 7
Q ss_pred ---HhcCCCCHHHHHHHhccCCEEEEEEeecChhHHHHhHhCCCCCCCCCCCCccccccccCCC----------cEEEeC
Q 031851 51 ---DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGI----------LSMEVT 117 (152)
Q Consensus 51 ---~~~~~~~~~~l~~~~~sgpvi~l~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~----------N~vH~S 117 (152)
+|.+++||+.|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+ |+||||
T Consensus 95 ~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgS 174 (195)
T 1xqi_A 95 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHAS 174 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEEC
T ss_pred ccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEcC
Confidence 8899999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCcccccccc
Q 031851 118 QLRVPRKKSP 127 (152)
Q Consensus 118 ds~e~A~~e~ 127 (152)
||+++|.||+
T Consensus 175 DS~esA~rEi 184 (195)
T 1xqi_A 175 DSPSEAEREI 184 (195)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999998
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.97 E-value=3.1e-32 Score=226.11 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=101.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhcCCCCHHHHHHHhccCCEEEEEEeecCh
Q 031851 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (152)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~l~~~~~sgpvi~l~l~g~na 80 (152)
.|+||+|||||++.++++|+||++|+++||.|+++||+++++++|++||.+|. ++|++||+||||++|+|+|+||
T Consensus 235 ~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~a 309 (352)
T 3bh7_B 235 DESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGA 309 (352)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTH
T ss_pred ccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCH
Confidence 48999999999999999999999999999999999999999999999999997 6799999999999999999999
Q ss_pred hHHHHhHhCCCCCCCCCCCCccccccccCCCcEEEeCCCcccccccc
Q 031851 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGILSMEVTQLRVPRKKSP 127 (152)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~fg~~~~~N~vH~Sds~e~A~~e~ 127 (152)
|+.||+++|+|+| .|+||||||+|+|++||
T Consensus 310 v~~~R~l~g~t~p-----------------gN~vHgSds~esA~~Ei 339 (352)
T 3bh7_B 310 VEVCQLIVNEIFN-----------------GTKMFVSESKETASGDV 339 (352)
T ss_dssp HHHHHHHHHHHCT-----------------TSCEEECSCHHHHHHHH
T ss_pred HHHHHHHhcCCCC-----------------CceEEecCCHHHHHHHH
Confidence 9999999999995 29999999999999998
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=79.47 E-value=2.5 Score=27.79 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=37.1
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHH
Q 031851 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHY 49 (152)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y 49 (152)
..+++++|..+.. +.+|.+.|.+..-.|.++. .++.++|+++.
T Consensus 5 ~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRiv 47 (87)
T 3p04_A 5 STIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIV 47 (87)
T ss_dssp CSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHH
T ss_pred cEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHH
Confidence 4578999999987 7899999999989998877 66999998874
No 32
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=28.29 E-value=41 Score=23.15 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHhc------CCCCHHHHHHHhccCCE
Q 031851 39 TVDRPFAEKHYEDLS------SKPFFGSLIEYITSGPV 70 (152)
Q Consensus 39 ~lt~e~a~~~y~~~~------~~~~~~~l~~~~~sgpv 70 (152)
.+|++++.++..... |+-.|.+.+..|.+||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 479999999887542 34579999999999984
No 33
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=23.40 E-value=1.1e+02 Score=23.28 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=45.0
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEecCCHHHHHHHHHHhc--CC-----------CCHHHHHHHhccCCE
Q 031851 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSGPV 70 (152)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~y~~~~--~~-----------~~~~~l~~~~~sgpv 70 (152)
.+++.-|+..+ -++.....++|..|..-|-+.++.++++++....+ +. |.|..+.+.+.+|++
T Consensus 68 ~V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~i 143 (294)
T 1lc0_A 68 VAYICSESSSH----EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLGKEL 143 (294)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHTTCCE
T ss_pred EEEEeCCcHhH----HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHHhcCCe
Confidence 35566676554 36666777889999999999999999999877443 22 234555667778887
Q ss_pred E
Q 031851 71 V 71 (152)
Q Consensus 71 i 71 (152)
.
T Consensus 144 ~ 144 (294)
T 1lc0_A 144 L 144 (294)
T ss_dssp E
T ss_pred e
Confidence 3
No 34
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=22.80 E-value=1.2e+02 Score=21.52 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=24.4
Q ss_pred hHHHHHHHHHcCCeEEeEEEecCCHHHHH
Q 031851 18 VGEIIIRFEKKGFSLKGLKLMTVDRPFAE 46 (152)
Q Consensus 18 ~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~ 46 (152)
..++.+.++++||.++.......+++...
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 222 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFCPTDAQIT 222 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCHHHHH
T ss_pred HHHHHHHHHHcCCEeeeeccCCCchHhhh
Confidence 57888999999999999999888776543
No 35
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=22.14 E-value=43 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=17.5
Q ss_pred EEEEcCc-ccccCchHHHHHHHHHcCCe
Q 031851 5 FIMIKPD-GVQRGLVGEIIIRFEKKGFS 31 (152)
Q Consensus 5 l~lIKPd-a~~~~~~g~Ii~~i~~~Gf~ 31 (152)
-++|++| .+..+.+-.+++.+.++|+.
T Consensus 47 ~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 47 LFLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 4677777 34444566677777777763
No 36
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=21.76 E-value=1.4e+02 Score=18.76 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=24.9
Q ss_pred EEEEEEcCcccccCchH-HHHHHHHHcCCeEEeEEEe
Q 031851 3 QTFIMIKPDGVQRGLVG-EIIIRFEKKGFSLKGLKLM 38 (152)
Q Consensus 3 ~tl~lIKPda~~~~~~g-~Ii~~i~~~Gf~I~~~k~~ 38 (152)
+-.+.+||..++. -| .|...|...||.+...|..
T Consensus 6 ~V~V~lK~gVlDp--qG~av~~al~~LG~~v~~VR~g 40 (85)
T 1gtd_A 6 EVRIRLKKGMLNP--EAATIERALALLGYEVEDTDTT 40 (85)
T ss_dssp EEEEEECTTSCCH--HHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEECCCCcCc--HHHHHHHHHHHcCCChheEEEE
Confidence 3467889998876 56 5777888889877666653
Done!