Query 031855
Match_columns 152
No_of_seqs 108 out of 348
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6q_A TCTP, P23FYP, translati 100.0 1E-69 3.4E-74 427.6 12.3 148 2-152 13-168 (168)
2 1yz1_A Translationally control 100.0 2.8E-69 9.6E-74 427.2 6.6 149 2-152 15-174 (174)
3 1txj_A Translationally control 100.0 2.4E-68 8.2E-73 420.7 7.5 146 2-152 13-171 (171)
4 2kwb_A TCTP, translationally-c 100.0 5.6E-66 1.9E-70 412.5 5.5 150 2-152 13-181 (189)
5 4fqn_A Malcavernin; helical do 68.4 5.9 0.0002 28.2 3.9 30 72-101 15-44 (98)
6 2l7y_A Putative endo-beta-N-ac 56.1 8.8 0.0003 27.1 3.0 26 113-138 18-43 (98)
7 1v0d_A DNA fragmentation facto 43.3 34 0.0012 29.0 5.1 24 62-86 149-178 (329)
8 3evy_A Putative type I restric 32.4 45 0.0015 26.5 4.0 45 70-114 12-71 (239)
9 3dml_A Putative uncharacterize 29.8 19 0.00066 25.5 1.3 13 136-148 76-88 (116)
10 3evi_A Phosducin-like protein 29.7 25 0.00087 24.3 1.9 44 100-149 43-86 (118)
11 4euy_A Uncharacterized protein 24.5 79 0.0027 20.0 3.5 14 135-148 70-83 (105)
12 2cr7_A Paired amphipathic heli 24.5 47 0.0016 22.1 2.4 26 76-101 14-41 (80)
13 2xrh_A Protein HP0721; unknown 24.1 67 0.0023 22.8 3.2 48 57-104 39-86 (100)
14 1g1e_B SIN3A; four-helix bundl 24.1 59 0.002 22.0 2.9 31 73-103 11-43 (89)
15 2czy_A Paired amphipathic heli 23.8 49 0.0017 21.7 2.4 28 74-101 6-35 (77)
16 1e91_A Paired amphipathic heli 21.9 65 0.0022 21.6 2.7 30 74-103 9-40 (85)
17 1cl8_A Protein (endonuclease); 21.5 1.3E+02 0.0043 24.7 4.8 48 94-141 61-108 (276)
18 1pq4_A Periplasmic binding pro 21.5 61 0.0021 25.9 3.0 45 74-118 140-197 (291)
19 2h1e_A Chromo domain protein 1 20.2 26 0.00089 26.7 0.5 13 50-62 13-25 (177)
No 1
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=100.00 E-value=1e-69 Score=427.61 Aligned_cols=148 Identities=34% Similarity=0.603 Sum_probs=143.9
Q ss_pred ceeeeeeee----eEEEEEEEEEEe-ccccccccCCCCCCCCCCCCCcccceeEeeeeeeCcccccCCCCCHHHHHHHHH
Q 031855 2 IFINIERIL----FFFKLHLQWVVQ-GAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMK 76 (152)
Q Consensus 2 ~f~~~~~i~----~~yeV~~k~vt~-~~~~~diGaN~sae~~~~de~~d~~~~~viDiV~~~rL~e~t~f~Kk~y~~yiK 76 (152)
||||+|++. ++|||+||+|++ ++++++||||||||++ +|++|+++++|||||+|||||| |+||||+|++|||
T Consensus 13 m~SDsy~~k~vd~~~yEV~gk~v~~~~~~didiGaN~SaE~~--~eg~d~~~~~vvdiV~~~rLqe-t~fdKk~y~~yiK 89 (168)
T 1h6q_A 13 LVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDIGANPSAEDA--EENAEEGTETVNNLVYSFRLSP-TSFDKKSYMSYIK 89 (168)
T ss_dssp CEETTTCEEECSSSEEEEECCEEEEECCCCSTTSCCCCCCSC--SCSSCCCEEEEEHHHHHTTCEE-CCCCHHHHHHHHH
T ss_pred EeecCcccEeeCCEEEEEeeEEEEEccCCccccccCcccccc--ccccCCceEEeeeeeEeccccc-CCcCHHHHHHHHH
Confidence 899999775 899999999999 9999999999999975 5899999999999999999999 9999999999999
Q ss_pred HHHHHhccCC---ChHHHHHHHHhhHHHHHHHHhcCCCcceeecCCcCCCceEEEEeccCCCcceEEEEEccccceecC
Q 031855 77 RFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 152 (152)
Q Consensus 77 ~Y~K~vk~kL---~~e~v~~Fk~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL~eeK~ 152 (152)
+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+||||+||||||+||||
T Consensus 90 ~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GEsmd~dgmvvl~~Yredg~tP~~~f~K~GL~eeK~ 168 (168)
T 1h6q_A 90 GYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGLVSEKF 168 (168)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTTTTCCEECTTCCTTSCCEEEEECSSSSCEEEEEESTTCEEECC
T ss_pred HHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCCCeEEEEEcccceeecC
Confidence 9999999999 689999999999999999999999999999999999999999999999999999999999999998
No 2
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=100.00 E-value=2.8e-69 Score=427.24 Aligned_cols=149 Identities=32% Similarity=0.597 Sum_probs=121.3
Q ss_pred ceeeeeeee-----eEEEEEEEEEEecccccc---ccCCCCCCCCCCCCCcccceeEeeeeeeCcccccCCCCCHHHHHH
Q 031855 2 IFINIERIL-----FFFKLHLQWVVQGAVDVD---IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVT 73 (152)
Q Consensus 2 ~f~~~~~i~-----~~yeV~~k~vt~~~~~~d---iGaN~sae~~~~de~~d~~~~~viDiV~~~rL~e~t~f~Kk~y~~ 73 (152)
||||+|++. ++|||+||+|+|+++++| ||||||||+++ +|++++++++|||||+|||||| |+||||+|++
T Consensus 15 m~SDsy~~~~~~dg~~yEV~gk~v~~~~g~idd~liGaN~SaE~~~-~eg~d~~~~~~vdiV~~~rLqe-t~fdKk~y~~ 92 (174)
T 1yz1_A 15 MFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPE-GEGTESTVITGVDIVMNHHLQE-TSFTKEAYKK 92 (174)
T ss_dssp EEETTSEEEEEGGGTEEEEECCBCCC-----------------------------CCCBHHHHHTTCEE-ECCCHHHHHH
T ss_pred EeecCcccEEccCCEEEEEeeEEEEecCCCccccccccCccccccc-ccccCcceEEcceeEeeccccc-cCcCHHHHHH
Confidence 799999873 799999999999999887 99999999864 6899999999999999999999 9999999999
Q ss_pred HHHHHHHHhccCC---ChHHHHHHHHhhHHHHHHHHhcCCCcceeecCCcCCCceEEEEeccCCCcceEEEEEcccccee
Q 031855 74 YMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEV 150 (152)
Q Consensus 74 yiK~Y~K~vk~kL---~~e~v~~Fk~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL~ee 150 (152)
|||+|||+|++|| +||||++|+++||++||+||+||+||||||||||||||||||++|||||+||||+||||||+||
T Consensus 93 yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~tP~~~f~K~GL~ee 172 (174)
T 1yz1_A 93 YIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEME 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCEEEEEECTTSSCEEEEEEGGGEEEE
T ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCccEEEEEccCCCcCeEEEEEcccceee
Confidence 9999999999999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 031855 151 KC 152 (152)
Q Consensus 151 K~ 152 (152)
||
T Consensus 173 K~ 174 (174)
T 1yz1_A 173 KC 174 (174)
T ss_dssp EC
T ss_pred cC
Confidence 98
No 3
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=100.00 E-value=2.4e-68 Score=420.74 Aligned_cols=146 Identities=29% Similarity=0.547 Sum_probs=127.6
Q ss_pred ceeeee----eee------eEEEEEEEEEEeccccccccCCCCCCCCCCCCCcccceeEeeeeeeCcccccCCCCCHHHH
Q 031855 2 IFINIE----RIL------FFFKLHLQWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQF 71 (152)
Q Consensus 2 ~f~~~~----~i~------~~yeV~~k~vt~~~~~~diGaN~sae~~~~de~~d~~~~~viDiV~~~rL~e~t~f~Kk~y 71 (152)
||||+| ++. ++|||+||+|++++++++||||||||++ +|++| +++|||||+|||||| |+||||+|
T Consensus 13 m~SDsy~~~~~~k~~e~~~~~yEV~gk~v~~~~~~idiGaN~saE~~--~e~~d--~~~vvdIV~~~rL~e-t~f~Kk~y 87 (171)
T 1txj_A 13 VCSDSYNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVD--GMGAD--VEQVIDIVDSFQLTS-TSLSKKEY 87 (171)
T ss_dssp EEETTSCCBCGGGCGGGTTTEEEEECCEEESCC----------------CCCCS--SCEEEHHHHHHTCEE-ECCCHHHH
T ss_pred EEeccccccCCccccccCCEEEEEEeEEEEECCCcccccCCcccccc--ccCcc--eeecceEEEecceee-cCCCHHHH
Confidence 799999 655 9999999999999999999999999975 47777 999999999999999 99999999
Q ss_pred HHHHHHHHHHhccCC---ChHHHHHHHHhhHHHHHHHHhcCCCcceeecCCcCCCceEEEEeccCCCcceEEEEEccccc
Q 031855 72 VTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALK 148 (152)
Q Consensus 72 ~~yiK~Y~K~vk~kL---~~e~v~~Fk~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL~ 148 (152)
++|||+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+||||+||||||+
T Consensus 88 ~~yiK~YmK~i~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~tP~~~f~K~GL~ 167 (171)
T 1txj_A 88 SVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCCEEEECCTTCSSCEEEEEGGGEE
T ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCCCeEEEEEcccce
Confidence 999999999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 031855 149 EVKC 152 (152)
Q Consensus 149 eeK~ 152 (152)
||||
T Consensus 168 eeK~ 171 (171)
T 1txj_A 168 EEKF 171 (171)
T ss_dssp EEEC
T ss_pred eecC
Confidence 9998
No 4
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural genomics, northeast structural genomics consortiu PSI-2; NMR {Caenorhabditis elegans} PDB: 2loy_A
Probab=100.00 E-value=5.6e-66 Score=412.53 Aligned_cols=150 Identities=29% Similarity=0.541 Sum_probs=143.8
Q ss_pred ceeeeeeee----eEEEEEEEEEEecccccc-ccCCCCCCCCCCCCCcccceeEeeeeeeCcccccCCCC--CHHHHHHH
Q 031855 2 IFINIERIL----FFFKLHLQWVVQGAVDVD-IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAF--DKKQFVTY 74 (152)
Q Consensus 2 ~f~~~~~i~----~~yeV~~k~vt~~~~~~d-iGaN~sae~~~~de~~d~~~~~viDiV~~~rL~e~t~f--~Kk~y~~y 74 (152)
||||+|++. ++|||+||+|+|++++++ ||||||||+++++|++|+++++|||||+|||||| |+| |||+|++|
T Consensus 13 mfSDsy~~k~vd~~~yEV~gK~v~~~~gdidl~GaN~SaE~~~~~eg~d~~~~~vvDIV~n~rLqe-t~f~~dKk~y~~y 91 (189)
T 2kwb_A 13 LSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVE-MNCYEDASMFKAY 91 (189)
T ss_dssp CEEECCCCEEETTTEEEEECCEECCBTTBCCCCCCSCCCSSCCSSCCCGGGCSSEEHHHHTTTEEE-ECHHHHHHHHHHH
T ss_pred EeecCccCEeeCCEEEEEeeEEEEECCccccccccCccccccccccccCCccEEcceeEEecceee-cccccCHHHHHHH
Confidence 899999775 899999999999999998 8999999985457999999999999999999999 999 99999999
Q ss_pred HHHHHHHhccCC---ChHH--HHHHHHhhHHHHHHHHh--cCCCcceeecCCcCC---CceEEEEeccC-CC-cceEEEE
Q 031855 75 MKRFIKLLTPKL---SEER--QEIFKKNIEGATKFLLS--KLSDLQFFVGESMHD---DGCLVFAYYKE-GA-TDPTFLY 142 (152)
Q Consensus 75 iK~Y~K~vk~kL---~~e~--v~~Fk~~a~~~vK~il~--nfkd~qFf~Gesmd~---dgmv~l~~y~e-dg-~tP~~~f 142 (152)
||+|||+|+++| +|+| |++|+++||++||+||+ ||+|||||||||||| ||||||++||| || +||||+|
T Consensus 92 iK~YmK~v~~kLee~~pe~e~v~~Fk~~a~~~vK~iL~k~~Fkd~qFf~GESmd~~~~dGmv~l~~Yre~dg~~tP~~~f 171 (189)
T 2kwb_A 92 IKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLML 171 (189)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCHHHHTTCEEEEEHHHHHHTSCCCEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhccccccCccEeccCCCCCCCCCceEEEEEEEcCCCCcCeEEEE
Confidence 999999999999 5777 99999999999999999 999999999999999 99999999999 99 9999999
Q ss_pred EccccceecC
Q 031855 143 IADALKEVKC 152 (152)
Q Consensus 143 ~KdGL~eeK~ 152 (152)
|||||+||||
T Consensus 172 fK~GL~eeK~ 181 (189)
T 2kwb_A 172 VKEAIIEEKC 181 (189)
T ss_dssp ETTTEEEECC
T ss_pred EccCceEEEe
Confidence 9999999998
No 5
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=68.42 E-value=5.9 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHhhHHH
Q 031855 72 VTYMKRFIKLLTPKLSEERQEIFKKNIEGA 101 (152)
Q Consensus 72 ~~yiK~Y~K~vk~kL~~e~v~~Fk~~a~~~ 101 (152)
..-+++||..|+.+|+|+++..|-.=+-++
T Consensus 15 ~e~lqdYM~~L~~~L~~~ElqqFA~Llr~Y 44 (98)
T 4fqn_A 15 TELLQDYMLTLRTKLSSQEIQQFAALLHEY 44 (98)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 456999999999999999999987654443
No 6
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=56.14 E-value=8.8 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=21.3
Q ss_pred ceeecCCcCCCceEEEEeccCCCcce
Q 031855 113 QFFVGESMHDDGCLVFAYYKEGATDP 138 (152)
Q Consensus 113 qFf~Gesmd~dgmv~l~~y~edg~tP 138 (152)
+++.||++|..|+.+...|.++...+
T Consensus 18 ~Y~vGE~LDltGl~v~~~YsDgt~~~ 43 (98)
T 2l7y_A 18 DYLVGDSLDLSEGRFAVAYSNDTMEE 43 (98)
T ss_dssp EEETTTCCCCCSCEEEEEETTSCEEE
T ss_pred EEecCCccccCCCEEEEEEcCCCEEE
Confidence 47889999999999999997654443
No 7
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=43.27 E-value=34 Score=29.02 Aligned_cols=24 Identities=17% Similarity=0.578 Sum_probs=21.5
Q ss_pred cCCCC-CHHHHHHH-----HHHHHHHhccCC
Q 031855 62 EQPAF-DKKQFVTY-----MKRFIKLLTPKL 86 (152)
Q Consensus 62 e~t~f-~Kk~y~~y-----iK~Y~K~vk~kL 86 (152)
| +.| ||.+|+.| |.+|++++++.|
T Consensus 149 e-~~f~tKe~yM~~~~q~RIRgY~~k~~~~~ 178 (329)
T 1v0d_A 149 E-SRFRNKSGYLRYSCESRIRGYLREVSAYT 178 (329)
T ss_dssp C-TTCCBHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred c-cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 688 89999886 999999999999
No 8
>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343}
Probab=32.39 E-value=45 Score=26.45 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhccCC----Ch---------HHHHHHHHhhHHHHH--HHHhcCCCcce
Q 031855 70 QFVTYMKRFIKLLTPKL----SE---------ERQEIFKKNIEGATK--FLLSKLSDLQF 114 (152)
Q Consensus 70 ~y~~yiK~Y~K~vk~kL----~~---------e~v~~Fk~~a~~~vK--~il~nfkd~qF 114 (152)
+|..|+++|-+++.+-. .| +..+.|.+..+++.+ .+|..|++|..
T Consensus 12 ~y~e~~~~f~~av~~L~~~~p~p~~i~~l~~e~~k~~Fvk~F~e~~r~~~~L~~Ydef~~ 71 (239)
T 3evy_A 12 PYEKLVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNEFDA 71 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHTTSTTCCG
T ss_pred CHHHHHHHHHHHHHHHHHhCCChhhcccCCCHHHHHHHHHHHHHHHHHHHHHhcccccCh
Confidence 68888888876654322 33 345689999999887 58889999754
No 9
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=29.76 E-value=19 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=11.0
Q ss_pred cceEEEEEccccc
Q 031855 136 TDPTFLYIADALK 148 (152)
Q Consensus 136 ~tP~~~f~KdGL~ 148 (152)
-||+++||++|=+
T Consensus 76 g~PT~i~f~~G~e 88 (116)
T 3dml_A 76 FTPTFVLMAGDVE 88 (116)
T ss_dssp SSSEEEEEETTEE
T ss_pred CCCEEEEEECCEE
Confidence 5899999999943
No 10
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=29.67 E-value=25 Score=24.30 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCcceeecCCcCCCceEEEEeccCCCcceEEEEEccccce
Q 031855 100 GATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKE 149 (152)
Q Consensus 100 ~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL~e 149 (152)
..+..+...+.+..|+. .|.|-. + -.| .-...|++++||+|-.-
T Consensus 43 p~l~~la~~~~~v~f~k---vd~d~~-~-~~~-~v~~~PT~~~fk~G~~v 86 (118)
T 3evi_A 43 QHLSLLARKFPETKFVK---AIVNSC-I-QHY-HDNCLPTIFVYKNGQIE 86 (118)
T ss_dssp HHHHHHHHHCTTSEEEE---EEGGGT-S-TTC-CGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHCCCCEEEE---EEhHHh-H-HHC-CCCCCCEEEEEECCEEE
Confidence 33444555677777774 344432 1 122 23468999999998543
No 11
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=24.52 E-value=79 Score=20.00 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=10.9
Q ss_pred CcceEEEEEccccc
Q 031855 135 ATDPTFLYIADALK 148 (152)
Q Consensus 135 g~tP~~~f~KdGL~ 148 (152)
..+|+++++++|-.
T Consensus 70 ~~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 70 FTGPTVLLFYNGKE 83 (105)
T ss_dssp CCCCEEEEEETTEE
T ss_pred CCCCEEEEEeCCeE
Confidence 35899999998843
No 12
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=24.46 E-value=47 Score=22.06 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=16.7
Q ss_pred HHHHHHhccCC--ChHHHHHHHHhhHHH
Q 031855 76 KRFIKLLTPKL--SEERQEIFKKNIEGA 101 (152)
Q Consensus 76 K~Y~K~vk~kL--~~e~v~~Fk~~a~~~ 101 (152)
..|+++||+++ +|+.-..|..-+..+
T Consensus 14 ~~yl~~VK~rF~~~p~~Y~~FL~im~~f 41 (80)
T 2cr7_A 14 LTYLDQVKIRFGSDPATYNGFLEIMKEF 41 (80)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 35777777777 567666666554443
No 13
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=24.11 E-value=67 Score=22.78 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=34.4
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHhccCCChHHHHHHHHhhHHHHHH
Q 031855 57 TFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKF 104 (152)
Q Consensus 57 ~~rL~e~t~f~Kk~y~~yiK~Y~K~vk~kL~~e~v~~Fk~~a~~~vK~ 104 (152)
.-|++.++.=.++.|..-++.++.+-.++|+.++-..-++.+.+.+++
T Consensus 39 ~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~k 86 (100)
T 2xrh_A 39 KKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKK 86 (100)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 467776433367888888999988888888876666666666666554
No 14
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=24.09 E-value=59 Score=22.01 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHHHHHhccCC--ChHHHHHHHHhhHHHHH
Q 031855 73 TYMKRFIKLLTPKL--SEERQEIFKKNIEGATK 103 (152)
Q Consensus 73 ~yiK~Y~K~vk~kL--~~e~v~~Fk~~a~~~vK 103 (152)
..-..|+++||++. +|+.-..|..-+..+-+
T Consensus 11 ~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 45678999999998 78888888877776654
No 15
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.82 E-value=49 Score=21.75 Aligned_cols=28 Identities=4% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHHHHhccCC--ChHHHHHHHHhhHHH
Q 031855 74 YMKRFIKLLTPKL--SEERQEIFKKNIEGA 101 (152)
Q Consensus 74 yiK~Y~K~vk~kL--~~e~v~~Fk~~a~~~ 101 (152)
.-..|+++||+++ +|+.-..|..-+..+
T Consensus 6 dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~ 35 (77)
T 2czy_A 6 DALTYLDQVKIRFGSDPATYNGFLEIMKEF 35 (77)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3457899999998 677777776655543
No 16
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=21.90 E-value=65 Score=21.58 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=22.5
Q ss_pred HHHHHHHHhccCC--ChHHHHHHHHhhHHHHH
Q 031855 74 YMKRFIKLLTPKL--SEERQEIFKKNIEGATK 103 (152)
Q Consensus 74 yiK~Y~K~vk~kL--~~e~v~~Fk~~a~~~vK 103 (152)
.-..|+++||+++ +|+.-+.|..-+..+-+
T Consensus 9 ~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~ 40 (85)
T 1e91_A 9 NAISYVNKIKTRFLDHPEIYRSFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 4568999999999 68887888776665533
No 17
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog, protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A* 1qps_A 1qrh_A 1qri_A
Probab=21.51 E-value=1.3e+02 Score=24.75 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHhhHHHHHHHHhcCCCcceeecCCcCCCceEEEEeccCCCcceEEE
Q 031855 94 FKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFL 141 (152)
Q Consensus 94 Fk~~a~~~vK~il~nfkd~qFf~Gesmd~dgmv~l~~y~edg~tP~~~ 141 (152)
-++.+...++++-.....=-|..-.|+-|||.|+.+.-.++.-+|.++
T Consensus 61 ~k~eIn~~Lrk~d~~lg~tlFv~nssIkPDGGIievkdd~g~wRviLV 108 (276)
T 1cl8_A 61 KKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLV 108 (276)
T ss_dssp EHHHHHHHHHHHCTTSSCCCSSTTCEECCTTCEEEEECTTSCEEEEEE
T ss_pred hHHHHHHHHHhhCcccccccccccccccCCCcEEEEEcCCCCEEEEEE
Confidence 455666666666554444446667899999999977333333455543
No 18
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.45 E-value=61 Score=25.92 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCC---ChHHHHHHHHhhHHHHHHH----------HhcCCCcceeecC
Q 031855 74 YMKRFIKLLTPKL---SEERQEIFKKNIEGATKFL----------LSKLSDLQFFVGE 118 (152)
Q Consensus 74 yiK~Y~K~vk~kL---~~e~v~~Fk~~a~~~vK~i----------l~nfkd~qFf~Ge 118 (152)
..+.+.+.|.+.| +|+..+.|+++++++.++| |+..++-.|.+..
T Consensus 140 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H 197 (291)
T 1pq4_A 140 LVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFH 197 (291)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESS
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 3456677777777 8998888888888887654 4455555565543
No 19
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=20.17 E-value=26 Score=26.69 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.4
Q ss_pred EeeeeeeCccccc
Q 031855 50 KVVDIVDTFRLQE 62 (152)
Q Consensus 50 ~viDiV~~~rL~e 62 (152)
.+||.|++|||.+
T Consensus 13 ~~id~v~~hr~~~ 25 (177)
T 2h1e_A 13 HGIDIVINHRLKT 25 (177)
T ss_dssp CCEEEEEEEEECT
T ss_pred CcceeeecCCccc
Confidence 4699999999986
Done!