RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031854
         (152 letters)



>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase
           (aspartylglucosaminidase, AGA) {Escherichia coli [TaxId:
           562]}
          Length = 291

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
              M   G    A A   +R  P                  ++ L    +G +  D  G 
Sbjct: 118 HVMMIGEGAENFAFARGMERVSPEIFST---------SLRYEQLLAARTVGAVALDLDGN 168

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLY 89
               + TG    ++    G +P +    Y
Sbjct: 169 LAAATSTGGMTNKLPGRVGDSPLVGAGCY 197


>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 226

 Score = 24.2 bits (51), Expect = 7.4
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 58 HGIAQVKSVTGSKILRILKA----HGLAP 82
          H     +  TG++ L ++KA    HG   
Sbjct: 8  HNYRLAREATGARALAVIKADAYGHGAVR 36


>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus
           oryzae, Taka-amylase [TaxId: 5062]}
          Length = 381

 Score = 24.2 bits (51), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 87  DLYHLIKKAVAIRKH 101
           +LY LI  A AIR +
Sbjct: 357 ELYKLIASANAIRNY 371


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,253
Number of extensions: 25078
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 11
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)