Query 031854
Match_columns 152
No_of_seqs 123 out of 247
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:44:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_N S27A, YS15, 40S ribosom 100.0 1.8E-79 6E-84 483.2 12.4 136 1-136 1-136 (151)
2 2xzm_O RPS13E; ribosome, trans 100.0 1.8E-79 6.1E-84 483.9 12.3 137 1-137 1-139 (153)
3 3j20_Q 30S ribosomal protein S 100.0 8.6E-67 2.9E-71 413.4 11.7 135 1-135 1-142 (158)
4 4a5u_B 30S ribosomal protein S 98.1 1.6E-06 5.5E-11 62.7 3.8 45 89-133 29-73 (88)
5 3ulw_A 30S ribosomal protein S 98.1 1E-06 3.5E-11 64.3 2.6 46 88-133 32-77 (93)
6 1a32_A Ribosomal protein S15; 97.9 4.8E-05 1.6E-09 54.9 7.5 63 71-133 7-73 (88)
7 2vqe_O 30S ribosomal protein S 97.8 4.7E-05 1.6E-09 55.1 6.0 63 71-133 8-74 (89)
8 3r8n_O 30S ribosomal protein S 97.6 5.3E-05 1.8E-09 54.7 3.9 46 88-133 28-73 (88)
9 3bbn_O Ribosomal protein S15; 97.4 3.3E-05 1.1E-09 56.2 1.2 47 88-134 26-72 (90)
10 1ynp_A Oxidoreductase, AKR11C1 81.6 2.2 7.6E-05 34.7 5.3 71 23-95 233-306 (317)
11 1jko_C HIN recombinase, DNA-in 80.2 1 3.6E-05 25.7 2.1 46 28-84 6-51 (52)
12 3bzy_B ESCU; auto cleavage pro 78.6 3.6 0.00012 28.7 4.8 59 21-96 16-75 (83)
13 3c01_E Surface presentation of 77.6 8.1 0.00028 27.8 6.6 68 21-105 16-84 (98)
14 2l8n_A Transcriptional repress 77.2 1.2 4.1E-05 29.4 2.0 44 37-83 12-56 (67)
15 3m66_A Mterf3, mterf domain-co 76.9 2.1 7.2E-05 33.7 3.6 70 21-93 24-98 (270)
16 3t7y_A YOP proteins translocat 76.9 4 0.00014 29.4 4.8 60 21-97 31-91 (97)
17 1pul_A Hypothetical protein C3 74.7 2.7 9.4E-05 31.7 3.6 46 21-81 12-57 (125)
18 4dfk_A DNA polymerase I, therm 74.1 3.4 0.00012 37.0 4.6 35 30-64 175-212 (540)
19 2vt1_B Surface presentation of 73.1 3.8 0.00013 29.3 3.9 65 21-102 16-81 (93)
20 3r88_A Anthranilate phosphorib 70.8 2.1 7.1E-05 36.8 2.4 49 6-54 7-65 (377)
21 2jlj_A YSCU, YOP proteins tran 70.0 6.3 0.00022 30.2 4.7 67 21-104 69-136 (144)
22 4fp9_B Mterf domain-containing 69.2 7.8 0.00027 32.7 5.5 61 29-95 42-102 (335)
23 1u78_A TC3 transposase, transp 68.3 8.3 0.00028 26.3 4.6 45 27-80 60-105 (141)
24 3hot_A Transposable element ma 67.7 4.4 0.00015 31.9 3.5 36 25-60 3-38 (345)
25 2dmp_A Zinc fingers and homeob 67.1 12 0.00041 25.4 5.3 51 10-60 1-52 (89)
26 3bzs_A ESCU; auto cleavage pro 66.1 7.7 0.00026 29.5 4.5 60 21-97 70-130 (137)
27 2d8c_A Phosphatidylcholine:cer 64.6 14 0.00049 26.1 5.4 73 10-99 1-81 (97)
28 2kfn_A Klenow fragment of DNA 63.8 6.7 0.00023 35.0 4.3 47 30-76 240-295 (605)
29 1uxc_A FRUR (1-57), fructose r 62.8 5.6 0.00019 25.9 2.8 42 43-84 10-51 (65)
30 2kd1_A DNA integration/recombi 61.6 6.4 0.00022 25.7 2.9 30 26-55 49-78 (118)
31 2kkp_A Phage integrase; SAM-li 61.6 7.4 0.00025 25.1 3.2 30 25-54 50-79 (117)
32 3pv8_A DNA polymerase I; DNA p 60.9 9.9 0.00034 34.4 4.9 60 30-89 227-291 (592)
33 2jli_A YSCU, YOP proteins tran 60.2 11 0.00037 28.2 4.2 58 21-95 60-118 (123)
34 2key_A Putative phage integras 58.9 10 0.00035 24.4 3.5 52 24-86 48-100 (112)
35 3nrw_A Phage integrase/site-sp 57.8 9.5 0.00032 25.5 3.3 53 24-87 50-102 (117)
36 3eau_A Voltage-gated potassium 55.1 14 0.00048 29.6 4.4 62 33-96 254-321 (327)
37 1zbm_A Hypothetical protein AF 55.0 3.1 0.00011 31.5 0.5 22 70-91 259-280 (280)
38 2i4r_A V-type ATP synthase sub 54.8 3.1 0.0001 29.8 0.4 28 27-58 35-62 (102)
39 3n2t_A Putative oxidoreductase 53.5 24 0.00083 28.8 5.7 63 33-97 265-330 (348)
40 2ba3_A NIKA; dimer, bacterial 53.2 6.9 0.00023 23.8 1.8 41 8-50 3-44 (51)
41 3gdw_A Sigma-54 interaction do 52.0 31 0.001 25.4 5.5 75 26-102 40-129 (139)
42 2zze_A Alanyl-tRNA synthetase; 51.9 15 0.00052 34.7 4.7 56 33-94 434-491 (752)
43 1tc3_C Protein (TC3 transposas 51.9 11 0.00038 20.6 2.4 26 28-54 6-31 (51)
44 2vz4_A Tipal, HTH-type transcr 51.6 22 0.00075 24.5 4.4 41 16-56 28-70 (108)
45 4dyq_A Gene 1 protein; GP1, oc 50.9 31 0.0011 24.9 5.4 57 27-100 12-68 (140)
46 1u78_A TC3 transposase, transp 50.9 23 0.00078 24.0 4.4 26 28-54 7-32 (141)
47 3v0s_A Perakine reductase; AKR 50.5 16 0.00056 29.6 4.2 62 33-96 244-309 (337)
48 3neh_A Renal dipeptidase famil 50.0 4.9 0.00017 34.0 0.9 45 21-80 269-313 (318)
49 3b1s_B Flagellar biosynthetic 54.3 3.7 0.00013 29.0 0.0 60 21-97 16-76 (87)
50 2dk5_A DNA-directed RNA polyme 46.4 29 0.00098 23.9 4.3 64 10-80 1-65 (91)
51 3ly0_A Dipeptidase AC. metallo 46.4 16 0.00055 31.5 3.6 43 22-78 312-354 (364)
52 2kw0_A CCMH protein; oxidoredu 44.0 13 0.00044 26.6 2.3 30 30-59 42-71 (90)
53 3b0z_B Flagellar biosynthetic 50.0 4.8 0.00016 29.8 0.0 65 22-103 17-82 (114)
54 2ka4_B P113, signal transducer 43.6 5.4 0.00019 26.8 0.2 11 81-91 7-17 (57)
55 1lqa_A TAS protein; TIM barrel 43.4 44 0.0015 26.7 5.6 63 32-96 272-338 (346)
56 3n6q_A YGHZ aldo-keto reductas 43.0 61 0.0021 26.2 6.4 64 32-96 265-332 (346)
57 3plo_X DNA-invertase; resolvas 42.7 5.2 0.00018 30.0 0.0 26 29-55 144-169 (193)
58 3lfu_A DNA helicase II; SF1 he 42.5 15 0.0005 31.5 2.8 27 31-57 331-357 (647)
59 3fia_A Intersectin-1; EH 1 dom 42.4 96 0.0033 22.5 7.0 75 1-95 1-75 (121)
60 2hl7_A Cytochrome C-type bioge 41.3 15 0.00052 25.8 2.3 30 30-59 45-74 (84)
61 2gsv_A Hypothetical protein YV 41.1 16 0.00055 25.8 2.3 28 96-134 12-39 (80)
62 1pyf_A IOLS protein; beta-alph 40.7 35 0.0012 27.1 4.6 60 34-95 245-308 (312)
63 2cpg_A REPA protein, transcrip 40.1 14 0.00046 21.4 1.6 22 30-51 10-32 (45)
64 2ahq_A Sigma-54, RNA polymeras 39.7 28 0.00094 23.9 3.3 49 27-80 15-68 (76)
65 2cob_A LCOR protein; MLR2, KIA 39.7 38 0.0013 23.3 4.0 38 23-64 6-46 (70)
66 2xvc_A ESCRT-III, SSO0910; cel 39.0 20 0.00067 24.2 2.4 20 26-45 35-54 (59)
67 1r8d_A Transcription activator 38.2 40 0.0014 23.1 4.1 41 16-56 29-71 (109)
68 3id7_A Dipeptidase; streptomyc 37.7 30 0.001 30.1 4.1 44 21-78 326-369 (400)
69 3lut_A Voltage-gated potassium 37.5 23 0.0008 29.0 3.2 62 33-96 288-355 (367)
70 3g2b_A Coenzyme PQQ synthesis 37.4 18 0.0006 25.3 2.1 52 28-80 39-92 (95)
71 1gve_A Aflatoxin B1 aldehyde r 37.4 70 0.0024 25.5 5.9 65 33-97 240-316 (327)
72 1k78_A Paired box protein PAX5 37.3 39 0.0013 23.6 3.9 50 27-81 90-145 (149)
73 3m66_A Mterf3, mterf domain-co 37.1 58 0.002 25.3 5.3 36 22-57 65-100 (270)
74 1pdo_A Mannose permease; phosp 36.2 33 0.0011 24.5 3.4 70 25-97 36-119 (135)
75 3kjx_A Transcriptional regulat 35.8 22 0.00076 27.6 2.6 37 43-82 20-56 (344)
76 3eus_A DNA-binding protein; st 35.6 43 0.0015 21.5 3.7 31 44-80 38-68 (86)
77 3gx1_A LIN1832 protein; APC633 35.6 82 0.0028 22.7 5.6 70 26-98 40-122 (130)
78 2pju_A Propionate catabolism o 35.6 48 0.0016 26.3 4.6 37 28-64 138-177 (225)
79 3v7n_A Threonine synthase; ssg 35.6 21 0.00073 31.7 2.8 70 26-95 385-464 (487)
80 2v7f_A RPS19, RPS19E SSU ribos 35.4 31 0.0011 26.0 3.3 60 20-82 26-112 (150)
81 1tdp_A Carnobacteriocin B2 imm 35.3 22 0.00074 26.6 2.4 49 86-134 6-67 (111)
82 1q06_A Transcriptional regulat 35.2 29 0.001 25.0 3.1 40 17-56 28-69 (135)
83 1yfs_A Alanyl-tRNA synthetase; 35.0 55 0.0019 29.5 5.4 55 33-94 364-420 (465)
84 3erp_A Putative oxidoreductase 34.1 47 0.0016 27.1 4.5 64 32-96 282-349 (353)
85 4fp9_B Mterf domain-containing 34.1 58 0.002 27.4 5.1 64 29-95 74-137 (335)
86 1ur3_M Hypothetical oxidoreduc 33.7 76 0.0026 25.6 5.6 64 31-96 245-313 (319)
87 2r0q_C Putative transposon TN5 32.9 41 0.0014 25.2 3.7 39 32-80 163-201 (209)
88 2ztg_A Alanyl-tRNA synthetase; 32.8 49 0.0017 31.2 4.9 43 46-94 440-482 (739)
89 3tl4_X Glutaminyl-tRNA synthet 32.4 30 0.001 27.3 2.9 51 25-77 114-172 (187)
90 1vz0_A PARB, chromosome partit 32.4 73 0.0025 25.0 5.2 21 70-94 150-170 (230)
91 1wdd_S Ribulose bisphosphate c 32.3 25 0.00085 26.7 2.3 22 27-48 20-41 (128)
92 3ov9_A Nucleoprotein; orthogon 32.3 69 0.0024 26.7 5.2 76 28-131 16-92 (245)
93 2hue_C Histone H4; mini beta s 31.9 45 0.0015 22.6 3.4 23 70-93 15-37 (84)
94 2oxo_A Integrase; DNA-binding 31.9 43 0.0015 20.2 3.1 28 26-54 44-71 (103)
95 1rbl_M Ribulose 1,5 bisphospha 31.7 23 0.00079 26.0 2.0 22 27-48 19-40 (109)
96 1ylm_A Hypothetical protein BS 31.7 72 0.0025 22.6 4.7 60 49-113 51-110 (144)
97 1taf_B TFIID TBP associated fa 31.6 78 0.0027 21.3 4.5 34 69-103 10-55 (70)
98 1svd_M Ribulose bisphosphate c 31.6 27 0.00091 25.7 2.3 22 27-48 21-42 (110)
99 1pdn_C Protein (PRD paired); p 31.4 31 0.001 22.6 2.4 26 28-54 18-43 (128)
100 2q5c_A NTRC family transcripti 31.2 62 0.0021 24.6 4.5 40 29-68 127-169 (196)
101 2jpc_A SSRB; DNA binding prote 31.0 31 0.0011 20.4 2.2 41 34-80 3-43 (61)
102 1xo0_A Recombinase CRE; CRE re 30.9 45 0.0015 24.8 3.5 31 24-54 43-73 (324)
103 2jml_A DNA binding domain/tran 30.8 48 0.0016 21.5 3.3 34 24-57 41-77 (81)
104 2x48_A CAG38821; archeal virus 30.2 45 0.0016 19.5 2.9 24 30-54 18-41 (55)
105 2rin_A Putative glycine betain 30.2 54 0.0019 26.0 4.1 50 28-77 232-287 (298)
106 2i5g_A Amidohydrolase; NYSGXRC 30.0 77 0.0026 26.4 5.2 42 22-77 280-321 (325)
107 1u69_A Hypothetical protein; s 29.9 22 0.00077 26.9 1.7 33 29-62 86-118 (163)
108 1mi3_A Xylose reductase, XR; a 29.9 58 0.002 26.1 4.3 57 36-95 244-303 (322)
109 3rgc_A Possible periplasmic pr 28.9 1E+02 0.0035 23.5 5.4 56 67-133 71-127 (252)
110 1gk8_I Ribulose bisphosphate c 28.8 31 0.001 26.6 2.3 22 27-48 20-41 (140)
111 1j93_A UROD, uroporphyrinogen 28.8 56 0.0019 26.4 4.1 34 24-61 299-333 (353)
112 2hsg_A Glucose-resistance amyl 28.8 35 0.0012 26.2 2.7 37 43-82 12-48 (332)
113 3zxw_B Ribulose bisphosphate c 28.6 28 0.00095 26.0 2.0 22 27-48 18-39 (118)
114 2czl_A Hypothetical protein TT 28.6 8.3 0.00028 29.0 -0.9 63 25-89 203-271 (272)
115 2elc_A Trp D, anthranilate pho 28.5 37 0.0013 28.4 3.0 29 27-55 12-40 (329)
116 3bed_A PTS system, IIA compone 28.3 75 0.0026 22.8 4.3 67 27-98 42-121 (142)
117 2odi_A R.BCNI; endonuclease-DN 28.3 43 0.0015 27.5 3.3 34 28-61 4-47 (238)
118 3ulq_B Transcriptional regulat 28.2 33 0.0011 23.1 2.2 52 22-81 24-75 (90)
119 2kj8_A Putative prophage CPS-5 27.6 50 0.0017 21.6 3.0 49 26-86 48-96 (118)
120 1uaa_A REP helicase, protein ( 27.5 41 0.0014 29.5 3.2 43 32-82 326-369 (673)
121 3hh1_A Tetrapyrrole methylase 27.4 61 0.0021 22.4 3.5 48 29-82 64-111 (117)
122 3mva_O Transcription terminati 27.1 48 0.0017 27.0 3.4 68 22-95 75-147 (343)
123 3cz6_A DNA-binding protein RAP 27.1 48 0.0016 26.3 3.2 41 22-62 34-78 (168)
124 2kvc_A Putative uncharacterize 26.9 50 0.0017 24.2 3.1 30 27-56 38-68 (103)
125 1bgx_T TAQ DNA polymerase; DNA 26.9 16 0.00056 34.3 0.6 36 30-65 467-505 (832)
126 1k78_A Paired box protein PAX5 26.8 1.6E+02 0.0054 20.3 6.7 26 28-54 33-58 (149)
127 3mva_O Transcription terminati 26.8 36 0.0012 27.8 2.5 49 32-80 122-170 (343)
128 1itu_A Renal dipeptidase; glyc 26.7 63 0.0021 27.7 4.2 42 22-77 295-336 (369)
129 1o17_A Anthranilate PRT, anthr 26.7 42 0.0014 28.3 3.0 29 27-55 15-43 (345)
130 4hkm_A Anthranilate phosphorib 26.2 43 0.0015 28.0 3.0 28 27-54 18-45 (346)
131 2e5z_A SFRS8 protein, splicing 26.1 52 0.0018 23.3 3.0 21 21-41 12-32 (90)
132 1vqu_A Anthranilate phosphorib 26.1 43 0.0015 28.6 3.0 29 27-55 39-67 (374)
133 2oyy_A Hexameric cytochrome; a 25.9 21 0.00072 25.2 0.9 37 23-59 7-47 (76)
134 1s4d_A Uroporphyrin-III C-meth 25.9 44 0.0015 26.6 2.9 26 21-46 69-94 (280)
135 3in6_A FMN-binding protein; st 25.8 13 0.00043 28.7 -0.3 42 24-67 9-50 (148)
136 2k9i_A Plasmid PRN1, complete 25.6 34 0.0011 20.3 1.7 22 30-51 17-39 (55)
137 2kj5_A Phage integrase; GFT PS 25.5 52 0.0018 21.0 2.7 28 26-54 49-76 (116)
138 1m5y_A SurviVal protein, survi 25.3 2E+02 0.0069 23.1 6.8 30 67-99 90-119 (408)
139 1h3o_A Transcription initiatio 25.2 58 0.002 22.5 3.0 30 67-97 8-37 (75)
140 3uj3_X DNA-invertase; helix-tu 25.1 15 0.00052 27.3 0.0 41 29-80 144-184 (193)
141 2gpe_A Bifunctional protein PU 25.0 39 0.0013 20.2 1.9 21 30-50 11-32 (52)
142 1bwv_S Rubisco, protein (ribul 24.9 40 0.0014 25.8 2.3 22 27-48 13-34 (138)
143 2kiw_A INT protein; alpha, str 24.9 62 0.0021 20.5 3.0 28 26-54 42-69 (111)
144 3ff5_A PEX14P, peroxisomal bio 24.7 50 0.0017 21.6 2.4 24 33-56 30-53 (54)
145 1khd_A Anthranilate phosphorib 24.6 44 0.0015 28.1 2.8 29 27-55 25-53 (345)
146 3d1n_I POU domain, class 6, tr 24.5 57 0.0019 23.9 3.1 43 29-75 2-48 (151)
147 3k3w_A Penicillin G acylase; h 24.3 13 0.00045 29.4 -0.5 16 52-67 6-21 (196)
148 2lky_A Uncharacterized protein 24.2 58 0.002 24.2 3.1 27 27-53 40-67 (112)
149 3gpv_A Transcriptional regulat 24.2 46 0.0016 24.3 2.5 39 17-55 44-84 (148)
150 3h5t_A Transcriptional regulat 24.1 39 0.0013 26.5 2.2 44 37-83 12-57 (366)
151 2bp1_A Aflatoxin B1 aldehyde r 24.0 1.1E+02 0.0039 25.0 5.1 64 33-97 273-349 (360)
152 2nsa_A Trigger factor, TF; cha 24.0 44 0.0015 24.2 2.4 25 26-50 107-132 (170)
153 4a8e_A XER A, probable tyrosin 23.9 58 0.002 24.0 3.1 30 25-54 44-73 (292)
154 2a6c_A Helix-turn-helix motif; 23.5 87 0.003 19.8 3.5 31 24-54 10-41 (83)
155 2k4b_A Transcriptional regulat 23.3 33 0.0011 23.8 1.5 46 32-82 39-84 (99)
156 1fm2_A Glutaryl 7-aminocephalo 23.2 14 0.00046 28.7 -0.6 16 52-67 19-34 (169)
157 2inf_A URO-D, UPD, uroporphyri 23.1 63 0.0021 26.3 3.3 36 24-61 296-331 (359)
158 1qpz_A PURA, protein (purine n 22.9 52 0.0018 25.4 2.7 37 43-82 10-46 (340)
159 2ctd_A Zinc finger protein 512 22.8 1.1E+02 0.0036 20.1 3.9 28 10-37 1-28 (96)
160 3b40_A PVDM, probable dipeptid 22.8 57 0.002 28.3 3.2 36 29-77 371-406 (417)
161 1p6r_A Penicillinase repressor 22.6 29 0.00099 22.1 1.0 38 42-82 21-58 (82)
162 1rr7_A Middle operon regulator 22.5 85 0.0029 22.8 3.7 86 35-131 30-118 (129)
163 3bd1_A CRO protein; transcript 22.3 1.3E+02 0.0045 18.6 4.1 34 39-79 16-50 (79)
164 2fu4_A Ferric uptake regulatio 22.2 82 0.0028 19.8 3.2 40 43-84 32-71 (83)
165 4f0h_B Ribulose bisphosphate c 22.1 49 0.0017 25.4 2.3 22 27-48 13-34 (138)
166 3l91_A Acyl-homoserine lactone 22.0 11 0.00038 29.1 -1.3 16 52-67 11-26 (170)
167 2ay0_A Bifunctional PUTA prote 22.0 48 0.0017 21.0 2.0 21 30-50 11-32 (58)
168 1eij_A Hypothetical protein MT 21.9 51 0.0018 23.0 2.2 18 30-47 36-53 (80)
169 1cp9_A Penicillin amidohydrola 21.9 16 0.00054 29.0 -0.5 13 53-65 7-19 (205)
170 2dkl_A Trinucleotide repeat co 21.9 1.5E+02 0.0051 20.4 4.6 43 10-58 1-46 (85)
171 1bxn_I Rubisco, protein (ribul 21.7 44 0.0015 25.6 2.0 22 27-48 13-34 (139)
172 3b7h_A Prophage LP1 protein 11 21.6 99 0.0034 18.6 3.4 24 31-54 6-30 (78)
173 2dsj_A Pyrimidine-nucleoside ( 21.6 58 0.002 28.6 3.0 27 28-54 16-42 (423)
174 3gp4_A Transcriptional regulat 21.6 1.3E+02 0.0046 21.7 4.6 39 17-55 30-70 (142)
175 2w84_A Peroxisomal membrane pr 21.4 60 0.002 22.4 2.4 25 33-57 35-59 (70)
176 2kkv_A Integrase; protein stru 21.4 51 0.0017 21.5 2.1 26 26-52 49-74 (121)
177 2khq_A Integrase; all-alpha, s 21.4 60 0.0021 20.4 2.4 28 26-54 45-72 (110)
178 1pz1_A GSP69, general stress p 21.2 49 0.0017 26.7 2.3 64 32-96 243-310 (333)
179 3un6_A Hypothetical protein sa 21.0 62 0.0021 25.2 2.8 57 25-85 267-324 (341)
180 3kz3_A Repressor protein CI; f 21.0 1.6E+02 0.0053 18.2 4.4 13 44-56 36-48 (80)
181 2kj9_A Integrase; DNA_BRE_C su 20.8 79 0.0027 20.8 3.0 25 27-52 54-78 (118)
182 1afs_A 3-alpha-HSD, 3-alpha-hy 20.8 89 0.003 25.1 3.8 57 36-95 240-299 (323)
183 1x9m_A DNA polymerase; DNA plo 20.4 69 0.0024 29.1 3.4 30 46-76 332-367 (698)
184 1sfu_A 34L protein; protein/Z- 20.4 72 0.0024 22.0 2.7 20 26-45 39-58 (75)
185 2tpt_A Thymidine phosphorylase 20.4 65 0.0022 28.3 3.1 28 27-54 16-43 (440)
186 2dk8_A DNA-directed RNA polyme 20.3 85 0.0029 21.8 3.1 15 29-43 11-25 (81)
No 1
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=100.00 E-value=1.8e-79 Score=483.16 Aligned_cols=136 Identities=66% Similarity=1.069 Sum_probs=133.7
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 1 M~RMh~~~kG~S~S~~P~~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++|||+||+
T Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gl 80 (151)
T 3u5c_N 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGL 80 (151)
T ss_dssp -CCTTSSCCCCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTC
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhceee
Q 031854 81 APEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQRSFH 136 (152)
Q Consensus 81 apeIPEDL~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~~~~ 136 (152)
+|+|||||||||||||+||||||+|+||+||||+|||||||||||++|||+++++-
T Consensus 81 apeiPEDL~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP 136 (151)
T 3u5c_N 81 APEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLP 136 (151)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=100.00 E-value=1.8e-79 Score=483.92 Aligned_cols=137 Identities=64% Similarity=0.989 Sum_probs=132.1
Q ss_pred CCCCC--CCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 031854 1 MGRMH--SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (152)
Q Consensus 1 M~RMh--~~~kG~S~S~~P~~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~n 78 (152)
||||| ++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++|||+|
T Consensus 1 M~rmh~~~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~ 80 (153)
T 2xzm_O 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN 80 (153)
T ss_dssp ---CCSCSSCCCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT
T ss_pred CCCCCcCCCCCCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhceeee
Q 031854 79 GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQRSFHL 137 (152)
Q Consensus 79 GlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~~~~~ 137 (152)
|++|+|||||||||||||+||||||+|+||+||||+|||||||||||++|||+++++-+
T Consensus 81 glapeiPEDL~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~ 139 (153)
T 2xzm_O 81 GCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPP 139 (153)
T ss_dssp TCCCSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999988643
No 3
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.6e-67 Score=413.40 Aligned_cols=135 Identities=44% Similarity=0.715 Sum_probs=133.8
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeec-------chhHHH
Q 031854 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT-------GSKILR 73 (152)
Q Consensus 1 M~RMh~~~kG~S~S~~P~~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vt-------GkkI~~ 73 (152)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|| |+||++
T Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~ 80 (158)
T 3j20_Q 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR 80 (158)
T ss_dssp CCCCSSSSSCCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhcee
Q 031854 74 ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQRSF 135 (152)
Q Consensus 74 ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~~~ 135 (152)
|||+||++|+|||||++|++||++|++||+.|+||+||+|+|++++||++||.+||+++.++
T Consensus 81 iLk~~gl~p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~l 142 (158)
T 3j20_Q 81 ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKL 142 (158)
T ss_dssp HHHHHTCSCSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999865
No 4
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=98.14 E-value=1.6e-06 Score=62.71 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhc
Q 031854 89 YHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQR 133 (152)
Q Consensus 89 ~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~ 133 (152)
..|=.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus 29 A~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 73 (88)
T 4a5u_B 29 ALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999999999999999999874
No 5
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=98.12 E-value=1e-06 Score=64.31 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhc
Q 031854 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQR 133 (152)
Q Consensus 88 L~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~ 133 (152)
..-|-.+..++..|++.|+||.+|+++|..+.++-+||.+|++++.
T Consensus 32 IA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 77 (93)
T 3ulw_A 32 VALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKD 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567889999999999999999999999999999999999999874
No 6
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=97.88 E-value=4.8e-05 Score=54.90 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=52.2
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhc
Q 031854 71 ILRILKAHGLAP---EIPED-LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQR 133 (152)
Q Consensus 71 I~~ILk~nGlap---eIPED-L~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~ 133 (152)
-.+|.++.+-.+ -=||- ..-|-.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 1a32_A 7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD 73 (88)
T ss_dssp HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345666666544 45665 5677789999999999999999999999999999999999999874
No 7
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=97.77 E-value=4.7e-05 Score=55.06 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhc
Q 031854 71 ILRILKAHGLAP---EIPED-LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQR 133 (152)
Q Consensus 71 I~~ILk~nGlap---eIPED-L~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~ 133 (152)
-.+|.++.+-.+ -=||- ...|=.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 8 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d 74 (89)
T 2vqe_O 8 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED 74 (89)
T ss_dssp HHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345555555444 45565 5677789999999999999999999999999999999999999874
No 8
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=97.58 E-value=5.3e-05 Score=54.72 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhc
Q 031854 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQR 133 (152)
Q Consensus 88 L~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~ 133 (152)
...|=.+..++..|++.|+||.+|+++|...-++-+||.+|.+++.
T Consensus 28 iA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 3r8n_O 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcC
Confidence 3556778899999999999999999999999999999999999864
No 9
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.44 E-value=3.3e-05 Score=56.17 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhce
Q 031854 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQRS 134 (152)
Q Consensus 88 L~~LIkKAv~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~~ 134 (152)
...|=.+..++..|++.|+||.+|+++|...-++-+||.+|.+++..
T Consensus 26 IA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd~ 72 (90)
T 3bbn_O 26 VFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKING 72 (90)
T ss_dssp HHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45667888899999999999999999999999999999999998753
No 10
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=81.63 E-value=2.2 Score=34.69 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=47.1
Q ss_pred CCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031854 23 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 23 P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~G---Ip~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKA 95 (152)
+.|+....+++.+.+.++|+ |.||+|+-..--=++| +|.++.-+-.-|.+-++.-.. .++++|.+.-|..+
T Consensus 233 ~~~~~~~~~~~~~~l~~ia~-g~s~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~-~~Ls~ee~~~l~~~ 306 (317)
T 1ynp_A 233 EGYLNYRYDELKLLRESLPT-DRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEA-TPLTAEERQHIQKL 306 (317)
T ss_dssp CCBTTBCHHHHHHHHHHSCS-SSCHHHHHHHHHHTSTTEEEEECCCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHc-CCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 46777788888899999999 9999999876555554 232333222334444433221 68888888777665
No 11
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=80.16 E-value=1 Score=25.71 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeI 84 (152)
+++++. +.|++|...|+|.++|...| || .-..|.++|++.|+.|.+
T Consensus 6 ~~~~~~-~~i~~l~~~g~s~~~ia~~l----gv------s~~Tv~r~l~~~~~~~~~ 51 (52)
T 1jko_C 6 INKHEQ-EQISRLLEKGHPRQQLAIIF----GI------GVSTLYRYFPASSIKKRM 51 (52)
T ss_dssp SCTTHH-HHHHHHHHTTCCHHHHHHTT----SC------CHHHHHHHSCTTC-----
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH----CC------CHHHHHHHHHHccccccc
Confidence 455555 46777888999999887654 53 445678888888876643
No 12
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=78.56 E-value=3.6 Score=28.73 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=46.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv 96 (152)
.+|-=+-...+++-+.|.++|++ +|||-+.. ..+.|.|- .-.+..+||++||.-+-..+
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~e--------------~~VPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeil 75 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAEL--------------YDIPVIED---IPLARSLDKNIHKGQYITEDFFEPVAQLI 75 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCTTCBCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 35555555678889999998874 79998876 45888888 78899999999997765544
No 13
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=77.57 E-value=8.1 Score=27.79 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~iR 99 (152)
.+|-=+-.-.+++-+.|.++|++ +|||-+.. ..+.|.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (98)
T 3c01_E 16 PIPMISVYETNQRALAVRAYAEK--------------VGVPVIVD---IKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 78 (98)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCeecC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 35655555678899999998874 79998876 45888887 77899999999999888877765
Q ss_pred HHHhHc
Q 031854 100 KHLERN 105 (152)
Q Consensus 100 KHLe~n 105 (152)
--|+..
T Consensus 79 ~~l~~~ 84 (98)
T 3c01_E 79 EEVENA 84 (98)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 555543
No 14
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=77.16 E-value=1.2 Score=29.35 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCC
Q 031854 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 83 (152)
Q Consensus 37 IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlape 83 (152)
|.++|+ -|+++|-|-.+|.+. |.|..-|-.+|.++.++-|..|.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~---~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP---DKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC---CCSCHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCcc
Confidence 344454 499999999999876 45788999999999999999875
No 15
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=76.93 E-value=2.1 Score=33.72 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=44.6
Q ss_pred CCCCC----ccCChH-HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHH
Q 031854 21 TPPSW----LKISSQ-DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 93 (152)
Q Consensus 21 ~~P~W----l~~~~e-EVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIk 93 (152)
..|.| +.++.| .+...+.-|..-|+++++||.++.-.-.|=.-..-.=+...+.|++-|+. ++|+..++.
T Consensus 24 k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls---~~~i~~~l~ 98 (270)
T 3m66_A 24 KHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFS---KADVAQMVR 98 (270)
T ss_dssp TSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred hccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCC---HHHHHHHHH
Confidence 34777 788865 78888888888999999999888665333221111112345677777775 355554443
No 16
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=76.90 E-value=4 Score=29.38 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~ 97 (152)
.+|-=+-...+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-+-..+.
T Consensus 31 ~aP~VvAKG~~~~A~~I~~~A~e--------------~gVPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeiLa 91 (97)
T 3t7y_A 31 KAPWIIAMGVNLRAKRIIAEAEK--------------YGVPIMRN---VPLAHQLLDEGKELKFIPETTYEAVGEILL 91 (97)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCBTSBCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCeEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHH
Confidence 35665666778999999998874 79998876 45888887 778999999999977765543
No 17
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=74.65 E-value=2.7 Score=31.72 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGla 81 (152)
.+-+|++++.+++++.-..+++-|-+++ +.+||+.+.+++++-||-
T Consensus 12 ~~~~~~~~~~~~L~~~F~~Fa~fG~~~~---------------~~M~~k~f~K~~kD~~li 57 (125)
T 1pul_A 12 AAAAGFNWDDADVKKRWDAFTKFGAATA---------------TEMTGKNFDKWLKDAGVL 57 (125)
T ss_dssp ------CCCHHHHHHHHHHHHHHTCSSS---------------SCCCHHHHHHHHHHHTSC
T ss_pred HHHHhcCccHHHHHHHHHHHHhcCCCcc---------------ccCcHHHHHHHHHHCCCC
Confidence 4578999999999999999999887775 568888888888888876
No 18
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=74.06 E-value=3.4 Score=37.04 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCcee
Q 031854 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVK 64 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~---tpSqIG~iLRD~~GIp~VK 64 (152)
-+++++.|.+++...+ ||.|+|.+|.|..|+|..|
T Consensus 175 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~~~~ 212 (540)
T 4dfk_A 175 IARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIG 212 (540)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCC
Confidence 4677888888884433 8999999999999999766
No 19
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=73.06 E-value=3.8 Score=29.32 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~iR 99 (152)
.+|-=+-.-.+++-+.|.++|++ +|||-+.. ..+.|.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (93)
T 2vt1_B 16 PAPFISLIETNQCALAVRKYANE--------------VGIPTVRD---VKLARKLYKTHTKYSFVDFEHLDEVLRLIVWL 78 (93)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCSSEECCTTTHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHHHH
Confidence 45655556778999999999875 79998876 45888887 77899999999998887776654
Q ss_pred HHH
Q 031854 100 KHL 102 (152)
Q Consensus 100 KHL 102 (152)
.-+
T Consensus 79 ~~l 81 (93)
T 2vt1_B 79 EQV 81 (93)
T ss_dssp HHC
T ss_pred HHH
Confidence 433
No 20
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=70.76 E-value=2.1 Score=36.83 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCCCCCCCcCCCCCCCCCCCc----------cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 6 SRGKGISASALPYKRTPPSWL----------KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 6 ~~~kG~S~S~~P~~~~~P~Wl----------~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
+.+.+.-++..+-....|+|- ++|.||.++.+-.+..--+||+|||-.|
T Consensus 7 ~~~~~~~~~p~~~~~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL 65 (377)
T 3r88_A 7 SSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFA 65 (377)
T ss_dssp -----------------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 444444455555556779997 6799999999999999889999998755
No 21
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=70.00 E-value=6.3 Score=30.22 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~iR 99 (152)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+.-+||++||.-|-..+..=
T Consensus 69 ~AP~VvAKG~g~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 131 (144)
T 2jlj_A 69 PLPLVTFKYTDAQVQTVRKIAEE--------------EGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEVLRWL 131 (144)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 45655555678899999998874 79998876 45888887 78899999999998888777665
Q ss_pred HHHhH
Q 031854 100 KHLER 104 (152)
Q Consensus 100 KHLe~ 104 (152)
--|+.
T Consensus 132 ~~l~~ 136 (144)
T 2jlj_A 132 ERQNI 136 (144)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 54543
No 22
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=69.16 E-value=7.8 Score=32.73 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKA 95 (152)
...+.+..|-.|..-|++|+|||.+|.-..+|-. -+=..+...|..-|+. |||+..+|+++
T Consensus 42 ~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls---~e~V~kiL~k~ 102 (335)
T 4fp9_B 42 GSLELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLN---PEPVCVVLKKS 102 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCC---HHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCC---HHHHHHHHHhC
Confidence 4567888888899999999999999999876632 1112345567777875 56777776664
No 23
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=68.26 E-value=8.3 Score=26.27 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=30.9
Q ss_pred cCChHHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 27 KISSQDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 27 ~~~~eEVe~~IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
.+++++.+ .|+++.. .+.|+.+|-..| |+ .+.-..|.++|+++|+
T Consensus 60 ~l~~~~~~-~i~~~~~~~~~s~~~i~~~l----g~----~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDER-NVIRAASNSCKTARDIRNEL----QL----SASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHH-HHHHHHHHCCCCHHHHHHHT----TC----CSCHHHHHHHHHHTC-
T ss_pred cCCHHHHH-HHHHHHhCCCCCHHHHHHHH----CC----CccHHHHHHHHHHCCC
Confidence 45666664 4555444 558999887766 55 3566789999999997
No 24
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=67.72 E-value=4.4 Score=31.93 Aligned_cols=36 Identities=8% Similarity=-0.004 Sum_probs=32.4
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCC
Q 031854 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60 (152)
Q Consensus 25 Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GI 60 (152)
|...+..|+...|+.+.+.|.+.++|-..|...||-
T Consensus 3 ~~~~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~ 38 (345)
T 3hot_A 3 SFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGE 38 (345)
T ss_dssp --CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCS
T ss_pred cccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999984
No 25
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.06 E-value=12 Score=25.44 Aligned_cols=51 Identities=22% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCCCcCCCCCCCCCCCcc-CChHHHHHHHHHHHhcCCCcchhhhHhhhccCC
Q 031854 10 GISASALPYKRTPPSWLK-ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60 (152)
Q Consensus 10 G~S~S~~P~~~~~P~Wl~-~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GI 60 (152)
|.|+|.-|+-...|..++ +|+++++.+-..+.+.-++...--..|-.+-|+
T Consensus 1 gss~s~~~~p~~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l 52 (89)
T 2dmp_A 1 GSSGSSGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKL 52 (89)
T ss_dssp CCSSCCCCCSCCCSSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCC
Confidence 778888888777787777 899998888777776666555444444444443
No 26
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=66.14 E-value=7.7 Score=29.49 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~ 97 (152)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+.-+||++||.-|-..+.
T Consensus 70 ~AP~VvAKG~g~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 130 (137)
T 3bzs_A 70 PLPLVIETGKDAKALQIIKLAEL--------------YDIPVIED---IPLARSLYKNIHKGQYITEDFFEPVAQLIR 130 (137)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHSCTTCBCCGGGHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 45655555678899999998874 79998876 45888888 788999999999987766544
No 27
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=64.57 E-value=14 Score=26.05 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=42.2
Q ss_pred CCCCcCCCC----CCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHH----HHHcCCC
Q 031854 10 GISASALPY----KRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRI----LKAHGLA 81 (152)
Q Consensus 10 G~S~S~~P~----~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~I----Lk~nGla 81 (152)
|.|+|.-|. ...+..| ++|||.+-+.++ |+.- ..|.+ +.|+|..++.. |++-++.
T Consensus 1 ~~~~~~~~~p~~~~~~v~~W---s~edV~~WL~~~---Gl~~------Y~~~F-----~~IdG~~LL~Lt~~dLk~~~Lg 63 (97)
T 2d8c_A 1 GSSGSSGMLSARTMKEVVYW---SPKKVADWLLEN---AMPE------YCEPL-----EHFTGQDLINLTQEDFKKPPLY 63 (97)
T ss_dssp CCCSSCSCCCCSCCSCCSSC---CTTHHHHHHHHT---TCTT------TTTTT-----TTCCHHHHHTCCHHHHHSSSSS
T ss_pred CCCCCCCCCCCCCCCchhhC---CHHHHHHHHHHc---CCHH------HHHHH-----HcCCCHHHhcCCHHHHhhCCCC
Confidence 556666544 3455667 789998887653 5421 12333 44999988754 6664444
Q ss_pred CCChhhHHHHHHHHHHHH
Q 031854 82 PEIPEDLYHLIKKAVAIR 99 (152)
Q Consensus 82 peIPEDL~~LIkKAv~iR 99 (152)
-.-..+-..|....-.|+
T Consensus 64 I~~~g~rkkl~~~I~~L~ 81 (97)
T 2d8c_A 64 RVSSDNGQRLLDMIETLK 81 (97)
T ss_dssp SCSTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 444555555555444444
No 28
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=63.83 E-value=6.7 Score=35.01 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhcC---CCcchhhhHhhhccCCCceee------ecchhHHHHHH
Q 031854 30 SQDVEDNICKFAKKG---LTPSQIGVILRDSHGIAQVKS------VTGSKILRILK 76 (152)
Q Consensus 30 ~eEVe~~IvklaKkG---~tpSqIG~iLRD~~GIp~VK~------vtGkkI~~ILk 76 (152)
-+++++.|.+++-.- -||.|+|.+|-|..|+|..|. -|...+++-|.
T Consensus 240 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kktk~g~~st~~~vL~~l~ 295 (605)
T 2kfn_A 240 LAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELA 295 (605)
T ss_dssp HHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSCCCCCC----TTTCCHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCCcCCCCCccccHHHHHHHH
Confidence 456777788877432 278999999999999985442 44456666554
No 29
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=62.80 E-value=5.6 Score=25.89 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=33.3
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031854 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (152)
Q Consensus 43 kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeI 84 (152)
-|+|+|-|-.+|.+.-+=-.|..-|-.+|.++.++-|..|..
T Consensus 10 aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 10 AGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 499999999999976411156778889999999999998874
No 30
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=61.63 E-value=6.4 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.5
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~iLR 55 (152)
-++++++|.+.+..|.++|++|+.|...+.
T Consensus 49 ~~it~~~i~~~~~~l~~~g~s~~t~~~~~~ 78 (118)
T 2kd1_A 49 AKLTSLHMQNYVNSLRDEGLKRGTIEKIIK 78 (118)
T ss_dssp GGCCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467999999999999999999998876653
No 31
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=61.63 E-value=7.4 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.5
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 25 Wl~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
.-++++++|++.+..|.++|++|+.+...+
T Consensus 50 l~~It~~~i~~~~~~l~~~~~s~~t~~~~~ 79 (117)
T 2kkp_A 50 LKKLQPADIQRLYASKLESGLSPTRVRYIH 79 (117)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 356799999999999999999999887655
No 32
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=60.88 E-value=9.9 Score=34.42 Aligned_cols=60 Identities=28% Similarity=0.394 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCceee-ecchhH-HHHHHHcCCCCCChhhHH
Q 031854 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVKS-VTGSKI-LRILKAHGLAPEIPEDLY 89 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~---tpSqIG~iLRD~~GIp~VK~-vtGkkI-~~ILk~nGlapeIPEDL~ 89 (152)
-+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|. -||-+. ..+|++-.-..++++.+.
T Consensus 227 ~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~~~kktktg~st~~~vL~~l~~~~p~~~~il 291 (592)
T 3pv8_A 227 LGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENIL 291 (592)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCEETTEECCCHHHHHHTTTTCTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHH
Confidence 4677888888885433 67999999999999998653 233221 235554332344555443
No 33
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=60.18 E-value=11 Score=28.20 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=45.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKA 95 (152)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+..+||++||.-|-..
T Consensus 60 ~AP~VvAKG~~~~A~~I~~~A~e--------------~~VPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAei 118 (123)
T 2jli_A 60 PLPLVTFKYTDAQVQTVRKIAEE--------------EGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEV 118 (123)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence 35655555678889999998874 79998876 45888887 7889999999999766543
No 34
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=58.85 E-value=10 Score=24.45 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=38.8
Q ss_pred CCccCChHHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 031854 24 SWLKISSQDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPE 86 (152)
.+-++++++|++.+..|.+ +|++++-|...+.- + +.+.+.+.+.|+-..=|-
T Consensus 48 ~l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~------l-----r~~~~~a~~~~~i~~nP~ 100 (112)
T 2key_A 48 QFHELTEDFLRDYLIYMKKTLCNADSTAQRNLST------I-----KIYVSAAIKKGYMENDPF 100 (112)
T ss_dssp CTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHH------H-----HHHHHHHHHTTSCCSCHH
T ss_pred CHHHcCHHHHHHHHHHHHHccCcchhhHHHHHHH------H-----HHHHHHHHHCCCcccCCc
Confidence 3567899999999999998 99999988877652 1 246667777777555453
No 35
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=57.78 E-value=9.5 Score=25.54 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhh
Q 031854 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPED 87 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPED 87 (152)
.|.++++++|++-+..|.++|++|+-|-..|.- + +.+.+.|.+.|+-+.=|-+
T Consensus 50 ~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~------l-----r~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 50 AMRELTGWKLDEYETFRRGSDVSPATLNGEMQT------L-----KNWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp SGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH------H-----HHHHHHHHHTTSSCTTSGG
T ss_pred ChHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH------H-----HHHHHHHHHcCCcccCHHH
Confidence 577899999999999999999999988877642 1 3477788888876655543
No 36
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=55.15 E-value=14 Score=29.58 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhcc-CCCceeeecchh----HHHHHHHcCCCCCChhhHHHHHHHHH
Q 031854 33 VEDNICKFAK-KGLTPSQIGVILRDSH-GIAQVKSVTGSK----ILRILKAHGLAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 33 Ve~~IvklaK-kG~tpSqIG~iLRD~~-GIp~VK~vtGkk----I~~ILk~nGlapeIPEDL~~LIkKAv 96 (152)
..+.+.++|+ .|.||+|+-..--=++ ||.. .|.|.+ |.+-++.-++.+++++|-+.-|..+.
T Consensus 254 ~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~--vI~g~~~~~~l~en~~a~~~~~~L~~e~~~~i~~~~ 321 (327)
T 3eau_A 254 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSS--VLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 321 (327)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHSSTTCCE--EEECCSSHHHHHHHHGGGGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHhCCCCce--EEeCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3456677775 7999999987654454 5532 245544 33334333444578888888777653
No 37
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=55.03 E-value=3.1 Score=31.52 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=9.8
Q ss_pred hHHHHHHHcCCCCCChhhHHHH
Q 031854 70 KILRILKAHGLAPEIPEDLYHL 91 (152)
Q Consensus 70 kI~~ILk~nGlapeIPEDL~~L 91 (152)
.+.++|.+.|+-++-|+|+|-|
T Consensus 259 ~~~~~l~~~g~i~~~~~~~~~~ 280 (280)
T 1zbm_A 259 KLYEMAEAKGLIKMPKLDILRL 280 (280)
T ss_dssp HHHHHHHTTTCC----------
T ss_pred HHHHHHHHcCCcCCCChhhccC
Confidence 4667799999999999998864
No 38
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=54.78 E-value=3.1 Score=29.83 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~ 58 (152)
..++||+++.+.+|++.. .||+++-.|.
T Consensus 35 ~~~~ee~~~~~~~l~~~~----digIIlIte~ 62 (102)
T 2i4r_A 35 VTSDEEIVKAVEDVLKRD----DVGVVIMKQE 62 (102)
T ss_dssp CCSHHHHHHHHHHHHHCS----SEEEEEEEGG
T ss_pred CCCHHHHHHHHHHHhhCC----CeEEEEEeHH
Confidence 468899999999999874 6777766554
No 39
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=53.55 E-value=24 Score=28.81 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccCC--CceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 031854 33 VEDNICKFAK-KGLTPSQIGVILRDSHGI--AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVA 97 (152)
Q Consensus 33 Ve~~IvklaK-kG~tpSqIG~iLRD~~GI--p~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~ 97 (152)
+.+.+.++|+ .|.||+|+-+.--=++|| |.+..-+-.-|.+.++.-++ +++++.+..|..+..
T Consensus 265 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~v~~~I~g~~~~~~l~enl~a~~~--~L~~e~~~~l~~~~~ 330 (348)
T 3n2t_A 265 AMDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGW--SLTDEEKKAVDDILA 330 (348)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTTEEEEEECSSGGGGTTHHHHSSC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 4456677775 799999998764444464 55555555666666766555 799888888877753
No 40
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=53.24 E-value=6.9 Score=23.84 Aligned_cols=41 Identities=22% Similarity=0.033 Sum_probs=25.9
Q ss_pred CCCCCCcC-CCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchh
Q 031854 8 GKGISASA-LPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQI 50 (152)
Q Consensus 8 ~kG~S~S~-~P~~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqI 50 (152)
+.|.|.|. ++-.... =+.+|+||-+.+-......|+|.|+.
T Consensus 3 ~~~R~k~~~r~r~~~i--~vRlt~eE~~~l~~~A~~~g~s~Sey 44 (51)
T 2ba3_A 3 SAVRKKSEVRQKTVVR--TLRFSPVEDETIRKKAEDSGLTVSAY 44 (51)
T ss_dssp BTTBCTTCCCCCSEEE--EEEECHHHHHHHHHHHHHHTCCHHHH
T ss_pred cccCCCCCCCcCceeE--EEEECHHHHHHHHHHHHHhCCCHHHH
Confidence 46777765 3322222 25678988877776667789986653
No 41
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=52.03 E-value=31 Score=25.42 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=49.1
Q ss_pred ccCChHHHHHHHHHHHhc-------CC-------CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHH
Q 031854 26 LKISSQDVEDNICKFAKK-------GL-------TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHL 91 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKk-------G~-------tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~L 91 (152)
...++|++.+.+.++.++ |+ ||+.++..|.+..+++ |+-|+|-.+--.|+.-..+- .-.+|-.|
T Consensus 40 ~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~a~~l~~~~~~~-v~vI~gvnlpmllea~~~~~-~~~~L~el 117 (139)
T 3gdw_A 40 LTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGNMLFEETGIR-TKAITMTSTMIVLEAIRMAS-VGRSLEDI 117 (139)
T ss_dssp TTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGHHHHHHHHHCCC-EEEECSCCHHHHHHHHHHHH-TTCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHHHHHHHHhhCCC-EEEEeCCCHHHHHHHHHHhh-cCCCHHHH
Confidence 455788888888887753 32 8999999998876654 99999999876665321100 12355566
Q ss_pred HHHH-HHHHHHH
Q 031854 92 IKKA-VAIRKHL 102 (152)
Q Consensus 92 IkKA-v~iRKHL 102 (152)
+..| .+++...
T Consensus 118 ~~~~~~~~~~~~ 129 (139)
T 3gdw_A 118 YQNIQLSFESVV 129 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 6666 4554433
No 42
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=51.90 E-value=15 Score=34.73 Aligned_cols=56 Identities=30% Similarity=0.597 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCC--CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031854 33 VEDNICKFAKKGL--TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (152)
Q Consensus 33 Ve~~IvklaKkG~--tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkK 94 (152)
+++.|.++.++|- =|...-..|-|.||+|.= =+..|++|+|+.-++|++.+.+|.+
T Consensus 434 l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~d------lt~~ia~e~g~~vd~~~~F~~~m~~ 491 (752)
T 2zze_A 434 VRREIAKLKKKGIKEIPVEXLVTFYESHGLTPE------IVXEIAEKEGVKVNIPDNFYSMVAK 491 (752)
T ss_dssp HHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHH------HHHHHHTTSSCCCCCCTTHHHHHHG
T ss_pred HHHHHHHhhhcCCCccCHHHHHHHHhccCCCHH------HHHHHHHHcCCccCCcccHHHHHHH
Confidence 4455556655443 477888999999999952 1456889999999999999987754
No 43
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.87 E-value=11 Score=20.63 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
+++++. ..|+.+...|+|..+|...|
T Consensus 6 l~~~~~-~~i~~~~~~g~s~~~IA~~l 31 (51)
T 1tc3_C 6 LSDTER-AQLDVMKLLNVSLHEMSRKI 31 (51)
T ss_dssp CCHHHH-HHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH
Confidence 455554 45667788999999998765
No 44
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=51.57 E-value=22 Score=24.52 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=31.9
Q ss_pred CCCCCCCCCCccCChHHHHH--HHHHHHhcCCCcchhhhHhhh
Q 031854 16 LPYKRTPPSWLKISSQDVED--NICKFAKKGLTPSQIGVILRD 56 (152)
Q Consensus 16 ~P~~~~~P~Wl~~~~eEVe~--~IvklaKkG~tpSqIG~iLRD 56 (152)
.|.++..--.-.|+.++|+. .|..|...|+|..+|..+|.+
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 35544444556689999884 688899999999999999975
No 45
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=50.92 E-value=31 Score=24.93 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=42.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRK 100 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRK 100 (152)
+++ +|+.+.||++...|.|-.+|- ...|||.... +.+-|.++ +|+..-+++|-..+-
T Consensus 12 k~t-~e~~e~I~~~i~~G~sl~~i~----~~~~~ps~~T-----~~~W~~~~-------~ef~e~~~~Ar~~~~ 68 (140)
T 4dyq_A 12 DYM-PEVADDICSLLSSGESLLKVC----KRPGMPDKST-----VFRWLAKH-------EDFRDKYAKATEARA 68 (140)
T ss_dssp SCC-TTHHHHHHHHHHTTCCHHHHH----TSTTCCCHHH-----HHHHHHHC-------HHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHCCCcHHHHH----hcCCCCCHHH-----HHHHHHcC-------HHHHHHHHHHHHHHH
Confidence 555 467778999999999988876 3578886544 77888886 568888888866543
No 46
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.86 E-value=23 Score=24.00 Aligned_cols=26 Identities=4% Similarity=0.110 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
++.++ ...|+.|.+.|+|.++|...|
T Consensus 7 ~s~~~-r~~i~~~~~~G~s~~~ia~~l 32 (141)
T 1u78_A 7 LSDTE-RAQLDVMKLLNVSLHEMSRKI 32 (141)
T ss_dssp CCHHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 45555 456777889999999999876
No 47
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=50.54 E-value=16 Score=29.63 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 031854 33 VEDNICKFAK-KGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 33 Ve~~IvklaK-kG~tpSqIG~iLRD~~G---Ip~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv 96 (152)
+.+.+.++|+ .|.||+|+-+.--=++| +|.+..-+-..|.+-++.-++ ++++|-+..|..+.
T Consensus 244 ~~~~l~~ia~~~g~t~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~e~~~~l~~~~ 309 (337)
T 3v0s_A 244 IYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNVGALKV--XLTKEDLKEISDAV 309 (337)
T ss_dssp -CHHHHHHHHHTTSCHHHHHHHHHHTTCTTBCCCCCCSCHHHHHHHHHGGGC--CCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHhh
Confidence 3356667776 69999999876655665 455555455555555555444 78888887777654
No 48
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=50.00 E-value=4.9 Score=33.98 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=34.8
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
..|.|+. ++.+...++..|.+ |+|.++|-. |.|.+.+|+|++.|-
T Consensus 269 ~~p~gl~-d~s~~p~L~~~L~~-g~se~~i~k-------------i~g~N~lRv~~~~~~ 313 (318)
T 3neh_A 269 DHVKGLE-HVGKYQSFLETLEK-HYTKEEIEG-------------FASRNFLNHLPKEGH 313 (318)
T ss_dssp SCBBTBS-SGGGHHHHHHHHTT-TSCHHHHHH-------------HHTHHHHHTCCC---
T ss_pred CCCCCCC-CHHHHHHHHHHHHh-cCCHHHHHH-------------HHhHhHHHHHhhhcc
Confidence 3577886 78889999999999 999999865 567778888887763
No 49
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=54.26 E-value=3.7 Score=28.98 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=42.8
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk-~nGlapeIPEDL~~LIkKAv~ 97 (152)
.+|-=+-...+++-+.|.++|+ ++|||-+... .+.|.|- .-.+..+|||+||.-+-..+.
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~--------------e~~VPi~e~~---~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 76 (87)
T 3b1s_B 16 KAPVVVAKGKGTIAQKIVEIAE--------------NYSIPVVRKP---ELARALYPAVEVGKEISPKFYKAVAEIIA 76 (87)
Confidence 3454455566777777777776 4799988763 4777776 677889999999976655443
No 50
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=46.35 E-value=29 Score=23.91 Aligned_cols=64 Identities=19% Similarity=0.086 Sum_probs=37.0
Q ss_pred CCCCcC-CCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 10 GISASA-LPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 10 G~S~S~-~P~~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
|.|||. .|=....+.=++...--|-..|.+.-.+|++..+|...+ +++ .-|=.+|++-|+++|+
T Consensus 1 ~~~~~~~~~~~~~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~----~l~---~~tvt~iLk~LE~kgl 65 (91)
T 2dk5_A 1 GSSGSSGDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKS----NLP---LTEINKILKNLESKKL 65 (91)
T ss_dssp CCCCCCCCCCCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHT----TCC---HHHHHHHHHHHHHTTS
T ss_pred CCCCcCcCHHHHhhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHH----CCC---HHHHHHHHHHHHHCCC
Confidence 445543 343333343333333345555665557799998876554 444 3455678888888886
No 51
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=46.35 E-value=16 Score=31.51 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=35.0
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~n 78 (152)
.|.|+. +..+...++..|.+.|+|.++|-. |.|...+|+|++.
T Consensus 312 ~p~gl~-d~s~~p~L~~~L~~rG~se~~i~k-------------i~g~N~lRvl~~~ 354 (364)
T 3ly0_A 312 IPQGIA-DVTGLPALQAAMRAHGYDEPLMRK-------------LCHENWYGLLERT 354 (364)
T ss_dssp CCTTTC-SGGGHHHHHHHHHHHTCCHHHHHH-------------HHTHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHCCCCHHHHHH-------------HHhHhHHHHHHHH
Confidence 567776 788899999999999999998865 5677788888764
No 52
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=44.01 E-value=13 Score=26.62 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 031854 30 SQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~tpSqIG~iLRD~~G 59 (152)
+.+....|.++-+.|.|..||=..|.+.||
T Consensus 42 A~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 42 ATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 578889999999999999999999999998
No 53
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=49.96 E-value=4.8 Score=29.77 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=47.4
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHH-HHcCCCCCChhhHHHHHHHHHHHHH
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRIL-KAHGLAPEIPEDLYHLIKKAVAIRK 100 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~IL-k~nGlapeIPEDL~~LIkKAv~iRK 100 (152)
+|-=+-.-.+++-+.|.++|+ +||||-+... .+.|.| ..-.+..+||++||.-|-..+..=-
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~--------------e~gVPi~e~~---~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~ 79 (114)
T 3b0z_B 17 APKVVAKGAGLIALRIREIGA--------------EHRVPTLEAP---PLARALYRHAEIGQQIPGQLYAAVAEVLAWVW 79 (114)
Confidence 454455566777777777776 4799988764 477788 5678889999999988877766554
Q ss_pred HHh
Q 031854 101 HLE 103 (152)
Q Consensus 101 HLe 103 (152)
-|+
T Consensus 80 ~l~ 82 (114)
T 3b0z_B 80 QLK 82 (114)
Confidence 454
No 54
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=43.64 E-value=5.4 Score=26.79 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=9.5
Q ss_pred CCCChhhHHHH
Q 031854 81 APEIPEDLYHL 91 (152)
Q Consensus 81 apeIPEDL~~L 91 (152)
.|++|+||.+|
T Consensus 7 EpDLP~DL~~l 17 (57)
T 2ka4_B 7 EPDLPHDLRHL 17 (57)
T ss_dssp CCCCCHHHHTS
T ss_pred CCCccHHHHHh
Confidence 68999999865
No 55
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=43.45 E-value=44 Score=26.72 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHHH-hcCCCcchhhhHhhhccCC---CceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 031854 32 DVEDNICKFA-KKGLTPSQIGVILRDSHGI---AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 32 EVe~~Ivkla-KkG~tpSqIG~iLRD~~GI---p~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv 96 (152)
++.+.+.++| +.|.||+|+-..--=+++. |.+..-+-.-|.+.|+.-+ .+++++.+.-|..+.
T Consensus 272 ~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~enl~a~~--~~L~~e~~~~l~~~~ 338 (346)
T 1lqa_A 272 KAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLH--LELSEDVLAEIEAVH 338 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSHHHHHHHHGGGG--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Confidence 3445666676 4799999998776566652 3333333334444454433 478887777776553
No 56
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=43.01 E-value=61 Score=26.19 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-CC--CCCChhhHHHHHHHHH
Q 031854 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-GL--APEIPEDLYHLIKKAV 96 (152)
Q Consensus 32 EVe~~IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~n-Gl--apeIPEDL~~LIkKAv 96 (152)
++.+.+.++|+ .|.||+|+-+.--=+++-. +-.|.|.+=.+-|++| +. ..+++++-+..|..+.
T Consensus 265 ~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i~~~~ 332 (346)
T 3n6q_A 265 NSLRLLNEMAQQRGQSMAQMALSWLLKDDRV-TSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHI 332 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSSTTC-SEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhCCCC-cEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 44456777775 7999999987655555411 2344554433344444 32 3689998888887764
No 57
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=42.75 E-value=5.2 Score=30.03 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLR 55 (152)
+++++ +.|.+|..+|+|.++|...|-
T Consensus 144 ~~~~v-~~i~~l~~~G~s~~~Ia~~l~ 169 (193)
T 3plo_X 144 TKAEW-EQAGRLLAQGIPRKQVALIYD 169 (193)
T ss_dssp ---------------------------
T ss_pred CHHHH-HHHHHHHHCCCCHHHHHHHHC
Confidence 44554 468888889999999987764
No 58
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=42.51 E-value=15 Score=31.54 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCcchhhhHhhhc
Q 031854 31 QDVEDNICKFAKKGLTPSQIGVILRDS 57 (152)
Q Consensus 31 eEVe~~IvklaKkG~tpSqIG~iLRD~ 57 (152)
+.|.+.|.+|.++|++++.|+++.|+.
T Consensus 331 ~~ia~~I~~l~~~g~~~~diaVL~r~~ 357 (647)
T 3lfu_A 331 RFVVNRIKTWQDNGGALAECAILYRSN 357 (647)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESSG
T ss_pred HHHHHHHHHHHHcCCCccCEEEEEeCc
Confidence 346677888888999999999999984
No 59
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=42.38 E-value=96 Score=22.55 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 1 M~RMh~~~kG~S~S~~P~~~~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
||.-|..---...-..||......|. +|+||..+.-.-+.+-. + .=| .|+|..+..+|...||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~W~-it~ee~~~y~~iF~~lD--~-~dG-------------~Isg~elr~~~~~sgL 63 (121)
T 3fia_A 1 MGHHHHHHSHVAQFPTPFGGSLDTWA-ITVEERAKHDQQFHSLK--P-ISG-------------FITGDQARNFFFQSGL 63 (121)
T ss_dssp ---------------CTTSCCTTTSC-CCHHHHHHHHHHHHHTC--C-BTT-------------BEEHHHHHHHHGGGCC
T ss_pred CCccccchhHHHhccccccCCCCCCC-CCHHHHHHHHHHHHHhC--C-CCC-------------eECHHHHHHHHHHcCC
Confidence 45444444344445568888889998 68888776543333221 1 111 5899999999999987
Q ss_pred CCCChhhHHHHHHHH
Q 031854 81 APEIPEDLYHLIKKA 95 (152)
Q Consensus 81 apeIPEDL~~LIkKA 95 (152)
. .++|..++.-|
T Consensus 64 p---~~~L~~Iw~la 75 (121)
T 3fia_A 64 P---QPVLAQIWALA 75 (121)
T ss_dssp C---HHHHHHHHHHH
T ss_pred C---HHHHHHHHHHH
Confidence 5 55666666544
No 60
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=41.29 E-value=15 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 031854 30 SQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~tpSqIG~iLRD~~G 59 (152)
+.+....|.++-+.|.|..||=..|.+.||
T Consensus 45 A~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 45 AADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 567888999999999999999999999998
No 61
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=41.08 E-value=16 Score=25.75 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.3
Q ss_pred HHHHHHHhHcCCccccchhhhhhHHHHHHHHHhhhhhce
Q 031854 96 VAIRKHLERNRKDKDSKFRLILVESRIHDWLATTRRQRS 134 (152)
Q Consensus 96 v~iRKHLe~n~KD~~sK~~L~LiESkI~RL~kYYk~~~~ 134 (152)
-+++.|++-|. -|.|||-+..||+..-.
T Consensus 12 ~N~k~hi~mn~-----------~edKIhAmNaYYrsVvs 39 (80)
T 2gsv_A 12 ENLKQHIEMNQ-----------SEDKIHAMNSYYRSVVS 39 (80)
T ss_dssp HHHHHHHHHCS-----------SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----------cHhHHHHHHHHHHHHHH
Confidence 37899999988 47899999999997643
No 62
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=40.74 E-value=35 Score=27.10 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHH-hcCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031854 34 EDNICKFA-KKGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 34 e~~Ivkla-KkG~tpSqIG~iLRD~~G---Ip~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKA 95 (152)
.+.+.++| +.|.||+|+-..--=+++ +|.+..-+-.-|.+.++.-++ +++++-+.-|..+
T Consensus 245 ~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~~~~~~l~~~ 308 (312)
T 1pyf_A 245 VNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADV--TLSQEDISFIDKL 308 (312)
T ss_dssp HHTTHHHHHHTTSCHHHHHHHHHHHSTTCCCBCCCCSSHHHHHHHHGGGGC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhccC--CCCHHHHHHHHHH
Confidence 35566777 479999999876544554 344444444445555554444 7888877777654
No 63
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=40.15 E-value=14 Score=21.41 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHh-cCCCcchhh
Q 031854 30 SQDVEDNICKFAK-KGLTPSQIG 51 (152)
Q Consensus 30 ~eEVe~~IvklaK-kG~tpSqIG 51 (152)
++|+.+.+.++|+ .|.|.|++=
T Consensus 10 ~~~l~~~Ld~~a~~~g~srS~~i 32 (45)
T 2cpg_A 10 SESVLENLEKMAREMGLSKSAMI 32 (45)
T ss_dssp EHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHHH
Confidence 5778888888887 699988763
No 64
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=39.72 E-value=28 Score=23.93 Aligned_cols=49 Identities=12% Similarity=0.299 Sum_probs=34.3
Q ss_pred cCChHHHHHHHHHHHhcC-----CCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 27 KISSQDVEDNICKFAKKG-----LTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG-----~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
..|.+.|.+.|.+|-..- +|-.+|-.+|.++ ||.-.+. .|.+.=++-|+
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR----TVaKYRe~l~I 68 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR----TVAKYREMLGI 68 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH----HHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH----HHHHHHHHcCC
Confidence 468899999999987654 8888888888776 7765543 34444444444
No 65
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=39.68 E-value=38 Score=23.32 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCCcc---CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCcee
Q 031854 23 PSWLK---ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVK 64 (152)
Q Consensus 23 P~Wl~---~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK 64 (152)
|.|-. ++.|++++.|.....-.+|.++-+- +||||.--
T Consensus 6 pk~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak----~yGVP~sT 46 (70)
T 2cob_A 6 SGRGRYRQYNSEILEEAISVVMSGKMSVSKAQS----IYGIPHST 46 (70)
T ss_dssp CCSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHH----HHTCCHHH
T ss_pred cccccccccCHHHHHHHHHHHHcCCccHHHHHH----HhCCChHH
Confidence 55544 4888888888776443388887664 69999743
No 66
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=39.03 E-value=20 Score=24.22 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.9
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 031854 26 LKISSQDVEDNICKFAKKGL 45 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~ 45 (152)
+..++|||-+...+|+.||+
T Consensus 35 ygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 35 YGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HCCCHHHHHHHHHHHHHTTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 45789999999999999996
No 67
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=38.17 E-value=40 Score=23.09 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=31.3
Q ss_pred CCCCCCCCCCccCChHHHHH--HHHHHHhcCCCcchhhhHhhh
Q 031854 16 LPYKRTPPSWLKISSQDVED--NICKFAKKGLTPSQIGVILRD 56 (152)
Q Consensus 16 ~P~~~~~P~Wl~~~~eEVe~--~IvklaKkG~tpSqIG~iLRD 56 (152)
.|.++..--.-.|+.++|+. .|..|...|+|..+|..+|..
T Consensus 29 ~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 29 NPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 35544445556689999985 678888899999999998864
No 68
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=37.68 E-value=30 Score=30.05 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=34.5
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~n 78 (152)
..|.++. +..+.-.++..|.+.|+|..+|-. |.|.+++|+|++.
T Consensus 326 ~~P~gl~-dvs~~p~L~~~L~~rG~se~di~k-------------i~g~N~lRvl~~v 369 (400)
T 3id7_A 326 FTPDGLG-DVSGYPNLIAELLDRGWSQSDLAK-------------LTWKNAVRVLDAA 369 (400)
T ss_dssp CCCBTCS-STTCHHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHHHhhcCCCHHHHHH-------------HHHHhHHHHHHHH
Confidence 4577775 667888999999999999998865 4677788888764
No 69
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=37.54 E-value=23 Score=29.05 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=37.9
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhh-ccCCCceeeecchhHHHHHHHc----CCCCCChhhHHHHHHHHH
Q 031854 33 VEDNICKFAK-KGLTPSQIGVILRD-SHGIAQVKSVTGSKILRILKAH----GLAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 33 Ve~~IvklaK-kG~tpSqIG~iLRD-~~GIp~VK~vtGkkI~~ILk~n----GlapeIPEDL~~LIkKAv 96 (152)
..+.+.++|+ .|.||+|+-+.--= +-||. -.|.|.+=.+-|++| ++.+++++|-+..|.++.
T Consensus 288 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~--~vI~g~~~~~~l~en~~a~~~~~~Ls~e~~~~i~~~~ 355 (367)
T 3lut_A 288 KLKELQAIAERLGCTLPQLAIAWCLRNEGVS--SVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 355 (367)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHTSTTEE--EEEECCSSHHHHHHHHTHHHHGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCc--EEecCCCCHHHHHHHHHhhcccCCCCHHHHHHHHHHH
Confidence 3456677775 79999998775433 33442 234554434444444 233589999888887663
No 70
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=37.45 E-value=18 Score=25.32 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCc--eeeecchhHHHHHHHcCC
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ--VKSVTGSKILRILKAHGL 80 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~--VK~vtGkkI~~ILk~nGl 80 (152)
+.-+++-..|.++-...-|..+|...|.++|+++. +. -.=...++.|.++|+
T Consensus 39 i~Ln~~a~~Iw~l~DG~rtv~eIv~~L~~~y~~~~e~i~-~DV~~FL~~L~~~g~ 92 (95)
T 3g2b_A 39 VELDDIALVVAQRYDGTQSLAQIAQTLAAEFDADASEIE-TDVIELTTTLHQKRL 92 (95)
T ss_dssp CCCCTHHHHHHHHCCSSSCHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHTTC
T ss_pred eecCHHHHHHHHHccCCCCHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHCcC
Confidence 35678888999999999999999999999999871 11 011235666677765
No 71
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=37.41 E-value=70 Score=25.51 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=38.7
Q ss_pred HHHHHHHHHhc-----CCCcchhhhHh-hhccCC---CceeeecchhHHHHHHHc-C-CC-CCChhhHHHHHHHHHH
Q 031854 33 VEDNICKFAKK-----GLTPSQIGVIL-RDSHGI---AQVKSVTGSKILRILKAH-G-LA-PEIPEDLYHLIKKAVA 97 (152)
Q Consensus 33 Ve~~IvklaKk-----G~tpSqIG~iL-RD~~GI---p~VK~vtGkkI~~ILk~n-G-la-peIPEDL~~LIkKAv~ 97 (152)
+.+.+.++|++ |.||+|+-+.- ..+-+| .-+-.|.|.+=.+-|++| + +. ++++++.+..|..+..
T Consensus 240 ~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~~I~g~~~~~~l~en~~a~~~~~L~~e~~~~l~~~~~ 316 (327)
T 1gve_A 240 GIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWN 316 (327)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTSSCCGGGTCEEEECCSSHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHhCCCccccCCCeEEECCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 34567777775 99999998643 343333 113445554433333433 1 22 3788988888887754
No 72
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.33 E-value=39 Score=23.57 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=32.0
Q ss_pred cCChHHHHHHHHHHHh--cCCCcchhhhHhhhcc----CCCceeeecchhHHHHHHHcCCC
Q 031854 27 KISSQDVEDNICKFAK--KGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLA 81 (152)
Q Consensus 27 ~~~~eEVe~~IvklaK--kG~tpSqIG~iLRD~~----GIp~VK~vtGkkI~~ILk~nGla 81 (152)
.++++ .++.|.++.+ .+.++.+|-..|.+++ |+. +.-..|.++|++..-.
T Consensus 90 ~~~~~-~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~----~S~sTV~r~L~~~~~~ 145 (149)
T 1k78_A 90 VATPK-VVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV----PSVSSINRIIRTKVQQ 145 (149)
T ss_dssp SSCHH-HHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTS----CCHHHHHHHHHCC---
T ss_pred CCCHH-HHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCC----cCHHHHHHHHHHHhcC
Confidence 34544 5556666654 3589999999998876 642 4456688888876543
No 73
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=37.08 E-value=58 Score=25.33 Aligned_cols=36 Identities=6% Similarity=0.245 Sum_probs=23.0
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhc
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDS 57 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~ 57 (152)
.|.=+..+.|+++..|.-|..-|+++.+|+.++.-.
T Consensus 65 ~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~ 100 (270)
T 3m66_A 65 NHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 100 (270)
T ss_dssp CTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred CChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455566666666666666666677777776665433
No 74
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=36.20 E-value=33 Score=24.54 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=45.5
Q ss_pred CccCChHHHHHHHHHHHhc--------------CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHH
Q 031854 25 WLKISSQDVEDNICKFAKK--------------GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 90 (152)
Q Consensus 25 Wl~~~~eEVe~~IvklaKk--------------G~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~ 90 (152)
+...+++++.+.|.+..++ |=||+.+...+-+.+ +.|+-|+|-++--+|+.-... ..-+++-.
T Consensus 36 ~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~n~a~~~~~~~--~~v~vi~GvNlpmlle~~~~~-~~~~~l~e 112 (135)
T 1pdo_A 36 VPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDK--EHYEVIAGVNIPMLVETLMAR-DDDPSFDE 112 (135)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTTC--TTEEEEESCCHHHHHHHHHHH-TTCCCHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHhcc--CCEEEEeCCCHHHHHHHHHhc-ccCCCHHH
Confidence 3466788888888877664 468899988887764 589999999977555532111 11134555
Q ss_pred HHHHHHH
Q 031854 91 LIKKAVA 97 (152)
Q Consensus 91 LIkKAv~ 97 (152)
+++.|+.
T Consensus 113 l~~~~~~ 119 (135)
T 1pdo_A 113 LVALAVE 119 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 75
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=35.79 E-value=22 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=31.7
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 43 kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
-|+|+|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 20 agVS~~TVSr~Ln~~---~~vs~~tr~rV~~~~~~lgY~p 56 (344)
T 3kjx_A 20 SGVSEMTVSRVLRNR---GDVSDATRARVLAAAKELGYVP 56 (344)
T ss_dssp HCCCSHHHHHHHTTC---SCCCHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCC
Confidence 499999999999876 6788999999999999988554
No 76
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=35.64 E-value=43 Score=21.49 Aligned_cols=31 Identities=6% Similarity=-0.088 Sum_probs=18.2
Q ss_pred CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 44 GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 44 G~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
|+|++.|..+-+... .| +-..+.+|.+.-|+
T Consensus 38 gis~~~is~~E~G~~-~p-----~~~~l~~ia~~l~v 68 (86)
T 3eus_A 38 DKPQSFVAKVETRER-RL-----DVIEFAKWMAACEG 68 (86)
T ss_dssp TCCHHHHHHHHTTSS-CC-----BHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHCCCC-CC-----CHHHHHHHHHHcCC
Confidence 666666666665544 22 33446667776666
No 77
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=35.64 E-value=82 Score=22.70 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=47.8
Q ss_pred ccCChHHHHHHHHHHHhc-----CC-------CcchhhhHhhhccCCCceeeecchhHHHHHHHc-CCCCCChhhHHHHH
Q 031854 26 LKISSQDVEDNICKFAKK-----GL-------TPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-GLAPEIPEDLYHLI 92 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKk-----G~-------tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~n-GlapeIPEDL~~LI 92 (152)
...+++++.+.+.+..++ |+ ||+.++..|.++.++ .|+-|+|-.+--.|+.- ... ...+|-.|+
T Consensus 40 ~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~a~~l~~~~~~-~v~vI~gvnlpmllea~~~~~--~~~~l~el~ 116 (130)
T 3gx1_A 40 LTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEELGI-RTKTVTMVSTPVVLEAMRKAS--LGRGLEDIY 116 (130)
T ss_dssp TTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTHHHHHHHHHCC-CEEEECSCCHHHHHHHHHHHH--TTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHHHHhh--cCCCHHHHH
Confidence 355788888888877653 32 899999999888765 59999999988777642 111 112555666
Q ss_pred HHHHHH
Q 031854 93 KKAVAI 98 (152)
Q Consensus 93 kKAv~i 98 (152)
..+...
T Consensus 117 ~~~~~~ 122 (130)
T 3gx1_A 117 QSCEQL 122 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 78
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=35.63 E-value=48 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHhcCCCc---chhhhHhhhccCCCcee
Q 031854 28 ISSQDVEDNICKFAKKGLTP---SQIGVILRDSHGIAQVK 64 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tp---SqIG~iLRD~~GIp~VK 64 (152)
.+.||+++.|.+|.++|+.- ..+...+=.++|+|.|-
T Consensus 138 ~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vl 177 (225)
T 2pju_A 138 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIF 177 (225)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEE
Confidence 36899999999999999764 12223344556666554
No 79
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=35.61 E-value=21 Score=31.71 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=48.2
Q ss_pred ccCChHHHHHHHHHHHhc-CCC---cchhhhHhhhcc---CCCceeeecch--hHHHH-HHHcCCCCCChhhHHHHHHHH
Q 031854 26 LKISSQDVEDNICKFAKK-GLT---PSQIGVILRDSH---GIAQVKSVTGS--KILRI-LKAHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKk-G~t---pSqIG~iLRD~~---GIp~VK~vtGk--kI~~I-Lk~nGlapeIPEDL~~LIkKA 95 (152)
...|.||+.+.|.+++++ |+- -|-+|+.--.++ +.|.|-..||. |-.+. .+.-|..|+||+.|-.|.++-
T Consensus 385 ~~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~~~~~~V~l~Ta~p~Kf~~~v~~a~~~~~~~P~~l~~l~~~~ 464 (487)
T 3v7n_A 385 GRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLRPGVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALP 464 (487)
T ss_dssp ECCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCCTTSCEEEEECBCGGGGHHHHHHHHSSCCCCCGGGTTGGGSC
T ss_pred EEECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhCCCCcEEEEecCCccccHHHHHHHhCCCCCCChHHHHHhcCc
Confidence 357999999999998874 863 344554322222 67788888876 44444 444588999999998886553
No 80
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=35.40 E-value=31 Score=26.03 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCCCCccCC----------------hHHHHHHHHHHHhcCCCcchhhhHhhhccC-------CCc----eeeecchhHH
Q 031854 20 RTPPSWLKIS----------------SQDVEDNICKFAKKGLTPSQIGVILRDSHG-------IAQ----VKSVTGSKIL 72 (152)
Q Consensus 20 ~~~P~Wl~~~----------------~eEVe~~IvklaKkG~tpSqIG~iLRD~~G-------Ip~----VK~vtGkkI~ 72 (152)
-.+|+|.++- -+.+.+.|.++.-.| .|.. .-|+.+|| -|. |-.-|=.+.+
T Consensus 26 i~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g-~~G~--~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL 102 (150)
T 2v7f_A 26 IKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDG-PVGI--ERLRTYYGGRKNRGHAPERFYKAGGSIIRKAL 102 (150)
T ss_dssp CCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHC-SBCH--HHHHHHHCC----CCCTTSCCCHHHHHHHHHH
T ss_pred CCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhC-CCCH--HHHHHHHCCCccCCcCCccccccchHHHHHHH
Confidence 3568888771 235677777777788 5554 68999998 221 1223334567
Q ss_pred HHHHHcCCCC
Q 031854 73 RILKAHGLAP 82 (152)
Q Consensus 73 ~ILk~nGlap 82 (152)
+.|++.|+--
T Consensus 103 ~~Le~~GlV~ 112 (150)
T 2v7f_A 103 QQLEAAGFVE 112 (150)
T ss_dssp HHHHHTTSEE
T ss_pred HHHHHCCCEE
Confidence 7788888643
No 81
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=35.31 E-value=22 Score=26.59 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=39.5
Q ss_pred hhHHHHHHHHH---------HHHHHHhHcCCccccchh---hhhhHHHH-HHHHHhhhhhce
Q 031854 86 EDLYHLIKKAV---------AIRKHLERNRKDKDSKFR---LILVESRI-HDWLATTRRQRS 134 (152)
Q Consensus 86 EDL~~LIkKAv---------~iRKHLe~n~KD~~sK~~---L~LiESkI-~RL~kYYk~~~~ 134 (152)
|+|+++|-+|. .+|+=|+++-|.+++... .++|-+|. +.+++||=....
T Consensus 6 q~L~~~lS~AY~DpeVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~ 67 (111)
T 1tdp_A 6 QTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKR 67 (111)
T ss_dssp HHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCC
T ss_pred HHHHHHHHHHhCCHhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcc
Confidence 68889888885 589999999999888775 88888886 568889866554
No 82
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=35.17 E-value=29 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCCCCCCCccCChHHHHH--HHHHHHhcCCCcchhhhHhhh
Q 031854 17 PYKRTPPSWLKISSQDVED--NICKFAKKGLTPSQIGVILRD 56 (152)
Q Consensus 17 P~~~~~P~Wl~~~~eEVe~--~IvklaKkG~tpSqIG~iLRD 56 (152)
|..+..--+=.|+.++|+. .|..|...|+|..+|-.+|..
T Consensus 28 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 28 PPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp CCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 4434455566789999884 678899999999999998853
No 83
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=34.95 E-value=55 Score=29.53 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCC--CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031854 33 VEDNICKFAKKGL--TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (152)
Q Consensus 33 Ve~~IvklaKkG~--tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkK 94 (152)
+++.|.++.++|- -|-..--.|-|.||.|.= =+..|++|+|+.-+.+ ..+.+|.+
T Consensus 364 l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~d------Lt~eia~e~g~~vD~~-gF~~~m~~ 420 (465)
T 1yfs_A 364 IQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD------LIDEIAREKGLGIDLE-GFQCELEE 420 (465)
T ss_dssp HHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHH------HHHHHHHTTTCEECHH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCHHHHHhhhhccCCCHH------HHHHHHHHcCCeeCHH-HHHHHHHH
Confidence 4445555655454 377888899999999952 1456889999999977 67766554
No 84
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=34.14 E-value=47 Score=27.15 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.9
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-C-C-CCCChhhHHHHHHHHH
Q 031854 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-G-L-APEIPEDLYHLIKKAV 96 (152)
Q Consensus 32 EVe~~IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~n-G-l-apeIPEDL~~LIkKAv 96 (152)
++.+.+.++|+ .|.||+|+-+.--=+++.. +-.|.|.+=.+-|++| . + ..++++|-+..|..+.
T Consensus 282 ~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i~~~~ 349 (353)
T 3erp_A 282 EKVRRLNELAARRGQKLSQMALAWVLRNDNV-TSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAIL 349 (353)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCC-CEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC-cEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 44456777775 6999999987655555421 1234454433334443 1 2 4688888888887765
No 85
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.13 E-value=58 Score=27.38 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKA 95 (152)
..+.+++.|..|..-|+++..|+.+|+-.-.|=....-.=+.-...|++-|+.. +++..++.+.
T Consensus 74 l~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~---~~i~~ll~~~ 137 (335)
T 4fp9_B 74 SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE---GKLKRVLYCC 137 (335)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT---TTHHHHHHHC
T ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH---HHHHHHHHhC
Confidence 467888889999999999999999998864332211111122355778877763 5666666654
No 86
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=33.65 E-value=76 Score=25.61 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHh-cCCCc-chhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 031854 31 QDVEDNICKFAK-KGLTP-SQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 31 eEVe~~IvklaK-kG~tp-SqIG~iLRD~~G---Ip~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv 96 (152)
.++.+.+.++|+ .|.|| +|+-..--=+++ +|.+..-+-.-|.+.++.-+ .+++++-+.-|..+.
T Consensus 245 ~~~~~~l~~ia~~~g~t~~aqvaL~w~l~~~~~~~~I~G~~~~~~l~en~~a~~--~~Ls~ee~~~l~~~~ 313 (319)
T 1ur3_M 245 QPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAET--LKMTRQQWFRIRKAA 313 (319)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHTSTTCCEEEECCSCHHHHHHHHGGGG--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHh
Confidence 345566777775 69999 999876544553 23333333334444444433 478888777776653
No 87
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=32.93 E-value=41 Score=25.22 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 32 EVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
+|...|.++..+|+|.++|...| || .-..+-++|+..+.
T Consensus 163 ~iv~~i~~~~~~G~s~~~Ia~~l----~i------s~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 163 VIYHRVVEMLEEGQAISKIAKEV----NI------TRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH----TC------CHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH----Cc------CHHHHHHHHhcccc
Confidence 35578888999999999999988 43 44567778876554
No 88
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=32.75 E-value=49 Score=31.19 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=35.0
Q ss_pred CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031854 46 TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (152)
Q Consensus 46 tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkK 94 (152)
=|-..-..|-|.||+|.= =+..|++|+|+.-++|++.+.+|.+
T Consensus 440 l~g~~af~LyDTyGfP~d------lt~~ia~e~g~~vd~~~~F~~~m~~ 482 (739)
T 2ztg_A 440 LEKDDLIELYDSHGIPVE------LAVGIAAEKGAEVEMPKDIYAELAK 482 (739)
T ss_dssp CCHHHHHHHHHHHCCCHH------HHHHHHHHTTCBCCCCTTHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCHH------HHHHHHHHcCCeeCCcccHHHHHHH
Confidence 566778889999999952 1456889999999999999977754
No 89
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=32.40 E-value=30 Score=27.32 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=40.8
Q ss_pred CccCChHHHHHHHHHHH--------hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 031854 25 WLKISSQDVEDNICKFA--------KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (152)
Q Consensus 25 Wl~~~~eEVe~~Ivkla--------KkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~ 77 (152)
-+.+|+|||++.|.++- +++|. .+|.+|-+--..|..|...|+.+-.++.+
T Consensus 114 GV~VT~EqI~~~V~~~i~~~k~~i~~~RY~--~~g~ll~~vr~~p~LkWAd~~~vK~~vD~ 172 (187)
T 3tl4_X 114 GIEITEDQVRNYVMQYIQENKERILTERYK--LVPGIFADVKNLKELKWADPRSFKPIIDQ 172 (187)
T ss_dssp TCCCCHHHHHHHHHHHHHHTHHHHHHHGGG--GHHHHHHHHHTCGGGTTSCTTSHHHHHHH
T ss_pred CeEeCHHHHHHHHHHHHHHhHHHHHHhccc--cHHHHHHHHhcccCCCCCCHHHHHHHHHH
Confidence 36789999999887765 55777 78999988888899999999887766543
No 90
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=32.40 E-value=73 Score=24.99 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=13.4
Q ss_pred hHHHHHHHcCCCCCChhhHHHHHHH
Q 031854 70 KILRILKAHGLAPEIPEDLYHLIKK 94 (152)
Q Consensus 70 kI~~ILk~nGlapeIPEDL~~LIkK 94 (152)
.|.+.|+-. .+|+++..++..
T Consensus 150 ~V~~~l~l~----~l~~~v~~~l~~ 170 (230)
T 1vz0_A 150 TVANALRLL----QLPPEALEALER 170 (230)
T ss_dssp HHHHHHHGG----GSCHHHHHHHHT
T ss_pred HHHHHHHHH----cCCHHHHHHHHc
Confidence 355555544 678888877764
No 91
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=32.32 E-value=25 Score=26.66 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-|-.+|..|+
T Consensus 20 ~lt~eqI~kQI~Yll~qGw~p~ 41 (128)
T 1wdd_S 20 PLTVEDLLKQIEYLLRSKWVPC 41 (128)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeee
Confidence 4699999999999999999887
No 92
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=32.26 E-value=69 Score=26.75 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhH-cC
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER-NR 106 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~-n~ 106 (152)
.+..+|++.+-+++=+|+.|. .|.++|++.| ..|...=+++.+-|+ |.+ |+
T Consensus 16 ~d~~~i~~~v~~faYqGFDa~---------------------~ii~~lke~G-----g~~w~~D~k~mIVl~--LtRGNk 67 (245)
T 3ov9_A 16 VDRNEIEQWVREFAYQGFDAR---------------------RVIELLKQYG-----GADWEKDAKKMIVLA--LTRGNK 67 (245)
T ss_dssp CCHHHHHHHHHHHSBCSCCHH---------------------HHHHHHHHHH-----GGGHHHHHHHHHHHH--HHTCSC
T ss_pred ccHHHHHHHHHHHHhcCCCHH---------------------HHHHHHHHHc-----chhHHHHHHHHHHHH--HhhCCC
Confidence 478899999999999999995 4566777777 344444444444433 222 22
Q ss_pred CccccchhhhhhHHHHHHHHHhhhh
Q 031854 107 KDKDSKFRLILVESRIHDWLATTRR 131 (152)
Q Consensus 107 KD~~sK~~L~LiESkI~RL~kYYk~ 131 (152)
-++-.|+--.---..+.+|+.-|+=
T Consensus 68 ~~km~kkms~eGk~~v~~Li~~Y~L 92 (245)
T 3ov9_A 68 PRRMMMKMSKEGKATVEALINKYKL 92 (245)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHhHHHHHHHHHHHhCe
Confidence 2222222222223457788877763
No 93
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=31.92 E-value=45 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=13.2
Q ss_pred hHHHHHHHcCCCCCChhhHHHHHH
Q 031854 70 KILRILKAHGLAPEIPEDLYHLIK 93 (152)
Q Consensus 70 kI~~ILk~nGlapeIPEDL~~LIk 93 (152)
.|-+|.+..|. ..|.+|.+.-+.
T Consensus 15 ~I~Riar~~Gv-~rIs~da~~~l~ 37 (84)
T 2hue_C 15 AIRRLARRGGV-KRISGLIYEETR 37 (84)
T ss_dssp HHHHHHHHTTC-CEECTTHHHHHH
T ss_pred HHHHHHHHcCc-hhccHHHHHHHH
Confidence 56777777775 445555444333
No 94
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=31.88 E-value=43 Score=20.21 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=21.1
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
-++++++|++.+..+.++| +|+.+-..+
T Consensus 44 ~~it~~~i~~~~~~l~~~~-~~~t~~~~~ 71 (103)
T 2oxo_A 44 EDITTKEIAAMLNGYIDEG-KAASAKLIR 71 (103)
T ss_dssp GGCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 4678999999999988777 666665443
No 95
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=31.74 E-value=23 Score=26.03 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-+-.+|..|+
T Consensus 19 ~lt~eqI~kQI~Yll~qGw~p~ 40 (109)
T 1rbl_M 19 PLSDRQIAAQIEYMIEQGFHPL 40 (109)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999875
No 96
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=31.68 E-value=72 Score=22.59 Aligned_cols=60 Identities=23% Similarity=0.168 Sum_probs=40.4
Q ss_pred hhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCCccccch
Q 031854 49 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113 (152)
Q Consensus 49 qIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sK~ 113 (152)
.||.-+-+..|.. .+-+-..+.++|.++|+ ||+++....++.+++|.-|-..=-+.+...
T Consensus 51 di~~~ii~~~~~~--~p~sy~d~~~~L~~~gv---i~~~~~~~~~~m~g~RN~lvH~Y~~id~~~ 110 (144)
T 1ylm_A 51 DTGNDMIDGFIMR--DPGSYDDIMDILVDEKV---VTEKEGDELKKLIAYRKTLVQQYLLADSGE 110 (144)
T ss_dssp HHHHHHHHHTTCC--CCSSGGGHHHHHHHTTS---SCHHHHHHHHHHHTTHHHHHTCGGGCCHHH
T ss_pred HHHHHHHHHcCCC--CCCCHHHHHHHHHHCCC---cCHHHHHHHHHHHHHHhHHhcCccccCHHH
Confidence 3444444455544 23445578888888887 578888899999999998866545555443
No 97
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=31.63 E-value=78 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=24.2
Q ss_pred hhHHHHHHHcCCCCCChhhHH------------HHHHHHHHHHHHHh
Q 031854 69 SKILRILKAHGLAPEIPEDLY------------HLIKKAVAIRKHLE 103 (152)
Q Consensus 69 kkI~~ILk~nGlapeIPEDL~------------~LIkKAv~iRKHLe 103 (152)
..|.+|.+..|+ +.++||.. .+++.|+.+-+|=.
T Consensus 10 ~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHak 55 (70)
T 1taf_B 10 ESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAK 55 (70)
T ss_dssp HHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457888999998 57887754 45667777777643
No 98
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=31.59 E-value=27 Score=25.73 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-+-.+|..|+
T Consensus 21 ~lt~eqI~kQV~Yll~qGw~p~ 42 (110)
T 1svd_M 21 PMNAERIRAQIKYAIAQGWSPG 42 (110)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeeE
Confidence 4699999999999999999875
No 99
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.37 E-value=31 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
++. |....|+.|.+.|+|.++|...|
T Consensus 18 ~s~-~~r~~i~~~~~~g~s~~~ia~~l 43 (128)
T 1pdn_C 18 LPN-NIRLKIVEMAADGIRPCVISRQL 43 (128)
T ss_dssp CCH-HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 45566778888999999998766
No 100
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=31.24 E-value=62 Score=24.61 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHhcCCCc---chhhhHhhhccCCCceeeecc
Q 031854 29 SSQDVEDNICKFAKKGLTP---SQIGVILRDSHGIAQVKSVTG 68 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tp---SqIG~iLRD~~GIp~VK~vtG 68 (152)
+++|+++.|.+|.++|++- ..+...+=.++|+|.|-.-+|
T Consensus 127 ~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~sg 169 (196)
T 2q5c_A 127 SEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINSG 169 (196)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECCCC
T ss_pred CHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEecC
Confidence 7899999999999999875 223345556677777765554
No 101
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.03 E-value=31 Score=20.44 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 34 EDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 34 e~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
|..|+.|.-.|+|..+|+..| ||+. .. .-.-+.++++.-|+
T Consensus 3 e~~vl~l~~~g~s~~eIA~~l----~is~-~t-V~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKLIDEGYTNHGISEKL----HISI-KT-VETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHHHTSCCSHHHHHHT----CSCH-HH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHh----CCCH-HH-HHHHHHHHHHHHCC
Confidence 456777778999999999887 4421 11 12335555555555
No 102
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=30.94 E-value=45 Score=24.77 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=26.7
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
.+.++++++|++.+..|.++|++|+-|-..+
T Consensus 43 ~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~ 73 (324)
T 1xo0_A 43 KWFPAEPEDVRDYLLYLQARGLAVKTIQQHL 73 (324)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCcCHHHHHHHH
Confidence 3678899999999999999999998876554
No 103
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=30.83 E-value=48 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCccCChHHHHH--HHHHHH-hcCCCcchhhhHhhhc
Q 031854 24 SWLKISSQDVED--NICKFA-KKGLTPSQIGVILRDS 57 (152)
Q Consensus 24 ~Wl~~~~eEVe~--~Ivkla-KkG~tpSqIG~iLRD~ 57 (152)
-.-.++.++|+. .|..|. +.|+|..+|-.+|...
T Consensus 41 g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 41 NYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp SSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred CeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 344589999974 588999 8999999999988764
No 104
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.18 E-value=45 Score=19.46 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 30 SQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
+++ .+.|..|...|+|..+|+..|
T Consensus 18 ~~~-~~~i~~l~~~g~s~~eIA~~l 41 (55)
T 2x48_A 18 DDL-VSVAHELAKMGYTVQQIANAL 41 (55)
T ss_dssp HHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 444 456677788999999998765
No 105
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=30.18 E-value=54 Score=26.03 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccC------CCceeeecchhHHHHHHH
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHG------IAQVKSVTGSKILRILKA 77 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~G------Ip~VK~vtGkkI~~ILk~ 77 (152)
++.+++.++.......|.+|.++-...-.+++ ++.|+.+.|+.-.+++++
T Consensus 232 ~~~~~~~~l~~~v~~~~~~~~~vA~~wl~~~~~~~~~wl~~~~~~~g~~~~~~~~~ 287 (298)
T 2rin_A 232 FSLQMENEIMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAVKA 287 (298)
T ss_dssp CCHHHHHHHHHHHHTTCCCHHHHHHHHHHHSGGGHHHHTTTCBCTTSSBHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHCHHHHHHHhcCCcCCCCCcHHHHHHH
Confidence 45667777777777788999988877666665 567777888777666654
No 106
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=29.96 E-value=77 Score=26.40 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~ 77 (152)
.|..+. +.+++.+++..|.+.|+|.++|-. +.|.+..|+|++
T Consensus 280 ~~~gl~-~~~~~~~l~~~L~~~G~se~~i~k-------------i~g~N~lRvl~~ 321 (325)
T 2i5g_A 280 NPLGIR-TVGEFPNLTETLLKRGMPERVVRK-------------VMGENWVRVLRD 321 (325)
T ss_dssp CCBTCS-SGGGTHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHH
T ss_pred CcccCC-CHHHHHHHHHHHHHcCCCHHHHHH-------------HHHHHHHHHHHH
Confidence 444443 678999999999999999998765 446667777765
No 107
>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=29.94 E-value=22 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCc
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ 62 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~ 62 (152)
+.+|+...--+|+..|=+..+-| .|+|.|||.=
T Consensus 86 d~~e~d~~~~~L~~~Gg~v~~~G-~v~D~fGv~W 118 (163)
T 1u69_A 86 DQAETDRLWNAIVDNGGEESACG-WCRDKWGISW 118 (163)
T ss_dssp SHHHHHHHHHHHHHTTCEECSTT-EEECTTSCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEEE-EEECCCCCEE
Confidence 57889999999986676777778 7999999864
No 108
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=29.87 E-value=58 Score=26.09 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=38.3
Q ss_pred HHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHH
Q 031854 36 NICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKA 95 (152)
Q Consensus 36 ~IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nG--lapeIPEDL~~LIkKA 95 (152)
.+.++|+ .|.||+|+-..---++| +-.|.|.+=.+-|++|= +..+++++-+..|..+
T Consensus 244 ~l~~iA~~~g~t~aqvaL~w~l~~~---~~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~ 303 (322)
T 1mi3_A 244 TIKAIAAKYNKTPAEVLLRWAAQRG---IAVIPKSNLPERLVQNRSFNTFDLTKEDFEEIAKL 303 (322)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTT---CEECCCCCSHHHHHHTTSCCSSCCCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC---CEEEcCCCCHHHHHHHHhhcCCCcCHHHHHHHHhh
Confidence 3445554 59999999887666776 45677766566666663 3357888877766544
No 109
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=28.93 E-value=1e+02 Score=23.48 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=35.0
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCCccccchhhh-hhHHHHHHHHHhhhhhc
Q 031854 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLI-LVESRIHDWLATTRRQR 133 (152)
Q Consensus 67 tGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iRKHLe~n~KD~~sK~~L~-LiESkI~RL~kYYk~~~ 133 (152)
+-....+.|+.+|+. |+++...|++-+.+++-++.--++ ... .+|.-| -.||...+
T Consensus 71 s~~~~~~~L~~~g~t---~~~~~~~ir~~l~~~~l~~~~~~~-----~v~vvtd~ei---~~yy~~~~ 127 (252)
T 3rgc_A 71 TLNAFKANLKSKNQS---YEQFRTNFKKDLEKRKLYEKIASM-----AKTDFSDDGA---KKFFEQNK 127 (252)
T ss_dssp CHHHHHHHTCC---C---HHHHHHHHHHHHHHHHHHHHHHTT-----SCCCCCHHHH---HHHHHTCG
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHhc-----cCccCCHHHH---HHHHHhCH
Confidence 445688899999986 789999999988888877654222 112 255555 36776543
No 110
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=28.80 E-value=31 Score=26.58 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-|-.+|..|+
T Consensus 20 ~lt~eqI~kQI~YlL~qGw~p~ 41 (140)
T 1gk8_I 20 PLTDEQIAAQVDYIVANGWIPC 41 (140)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEee
Confidence 4699999999999999999886
No 111
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=28.80 E-value=56 Score=26.39 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=25.0
Q ss_pred CCccCChHHHHHHHHHHHhc-CCCcchhhhHhhhccCCC
Q 031854 24 SWLKISSQDVEDNICKFAKK-GLTPSQIGVILRDSHGIA 61 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaKk-G~tpSqIG~iLRD~~GIp 61 (152)
..+.-|+|||++.|.++.+. |- . |.||=..||||
T Consensus 299 ~~l~~~~e~i~~~v~~~l~~~~~---~-g~I~~~g~gi~ 333 (353)
T 1j93_A 299 GVLFGSKEFITNRINDTVKKAGK---G-KHILNLGHGIK 333 (353)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHCS---S-SEEBCBSSCCC
T ss_pred HHHcCCHHHHHHHHHHHHHHhCC---C-CEEEeCCCCCC
Confidence 33445889999888888776 52 2 78888888887
No 112
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.76 E-value=35 Score=26.22 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=22.6
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 43 kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
-|+|.|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 12 agVS~~TVSrvln~~---~~vs~~tr~rV~~aa~~lgY~p 48 (332)
T 2hsg_A 12 ASVSMATVSRVVNGN---PNVKPSTRKKVLETIERLGYRP 48 (332)
T ss_dssp TTSCHHHHHHHHTTC---TTSCHHHHHHHHHHHHHHTCCS
T ss_pred hCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHHCCCc
Confidence 366666666666654 3456666666666666666444
No 113
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=28.63 E-value=28 Score=25.99 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-|-.+|..|+
T Consensus 18 ~Lt~eqI~kQV~yll~qGw~~~ 39 (118)
T 3zxw_B 18 PLSDAQIARQIQYAIDQGYHPC 39 (118)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCeeE
Confidence 3589999999999999999875
No 114
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=28.57 E-value=8.3 Score=28.99 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=31.3
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhh-----ccCCCceeeecc-hhHHHHHHHcCCCCCChhhHH
Q 031854 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRD-----SHGIAQVKSVTG-SKILRILKAHGLAPEIPEDLY 89 (152)
Q Consensus 25 Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD-----~~GIp~VK~vtG-kkI~~ILk~nGlapeIPEDL~ 89 (152)
|..-.++|..+.+.+.. .|+++..+-..++. .|.+.. ....+ ....+.|.+.|+-+.-|++||
T Consensus 203 ~~~~~p~e~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~l~~~~~~~~~~g~i~~~~~~~~ 271 (272)
T 2czl_A 203 YALAHPEEALDYMRAHA-QELSDEVIWAHVHTYVNAFSLDVGE-EGERAVARLFAEAEARGLAAPSPRPLF 271 (272)
T ss_dssp HHHHSGGGGHHHHHHHC-TTSCHHHHHHHHHHHCSHHHHCCHH-HHHHHHHHHHHHHHHTTSSCCCSSCSB
T ss_pred HHHHCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcccccCCH-HHHHHHHHHHHHHHHcCCCCCCccccc
Confidence 44444555544443321 36676666554432 222110 00000 235677888998888777664
No 115
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=28.49 E-value=37 Score=28.36 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=23.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iLR 55 (152)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 12 ~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~ 40 (329)
T 2elc_A 12 VLEEEEAYEVMRALMAGEVSPVRAAGLLV 40 (329)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46888888888888888888888887653
No 116
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=28.34 E-value=75 Score=22.85 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=44.4
Q ss_pred cCChHHHHHHHHHHHhc-------------CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHH
Q 031854 27 KISSQDVEDNICKFAKK-------------GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 93 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKk-------------G~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPEDL~~LIk 93 (152)
..+++++.+.|.+..++ |=||+.+...+-+.+ +.|+-|+|.++-=+|+.-.. . =.++-.++.
T Consensus 42 ~~~~~~~~~~i~~~i~~~~~~gvliLtDl~GGSp~n~a~~~~~~~--~~v~vi~GvNlpmlle~~~~-~--~~~l~el~~ 116 (142)
T 3bed_A 42 EDGLSGTQAKLAAILKEAGNVPTLVLADLXGGTPCNVAMMAMGTY--PQLRVVAGLNLAMAIEAAVS-P--VENVDELAA 116 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHCSCCEEEEESSTTSHHHHHHHHHTTTC--TTEEEEESCCHHHHHHHHHC-C--CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEECCCCHHHHHHHHHhccC--CCEEEEeCCCHHHHHHHHHc-c--CCCHHHHHH
Confidence 44566666666665543 578899988887765 58999999998777665332 1 235555666
Q ss_pred HHHHH
Q 031854 94 KAVAI 98 (152)
Q Consensus 94 KAv~i 98 (152)
.|+..
T Consensus 117 ~~~~~ 121 (142)
T 3bed_A 117 YLTQI 121 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 117
>2odi_A R.BCNI; endonuclease-DNA complex, restriction enzyme, hydrolas complex; HET: MSE; 1.45A {Brevibacillus centrosporus} PDB: 2odh_A* 2q10_A* 3imb_A
Probab=28.33 E-value=43 Score=27.50 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHhcCCC--cc--------hhhhHhhhccCCC
Q 031854 28 ISSQDVEDNICKFAKKGLT--PS--------QIGVILRDSHGIA 61 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~t--pS--------qIG~iLRD~~GIp 61 (152)
++.+|+.+.+-+.+++|.- || -||..|-|..||+
T Consensus 4 ~~k~~Li~~l~~I~~~G~i~~~s~~~r~~~~gvG~TLE~lLGI~ 47 (238)
T 2odi_A 4 WSKEEVVNKLHEIKNKGYLSVPTDMFRTDDGVVGQILERQFGVQ 47 (238)
T ss_dssp CCHHHHHHHHHHHHHTCSEECCTTTCSSCTTHHHHHHHHHTTCC
T ss_pred eeHHHHHHHHHHHHHCCCeecCcccccCCCCcHHHHHHHHhCCC
Confidence 5889999999999999999 88 4999999999996
No 118
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.23 E-value=33 Score=23.08 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGla 81 (152)
.+....+|+.|. .|+.|..+|+|..+|+..|--+. -.| -.-+.++++.-|+.
T Consensus 24 ~~~~~~Lt~rE~--~Vl~l~~~G~s~~eIA~~L~iS~--~TV----~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 24 QKEQDVLTPREC--LILQEVEKGFTNQEIADALHLSK--RSI----EYSLTSIFNKLNVG 75 (90)
T ss_dssp -----CCCHHHH--HHHHHHHTTCCHHHHHHHHTCCH--HHH----HHHHHHHHHHTTCS
T ss_pred cccccCCCHHHH--HHHHHHHcCCCHHHHHHHHCcCH--HHH----HHHHHHHHHHHCCC
Confidence 344556666655 57778889999999999885322 111 23466677777764
No 119
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=27.59 E-value=50 Score=21.60 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=31.0
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeIPE 86 (152)
-++++.+|.+.+.++.++| +|+.|-.++. .=+.+.+...+.|+-+.=|=
T Consensus 48 ~~It~~~i~~~~~~l~~~~-s~~t~~~~~~-----------~l~~~~~~Av~~~~i~~NP~ 96 (118)
T 2kj8_A 48 QDIEPMQLLEVIRRFEDRG-AMERANKARR-----------RCGEVFRYAIVTGRAKYNPA 96 (118)
T ss_dssp TSCCHHHHHHHHHHHHTTT-CHHHHHHHHH-----------HHHHHHHHHHHTTSCSCCSH
T ss_pred HHCCHHHHHHHHHHHHHcC-CHHHHHHHHH-----------HHHHHHHHHHHcCCcccCcH
Confidence 4568888888888888777 6666554432 11235555667787655553
No 120
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=27.49 E-value=41 Score=29.52 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHHHH-hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 32 DVEDNICKFA-KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 32 EVe~~Ivkla-KkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
.|.+.|.++. ..|+.++.|+++.|+..- ...|.+.|.++|+.-
T Consensus 326 ~va~~I~~l~~~~g~~~~diaVL~r~~~~--------~~~l~~~L~~~gIp~ 369 (673)
T 1uaa_A 326 RVTGELIAHHFVNKTQYKDYAILYRGNHQ--------SRVFEKFLMQNRIPY 369 (673)
T ss_dssp HHHHHHHHHHHHHCCCTTTEEEEESSSGG--------GTTHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhccCCCccCEEEEEechhh--------HHHHHHHHHHCCCCE
Confidence 3556677776 689999999999998431 234556666666543
No 121
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=27.37 E-value=61 Score=22.37 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
+.+|..+.|++++++|.+-+-+ - ..|.|.+-. +|..+.+.+.+.|+.-
T Consensus 64 ~~~~~~~~i~~~~~~G~~V~~l---~--d~GdP~i~~-~~~~l~~~~~~~gi~v 111 (117)
T 3hh1_A 64 NEERAVRQVIELLEEGSDVALV---T--DAGTPAISD-PGYTMASAAHAAGLPV 111 (117)
T ss_dssp THHHHHHHHHHHHHTTCCEEEE---E--ETTSCGGGS-TTHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHCCCeEEEE---e--cCCcCeEec-cHHHHHHHHHHCCCcE
Confidence 4567888899999999763222 1 479999966 8999999999988754
No 122
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=27.14 E-value=48 Score=27.01 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCc--eeeecchh---HHHHHHHcCCCCCChhhHHHHHHHH
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ--VKSVTGSK---ILRILKAHGLAPEIPEDLYHLIKKA 95 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~--VK~vtGkk---I~~ILk~nGlapeIPEDL~~LIkKA 95 (152)
-|..+..+++++...+.-|..-|+++++|+.++... |. ........ -..+|++-|+.. +|+..++.++
T Consensus 75 ~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~---P~iLl~s~~~~~l~p~v~fL~~lGl~~---~~i~~ll~~~ 147 (343)
T 3mva_O 75 YPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERS---PESFFRSNNNLNLENNIKFLYSVGLTR---KCLCRLLTNA 147 (343)
T ss_dssp CGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHC---SHHHHSCCCHHHHHHHHHHHHHTTCCH---HHHHHHHHHC
T ss_pred CcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHC---CHHHhCCChHhhHHHHHHHHHHhCCCH---HHHHHHHHhC
Confidence 466777777777777777777777777777776543 33 11111112 235677777643 5666555544
No 123
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=27.07 E-value=48 Score=26.33 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=34.6
Q ss_pred CCCCccC-ChHHHHHHHHHHHhcCCCcchhhhHh---hhccCCCc
Q 031854 22 PPSWLKI-SSQDVEDNICKFAKKGLTPSQIGVIL---RDSHGIAQ 62 (152)
Q Consensus 22 ~P~Wl~~-~~eEVe~~IvklaKkG~tpSqIG~iL---RD~~GIp~ 62 (152)
.|..+++ |.+|+.+.|-+.-..-|.|||+-+.+ .|.-||-.
T Consensus 34 l~~FF~~~st~e~~~kv~eii~~~~e~s~~~~Lv~~l~~e~Gi~~ 78 (168)
T 3cz6_A 34 LPLFFHFGSTRQFMDKLHEVISGDYEPSQAEKLVQDLCDETGIRK 78 (168)
T ss_dssp CGGGGGCSSHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHCBCH
T ss_pred HHHHHccCCHHHHHHHHHHHHhcccChhhHHHHHHHHHHHhCccc
Confidence 4788999 99999999999999999999998764 55677753
No 124
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=26.94 E-value=50 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchhhhHhhh
Q 031854 27 KISSQDVEDNICKFAKKG-LTPSQIGVILRD 56 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG-~tpSqIG~iLRD 56 (152)
++|.|||.+.+..|..+| .++..||+.+-+
T Consensus 38 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~ 68 (103)
T 2kvc_A 38 RLSHDEVKAVANELMRLGDFDQIDIGVVITH 68 (103)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCSSCHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 479999999999999987 455555555433
No 125
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=26.86 E-value=16 Score=34.35 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCceee
Q 031854 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVKS 65 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~---tpSqIG~iLRD~~GIp~VK~ 65 (152)
-+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|.
T Consensus 467 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kk 505 (832)
T 1bgx_T 467 IARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGK 505 (832)
T ss_dssp HHHHHHHHHHSSSSCCCCSCHHHHTTTTTTSCCCCCCCS
T ss_pred HHHHHHHHHHHhCCCcCCCCHHHHHHHHHHhcCCCCccc
Confidence 3566777777764432 79999999999999996553
No 126
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.77 E-value=1.6e+02 Score=20.31 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
++ .|....|+.+.+.|++.++|...|
T Consensus 33 ~s-~e~r~~iv~~~~~G~s~~~iA~~l 58 (149)
T 1k78_A 33 LP-DVVRQRIVELAHQGVRPCDISRQL 58 (149)
T ss_dssp CC-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 455677888888999999998866
No 127
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=26.75 E-value=36 Score=27.80 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 32 EVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
.+...|.=|..-|++.++|+.++.-.-.|=..+.-.-+...+.|++-|+
T Consensus 122 ~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv 170 (343)
T 3mva_O 122 NLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGL 170 (343)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCC
Confidence 5666677777777777777777765533322221111345566666654
No 128
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=26.74 E-value=63 Score=27.67 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=28.8
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 031854 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (152)
Q Consensus 22 ~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~ 77 (152)
.|..+. +.++...++..|.+.|+|.++|-. +.|...+|+|++
T Consensus 295 ~p~gl~-d~~~~p~l~~~L~~~G~se~~i~k-------------i~g~N~lRvl~~ 336 (369)
T 1itu_A 295 VPEGLE-DVSKYPDLIAELLRRNWTEAEVKG-------------ALADNLLRVFEA 336 (369)
T ss_dssp CCBTCS-STTCHHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHcCCCHHHHHH-------------HHhHhHHHHHHH
Confidence 344443 566778888888888888877644 556667777765
No 129
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=26.66 E-value=42 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iLR 55 (152)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 15 ~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~ 43 (345)
T 1o17_A 15 DLEINEAEELAKAIIRGEVPEILVSAILV 43 (345)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46888988888888888888888887663
No 130
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=26.20 E-value=43 Score=28.00 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=20.4
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
++|.||..+.+-.+..--+|+.|||-.|
T Consensus 18 ~Lt~eEa~~~~~~il~G~~~d~QiaAfL 45 (346)
T 4hkm_A 18 EIFHDEMVDLMRQIMRGEVSDAMVSAIL 45 (346)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4577777777777777777777777654
No 131
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=52 Score=23.27 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=13.0
Q ss_pred CCCCCccCChHHHHHHHHHHH
Q 031854 21 TPPSWLKISSQDVEDNICKFA 41 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~Ivkla 41 (152)
.++.=+-..+.||...|-++|
T Consensus 12 ~p~~~ii~PPpdir~iIdktA 32 (90)
T 2e5z_A 12 APVAAIIPPPPDVQPVIDKLA 32 (90)
T ss_dssp CCCCSCCCCCTTTHHHHHHHH
T ss_pred CCCCCccCCCHHHHHHHHHHH
Confidence 344445556667777777765
No 132
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=26.07 E-value=43 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iLR 55 (152)
.+|.||+++.+-.+..--+||.|||-.|-
T Consensus 39 ~Lt~eEa~~~~~~il~G~~~~~QiaAfL~ 67 (374)
T 1vqu_A 39 SLSRSQAAELMQGWLSEAVPPELSGAILT 67 (374)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47999999999999999999999997763
No 133
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=25.90 E-value=21 Score=25.15 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.3
Q ss_pred CCCccCChHHHHHHHHHHHhcCCCcc----hhhhHhhhccC
Q 031854 23 PSWLKISSQDVEDNICKFAKKGLTPS----QIGVILRDSHG 59 (152)
Q Consensus 23 P~Wl~~~~eEVe~~IvklaKkG~tpS----qIG~iLRD~~G 59 (152)
|+-..-+|||=-++-++||+.|+... +|-..||..|+
T Consensus 7 ptL~T~TPeeG~~LAvklaR~~vk~tQPd~evr~~lR~~Ya 47 (76)
T 2oyy_A 7 PTLVTATPQEGFDLAVKLSRIAVKKTQPDAQVRDTLRAVYE 47 (76)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred hhhhcCChHHHHHHHHHHHHHHHhccCCCHHHHHHHhHHhh
Confidence 44445599999999999999997554 46677777775
No 134
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=25.85 E-value=44 Score=26.55 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.9
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCC
Q 031854 21 TPPSWLKISSQDVEDNICKFAKKGLT 46 (152)
Q Consensus 21 ~~P~Wl~~~~eEVe~~IvklaKkG~t 46 (152)
..+.|...+.+|+.+.|++++++|..
T Consensus 69 k~~~~~~~~~~~i~~~l~~~~~~G~~ 94 (280)
T 1s4d_A 69 KRGGKPSPKQRDISLRLVELARAGNR 94 (280)
T ss_dssp CCC--CCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccccccCHHHHHHHHHHHHhCCCe
Confidence 34557777899999999999999854
No 135
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}
Probab=25.80 E-value=13 Score=28.69 Aligned_cols=42 Identities=10% Similarity=0.336 Sum_probs=36.7
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeec
Q 031854 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT 67 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vt 67 (152)
+|+....-|+.|.+-+|-+.++-|+-|.+. |.-|+|+|-.+.
T Consensus 9 ~~~~~~~~~~~~~~r~l~~~~v~~~~LATA--dkdG~PNVa~~~ 50 (148)
T 3in6_A 9 EWLEIMDRELLEKARSLINANYISTTLSTV--DRNYEVNIAVIS 50 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEEEEEE--CTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcceEEEEEc--CCCCCccEEEEe
Confidence 699999999999999999999988888875 788999998654
No 136
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.55 E-value=34 Score=20.28 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHh-cCCCcchhh
Q 031854 30 SQDVEDNICKFAK-KGLTPSQIG 51 (152)
Q Consensus 30 ~eEVe~~IvklaK-kG~tpSqIG 51 (152)
++|+.+.+..+|+ .|+|.|++=
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~i 39 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVC 39 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHH
Confidence 4556666777775 899988853
No 137
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=25.47 E-value=52 Score=21.03 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=21.6
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
-++++++|.+.+..+.++| +|+.+-.++
T Consensus 49 ~~it~~~i~~~~~~l~~~~-s~~t~~~~~ 76 (116)
T 2kj5_A 49 EDVKPRHIDDVLKAVMKRG-APSIANDTL 76 (116)
T ss_dssp SSCCHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHcc-ChHHHHHHH
Confidence 4578999999999998877 777665544
No 138
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=25.33 E-value=2e+02 Score=23.15 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=19.3
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHHHH
Q 031854 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIR 99 (152)
Q Consensus 67 tGkkI~~ILk~nGlapeIPEDL~~LIkKAv~iR 99 (152)
+-..+.+.|+.+|+. |+++...+++-+-+.
T Consensus 90 ~~~~~~~~L~~~g~t---~~~~~~~~r~~l~~~ 119 (408)
T 1m5y_A 90 TLDQMRSRLAYDGLN---YNTYRNQIRKEMIIS 119 (408)
T ss_dssp CHHHHHHHHHHHTCC---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 445577888888875 566666666554443
No 139
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=25.21 E-value=58 Score=22.52 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=23.6
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 031854 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVA 97 (152)
Q Consensus 67 tGkkI~~ILk~nGlapeIPEDL~~LIkKAv~ 97 (152)
.-++|++|.++.|+. ++++|...+|-=|+.
T Consensus 8 Lqkri~~I~~k~gl~-~~~~dv~~~iS~a~q 37 (75)
T 1h3o_A 8 LQRRILEIGKKHGIT-ELHPDVVSYVSHATQ 37 (75)
T ss_dssp HHHHHHHHHHTTTCC-EECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cCChhHHHHhHHHHH
Confidence 457899999999985 678888777776653
No 140
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=25.06 E-value=15 Score=27.25 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGl 80 (152)
+++++ +.|.+|..+|+|.++|...| || .-..+-++|++.+-
T Consensus 144 ~~~~~-~~i~~l~~~G~s~~~Ia~~l----~v------s~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 144 TKAEW-EQAGRLLAQGIPRKQVALIY----DV------ALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------------------------------
T ss_pred CHHHH-HHHHHHHHcCCCHHHHHHHH----Cc------CHHHHHHHHHHhhh
Confidence 44444 56888999999999999887 33 33446677777653
No 141
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=24.97 E-value=39 Score=20.19 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHh-cCCCcchh
Q 031854 30 SQDVEDNICKFAK-KGLTPSQI 50 (152)
Q Consensus 30 ~eEVe~~IvklaK-kG~tpSqI 50 (152)
++|+.+.+..+|+ .|.|.|+|
T Consensus 11 ~~~l~~~l~~lA~~~~rs~s~l 32 (52)
T 2gpe_A 11 DDATRERIKSAATRIDRTPHWL 32 (52)
T ss_dssp EHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHH
Confidence 5788888999988 78898886
No 142
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=24.92 E-value=40 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.8
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-+-.+|..|+
T Consensus 13 ~ltdeqI~kQI~Yll~qGw~p~ 34 (138)
T 1bwv_S 13 DLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeee
Confidence 4699999999999999999875
No 143
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=24.88 E-value=62 Score=20.46 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=20.8
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
-++++++|.+.+..|. +|++|+.+-.++
T Consensus 42 ~~It~~~i~~~~~~l~-~~~s~~t~~~~~ 69 (111)
T 2kiw_A 42 QTIKKHDYQRFVDDIS-AQYSKNYVDSIV 69 (111)
T ss_dssp GGCCHHHHHHHHHHHH-TTSCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHH-hhhCHHHHHHHH
Confidence 4578888988888886 477877766554
No 144
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.67 E-value=50 Score=21.60 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhh
Q 031854 33 VEDNICKFAKKGLTPSQIGVILRD 56 (152)
Q Consensus 33 Ve~~IvklaKkG~tpSqIG~iLRD 56 (152)
+++.|.=|-.||+|..+|-..|+-
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567888899999999999888763
No 145
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=24.59 E-value=44 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=23.3
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iLR 55 (152)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 25 ~Lt~eEa~~~~~~il~g~~~~~QiaAfL~ 53 (345)
T 1khd_A 25 SMTQEESHQLFAAIVRGELEDSQLAAALI 53 (345)
T ss_dssp CCCHHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 46888888888888888888888887653
No 146
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=24.45 E-value=57 Score=23.86 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHH----hcCCCcchhhhHhhhccCCCceeeecchhHHHHH
Q 031854 29 SSQDVEDNICKFA----KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRIL 75 (152)
Q Consensus 29 ~~eEVe~~Ivkla----KkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~IL 75 (152)
+.||+|+.+..+- +-|+|-++||..|-.-||-+ ..-..|.++-
T Consensus 2 ~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~----~Sqsti~rfe 48 (151)
T 3d1n_I 2 NMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPA----YSQSAISRFE 48 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCC----CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCC----CCcccccccc
Confidence 6788887776553 47999999999998888743 3333455553
No 147
>3k3w_A Penicillin G acylase; hydrolase; 3.31A {Alcaligenes faecalis} PDB: 3ml0_A
Probab=24.27 E-value=13 Score=29.39 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.6
Q ss_pred hHhhhccCCCceeeec
Q 031854 52 VILRDSHGIAQVKSVT 67 (152)
Q Consensus 52 ~iLRD~~GIp~VK~vt 67 (152)
.|.||.||||-|..-+
T Consensus 6 ~I~RD~~GVPHI~A~~ 21 (196)
T 3k3w_A 6 EVMRDSYGVPHVFADS 21 (196)
T ss_dssp EEEECTTCCEEEECSS
T ss_pred EEEECCCCCceEEeCC
Confidence 4689999999987544
No 148
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=24.24 E-value=58 Score=24.17 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchhhhH
Q 031854 27 KISSQDVEDNICKFAKKG-LTPSQIGVI 53 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG-~tpSqIG~i 53 (152)
.+|.|||.+.+..|..+| .++..||+.
T Consensus 40 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~ 67 (112)
T 2lky_A 40 RLTNDEIKAIAEDLEKRAHFDHIDIGVL 67 (112)
T ss_dssp TCCHHHHHHHHHHHHHHCCCSCCCSHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 579999999999999886 344444444
No 149
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.17 E-value=46 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhh
Q 031854 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 17 P~~~~~P~Wl~~~~eEVe--~~IvklaKkG~tpSqIG~iLR 55 (152)
|..+..--.=.|+.++|+ ..|..|...|+|-.+|..+|.
T Consensus 44 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 44 FLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp TCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444555667999988 568899999999999999886
No 150
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=24.14 E-value=39 Score=26.46 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC-CC
Q 031854 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA-PE 83 (152)
Q Consensus 37 IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGla-pe 83 (152)
|.+.|+ -|+|+|-+-.+|.+. |.|..-|=.+|.++.++-|-. |.
T Consensus 12 i~diA~~aGVS~~TVSrvLn~~---~~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 12 LASIAAKLGISRTTVSNAYNRP---EQLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCG---GGSCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhCCCHHHHHHHHCCC---CCCCHHHHHHHHHHHHHhCCCCCC
Confidence 344444 599999999999875 578899999999999999986 53
No 151
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=24.04 E-value=1.1e+02 Score=24.96 Aligned_cols=64 Identities=8% Similarity=-0.016 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc-----CCCcchhhhHhh-hccCC---Cceeeecchh----HHHHHHHcCCCCCChhhHHHHHHHHHH
Q 031854 33 VEDNICKFAKK-----GLTPSQIGVILR-DSHGI---AQVKSVTGSK----ILRILKAHGLAPEIPEDLYHLIKKAVA 97 (152)
Q Consensus 33 Ve~~IvklaKk-----G~tpSqIG~iLR-D~~GI---p~VK~vtGkk----I~~ILk~nGlapeIPEDL~~LIkKAv~ 97 (152)
..+.+.++|++ |.||+|+-+.-- .+-+| ..+-.|.|.+ |.+-++.-.. +++++|.+..|..+..
T Consensus 273 ~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~vI~G~~~~~~l~enl~a~~~-~~L~~e~~~~l~~~~~ 349 (360)
T 2bp1_A 273 AIALVEKALQAAYGASAPSVTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNLAATEE-GPLEPAVVDAFNQAWH 349 (360)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSSCCGGGTCEEEECCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCcccccCCCeEEECCCCHHHHHHHHHhcCC-CCCCHHHHHHHHHHHH
Confidence 34556667765 999999976433 33333 1123455544 3344433222 3688888888877643
No 152
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=24.00 E-value=44 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=18.9
Q ss_pred ccCChHHHHHHHHHHHh-cCCCcchh
Q 031854 26 LKISSQDVEDNICKFAK-KGLTPSQI 50 (152)
Q Consensus 26 l~~~~eEVe~~IvklaK-kG~tpSqI 50 (152)
+..|.+||.+.|.++|. -|++|.++
T Consensus 107 I~vsdeev~~~i~~~A~~y~~~~~~~ 132 (170)
T 2nsa_A 107 ISVNDEELEKEAEELAPFWGISPDRA 132 (170)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHH
Confidence 56788999999998886 36666654
No 153
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=23.93 E-value=58 Score=23.96 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=25.9
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 25 Wl~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
+.++++++|.+.+..|.++|++++.|-..+
T Consensus 44 ~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~ 73 (292)
T 4a8e_A 44 GHSPTARDALRFLAKLKRKGYSTRSLNLVI 73 (292)
T ss_dssp TCCSSHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 567899999999999999999998876544
No 154
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.54 E-value=87 Score=19.77 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=14.9
Q ss_pred CCccCChHHHHHHHHHHHh-cCCCcchhhhHh
Q 031854 24 SWLKISSQDVEDNICKFAK-KGLTPSQIGVIL 54 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaK-kG~tpSqIG~iL 54 (152)
.|-......+-+.|.++.+ +|+|..+++..+
T Consensus 10 ~~~~~~~~~~~~~l~~~r~~~glsq~elA~~~ 41 (83)
T 2a6c_A 10 HHHMKMRSQLLIVLQEHLRNSGLTQFKAAELL 41 (83)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCccccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333334445454544333 566666555444
No 155
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=23.26 E-value=33 Score=23.81 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 32 EVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
+|-+.|.+ +.+.|.++|...|... +.+..-|=..+++.|+++|+.-
T Consensus 39 ~VL~~L~~--~~~~t~~eL~~~l~~~---~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 39 IVMRVIWS--LGEARVDEIYAQIPQE---LEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp HHHHHHHH--HSCEEHHHHHHTCCGG---GCCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHh--CCCCCHHHHHHHHhcc---cCCCHhhHHHHHHHHHHCCCEE
Confidence 45555554 5678999999888764 2334445556888889999754
No 156
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin acylase, antibiotics, penicillin acylase, N- terminal hydrolase; 2.00A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A 2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Probab=23.21 E-value=14 Score=28.69 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.1
Q ss_pred hHhhhccCCCceeeec
Q 031854 52 VILRDSHGIAQVKSVT 67 (152)
Q Consensus 52 ~iLRD~~GIp~VK~vt 67 (152)
.|.||.||||-|..-+
T Consensus 19 ~I~RD~~GVPHI~A~~ 34 (169)
T 1fm2_A 19 EILWDGYGVPHIYGVD 34 (169)
T ss_dssp EEEEETTSCEEEECSS
T ss_pred EEEECCCCceEEEeCC
Confidence 5789999999987543
No 157
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=23.08 E-value=63 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCC
Q 031854 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA 61 (152)
Q Consensus 24 ~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp 61 (152)
..+.-|+|||++.|.++.+.|.. . =|.||=..||||
T Consensus 296 ~~l~~t~e~I~~~v~~~l~~~~~-~-~g~Il~~gcgi~ 331 (359)
T 2inf_A 296 SILLAPWEVIEQKTKEILDQGME-S-DGFIFNLGHGVF 331 (359)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHTT-S-SCEEBCBSSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-C-CCeEEeCCCCCC
Confidence 34555899999999998876421 1 177888888887
No 158
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=22.94 E-value=52 Score=25.40 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=24.4
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 43 kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
-|+|.|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 10 agVS~~TVSrvLn~~---~~vs~~tr~rV~~~a~~lgY~p 46 (340)
T 1qpz_A 10 ANVSTTTVSHVINKT---RFVAEETRNAVWAAIKELHYSP 46 (340)
T ss_dssp HTSCHHHHHHHHHTC---SCCCHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHcCc---CCCCHHHHHHHHHHHHHhCCCC
Confidence 377777777777744 4466667777777777666544
No 159
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.81 E-value=1.1e+02 Score=20.11 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=21.6
Q ss_pred CCCCcCCCCCCCCCCCccCChHHHHHHH
Q 031854 10 GISASALPYKRTPPSWLKISSQDVEDNI 37 (152)
Q Consensus 10 G~S~S~~P~~~~~P~Wl~~~~eEVe~~I 37 (152)
|.|+|.++.+..+|++..-+..+--..+
T Consensus 1 ~ssgs~~~~~~~~~~~~~~~~~~~~~~~ 28 (96)
T 2ctd_A 1 GSSGSSGRIRKEPPVYAAGSLEEQWYLE 28 (96)
T ss_dssp CCCCCCCCCCCCCCSSCTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHH
Confidence 6789999999999988776666654444
No 160
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=22.78 E-value=57 Score=28.33 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 031854 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (152)
Q Consensus 29 ~~eEVe~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~ 77 (152)
+..+...++..|.+.|+|.++|- .|.|.+++|+|++
T Consensus 371 dvs~~p~l~~~L~~rG~se~di~-------------ki~ggN~lRVl~~ 406 (417)
T 3b40_A 371 DVSEIRNVTAELITRGYSDADIA-------------KLWGGNFLRAWGE 406 (417)
T ss_dssp SGGGHHHHHHHHHHHTCCHHHHH-------------HHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCHHHHH-------------HHHHHHHHHHHHH
Confidence 45566666666666666666553 3555666666665
No 161
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=22.63 E-value=29 Score=22.07 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=27.4
Q ss_pred hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031854 42 KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (152)
Q Consensus 42 KkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlap 82 (152)
..+.|.++|...|... +.+..-|=..+++.|+++|+--
T Consensus 21 ~~~~t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 21 HSSINTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp SSSEEHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeE
Confidence 4568889999988764 3345555566888889998753
No 162
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=22.51 E-value=85 Score=22.84 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH-cCCCCCChhhHHHHHH-HHHHHHH-HHhHcCCcccc
Q 031854 35 DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA-HGLAPEIPEDLYHLIK-KAVAIRK-HLERNRKDKDS 111 (152)
Q Consensus 35 ~~IvklaKkG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~-nGlapeIPEDL~~LIk-KAv~iRK-HLe~n~KD~~s 111 (152)
+.+.+|+. .||..|.. +|||.+..+ .-+.++-+. .|..--||-....... +-..|+. +--.|-++...
T Consensus 30 e~L~el~~------~ig~~L~~-~Gi~~~~~i--e~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~f~G~n~~eLAr 100 (129)
T 1rr7_A 30 ALLAELND------LLRGELSR-LGVDPAHSL--EIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDFNGRNVSELTT 100 (129)
T ss_dssp HHHHHHHH------HHHHHHHH-TSSCTTSHH--HHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHHCCSSCHHHHHH
T ss_pred HHHHHHHH------HHHHHHHH-cCCCHHHHH--HHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55556654 56777876 799996666 333444444 4778888876653321 2222322 21223333333
Q ss_pred chhhhhhHHHHHHHHHhhhh
Q 031854 112 KFRLILVESRIHDWLATTRR 131 (152)
Q Consensus 112 K~~L~LiESkI~RL~kYYk~ 131 (152)
| .-|.|..|+|+++=-++
T Consensus 101 k--YgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 101 R--YGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp H--HTCCHHHHHHHHHHHHH
T ss_pred H--HCCCHHHHHHHHHHHHH
Confidence 3 35688999999875544
No 163
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.27 E-value=1.3e+02 Score=18.58 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=22.4
Q ss_pred HHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC
Q 031854 39 KFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG 79 (152)
Q Consensus 39 klaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nG 79 (152)
+||+ -|++++.|..+.+... +| +.. +.+|.+.-|
T Consensus 16 ~lA~~lgvs~~~is~~e~g~~-~p-~~~-----l~~ia~~l~ 50 (79)
T 3bd1_A 16 ALAASLGVRQSAISNWRARGR-VP-AER-----CIDIERVTN 50 (79)
T ss_dssp HHHHHHTCCHHHHHHHHHHTC-CC-GGG-----HHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHCCC-CC-HHH-----HHHHHHHHC
Confidence 4443 4888888888888765 67 433 555555555
No 164
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.22 E-value=82 Score=19.83 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=29.8
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031854 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (152)
Q Consensus 43 kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nGlapeI 84 (152)
..+|..+|-..|+++. |.|-..|=-..++.|++.|+.-.+
T Consensus 32 ~~~s~~el~~~l~~~~--~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMG--EEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCeEEE
Confidence 3578888888888765 566667777788888888876543
No 165
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=22.11 E-value=49 Score=25.39 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.8
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-+-.+|..|+
T Consensus 13 ~ltd~qI~kQI~YlL~qGw~~~ 34 (138)
T 4f0h_B 13 DLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEE
Confidence 4699999999999999999875
No 166
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=22.05 E-value=11 Score=29.14 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=12.8
Q ss_pred hHhhhccCCCceeeec
Q 031854 52 VILRDSHGIAQVKSVT 67 (152)
Q Consensus 52 ~iLRD~~GIp~VK~vt 67 (152)
.|.||.||||-|..-+
T Consensus 11 ~I~rD~~GVPHI~A~~ 26 (170)
T 3l91_A 11 DIRWTAYGVPHIRAKD 26 (170)
T ss_dssp EEEEEGGGEEEEECSS
T ss_pred EEEECCCCCceEEeCC
Confidence 4689999999987544
No 167
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=22.00 E-value=48 Score=21.03 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHh-cCCCcchh
Q 031854 30 SQDVEDNICKFAK-KGLTPSQI 50 (152)
Q Consensus 30 ~eEVe~~IvklaK-kG~tpSqI 50 (152)
++|+.+.+..||+ .|-|+|.|
T Consensus 11 ~~el~~rL~~lA~~~~rs~s~l 32 (58)
T 2ay0_A 11 DDATRERIKSAATRIDRTPHWL 32 (58)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHH
Confidence 5788999999998 89999987
No 168
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=21.95 E-value=51 Score=22.98 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhcCCCc
Q 031854 30 SQDVEDNICKFAKKGLTP 47 (152)
Q Consensus 30 ~eEVe~~IvklaKkG~tp 47 (152)
++.||+.++.||..|--+
T Consensus 36 A~~VE~~Li~lAq~Gqi~ 53 (80)
T 1eij_A 36 VEQIELQLIQLAQMGRVR 53 (80)
T ss_dssp HHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 578999999999999433
No 169
>1cp9_A Penicillin amidohydrolase; antibiotic resistance, NTN-hydrolase fold, N-terminal pyroglutamate, penicillin binding protein; 2.50A {Providencia rettgeri} SCOP: d.153.1.2
Probab=21.89 E-value=16 Score=29.04 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.7
Q ss_pred HhhhccCCCceee
Q 031854 53 ILRDSHGIAQVKS 65 (152)
Q Consensus 53 iLRD~~GIp~VK~ 65 (152)
|.||.||||-|..
T Consensus 7 I~RD~~GVPHI~A 19 (205)
T 1cp9_A 7 IERDNYGVPHIYA 19 (205)
T ss_dssp EEECTTCCEEEEC
T ss_pred EEECCCCCeeEEe
Confidence 5677777776654
No 170
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.88 E-value=1.5e+02 Score=20.42 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCCCcCCCCCC---CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhcc
Q 031854 10 GISASALPYKR---TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58 (152)
Q Consensus 10 G~S~S~~P~~~---~~P~Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD~~ 58 (152)
|.|+|..+.+. ...+|++ ++.|.+|..-|++..+.=..|+-..
T Consensus 1 ~~~~~~~~~k~~~~~~~~~~n------~~~I~qL~~MGF~~~~a~~AL~~~n 46 (85)
T 2dkl_A 1 GSSGSSGGMKTSGKQDEAWIM------SRLIKQLTDMGFPREPAEEALKSNN 46 (85)
T ss_dssp CCCCCCCCCCCCCCCCHHHHH------HHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCcCccCCCCCCCccccC------HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 45666655543 2334431 6667777777999988777775443
No 171
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=21.66 E-value=44 Score=25.60 Aligned_cols=22 Identities=5% Similarity=0.243 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031854 27 KISSQDVEDNICKFAKKGLTPS 48 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpS 48 (152)
.+|.|||.++|.-+-.+|+.|+
T Consensus 13 ~ltdeqI~kQI~YlL~qGw~p~ 34 (139)
T 1bxn_I 13 ELTDEQITKQLEYCLNQGWAVG 34 (139)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeEE
Confidence 4699999999999999999765
No 172
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.65 E-value=99 Score=18.56 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHh-cCCCcchhhhHh
Q 031854 31 QDVEDNICKFAK-KGLTPSQIGVIL 54 (152)
Q Consensus 31 eEVe~~IvklaK-kG~tpSqIG~iL 54 (152)
+++-+.|.++.+ +|+|..+++..+
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~ 30 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLA 30 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444444433 566665555443
No 173
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=21.57 E-value=58 Score=28.61 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 28 ~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
+|.||+++.+-.+..--+|+.|||-.|
T Consensus 16 Lt~eEa~~~~~~i~~G~~~d~QiaAfL 42 (423)
T 2dsj_A 16 HRREDLEAFLLGYLRDEVPDYQVSAWL 42 (423)
T ss_dssp CCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466666666666666666666666443
No 174
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.56 E-value=1.3e+02 Score=21.74 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.2
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhh
Q 031854 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILR 55 (152)
Q Consensus 17 P~~~~~P~Wl~~~~eEVe--~~IvklaKkG~tpSqIG~iLR 55 (152)
|..+..--.=.|+.++|+ ..|..|...|+|-.+|..+|.
T Consensus 30 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 30 PIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp CCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcCCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 434444555667899888 578899999999999998875
No 175
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=21.43 E-value=60 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhhc
Q 031854 33 VEDNICKFAKKGLTPSQIGVILRDS 57 (152)
Q Consensus 33 Ve~~IvklaKkG~tpSqIG~iLRD~ 57 (152)
+++.|.=|-.||+|..+|-..|+..
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5678888999999999999988863
No 176
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=21.42 E-value=51 Score=21.47 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=17.8
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGV 52 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~ 52 (152)
-++++++|.+.+..|.++| +|+.|-.
T Consensus 49 ~~It~~~i~~~~~~l~~~~-s~~t~~~ 74 (121)
T 2kkv_A 49 RQLKTSHLLAPIKEVDTSG-KHDVAQR 74 (121)
T ss_dssp TCCCSGGGHHHHHHHHHTT-THHHHHH
T ss_pred HHcCHHHHHHHHHHHHHcC-CHHHHHH
Confidence 4567788888888877766 6655543
No 177
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=21.38 E-value=60 Score=20.43 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=21.2
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
-++++++|.+.+..|+ +|++|+.|...+
T Consensus 45 ~~it~~~i~~~~~~l~-~~~s~~t~~~~~ 72 (110)
T 2khq_A 45 KDIKRTEYQKFLNEYG-LTHSYETIRKLN 72 (110)
T ss_dssp GGCCHHHHHHHHHHHH-HHSCHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 4678899999988886 477887766554
No 178
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=21.21 E-value=49 Score=26.73 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=38.7
Q ss_pred HHHHHHHHHHh-cCC-CcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHHH
Q 031854 32 DVEDNICKFAK-KGL-TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKAV 96 (152)
Q Consensus 32 EVe~~IvklaK-kG~-tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nG--lapeIPEDL~~LIkKAv 96 (152)
++.+.+.++|+ .|. ||+|+-..--=+++-. +-.|.|.+=.+-|++|= +.-+++++-+..|..+.
T Consensus 243 ~~~~~l~~ia~~~g~~s~aqvaL~w~l~~~~v-~~vI~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 310 (333)
T 1pz1_A 243 SAVNQLDKLAKTRYGKSVIHLAVRWILDQPGA-DIALWGARKPGQLEALSEITGWTLNSEDQKDINTIL 310 (333)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHTSTTC-CEEEEECCSGGGGTTCTTSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34456667765 699 9999987655555411 23455544444455543 23468888887777664
No 179
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=21.03 E-value=62 Score=25.20 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=29.5
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhh-ccCCCceeeecchhHHHHHHHcCCCCCCh
Q 031854 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRD-SHGIAQVKSVTGSKILRILKAHGLAPEIP 85 (152)
Q Consensus 25 Wl~~~~eEVe~~IvklaKkG~tpSqIG~iLRD-~~GIp~VK~vtGkkI~~ILk~nGlapeIP 85 (152)
|+.-+++|. +.+.+. -|+++..+-..+.. .|+...+..-.=..+.+.|.+.|+ ++-|
T Consensus 267 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 324 (341)
T 3un6_A 267 KMNDRKQSV-DIMTHH--FKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHL-FNPP 324 (341)
T ss_dssp HTTSHHHHH-HHHHHH--SSSCHHHHHHHHHTEECSCCCCCHHHHHHHHHHHHHTTS-CCCC
T ss_pred HHHhCHHHH-HHHHHH--hCcCHHHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHcCC-CCCC
Confidence 444555555 444333 36777666554432 344322211112456677888888 6554
No 180
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.99 E-value=1.6e+02 Score=18.18 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=5.8
Q ss_pred CCCcchhhhHhhh
Q 031854 44 GLTPSQIGVILRD 56 (152)
Q Consensus 44 G~tpSqIG~iLRD 56 (152)
|++++.|..+.+.
T Consensus 36 gvs~~~is~~e~g 48 (80)
T 3kz3_A 36 GMGQSAVAALFNG 48 (80)
T ss_dssp TSCHHHHHHHHTT
T ss_pred CcCHHHHHHHHcC
Confidence 4444444444443
No 181
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=20.83 E-value=79 Score=20.85 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=17.5
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGV 52 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~ 52 (152)
++++.+|.+.+.++.++| +|+.+..
T Consensus 54 ~It~~~i~~~l~~l~~~~-~~~t~~~ 78 (118)
T 2kj9_A 54 ELDTGDLLVPIKKIEKLG-YLEIAMR 78 (118)
T ss_dssp GCCHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred HCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 457888888888887766 5555443
No 182
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=20.78 E-value=89 Score=25.06 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC--CCCCChhhHHHHHHHH
Q 031854 36 NICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG--LAPEIPEDLYHLIKKA 95 (152)
Q Consensus 36 ~IvklaK-kG~tpSqIG~iLRD~~GIp~VK~vtGkkI~~ILk~nG--lapeIPEDL~~LIkKA 95 (152)
.+.++|+ .|.||+|+-..---++|+ -.|.|.+=.+-|++|= +..+++++-+..|..+
T Consensus 240 ~l~~ia~~~g~s~aqvaL~w~l~~~~---~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~ 299 (323)
T 1afs_A 240 VLCAIAKKYKQTPALVALRYQLQRGV---VPLIRSFNAKRIKELTQVFEFQLASEDMKALDGL 299 (323)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTC---EEEECCSCHHHHHHHTTTTSCCCCHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC---EEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 3445554 699999998876666763 4566655445555553 2356888777666543
No 183
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=20.41 E-value=69 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=21.5
Q ss_pred CcchhhhHhhhccCCCcee------eecchhHHHHHH
Q 031854 46 TPSQIGVILRDSHGIAQVK------SVTGSKILRILK 76 (152)
Q Consensus 46 tpSqIG~iLRD~~GIp~VK------~vtGkkI~~ILk 76 (152)
||.|+|.+|.| .|+|..+ .-|+..+++-|.
T Consensus 332 S~~ql~~~L~~-lgl~~~~~t~~G~~st~~~vL~~l~ 367 (698)
T 1x9m_A 332 SRDHIQKKLQE-AGWVPTKYTDKGAPVVDDEVLEGVR 367 (698)
T ss_dssp CHHHHHHHHHH-TTCCCCCBCTTSCBCCSHHHHHHCC
T ss_pred CHHHHHHHHHH-CCCCCCCcCCCCCcCCCHHHHHHHH
Confidence 78899999999 9998554 245555555444
No 184
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.37 E-value=72 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.5
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 031854 26 LKISSQDVEDNICKFAKKGL 45 (152)
Q Consensus 26 l~~~~eEVe~~IvklaKkG~ 45 (152)
|.++..+|..++..|.++|+
T Consensus 39 Lg~sK~~vNr~LY~L~kkG~ 58 (75)
T 1sfu_A 39 LKINKKKINQQLYKLQKEDT 58 (75)
T ss_dssp TTCCHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHCCC
Confidence 56788999999999999996
No 185
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=20.37 E-value=65 Score=28.30 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031854 27 KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (152)
Q Consensus 27 ~~~~eEVe~~IvklaKkG~tpSqIG~iL 54 (152)
.+|.||+++.+-.+..--+|+.|||-.|
T Consensus 16 ~Lt~eEa~~~~~~i~~G~~sd~QiaAfL 43 (440)
T 2tpt_A 16 ALSDEEIRFFINGIRDNTISEGQIAALA 43 (440)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3577777777777777777777777554
No 186
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=20.27 E-value=85 Score=21.78 Aligned_cols=15 Identities=13% Similarity=0.446 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHhc
Q 031854 29 SSQDVEDNICKFAKK 43 (152)
Q Consensus 29 ~~eEVe~~IvklaKk 43 (152)
.++|+|+.|..|.++
T Consensus 11 ~~~~ie~~IL~l~~~ 25 (81)
T 2dk8_A 11 DPVEIENRIIELCHQ 25 (81)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 489999999999874
Done!