BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031855
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H6Q|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
pdb|1H7Y|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
Length = 168
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 6 IERILFFFKLHLQWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPA 65
++ I++ + V QG DVDIGANPS V ++V +FRL +
Sbjct: 23 VDDIVYEADCQMVTVKQGG-DVDIGANPSAEDAEENAEEGTET--VNNLVYSFRLSPT-S 78
Query: 66 FDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHD 122
FDKK +++Y+K ++K + +L E ER +F+KN G K +L+ D F++GESM
Sbjct: 79 FDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDP 138
Query: 123 DGCLVFAYYKEGATDPTFLYIADAL 147
D +V Y+E P ++ D L
Sbjct: 139 DAMVVLMNYREDGITPYMIFFKDGL 163
>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
Protein (Tctp) Of Plasmodium Falciparum
Length = 183
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 51 VVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLS 107
V+DIVD+F+L AF KK++ Y+K +++ + L E +R EIFK + K +L+
Sbjct: 72 VIDIVDSFQLT-STAFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHILT 130
Query: 108 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 151
D +F++GES+ + ++++YYK P F+YI+D L E K
Sbjct: 131 NFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEK 174
>pdb|1TXJ|A Chain A, Crystal Structure Of Translationally Controlled Tumour-
Associated Protein (Tctp) From Plasmodium Knowlesi
Length = 171
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 50 KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLL 106
+V+DIVD+F+L + KK++ Y+K +++ + L E +R ++FK + K +L
Sbjct: 67 QVIDIVDSFQLT-STSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHIL 125
Query: 107 SKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 151
+ D +F++GES+ D L ++YYK P F+YI+D L E K
Sbjct: 126 TNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLYEEK 170
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 52 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSK 108
VDIV LQE +F K+ + Y+K ++K + KL E+R E K + GA K +L+
Sbjct: 72 VDIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 130
Query: 109 LSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 152
+ QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 131 FKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 174
>pdb|3EBM|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
Length = 180
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 52 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSK 108
VDIV LQE +F K+ + Y+K ++K + KL E+R E K + GA K +L+
Sbjct: 70 VDIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 128
Query: 109 LSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 152
+ QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 129 FKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 52 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSK 108
VDIV LQE +F K+ + Y+K ++K + KL E+R E K + GA K +L+
Sbjct: 70 VDIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 128
Query: 109 LSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 152
+ QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 129 FKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|2KWB|A Chain A, Minimal Constraint Solution Nmr Structure Of
Translationally Controlled Tumor Protein (Tctp) From
C.Elegans, Northeast S Genomics Consortium Target Wr73
pdb|2LOY|A Chain A, Refined Miminal Constraint Solution Nmr Structure Of
Translationally- Controlled Tumor Protein (Tctp) From
Caenorhabditis Elegans, Northeast Structural Genomics
Consortium Target Wr73
Length = 189
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 30 GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSE 88
G+NPS + +DIV +L E + D F Y+K+F+K + + +
Sbjct: 46 GSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEK 105
Query: 89 ERQE-----IFKKNIEGATKFLLSK--LSDLQFFVGESMHD---DGCLVFAYYKE--GAT 136
++ FKK I+G LL+K +L FF+GE + +G + Y++ G
Sbjct: 106 NNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTE 165
Query: 137 DPTFLYIADALKEVKC 152
PT + + +A+ E KC
Sbjct: 166 VPTLMLVKEAIIEEKC 181
>pdb|2GH9|A Chain A, Thermus Thermophilus Maltotriose Binding Protein Bound
With Maltotriose
Length = 386
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 59 RLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGE 118
RL PAF + + Y K+++K P+ EE + +K GAT L + D F G
Sbjct: 104 RLMGLPAFAESVALIYNKKYVK-EPPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGF 162
Query: 119 SMHDDGCLVFAYYKEGATDPTFLYIADALKE 149
VFA +G DPT L I + E
Sbjct: 163 FKAFGAENVFAKDAKGNLDPTKLLIGGEVGE 193
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 51 VVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIE 99
+ + VD + +Q P FD K+F K +K + ++E +E +K E
Sbjct: 480 LTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFE 528
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,789,371
Number of Sequences: 62578
Number of extensions: 120845
Number of successful extensions: 384
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 11
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)