Query 031856
Match_columns 152
No_of_seqs 151 out of 1117
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0419 Ubiquitin-protein liga 100.0 3E-56 6.4E-61 301.9 15.4 152 1-152 1-152 (152)
2 COG5078 Ubiquitin-protein liga 100.0 5.8E-56 1.3E-60 314.4 17.4 150 1-150 1-152 (153)
3 KOG0417 Ubiquitin-protein liga 100.0 4.9E-56 1.1E-60 308.5 15.0 146 5-150 2-147 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 2.7E-51 5.9E-56 293.2 18.4 146 5-150 3-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-50 2.3E-55 288.9 18.4 145 5-149 2-146 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 1.3E-47 2.8E-52 266.9 16.3 149 3-151 4-166 (171)
7 KOG0426 Ubiquitin-protein liga 100.0 3.8E-46 8.2E-51 252.9 14.8 149 1-149 1-163 (165)
8 KOG0424 Ubiquitin-protein liga 100.0 4.8E-46 1E-50 255.6 15.2 150 1-150 1-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 9.5E-46 2.1E-50 261.8 15.2 138 8-145 1-140 (140)
10 KOG0418 Ubiquitin-protein liga 100.0 9.2E-46 2E-50 264.7 14.4 149 1-150 1-153 (200)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 4E-45 8.7E-50 258.9 16.3 139 7-145 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 9E-44 1.9E-48 253.1 17.5 142 7-148 1-144 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 7.3E-44 1.6E-48 244.9 12.2 143 4-147 29-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 1.1E-40 2.5E-45 228.0 14.1 145 5-150 3-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 2.5E-39 5.5E-44 228.2 11.5 146 1-150 1-148 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 4.5E-38 9.7E-43 222.3 12.2 144 3-147 27-172 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1.8E-36 3.8E-41 214.4 8.1 146 4-149 10-155 (223)
18 KOG0427 Ubiquitin conjugating 100.0 1.4E-31 3.1E-36 181.6 11.3 116 1-117 12-128 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 4.2E-30 9E-35 187.8 15.7 113 2-118 3-120 (244)
20 KOG0429 Ubiquitin-conjugating 100.0 5.9E-30 1.3E-34 187.5 14.0 144 7-151 22-171 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 3.6E-23 7.8E-28 154.2 9.8 112 3-117 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 9.4E-18 2E-22 145.6 10.0 113 7-119 854-977 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1E-15 2.2E-20 133.1 10.8 113 4-116 282-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 2.3E-13 4.9E-18 93.3 8.0 109 6-114 7-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.7 8.6E-08 1.9E-12 67.1 7.5 67 49-115 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.7 6.7E-08 1.5E-12 64.7 6.3 74 52-125 12-89 (122)
27 PF05743 UEV: UEV domain; Int 98.4 2E-06 4.4E-11 59.3 7.5 78 33-115 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.2 2.3E-06 4.9E-11 59.7 3.7 95 6-106 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.7 0.00062 1.3E-08 54.1 10.2 82 32-118 51-140 (365)
30 KOG3357 Uncharacterized conser 97.1 0.0012 2.6E-08 45.6 4.6 95 6-106 29-138 (167)
31 PF05773 RWD: RWD domain; Int 96.7 0.009 2E-07 39.7 6.8 69 7-76 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.7 0.039 8.4E-07 38.0 9.9 89 23-114 13-120 (122)
33 PF14457 Prok-E2_A: Prokaryoti 95.7 0.02 4.3E-07 41.5 4.5 62 54-115 56-126 (162)
34 smart00591 RWD domain in RING 95.7 0.084 1.8E-06 34.6 7.3 27 49-75 39-65 (107)
35 KOG4018 Uncharacterized conser 89.6 1.6 3.5E-05 32.9 6.3 37 36-73 33-71 (215)
36 KOG0309 Conserved WD40 repeat- 88.6 2.2 4.8E-05 38.0 7.3 66 8-75 424-491 (1081)
37 PF09765 WD-3: WD-repeat regio 88.1 1.2 2.6E-05 35.3 5.1 85 6-113 101-186 (291)
38 PF06113 BRE: Brain and reprod 85.7 5.3 0.00011 32.2 7.5 67 32-110 52-121 (333)
39 PF14460 Prok-E2_D: Prokaryoti 84.3 1.7 3.7E-05 31.7 3.9 46 73-121 89-137 (175)
40 TIGR03737 PRTRC_B PRTRC system 73.4 6.7 0.00015 30.0 4.3 43 74-120 131-177 (228)
41 PRK05414 urocanate hydratase; 69.1 13 0.00027 31.9 5.3 29 124-152 282-310 (556)
42 TIGR01228 hutU urocanate hydra 68.4 14 0.0003 31.6 5.3 29 124-152 273-301 (545)
43 COG2987 HutU Urocanate hydrata 66.2 14 0.00031 31.2 5.0 29 124-152 282-310 (561)
44 cd00421 intradiol_dioxygenase 62.2 13 0.00027 26.2 3.6 26 49-74 64-90 (146)
45 cd03457 intradiol_dioxygenase_ 60.4 13 0.00029 27.4 3.5 26 49-74 85-110 (188)
46 PF01175 Urocanase: Urocanase; 53.0 18 0.00039 31.0 3.5 29 124-152 272-300 (546)
47 cd03459 3,4-PCD Protocatechuat 52.8 22 0.00047 25.5 3.5 25 50-74 72-101 (158)
48 PF06113 BRE: Brain and reprod 49.7 25 0.00055 28.4 3.7 24 51-74 306-329 (333)
49 PF03366 YEATS: YEATS family; 49.5 61 0.0013 20.6 4.9 43 34-78 2-44 (84)
50 KOG0662 Cyclin-dependent kinas 48.8 19 0.00041 27.1 2.7 55 65-119 167-225 (292)
51 smart00340 HALZ homeobox assoc 46.5 18 0.0004 20.0 1.8 15 5-19 20-34 (44)
52 PF11333 DUF3135: Protein of u 40.1 64 0.0014 20.6 3.8 25 125-149 8-32 (83)
53 TIGR02423 protocat_alph protoc 38.4 46 0.001 24.7 3.4 25 49-73 95-124 (193)
54 PF14455 Metal_CEHH: Predicted 38.1 80 0.0017 22.8 4.4 65 7-75 8-76 (177)
55 cd05845 Ig2_L1-CAM_like Second 37.2 85 0.0019 20.4 4.2 26 48-75 16-41 (95)
56 cd03463 3,4-PCD_alpha Protocat 36.5 53 0.0012 24.2 3.5 23 51-73 93-120 (185)
57 PF00845 Gemini_BL1: Geminivir 36.2 93 0.002 24.2 4.8 48 31-78 100-155 (276)
58 KOG4445 Uncharacterized conser 34.0 51 0.0011 26.4 3.2 25 51-75 45-69 (368)
59 PF12018 DUF3508: Domain of un 33.3 70 0.0015 25.1 3.9 30 121-150 238-267 (281)
60 KOG0177 20S proteasome, regula 32.3 18 0.0004 26.8 0.5 28 84-111 135-162 (200)
61 KOG1047 Bifunctional leukotrie 30.8 54 0.0012 28.5 3.0 29 46-75 248-279 (613)
62 PF14135 DUF4302: Domain of un 30.5 2E+02 0.0043 21.8 5.9 73 3-86 8-104 (235)
63 PHA03200 uracil DNA glycosylas 29.6 78 0.0017 24.7 3.5 57 33-92 82-153 (255)
64 TIGR02439 catechol_proteo cate 29.0 77 0.0017 25.1 3.4 24 50-73 180-221 (285)
65 KOG3285 Spindle assembly check 28.1 1.3E+02 0.0027 22.4 4.1 42 4-45 119-160 (203)
66 PF09280 XPC-binding: XPC-bind 27.7 1E+02 0.0023 18.2 3.1 22 121-142 33-54 (59)
67 PF13950 Epimerase_Csub: UDP-g 27.3 70 0.0015 19.0 2.4 18 95-112 37-54 (62)
68 cd03461 1,2-HQD Hydroxyquinol 26.6 90 0.0019 24.6 3.4 25 49-73 171-213 (277)
69 TIGR00628 ung uracil-DNA glyco 26.0 1.4E+02 0.0031 22.5 4.3 17 32-50 49-65 (212)
70 PF07380 Pneumo_M2: Pneumoviru 25.5 1.3E+02 0.0029 19.1 3.4 25 57-81 7-36 (89)
71 TIGR02438 catachol_actin catec 25.2 1E+02 0.0022 24.4 3.5 24 50-73 184-225 (281)
72 cd03460 1,2-CTD Catechol 1,2 d 24.4 1E+02 0.0023 24.3 3.4 24 50-73 176-217 (282)
73 cd03464 3,4-PCD_beta Protocate 24.2 1.1E+02 0.0024 23.3 3.4 24 50-73 122-152 (220)
74 PF04881 Adeno_GP19K: Adenovir 23.4 84 0.0018 21.9 2.4 22 29-50 43-64 (139)
75 PF00779 BTK: BTK motif; Inte 23.1 31 0.00067 17.9 0.2 14 76-89 2-16 (32)
76 PF12065 DUF3545: Protein of u 22.8 67 0.0015 19.2 1.6 14 5-18 35-48 (59)
77 TIGR02422 protocat_beta protoc 22.5 1.2E+02 0.0027 23.0 3.4 24 50-73 117-147 (220)
78 TIGR02465 chlorocat_1_2 chloro 22.0 1.3E+02 0.0028 23.3 3.5 25 49-73 149-191 (246)
79 PF03487 IL13: Interleukin-13; 21.6 1E+02 0.0023 16.9 2.1 17 3-19 26-42 (43)
80 PRK15486 hpaC 4-hydroxyphenyla 20.9 3.3E+02 0.0072 19.6 7.2 68 10-94 7-77 (170)
81 COG1343 CRISPR-associated prot 20.7 2.5E+02 0.0054 18.1 4.7 45 1-46 39-83 (89)
82 PF10346 Con-6: Conidiation pr 20.5 1.6E+02 0.0034 15.7 3.8 18 103-120 4-21 (36)
83 PRK04184 DNA topoisomerase VI 20.4 4E+02 0.0086 23.2 6.4 81 3-86 294-388 (535)
No 1
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-56 Score=301.90 Aligned_cols=152 Identities=84% Similarity=1.371 Sum_probs=149.7
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCcccc
Q 031856 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpn 80 (152)
||+.|.|||++|++.++++++.|++..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031856 81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
|+.+|.+|+|+|...|+|.|++.+||.+||++|.+|++++|+|.|||++|++|+.+|.+++++.|++|...+
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~~ 152 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSDI 152 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998753
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-56 Score=314.45 Aligned_cols=150 Identities=55% Similarity=1.056 Sum_probs=145.3
Q ss_pred CCh-HHHHHHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCcc
Q 031856 1 MST-PAKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 1 Ms~-~a~~Rl~~E~~~l~~~~~~g~~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~H 78 (152)
|++ .|.+||++|++.+++++++|+++.|..+ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 444 4999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 79 pnv~~~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|.++||++++++++
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-56 Score=308.50 Aligned_cols=146 Identities=44% Similarity=0.922 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCC
Q 031856 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
|.+||.+|++++++++++||++.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 85 G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|.||+|+|+..|+|+++|..||.+|+++|.+|++++|++.+++++|+.|+.+|.++||+|++++++
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.7e-51 Score=293.21 Aligned_cols=146 Identities=38% Similarity=0.783 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCC
Q 031856 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
+.|||++|++++++++++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 85 G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|++++++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998764
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-50 Score=288.94 Aligned_cols=145 Identities=48% Similarity=0.924 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCC
Q 031856 5 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD 84 (152)
Q Consensus 5 a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~ 84 (152)
|.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031856 85 GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 85 G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~ 149 (152)
|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=266.90 Aligned_cols=149 Identities=44% Similarity=0.831 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeecC-CCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccc
Q 031856 3 TPAKKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (152)
Q Consensus 3 ~~a~~Rl~~E~~~l~~~~~~g~~~~~~~-~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv 81 (152)
+.|..-|+++|++|++++.+|+++...+ .|+++|.+.|+||++|.|+||.|+..+.||.+||.+||+++|.|++|||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 4566778999999999999999999855 599999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeecCcC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031856 82 YADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 82 ~~~G~icl~~l~-------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s 148 (152)
+++|.+|+++|- +.|.|..|+++||++|.++|.+||.++|+|-|||+.|++++++|.+++++||.+|
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999999993 3599999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 031856 149 WTA 151 (152)
Q Consensus 149 ~~~ 151 (152)
+++
T Consensus 164 ~e~ 166 (171)
T KOG0425|consen 164 QEE 166 (171)
T ss_pred HHh
Confidence 875
No 7
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-46 Score=252.93 Aligned_cols=149 Identities=42% Similarity=0.883 Sum_probs=144.2
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEee-cCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccc
Q 031856 1 MSTPAKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHP 79 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~~~g~~~~~-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hp 79 (152)
|+..|+|||++||++|..++|+||.+.| ++||.++|.+.|.||+||+|+||.|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 7889999999999999999999999999 689999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeecCcC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHH
Q 031856 80 NIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 146 (152)
Q Consensus 80 nv~~~G~icl~~l~-------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~ 146 (152)
||+.+|+||+++|. +.|+|..+++.||.++.++|.+|+-++.+|.+|+.++++|+++|.+.|+..+.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999993 45999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 031856 147 QSW 149 (152)
Q Consensus 147 ~s~ 149 (152)
+++
T Consensus 161 KtL 163 (165)
T KOG0426|consen 161 KTL 163 (165)
T ss_pred Hhh
Confidence 875
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-46 Score=255.61 Aligned_cols=150 Identities=40% Similarity=0.797 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeec-----CCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031856 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQ-----DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~~~g~~~~~~-----~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
||+.++.||+.|-+.+.++.|-|+++.|. ..|+..|.+.|.|++||+|+||.|.+.+.||++||.+||++.|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 89999999999999999999999999994 3478999999999999999999999999999999999999999999
Q ss_pred CccccccCCCceeecCcCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 76 MFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 76 i~Hpnv~~~G~icl~~l~~~--W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
+|||||+.+|.||+++|.++ |+|++||.+||.+||.||.+||..+|+|.||...|.+|+.+|.++||.++++..+
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999865 9999999999999999999999999999999999999999999999999998764
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9.5e-46 Score=261.77 Aligned_cols=138 Identities=49% Similarity=1.017 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCCCc
Q 031856 8 RLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 8 Rl~~E~~~l~~~~~~g~~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~G~ 86 (152)
||++|+++++++++.|+++.+.++ |+.+|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcCC-CCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHH
Q 031856 87 ICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIV 145 (152)
Q Consensus 87 icl~~l~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~ 145 (152)
||+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999985 499999999999999999999999999999999999999999999999984
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-46 Score=264.71 Aligned_cols=149 Identities=37% Similarity=0.732 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCc
Q 031856 1 MSTPAKKRLMRDFKRLQQDP---PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF 77 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~---~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~ 77 (152)
||. +.+||++|.+++.+++ ..||.++..++|+.+..+.|.||+||||+||.|.++|++|++|||+||+|+|.|+||
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 788 9999999999999988 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 78 HPNIY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 78 Hpnv~-~~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
||||+ .+|.||+|++.+.|.+++||.++|.+||++|..|++.+|.+.+.+++|.++++.|.+.||.|+...+.
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 99998 68999999999999999999999999999999999999999999999999999999999999988764
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=4e-45 Score=258.89 Aligned_cols=139 Identities=50% Similarity=1.048 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCCCc
Q 031856 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 7 ~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~G~ 86 (152)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcCCC-CCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHH
Q 031856 87 ICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIV 145 (152)
Q Consensus 87 icl~~l~~~-W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~ 145 (152)
||++++..+ |+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999877 99999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=9e-44 Score=253.06 Aligned_cols=142 Identities=48% Similarity=1.004 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEeecCC-CcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCCC
Q 031856 7 KRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (152)
Q Consensus 7 ~Rl~~E~~~l~~~~~~g~~~~~~~~-n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~G 85 (152)
+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999999765 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031856 86 SICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 148 (152)
Q Consensus 86 ~icl~~l~-~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s 148 (152)
.||++.+. ++|+|++++.++|.+|+++|.+|+.++++|.||+++|.+++++|.++|++++.++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999999999999999999999999999999999999999999999886
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-44 Score=244.92 Aligned_cols=143 Identities=44% Similarity=0.845 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccC
Q 031856 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 4 ~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~ 83 (152)
...|||+.|+..|.....+||++.|.+||++.|.++|.||++|+|+|-.|++.+.||.+||++||.|.|+|+.|||||+.
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~ 108 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL 108 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHH
Q 031856 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 147 (152)
Q Consensus 84 ~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~ 147 (152)
.|.||+|+|++.|+..+++++||.+||++|-+|+..+|+|..||+++. |.++|++.+.++-++
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999 999999998887654
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=227.99 Aligned_cols=145 Identities=26% Similarity=0.653 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeE-EeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccC
Q 031856 5 AKKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 5 a~~Rl~~E~~~l~~~~~~g~~-~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~ 83 (152)
|.+||.+|+.+|++++...+. +...+.|++.|++.| .|++-||..|.|++.|.||.+|||+||+|.|.|+||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~ll-ipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLL-IPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEe-cCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 789999999999999877654 555789999999999 688899999999999999999999999999999999999999
Q ss_pred CCceeecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 84 DGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 84 ~G~icl~~l~-~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
.|.+|+.++. ++|.|++...+||+.|..++.+|+++.|++.|+|..|.+|+..|.++|.++++++.+
T Consensus 82 ~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 82 KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999995 789999999999999999999999999999999999999999999999999999765
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=228.16 Aligned_cols=146 Identities=36% Similarity=0.759 Sum_probs=136.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCcccc
Q 031856 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpn 80 (152)
||+ ..||+..|...|... +..+...++++.+++|.+.||.+|||+||+|++.|.+|++||++.|.|.|.|+|||||
T Consensus 1 ms~-~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred CCC-cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 444 568999999888875 6678888999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceeecCcCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 81 IY-ADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 81 v~-~~G~icl~~l~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
|+ .+|.||+++++..|+|.+++..|+.. |-.+|..||+.||+|.|||.+|..++++|.+++++++++++.
T Consensus 77 IDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred chhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99 68999999999999999999999966 678999999999999999999999999999999999999875
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-38 Score=222.26 Aligned_cols=144 Identities=31% Similarity=0.692 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeecCCCcc--eEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCcccc
Q 031856 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIM--LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN 80 (152)
Q Consensus 3 ~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpn 80 (152)
+.|+-||++|..++..-+...+++....+++. +..++| -|+.+.|.||.|.|.+.+|+.||++||+|.++|+|||||
T Consensus 27 s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti-~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTI-TPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred cHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEE-ccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 56788888888887764433333333344444 488988 688889999999999999999999999999999999999
Q ss_pred ccCCCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHH
Q 031856 81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 147 (152)
Q Consensus 81 v~~~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~ 147 (152)
|+.+|.||+++|+++|+|..+|.+|+.+|+.+|.+|+++||+|.|||.+++.|++.|..+||+.+..
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~g 172 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSG 172 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999987753
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=214.38 Aligned_cols=146 Identities=36% Similarity=0.710 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccC
Q 031856 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
Q Consensus 4 ~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~ 83 (152)
...|.+.+|++.+...||.||.|.+.++|.....+.|.||.||||++|.|++.+.+..+||.+||+-+|+|+||||||-.
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCCcCHHHHHHHHHCHHHHHHHHHHHHHHhh
Q 031856 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 84 ~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~s~ 149 (152)
+|.||.+.|..+|+|..+|..||..|+.+|..|++++.+|.||.+++.++.++|.++||-+++-+.
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa 155 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHA 155 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999998887554
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=181.64 Aligned_cols=116 Identities=35% Similarity=0.712 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccC-ccc
Q 031856 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHP 79 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i-~Hp 79 (152)
|+..|.+||++|+.+++.++|.|+... ..+|+.+|.+-+.|.+||.|+|-.|.++++||+.||++.|.|.|..++ .||
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 456789999999999999999999877 788999999999999999999999999999999999999999999875 799
Q ss_pred cccCCCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCC
Q 031856 80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPN 117 (152)
Q Consensus 80 nv~~~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~ 117 (152)
+|+++|-||+++|.++|+|++++.+|-.+|.++|+.-.
T Consensus 91 HiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~ 128 (161)
T KOG0427|consen 91 HIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSK 128 (161)
T ss_pred ceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999998543
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-30 Score=187.78 Aligned_cols=113 Identities=36% Similarity=0.765 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc--Cccc
Q 031856 2 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHP 79 (152)
Q Consensus 2 s~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~--i~Hp 79 (152)
+..|.|||++||+.|+++|.++|.+.|.++|+++||.+|.||+||||+||.|+.+|.||++||++||.|+++|| .|-+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt 82 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT 82 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999996 3333
Q ss_pred cccCCCceeecCcC---CCCCCcCCHHHHHHHHHHhhcCCCC
Q 031856 80 NIYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 118 (152)
Q Consensus 80 nv~~~G~icl~~l~---~~W~p~~~l~~il~~i~~~l~~p~~ 118 (152)
+.++|+++.. +.|+|++++.+||.+|.++|.+..+
T Consensus 83 ----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 83 ----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred ----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 4699998874 7899999999999999999976544
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-30 Score=187.54 Aligned_cols=144 Identities=28% Similarity=0.511 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCC--CCCeeeEeccCcccccc-C
Q 031856 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPN--KPPTVRFVSRMFHPNIY-A 83 (152)
Q Consensus 7 ~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~--~pP~i~f~t~i~Hpnv~-~ 83 (152)
-.|+.||..+++.+.+||++.|+..|-+.|.++|++..| .|.||+|+|+|.+|++||. .-|+|.|.+.++||+|. .
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 357889999999999999999999999999999999998 8999999999999999995 47999999999999999 5
Q ss_pred CCceeecCcCCCCCCc-CCHHHHHHHHHHhhcCCCCCCC--cCHHHHHHHHHCHHHHHHHHHHHHHHhhhc
Q 031856 84 DGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP--ANSEAARLFSENKREYNRRVREIVEQSWTA 151 (152)
Q Consensus 84 ~G~icl~~l~~~W~p~-~~l~~il~~i~~~l~~p~~~~~--~n~ea~~~~~~~~~~f~~~~~~~~~~s~~~ 151 (152)
++.+|++-....|+.. .+|+++|..+|.+|++|+-..+ .|+||+.+|++++++|.++|++||+.|...
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~ 171 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSM 171 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8999999988889987 7899999999999999998765 599999999999999999999999998764
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-23 Score=154.20 Aligned_cols=112 Identities=29% Similarity=0.668 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCcccccc
Q 031856 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIY 82 (152)
Q Consensus 3 ~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~ 82 (152)
+.|.|||++|.++++ +|...+...|.++|+++|+.+|.||.||-|+||+|+..|.||.+||++||.+..+|+ +..+.
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCcee
Confidence 578999999999999 777778899999999999999999999999999999999999999999999999985 22334
Q ss_pred CCCceeecCcC---CCCCCcCCHHHHHHHHHHhhc-CCC
Q 031856 83 ADGSICLDILQ---NQWSPIYDVAAILTSIQSLLC-DPN 117 (152)
Q Consensus 83 ~~G~icl~~l~---~~W~p~~~l~~il~~i~~~l~-~p~ 117 (152)
-+..||+++.. +.|.|+++|.+.|..|..+|- .|+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 56789999885 789999999999999998884 444
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.4e-18 Score=145.60 Aligned_cols=113 Identities=36% Similarity=0.721 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc--CccccccCC
Q 031856 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR--MFHPNIYAD 84 (152)
Q Consensus 7 ~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~--i~Hpnv~~~ 84 (152)
+..+.|++-|..+-|.||.|...++.+....++|.|+.||||..|.|.|++.||.+||..||.+...+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 345567888888899999999999999999999999999999999999999999999999999999985 689999999
Q ss_pred CceeecCcC-------CCCCCcCCHHHHHHHHHHhhcC--CCCC
Q 031856 85 GSICLDILQ-------NQWSPIYDVAAILTSIQSLLCD--PNPN 119 (152)
Q Consensus 85 G~icl~~l~-------~~W~p~~~l~~il~~i~~~l~~--p~~~ 119 (152)
|+||+++|+ +-|+|+-++.++|.+||.+..+ |.++
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~n 977 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFN 977 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccC
Confidence 999999995 4599999999999999998764 5544
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1e-15 Score=133.12 Aligned_cols=113 Identities=35% Similarity=0.770 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc---Ccccc
Q 031856 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR---MFHPN 80 (152)
Q Consensus 4 ~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~---i~Hpn 80 (152)
.-.+|+++|++-+.++.|+|+.+.+.+..+....+.|.||.||||++|+|.|+|.||..||..||.+.++|. .+.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 346899999999999999999999999999999999999999999999999999999999999999999987 67999
Q ss_pred ccCCCceeecCcC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 031856 81 IYADGSICLDILQ-------NQWSPI-YDVAAILTSIQSLLCDP 116 (152)
Q Consensus 81 v~~~G~icl~~l~-------~~W~p~-~~l~~il~~i~~~l~~p 116 (152)
.+.+|+||+++|. +.|+|. .++.++|..||.++.+.
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9999999999983 579998 88999999999998754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.3e-13 Score=93.34 Aligned_cols=109 Identities=20% Similarity=0.475 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEee--cCCC--cceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccc
Q 031856 6 KKRLMRDFKRLQQDPPAGISGAP--QDNN--IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI 81 (152)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~g~~~~~--~~~n--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv 81 (152)
--||++|+..-++.-.+|..-.. ..+| +..|.++|.||+.|+||+.+|.++|..-++||..||.++|.|++--+.|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 45788888877665444433222 2333 3589999999999999999999999999999999999999999988888
Q ss_pred c-CCCceeecCc--CCCCCCcCCHHHHHHHHHHhhc
Q 031856 82 Y-ADGSICLDIL--QNQWSPIYDVAAILTSIQSLLC 114 (152)
Q Consensus 82 ~-~~G~icl~~l--~~~W~p~~~l~~il~~i~~~l~ 114 (152)
. .+|.|.-..+ ..+|...++++.+|..++..+.
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 7 5666665333 3789999999999999986554
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.70 E-value=8.6e-08 Score=67.14 Aligned_cols=67 Identities=34% Similarity=0.691 Sum_probs=60.4
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeeEeccC---ccccccCCCceee---cCcCCCCCCcCCHHHHHHHHHHhhcC
Q 031856 49 DGGTFKLTLQFTEDYPNKPPTVRFVSRM---FHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD 115 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP~~pP~i~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~l~~il~~i~~~l~~ 115 (152)
.|+.+.+.|.+|++||..||.|....+. +=|||+.+|.+|+ ...-+.|.|.-.+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6899999999999 66678899999999999999999883
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.7e-08 Score=64.74 Aligned_cols=74 Identities=26% Similarity=0.543 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCCCCCCCeeeEeccCc-cccccCCCceeecCcC-CCCCCcCCHHHHHHHHHHhhcCCCCC--CCcCHH
Q 031856 52 TFKLTLQFTEDYPNKPPTVRFVSRMF-HPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPN--SPANSE 125 (152)
Q Consensus 52 ~f~~~i~fp~~yP~~pP~i~f~t~i~-Hpnv~~~G~icl~~l~-~~W~p~~~l~~il~~i~~~l~~p~~~--~~~n~e 125 (152)
..-+.+.|+++||+.||.++...|+- ..-|-.+|+||+.++. ++|+.+++++.++.+|...+...... .+++.+
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~ 89 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKS 89 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchh
Confidence 45677889999999999999887642 3334578999999995 78999999999999999999987653 455444
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.38 E-value=2e-06 Score=59.28 Aligned_cols=78 Identities=19% Similarity=0.496 Sum_probs=54.4
Q ss_pred cceEEEEEECCCCCCCCCcEE--EEEEEeCCCCCCCCCeeeEeccCc-----cccccCCCceeecCcCCCCCC-cCCHHH
Q 031856 33 IMLWNAVIFGPDDTPWDGGTF--KLTLQFTEDYPNKPPTVRFVSRMF-----HPNIYADGSICLDILQNQWSP-IYDVAA 104 (152)
Q Consensus 33 ~~~w~~~i~gp~~tpy~gg~f--~~~i~fp~~yP~~pP~i~f~t~i~-----Hpnv~~~G~icl~~l~~~W~p-~~~l~~ 104 (152)
+....++|. -.|+|..| .+.|.+|.+||.+||.+....... +.+|+.+|+|.+..| .+|.+ ..+|.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 445566662 24888777 577889999999999998864322 449999999988877 56887 688999
Q ss_pred HHHHHHHhhcC
Q 031856 105 ILTSIQSLLCD 115 (152)
Q Consensus 105 il~~i~~~l~~ 115 (152)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999988863
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.16 E-value=2.3e-06 Score=59.69 Aligned_cols=95 Identities=23% Similarity=0.439 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCc----------EEEEEEEeCCCCCCCCCeeeEecc
Q 031856 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG----------TFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
..||+.||..|-+ +++....+-..|.-+=--++||-|.|. .|.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 5799999999876 444444445556555555667776664 366777889999999999986532
Q ss_pred -CccccccCCCceeecCcC-CCC---CCcCCHHHHH
Q 031856 76 -MFHPNIYADGSICLDILQ-NQW---SPIYDVAAIL 106 (152)
Q Consensus 76 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~l~~il 106 (152)
--..-.+..|.||++..+ .=| .|.++|...|
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 123455678999998774 234 5667777665
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00062 Score=54.06 Aligned_cols=82 Identities=20% Similarity=0.512 Sum_probs=62.9
Q ss_pred CcceEEEEEECCCCCCCCCcEE--EEEEEeCCCCCCCCCeeeEecc-----CccccccCCCceeecCcCCCCCC-cCCHH
Q 031856 32 NIMLWNAVIFGPDDTPWDGGTF--KLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQNQWSP-IYDVA 103 (152)
Q Consensus 32 n~~~w~~~i~gp~~tpy~gg~f--~~~i~fp~~yP~~pP~i~f~t~-----i~Hpnv~~~G~icl~~l~~~W~p-~~~l~ 103 (152)
+++...++| -.+|.|..| .+.|.+.+.||..||.+..... --|-+|+.+|.|.+..|. +|.+ +.+|.
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 445555555 346888776 5677899999999999966532 138999999999999984 6875 58899
Q ss_pred HHHHHHHHhhcCCCC
Q 031856 104 AILTSIQSLLCDPNP 118 (152)
Q Consensus 104 ~il~~i~~~l~~p~~ 118 (152)
.+++.+.+.|.++.+
T Consensus 126 ~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999999886543
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0012 Score=45.59 Aligned_cols=95 Identities=21% Similarity=0.439 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcE----------EEEEEEeCCCCCCCCCeeeEecc
Q 031856 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGT----------FKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
..||+.||+.|.. +++-..++-..|.-.--.++||-|-|.. |.++..+|-.||..+|.|..---
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 5799999998876 3444555666676666668888888853 56667789999999998865321
Q ss_pred -CccccccCCCceeecCc-CCCCC---CcCCHHHHH
Q 031856 76 -MFHPNIYADGSICLDIL-QNQWS---PIYDVAAIL 106 (152)
Q Consensus 76 -i~Hpnv~~~G~icl~~l-~~~W~---p~~~l~~il 106 (152)
--.-..+..|.||+... ..-|. |.+++...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 01123456899999654 34464 445665543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.73 E-value=0.009 Score=39.67 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEEC--CCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccC
Q 031856 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM 76 (152)
Q Consensus 7 ~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i 76 (152)
.+...|+..|+.--+..+ ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456778888876433333 23334455556666622 2344455568999999999999999999887653
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.72 E-value=0.039 Score=38.02 Aligned_cols=89 Identities=18% Similarity=0.348 Sum_probs=59.8
Q ss_pred CeEEeecCCCcceEEEEEEC--CCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCCCce--eecCc------
Q 031856 23 GISGAPQDNNIMLWNAVIFG--PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSI--CLDIL------ 92 (152)
Q Consensus 23 g~~~~~~~~n~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~G~i--cl~~l------ 92 (152)
|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|..||..+|.+-+..|-.... ..|.+ |.+..
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 6777776666666765 444 23447999999999999999999999887776533211 11222 22211
Q ss_pred --------CCCCCCc-CCHHHHHHHHHHhhc
Q 031856 93 --------QNQWSPI-YDVAAILTSIQSLLC 114 (152)
Q Consensus 93 --------~~~W~p~-~~l~~il~~i~~~l~ 114 (152)
...|+|. -+|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 2458987 569999988877664
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.74 E-value=0.02 Score=41.46 Aligned_cols=62 Identities=24% Similarity=0.455 Sum_probs=48.6
Q ss_pred EEEEEeCCCCCCCCCeeeEeccCc---cccccCC-----CceeecCcC-CCCCCcCCHHHHHHHHHHhhcC
Q 031856 54 KLTLQFTEDYPNKPPTVRFVSRMF---HPNIYAD-----GSICLDILQ-NQWSPIYDVAAILTSIQSLLCD 115 (152)
Q Consensus 54 ~~~i~fp~~yP~~pP~i~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~l~~il~~i~~~l~~ 115 (152)
.+.|.|+.+||..+|.+.++-..| +||+... ..+|+.--. .+|.+..++..+|..|...|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 356899999999999887776543 5888754 678985443 5699999999999999887753
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.72 E-value=0.084 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=22.7
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031856 49 DGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
....+.+.+.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988763
No 35
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.62 E-value=1.6 Score=32.86 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=25.4
Q ss_pred EEEEEECCCCC--CCCCcEEEEEEEeCCCCCCCCCeeeEe
Q 031856 36 WNAVIFGPDDT--PWDGGTFKLTLQFTEDYPNKPPTVRFV 73 (152)
Q Consensus 36 w~~~i~gp~~t--py~gg~f~~~i~fp~~yP~~pP~i~f~ 73 (152)
+.+.|.-..|. -|.| .+.+.+.++++||.++|.|.+.
T Consensus 33 f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 33 FEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred ceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 55555333322 2333 7889999999999999999444
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.63 E-value=2.2 Score=38.03 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEE-EEEEEeCCCCCCC-CCeeeEecc
Q 031856 8 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTF-KLTLQFTEDYPNK-PPTVRFVSR 75 (152)
Q Consensus 8 Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f-~~~i~fp~~yP~~-pP~i~f~t~ 75 (152)
-|.+|+.-+-. .-+++.++..+-.-..-.+.+.+|-. +-.|-+| ++.|.||.+||.+ +|.++|..+
T Consensus 424 nLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhc-cccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 45556654432 33455555444455667778877765 3355555 8999999999995 799999864
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=88.14 E-value=1.2 Score=35.30 Aligned_cols=85 Identities=19% Similarity=0.378 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCccccccCCC
Q 031856 6 KKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADG 85 (152)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~Hpnv~~~G 85 (152)
.++|.+|+.++..+.. +++ ..++++....+.+..-. ....++|.++.+||.++|.+...-++
T Consensus 101 ys~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~D~~------R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIFDSS------RQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEETTC------EEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccc--eEE-ecCCCccEEEEEEEcCC------ceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 4567788887776432 222 13667777777775221 57789999999999999975433322
Q ss_pred ceeecCcCCCCCC-cCCHHHHHHHHHHhh
Q 031856 86 SICLDILQNQWSP-IYDVAAILTSIQSLL 113 (152)
Q Consensus 86 ~icl~~l~~~W~p-~~~l~~il~~i~~~l 113 (152)
.+...|.+ ..++.+++...+..+
T Consensus 163 -----~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 -----PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred -----chhhhhcccccCHHHHHHHHHHHH
Confidence 11235777 567777766655443
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=85.66 E-value=5.3 Score=32.21 Aligned_cols=67 Identities=24% Similarity=0.474 Sum_probs=46.4
Q ss_pred CcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEe-ccCccccccCCCceeecCcCCCCCCc--CCHHHHHHH
Q 031856 32 NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-SRMFHPNIYADGSICLDILQNQWSPI--YDVAAILTS 108 (152)
Q Consensus 32 n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~-t~i~Hpnv~~~G~icl~~l~~~W~p~--~~l~~il~~ 108 (152)
......+.| ||.|-..+-+|.|...||..||-+.|- ..-|+|-... +.. ..+|.+. .++..++..
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~-L~~Wd~~dp~~Ll~li~E 119 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPS-LVNWDPSDPNCLLNLISE 119 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cch-hhcCCCCCchHHHHHHHH
Confidence 345677777 899999999999999999999999996 3347774321 111 2568765 335555554
Q ss_pred HH
Q 031856 109 IQ 110 (152)
Q Consensus 109 i~ 110 (152)
+.
T Consensus 120 L~ 121 (333)
T PF06113_consen 120 LR 121 (333)
T ss_pred HH
Confidence 43
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=84.31 E-value=1.7 Score=31.68 Aligned_cols=46 Identities=20% Similarity=0.404 Sum_probs=27.4
Q ss_pred eccCcc---ccccCCCceeecCcCCCCCCcCCHHHHHHHHHHhhcCCCCCCC
Q 031856 73 VSRMFH---PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 121 (152)
Q Consensus 73 ~t~i~H---pnv~~~G~icl~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~~ 121 (152)
.|++|| +||+.+|.||+.... .|.....+.+......|.+....++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 455676 699999999997643 3444444456666544443334333
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=73.41 E-value=6.7 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=29.1
Q ss_pred ccCcc---ccccCCCceeecCcCCCCCCc-CCHHHHHHHHHHhhcCCCCCC
Q 031856 74 SRMFH---PNIYADGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNS 120 (152)
Q Consensus 74 t~i~H---pnv~~~G~icl~~l~~~W~p~-~~l~~il~~i~~~l~~p~~~~ 120 (152)
|++|| .||+.+|.||+.... .|. .++.+ +......|.+-.+..
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH 177 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTH 177 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccC
Confidence 45666 488899999997654 554 56666 777777666544433
No 41
>PRK05414 urocanate hydratase; Provisional
Probab=69.08 E-value=13 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=25.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031856 124 SEAARLFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
.|+.++-++|+++|.++|++++.++.+.|
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 310 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHVEAM 310 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999887654
No 42
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=68.36 E-value=14 Score=31.57 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031856 124 SEAARLFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
.|+.++-.+|+++|.+.|++++.++...|
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv~Am 301 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHVRAM 301 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999999999999887654
No 43
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=66.23 E-value=14 Score=31.16 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031856 124 SEAARLFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
.|+.++-.+|+++|.+.|++.+.++.+.|
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv~Am 310 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHVEAM 310 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999999999988765
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=62.18 E-value=13 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.632 Sum_probs=22.9
Q ss_pred CCcEEEEEEEeCCCCC-CCCCeeeEec
Q 031856 49 DGGTFKLTLQFTEDYP-NKPPTVRFVS 74 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP-~~pP~i~f~t 74 (152)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3489999999999999 9999998874
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=60.38 E-value=13 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeeEec
Q 031856 49 DGGTFKLTLQFTEDYPNKPPTVRFVS 74 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP~~pP~i~f~t 74 (152)
+.|.|.|.-.+|--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 45899999999999999999999874
No 46
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=52.97 E-value=18 Score=30.98 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.9
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhhhcC
Q 031856 124 SEAARLFSENKREYNRRVREIVEQSWTAD 152 (152)
Q Consensus 124 ~ea~~~~~~~~~~f~~~~~~~~~~s~~~~ 152 (152)
.|+.++.++|+++|.+.+++++.++.+.|
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv~Am 300 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHVEAM 300 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999999999887653
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=52.76 E-value=22 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=22.2
Q ss_pred CcEEEEEEEeCCCCC-----CCCCeeeEec
Q 031856 50 GGTFKLTLQFTEDYP-----NKPPTVRFVS 74 (152)
Q Consensus 50 gg~f~~~i~fp~~yP-----~~pP~i~f~t 74 (152)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 378999999999999 8999998874
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=49.75 E-value=25 Score=28.40 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.7
Q ss_pred cEEEEEEEeCCCCCCCCCeeeEec
Q 031856 51 GTFKLTLQFTEDYPNKPPTVRFVS 74 (152)
Q Consensus 51 g~f~~~i~fp~~yP~~pP~i~f~t 74 (152)
-.|-++|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 458889999999999999999987
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=49.47 E-value=61 Score=20.61 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred ceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEeccCcc
Q 031856 34 MLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 34 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~i~H 78 (152)
..|.+.+.|+.+.....-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999988864444555777888888775 77766666543
No 50
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=48.84 E-value=19 Score=27.09 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=44.2
Q ss_pred CCCCeeeEeccCcccccc--CCCceeecCcCCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 031856 65 NKPPTVRFVSRMFHPNIY--ADGSICLDILQNQW--SPIYDVAAILTSIQSLLCDPNPN 119 (152)
Q Consensus 65 ~~pP~i~f~t~i~Hpnv~--~~G~icl~~l~~~W--~p~~~l~~il~~i~~~l~~p~~~ 119 (152)
..||.|-|-.+.|..-|+ +.|-|-..+.+.+| -|+.++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 468999999999999998 56766666666676 47889999999999988877653
No 51
>smart00340 HALZ homeobox associated leucin zipper.
Probab=46.49 E-value=18 Score=20.05 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhC
Q 031856 5 AKKRLMRDFKRLQQD 19 (152)
Q Consensus 5 a~~Rl~~E~~~l~~~ 19 (152)
.-+||++|+.+|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 458999999998863
No 52
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=40.12 E-value=64 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHhh
Q 031856 125 EAARLFSENKREYNRRVREIVEQSW 149 (152)
Q Consensus 125 ea~~~~~~~~~~f~~~~~~~~~~s~ 149 (152)
+...++++|+++|....++.+++-+
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~I 32 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEMI 32 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 5677889999999999888877644
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=38.45 E-value=46 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=21.2
Q ss_pred CCcEEEEEEEeCCCCCC-----CCCeeeEe
Q 031856 49 DGGTFKLTLQFTEDYPN-----KPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP~-----~pP~i~f~ 73 (152)
+.|.|.|.-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 88888876
No 54
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=38.11 E-value=80 Score=22.76 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhCC----CCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031856 7 KRLMRDFKRLQQDP----PAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 7 ~Rl~~E~~~l~~~~----~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
+..-+|...+.... -.|+.+. +.+.-...+++..|+-.|- --.-.+++.|.+ |-..||.|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~~n-~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDFTN-WDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEeccc-cCcCCCceEEecc
Confidence 33555666665433 2366555 3344444454433444442 222456666755 9999999999977
No 55
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=37.18 E-value=85 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCCcEEEEEEEeCCCCCCCCCeeeEecc
Q 031856 48 WDGGTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 48 y~gg~f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46678888888899999 589988865
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=36.47 E-value=53 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.9
Q ss_pred cEEEEEEEeCCCCCC-----CCCeeeEe
Q 031856 51 GTFKLTLQFTEDYPN-----KPPTVRFV 73 (152)
Q Consensus 51 g~f~~~i~fp~~yP~-----~pP~i~f~ 73 (152)
|.|.|.-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 88888776
No 57
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=36.24 E-value=93 Score=24.21 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=31.9
Q ss_pred CCcceEEEEEECCCCCCCCC---cEEEEEEEeC-----CCCCCCCCeeeEeccCcc
Q 031856 31 NNIMLWNAVIFGPDDTPWDG---GTFKLTLQFT-----EDYPNKPPTVRFVSRMFH 78 (152)
Q Consensus 31 ~n~~~w~~~i~gp~~tpy~g---g~f~~~i~fp-----~~yP~~pP~i~f~t~i~H 78 (152)
.|..-|.+....-+...-.| ..|+..+.+. -+-||+||+|..+++-|.
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 45556887775444333334 2356666665 678999999999998664
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=33.97 E-value=51 Score=26.45 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.9
Q ss_pred cEEEEEEEeCCCCCCCCCeeeEecc
Q 031856 51 GTFKLTLQFTEDYPNKPPTVRFVSR 75 (152)
Q Consensus 51 g~f~~~i~fp~~yP~~pP~i~f~t~ 75 (152)
-.+.+.+..++.||..-|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567889999999999999999876
No 59
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=33.28 E-value=70 Score=25.06 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=26.7
Q ss_pred CcCHHHHHHHHHCHHHHHHHHHHHHHHhhh
Q 031856 121 PANSEAARLFSENKREYNRRVREIVEQSWT 150 (152)
Q Consensus 121 ~~n~ea~~~~~~~~~~f~~~~~~~~~~s~~ 150 (152)
-.+.+|+..|.++++.|...+.+.++++.+
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 478999999999999999999999988654
No 60
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.28 E-value=18 Score=26.81 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCceeecCcCCCCCCcCCHHHHHHHHHH
Q 031856 84 DGSICLDILQNQWSPIYDVAAILTSIQS 111 (152)
Q Consensus 84 ~G~icl~~l~~~W~p~~~l~~il~~i~~ 111 (152)
.+..|++++...|+|.+|.+..+.-++-
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkK 162 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKK 162 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHH
Confidence 4579999999999999998766655543
No 61
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=30.76 E-value=54 Score=28.55 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEEEeCCCCCC---CCCeeeEecc
Q 031856 46 TPWDGGTFKLTLQFTEDYPN---KPPTVRFVSR 75 (152)
Q Consensus 46 tpy~gg~f~~~i~fp~~yP~---~pP~i~f~t~ 75 (152)
+||.=|.|.+ +.+|++||+ +-|-++|+||
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788889986 558999997 4699999997
No 62
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=30.49 E-value=2e+02 Score=21.81 Aligned_cols=73 Identities=14% Similarity=0.296 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCC-------------------
Q 031856 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDY------------------- 63 (152)
Q Consensus 3 ~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~y------------------- 63 (152)
.++..||.+.++++++. ..+...-|.+.++...+.-|.| |.|.+.|.++=
T Consensus 8 ~s~~eR~~e~~~~~k~~---------L~~a~~GW~~~yyp~~~~~~GG--y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y 76 (235)
T PF14135_consen 8 KSPAERINEALAEYKKI---------LTSAPNGWKLEYYPKTDQSYGG--YTFLMKFDDDGKVTMASDFDSASTPSTSSY 76 (235)
T ss_pred CCHHHHHHHHHHHHHHH---------HhcCCCceEEEEECCCCccCCc--EEEEEEECCCCeEEEEEccCCCCceeeEEE
Confidence 34668888877766652 1233334777776433322333 66666666543
Q ss_pred C---CCCCeeeEec--cCccccccCCCc
Q 031856 64 P---NKPPTVRFVS--RMFHPNIYADGS 86 (152)
Q Consensus 64 P---~~pP~i~f~t--~i~Hpnv~~~G~ 86 (152)
- ..-|.+.|.| ++.|-..++.+.
T Consensus 77 ~~~~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 77 RLKQDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred EEecCCceEEEEEeCCceEEEccCCCcc
Confidence 1 2238888887 367776654433
No 63
>PHA03200 uracil DNA glycosylase; Provisional
Probab=29.55 E-value=78 Score=24.69 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=31.7
Q ss_pred cceEEEEEECCCCCCCCCcEEE-EEEEeCCCCCCCCCeeeEe-----------ccCcccccc---CCCceeecCc
Q 031856 33 IMLWNAVIFGPDDTPWDGGTFK-LTLQFTEDYPNKPPTVRFV-----------SRMFHPNIY---ADGSICLDIL 92 (152)
Q Consensus 33 ~~~w~~~i~gp~~tpy~gg~f~-~~i~fp~~yP~~pP~i~f~-----------t~i~Hpnv~---~~G~icl~~l 92 (152)
+....|+|.|-+ ||.||.=. +-...+.+++. ||..+=+ +..-|.+.. ..|.+.++..
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~NIfKEL~~d~~g~~~p~~G~L~~WAkQGVLLLNtv 153 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLKNVFRELERTVPNFSRPDSGCLDSWCRQGVLLLNTV 153 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHHHHHHHHHhhcCCCCCCCCCChhhHHhCCEEEEeee
Confidence 345789999876 88885432 22344666653 6655321 112244443 4677777655
No 64
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=29.00 E-value=77 Score=25.13 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.8
Q ss_pred CcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031856 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~fp~~yP------------------~~pP~i~f~ 73 (152)
.|.|.|.-..|.-|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 678999887
No 65
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.06 E-value=1.3e+02 Score=22.36 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCC
Q 031856 4 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDD 45 (152)
Q Consensus 4 ~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~ 45 (152)
-..+|+++|++.+.++--..++..|.-+..-.+.+.++.-++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC
Confidence 357899999999999888888888877777777887765443
No 66
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=27.71 E-value=1e+02 Score=18.21 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.2
Q ss_pred CcCHHHHHHHHHCHHHHHHHHH
Q 031856 121 PANSEAARLFSENKREYNRRVR 142 (152)
Q Consensus 121 ~~n~ea~~~~~~~~~~f~~~~~ 142 (152)
.-|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 4789999999999999998754
No 67
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=27.27 E-value=70 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=11.6
Q ss_pred CCCCcCCHHHHHHHHHHh
Q 031856 95 QWSPIYDVAAILTSIQSL 112 (152)
Q Consensus 95 ~W~p~~~l~~il~~i~~~ 112 (152)
+|.|.++|.+++......
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 699999999999876654
No 68
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=26.59 E-value=90 Score=24.63 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=21.3
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031856 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP------------------~~pP~i~f~ 73 (152)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 3488999999999998 578999887
No 69
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.04 E-value=1.4e+02 Score=22.51 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=12.9
Q ss_pred CcceEEEEEECCCCCCCCC
Q 031856 32 NIMLWNAVIFGPDDTPWDG 50 (152)
Q Consensus 32 n~~~w~~~i~gp~~tpy~g 50 (152)
.+....|+|.|-+ ||.|
T Consensus 49 p~~~vKVVIlGQD--PYh~ 65 (212)
T TIGR00628 49 PPEDVKVVILGQD--PYHG 65 (212)
T ss_pred ChhheEEEEecCC--CCCC
Confidence 4556899999876 7777
No 70
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=25.54 E-value=1.3e+02 Score=19.09 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=17.0
Q ss_pred EEeCCCCCCCCCeeeEecc-----Cccccc
Q 031856 57 LQFTEDYPNKPPTVRFVSR-----MFHPNI 81 (152)
Q Consensus 57 i~fp~~yP~~pP~i~f~t~-----i~Hpnv 81 (152)
+.||+.||-+--.+-..+. .-|-|+
T Consensus 7 mIlPdKYPCSIsSiLI~s~~~v~~~n~kn~ 36 (89)
T PF07380_consen 7 MILPDKYPCSISSILITSECRVTMYNHKNT 36 (89)
T ss_pred EEcCCCCCceeeEEEEeccceeEEEeccch
Confidence 6799999988766655543 236665
No 71
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=25.15 E-value=1e+02 Score=24.42 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.2
Q ss_pred CcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031856 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~fp~~yP------------------~~pP~i~f~ 73 (152)
.|.|.|.-..|..|| ..||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 488999999998887 578988886
No 72
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=24.43 E-value=1e+02 Score=24.33 Aligned_cols=24 Identities=21% Similarity=0.628 Sum_probs=20.4
Q ss_pred CcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031856 50 GGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~fp~~yP------------------~~pP~i~f~ 73 (152)
.|.|.|.-..|--|| ..||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999996 678888886
No 73
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.19 E-value=1.1e+02 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.6
Q ss_pred CcEEEEEEEeCCCCCC-------CCCeeeEe
Q 031856 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~fp~~yP~-------~pP~i~f~ 73 (152)
.|.|.|.-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4899999999999964 79999885
No 74
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=23.43 E-value=84 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.331 Sum_probs=17.7
Q ss_pred cCCCcceEEEEEECCCCCCCCC
Q 031856 29 QDNNIMLWNAVIFGPDDTPWDG 50 (152)
Q Consensus 29 ~~~n~~~w~~~i~gp~~tpy~g 50 (152)
.++|...|.|++.|++||+..-
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~ 64 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKS 64 (139)
T ss_pred cCCCCcceEEEEECCCCcceec
Confidence 5678888999999999986543
No 75
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.09 E-value=31 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.952 Sum_probs=8.3
Q ss_pred CccccccCCCc-eee
Q 031856 76 MFHPNIYADGS-ICL 89 (152)
Q Consensus 76 i~Hpnv~~~G~-icl 89 (152)
-|||.+..+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999987776 444
No 76
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=22.75 E-value=67 Score=19.19 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhh
Q 031856 5 AKKRLMRDFKRLQQ 18 (152)
Q Consensus 5 a~~Rl~~E~~~l~~ 18 (152)
-.+||++|+.++--
T Consensus 35 Dr~rL~kEL~d~D~ 48 (59)
T PF12065_consen 35 DRQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHHccc
Confidence 36789999887754
No 77
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.52 E-value=1.2e+02 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=20.7
Q ss_pred CcEEEEEEEeCCCCCC-------CCCeeeEe
Q 031856 50 GGTFKLTLQFTEDYPN-------KPPTVRFV 73 (152)
Q Consensus 50 gg~f~~~i~fp~~yP~-------~pP~i~f~ 73 (152)
.|.|.|.-..|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999885
No 78
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=21.99 E-value=1.3e+02 Score=23.29 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeeEe
Q 031856 49 DGGTFKLTLQFTEDYP------------------NKPPTVRFV 73 (152)
Q Consensus 49 ~gg~f~~~i~fp~~yP------------------~~pP~i~f~ 73 (152)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3488999999999997 468888886
No 79
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=21.59 E-value=1e+02 Score=16.86 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhhC
Q 031856 3 TPAKKRLMRDFKRLQQD 19 (152)
Q Consensus 3 ~~a~~Rl~~E~~~l~~~ 19 (152)
+.++|-|.+|+..+.++
T Consensus 26 ~~alkELIeELvNITqn 42 (43)
T PF03487_consen 26 STALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhhccC
Confidence 56888999999888775
No 80
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=20.90 E-value=3.3e+02 Score=19.62 Aligned_cols=68 Identities=18% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCCCCCCcEEEEEEEeCCCCCCCCCeeeEec---cCccccccCCCc
Q 031856 10 MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS---RMFHPNIYADGS 86 (152)
Q Consensus 10 ~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~i~f~t---~i~Hpnv~~~G~ 86 (152)
..++++....-+.|++|....++ +.+ .|-+-.--..+. .+||.|-+.= .--|+-+..+|.
T Consensus 7 ~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg~ 69 (170)
T PRK15486 7 RLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNGK 69 (170)
T ss_pred HHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCCe
Confidence 45688888888889987753211 111 222221111222 3689988762 366888889999
Q ss_pred eeecCcCC
Q 031856 87 ICLDILQN 94 (152)
Q Consensus 87 icl~~l~~ 94 (152)
+|+++|.+
T Consensus 70 F~VnvL~~ 77 (170)
T PRK15486 70 LCINVLNH 77 (170)
T ss_pred EEEEEChh
Confidence 99999953
No 81
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=20.69 E-value=2.5e+02 Score=18.14 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEeecCCCcceEEEEEECCCCC
Q 031856 1 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDT 46 (152)
Q Consensus 1 Ms~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~~w~~~i~gp~~t 46 (152)
|++....+|..+++.+....-..+.+.+...+... .....|++++
T Consensus 39 l~~~~~~~l~~~~~kii~~~~Dsi~iy~~~~~~~~-~~~~iG~~~~ 83 (89)
T COG1343 39 LTPADLEKLKRRLKKIIDEDEDSIRIYPLRRRAAR-TREVIGPEKS 83 (89)
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEEEccchhhc-cceeccCCCC
Confidence 45667788999999998776667777776554432 2233466663
No 82
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=20.54 E-value=1.6e+02 Score=15.75 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 031856 103 AAILTSIQSLLCDPNPNS 120 (152)
Q Consensus 103 ~~il~~i~~~l~~p~~~~ 120 (152)
..|+.++++-|.+|+..+
T Consensus 4 ~~V~~G~KAal~NPnvSe 21 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVSE 21 (36)
T ss_pred HHHHHHHHHHhcCCCcCH
Confidence 467888899999998753
No 83
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=20.37 E-value=4e+02 Score=23.19 Aligned_cols=81 Identities=23% Similarity=0.487 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeecCCCcc----------eEEEEEECCCCCCCCCcEEEEEEEeC--CCC-CC-CCC
Q 031856 3 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIM----------LWNAVIFGPDDTPWDGGTFKLTLQFT--EDY-PN-KPP 68 (152)
Q Consensus 3 ~~a~~Rl~~E~~~l~~~~~~g~~~~~~~~n~~----------~w~~~i~gp~~tpy~gg~f~~~i~fp--~~y-P~-~pP 68 (152)
.....||.+=+++..--.|++-++.|..+++. +|...+..++. .|.|+-|.+++-+- -+- |. .+=
T Consensus 294 ~~~~~~l~~~~~~~~~~~pp~~~lspige~~i~~gl~~~~~p~f~~~~tr~p~-~y~g~pfiVE~~iayGg~~~~~~~~~ 372 (535)
T PRK04184 294 REELERLVEAFKKYKFMAPPTACLSPIGEELIEKGLKKILKPEFVAAVTRKPK-VYSGHPFIVEVGIAYGGEIPPDDKPE 372 (535)
T ss_pred HHHHHHHHHHHHhccCcCCCCccCCCCCHHHHHHHHHHhcCccEEEEeccCCc-ccCCCCeEEEEEeeecCCCCCCCCce
Confidence 34556777777776555555557888654332 48888877766 69999887775543 333 22 234
Q ss_pred eeeEeccCccccccCCCc
Q 031856 69 TVRFVSRMFHPNIYADGS 86 (152)
Q Consensus 69 ~i~f~t~i~Hpnv~~~G~ 86 (152)
.++|.+++ |.++..|.
T Consensus 373 i~RfANrv--PLl~~~g~ 388 (535)
T PRK04184 373 LLRFANRV--PLLYDEGS 388 (535)
T ss_pred EEEEccCC--ceeecCCc
Confidence 67898887 88876554
Done!