Your job contains 1 sequence.
>031857
MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI
AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
RIHRLARYYKKTKKLPPVWKYESTTASTLVA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031857
(151 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126936 - symbol:RPS13A "ribosomal protein S13... 735 9.6e-73 1
TAIR|locus:2101901 - symbol:AT3G60770 species:3702 "Arabi... 730 3.2e-72 1
ASPGD|ASPL0000002296 - symbol:AN6679 species:162425 "Emer... 633 6.2e-62 1
UNIPROTKB|G4NCQ6 - symbol:MGG_00349 "40S ribosomal protei... 625 4.3e-61 1
UNIPROTKB|Q6ITC7 - symbol:RPS13 "40S ribosomal protein S1... 622 9.0e-61 1
UNIPROTKB|Q56JX8 - symbol:RPS13 "40S ribosomal protein S1... 622 9.0e-61 1
UNIPROTKB|P62277 - symbol:RPS13 "40S ribosomal protein S1... 622 9.0e-61 1
RGD|621027 - symbol:Rps13 "ribosomal protein S13" species... 622 9.0e-61 1
ZFIN|ZDB-GENE-040625-52 - symbol:rps13 "ribosomal protein... 615 5.0e-60 1
UNIPROTKB|F6Q5P0 - symbol:RPS13 "40S ribosomal protein S1... 611 1.3e-59 1
UNIPROTKB|E1BGR6 - symbol:E1BGR6 "Uncharacterized protein... 606 4.5e-59 1
FB|FBgn0010265 - symbol:RpS13 "Ribosomal protein S13" spe... 603 9.3e-59 1
POMBASE|SPAC6F6.07c - symbol:rps13 "40S ribosomal protein... 603 9.3e-59 1
SGD|S000002471 - symbol:RPS13 "Protein component of the s... 590 2.2e-57 1
WB|WBGene00004482 - symbol:rps-13 species:6239 "Caenorhab... 579 3.3e-56 1
GENEDB_PFALCIPARUM|PF13_0316 - symbol:PF13_0316 "40S ribo... 547 8.0e-53 1
UNIPROTKB|F1NGB4 - symbol:RPS13 "40S ribosomal protein S1... 532 3.1e-51 1
DICTYBASE|DDB_G0284533 - symbol:rps13 "40S ribosomal prot... 525 1.7e-50 1
UNIPROTKB|J3KMX5 - symbol:RPS13 "40S ribosomal protein S1... 439 2.2e-41 1
UNIPROTKB|P62279 - symbol:RPS13 "40S ribosomal protein S1... 439 2.2e-41 1
UNIPROTKB|I3L7A9 - symbol:I3L7A9 "Uncharacterized protein... 352 3.7e-32 1
UNIPROTKB|E9PS50 - symbol:RPS13 "40S ribosomal protein S1... 192 3.3e-15 1
UNIPROTKB|F1LXY1 - symbol:F1LXY1 "Uncharacterized protein... 185 1.8e-14 1
RGD|1309022 - symbol:Bco2 "beta-carotene oxygenase 2" spe... 110 1.6e-05 1
RGD|1597300 - symbol:Tex12 "testis expressed 12" species:... 110 1.6e-05 1
>TAIR|locus:2126936 [details] [associations]
symbol:RPS13A "ribosomal protein S13A" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS;TAS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000911 "cytokinesis by cell plate formation"
evidence=IMP] [GO:0009965 "leaf morphogenesis" evidence=IMP]
[GO:0010090 "trichome morphogenesis" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS;IDA;NAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0005794
"Golgi apparatus" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0009664 "plant-type cell wall organization"
evidence=RCA] [GO:0042545 "cell wall modification" evidence=RCA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 EnsemblPlants:AT4G00100.1 GO:GO:0005783
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0010090
GO:GO:0016020 GO:GO:0006412 GO:GO:0003735 GO:GO:0009965
EMBL:AL161471 GO:GO:0022627 EMBL:AF069299 GO:GO:0000911 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 PIR:T47888 eggNOG:COG0184
HOGENOM:HOG000180723 ProtClustDB:CLSN2689242 HAMAP:MF_01343_A
InterPro:IPR023029 EMBL:AB031739 EMBL:AF370471 EMBL:AY057544
EMBL:BT006543 EMBL:AY088038 EMBL:Z29915 IPI:IPI00520550 PIR:T01338
RefSeq:NP_567151.1 UniGene:At.24982 ProteinModelPortal:P59224
SMR:P59224 STRING:P59224 PaxDb:P59224 PRIDE:P59224 GeneID:828167
KEGG:ath:AT4G00100 GeneFarm:465 TAIR:At4g00100 InParanoid:P59224
OMA:MARMHAR PhylomeDB:P59224 Genevestigator:P59224
GermOnline:AT4G00100 Uniprot:P59224
Length = 151
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 143/151 (94%), Positives = 148/151 (98%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHSRGKGISASALPYKR+ PSWLK +SQDV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>TAIR|locus:2101901 [details] [associations]
symbol:AT3G60770 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR000589
InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362
EnsemblPlants:AT3G60770.1 GO:GO:0005618 GO:GO:0009507 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0006412 GO:GO:0003735
EMBL:AL162295 GO:GO:0022627 KO:K02953 InterPro:IPR009068
SUPFAM:SSF47060 EMBL:AF380636 EMBL:AY056088 EMBL:AY090366
EMBL:AY052731 EMBL:AF378861 EMBL:Z17784 IPI:IPI00518946 PIR:T47888
RefSeq:NP_567104.1 UniGene:At.23276 UniGene:At.73139
ProteinModelPortal:P59223 SMR:P59223 STRING:P59223 PaxDb:P59223
PRIDE:P59223 GeneID:825248 KEGG:ath:AT3G60770 GeneFarm:471
TAIR:At3g60770 eggNOG:COG0184 HOGENOM:HOG000180723
InParanoid:P59223 OMA:XVILRDS PhylomeDB:P59223
ProtClustDB:CLSN2689242 Genevestigator:P59223 GermOnline:AT3G60770
HAMAP:MF_01343_A InterPro:IPR023029 Uniprot:P59223
Length = 151
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 142/151 (94%), Positives = 147/151 (97%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHSRGKGISASALPYKR+ PSWLK + QDV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>ASPGD|ASPL0000002296 [details] [associations]
symbol:AN6679 species:162425 "Emericella nidulans"
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=IEA] [GO:0070181 "SSU rRNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 GO:GO:0006412 GO:GO:0005840 EMBL:BN001301
GO:GO:0003735 InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_A
InterPro:IPR023029 OMA:MARMHAR EnsemblFungi:CADANIAT00007464
Uniprot:C8V1L4
Length = 151
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 117/151 (77%), Positives = 137/151 (90%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGR+HS+GKGI++SALPY RTP W+KI+ + V D+ICK A+KG +PSQIGV+LRDSHG+
Sbjct: 1 MGRLHSKGKGIASSALPYSRTPAPWVKITPEQVVDHICKLARKGASPSQIGVVLRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQVK+VTG+KILRILK++GLAPEIPEDLYHLIKKAVA+RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 AQVKTVTGNKILRILKSNGLAPEIPEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRL+RYYK LPP WKYES TAST+VA
Sbjct: 121 RIHRLSRYYKTVGVLPPTWKYESATASTMVA 151
>UNIPROTKB|G4NCQ6 [details] [associations]
symbol:MGG_00349 "40S ribosomal protein S13" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 EMBL:CM001235 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0043581 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 HAMAP:MF_01343_A
InterPro:IPR023029 RefSeq:XP_003718734.1 ProteinModelPortal:G4NCQ6
SMR:G4NCQ6 EnsemblFungi:MGG_00349T0 GeneID:2675125
KEGG:mgr:MGG_00349 Uniprot:G4NCQ6
Length = 151
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 119/151 (78%), Positives = 132/151 (87%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHS GKGISASA+PY R PP+WLK + V + ICK A+KG TPSQIGV+LRDSHGI
Sbjct: 1 MGRMHSNGKGISASAIPYSRNPPAWLKTTPDQVVEQICKLARKGATPSQIGVVLRDSHGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQVK VTG+KILRILK++GLAP+IPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 AQVKIVTGNKILRILKSNGLAPDIPEDLYMLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK LPP WKYES TASTLVA
Sbjct: 121 RIHRLARYYKTVGVLPPTWKYESATASTLVA 151
>UNIPROTKB|Q6ITC7 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412 GO:GO:0003729
GO:GO:0003735 GO:GO:0033119 GO:GO:0022627 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR CTD:6207 GeneTree:ENSGT00390000017491
HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T EMBL:AY626809 IPI:IPI00574964
RefSeq:NP_001001783.1 UniGene:Gga.12646 ProteinModelPortal:Q6ITC7
SMR:Q6ITC7 STRING:Q6ITC7 PRIDE:Q6ITC7 Ensembl:ENSGALT00000009835
GeneID:414782 KEGG:gga:414782 InParanoid:Q6ITC7 NextBio:20818719
ArrayExpress:Q6ITC7 Uniprot:Q6ITC7
Length = 151
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/151 (77%), Positives = 137/151 (90%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK + LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>UNIPROTKB|Q56JX8 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 GO:GO:0005730
GO:GO:0006412 GO:GO:0003729 GO:GO:0003735 GO:GO:0033119
GO:GO:0022627 KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060
eggNOG:COG0184 HOGENOM:HOG000180723 HAMAP:MF_01343_A
InterPro:IPR023029 OMA:MARMHAR EMBL:AY911350 EMBL:BC102749
IPI:IPI00688727 RefSeq:NP_001020513.1 UniGene:Bt.58932
ProteinModelPortal:Q56JX8 SMR:Q56JX8 STRING:Q56JX8 PRIDE:Q56JX8
Ensembl:ENSBTAT00000055693 GeneID:535668 KEGG:bta:535668 CTD:6207
GeneTree:ENSGT00390000017491 HOVERGEN:HBG000938 InParanoid:Q56JX8
OrthoDB:EOG4RJG2T NextBio:20876805 Uniprot:Q56JX8
Length = 151
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/151 (77%), Positives = 137/151 (90%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK + LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>UNIPROTKB|P62277 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0006412 "translation" evidence=IC;TAS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0033119
"negative regulation of RNA splicing" evidence=IDA] [GO:0005840
"ribosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 Reactome:REACT_116125 EMBL:CH471064 GO:GO:0005730
GO:GO:0000184 GO:GO:0006413 GO:GO:0003729 GO:GO:0003735
GO:GO:0033119 GO:GO:0006415 GO:GO:0006414 GO:GO:0022627
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0019083 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR CTD:6207 HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T
ChiTaRS:RPS13 EMBL:L01124 EMBL:X79239 EMBL:D88010 EMBL:AK312060
EMBL:BC000475 EMBL:BC006772 EMBL:BC029732 EMBL:BC066322
EMBL:BC100032 EMBL:L05090 IPI:IPI00221089 PIR:S34109
RefSeq:NP_001008.1 UniGene:Hs.446588 ProteinModelPortal:P62277
SMR:P62277 IntAct:P62277 MINT:MINT-4999984 STRING:P62277
PhosphoSite:P62277 DMDM:50403608 PaxDb:P62277 PeptideAtlas:P62277
PRIDE:P62277 DNASU:6207 Ensembl:ENST00000525634 GeneID:6207
KEGG:hsa:6207 UCSC:uc001mmp.3 GeneCards:GC11M017055 HGNC:HGNC:10386
HPA:HPA005985 MIM:180476 neXtProt:NX_P62277 PharmGKB:PA34785
InParanoid:P62277 PhylomeDB:P62277 GenomeRNAi:6207 NextBio:24107
ArrayExpress:P62277 Bgee:P62277 CleanEx:HS_RPS13
Genevestigator:P62277 GermOnline:ENSG00000110700 Uniprot:P62277
Length = 151
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/151 (77%), Positives = 137/151 (90%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK + LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>RGD|621027 [details] [associations]
symbol:Rps13 "ribosomal protein S13" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006412
"translation" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO;IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=ISO] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 RGD:621027 GO:GO:0005730 GO:GO:0006412
GO:GO:0003729 GO:GO:0003735 GO:GO:0033119 GO:GO:0022627 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR CTD:6207 GeneTree:ENSGT00390000017491
HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T EMBL:X53378 EMBL:BC084724
EMBL:L01123 IPI:IPI00366014 PIR:A35889 RefSeq:NP_569116.1
RefSeq:XP_001053043.1 RefSeq:XP_003753737.1 UniGene:Rn.103229
UniGene:Rn.198625 ProteinModelPortal:P62278 SMR:P62278
IntAct:P62278 STRING:P62278 PhosphoSite:P62278 PRIDE:P62278
Ensembl:ENSRNOT00000027803 Ensembl:ENSRNOT00000034694 GeneID:161477
GeneID:684988 KEGG:rno:161477 KEGG:rno:684988 UCSC:RGD:621027
InParanoid:P62278 NextBio:620983 Genevestigator:P62278
GermOnline:ENSRNOG00000020502 GermOnline:ENSRNOG00000028021
Uniprot:P62278
Length = 151
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 117/151 (77%), Positives = 137/151 (90%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK + LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ZFIN|ZDB-GENE-040625-52 [details] [associations]
symbol:rps13 "ribosomal protein S13" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 ZFIN:ZDB-GENE-040625-52 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 KO:K02953 InterPro:IPR009068
SUPFAM:SSF47060 eggNOG:COG0184 HOGENOM:HOG000180723
HAMAP:MF_01343_A InterPro:IPR023029 OMA:MARMHAR CTD:6207
GeneTree:ENSGT00390000017491 HOVERGEN:HBG000938 OrthoDB:EOG4RJG2T
EMBL:BX927397 EMBL:BC072552 IPI:IPI00494738 RefSeq:NP_001002079.1
UniGene:Dr.31075 SMR:Q6IMW6 STRING:Q6IMW6
Ensembl:ENSDART00000052730 GeneID:415169 KEGG:dre:415169
InParanoid:Q6IMW6 NextBio:20818841 Uniprot:Q6IMW6
Length = 151
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 117/151 (77%), Positives = 136/151 (90%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLILVES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK + L P WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKTRRVLAPNWKYESSTASALVA 151
>UNIPROTKB|F6Q5P0 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9823 "Sus
scrofa" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412
GO:GO:0003729 GO:GO:0003735 GO:GO:0033119 GO:GO:0022627
InterPro:IPR009068 SUPFAM:SSF47060 OMA:MARMHAR
GeneTree:ENSGT00390000017491 EMBL:CU657921
Ensembl:ENSSSCT00000014615 ArrayExpress:F6Q5P0 Uniprot:F6Q5P0
Length = 153
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 117/153 (76%), Positives = 137/153 (89%)
Query: 1 MGRMHSRGKGISASALPYKRTPPS--WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58
MGRMH+ GKG+S SALPY+R+ P+ WLK++S DV++ I K AKKGLTPSQIGVILRDSH
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTKQWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSH 60
Query: 59 GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILV 118
G+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+
Sbjct: 61 GVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILI 120
Query: 119 ESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
ESRIHRLARYYK + LPP WKYES+TAS LVA
Sbjct: 121 ESRIHRLARYYKTKRVLPPNWKYESSTASALVA 153
>UNIPROTKB|E1BGR6 [details] [associations]
symbol:E1BGR6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009068 SUPFAM:SSF47060
HAMAP:MF_01343_A InterPro:IPR023029 GeneTree:ENSGT00390000017491
EMBL:DAAA02035416 IPI:IPI00688404 Ensembl:ENSBTAT00000005143
OMA:WASSETH NextBio:20926527 Uniprot:E1BGR6
Length = 151
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 114/150 (76%), Positives = 134/150 (89%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GK +S SALPY+R+ P+WLK++ DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKDLSQSALPYRRSVPTWLKLTCDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLV 150
RIHRLARYYK + LPP WKYES+TAS LV
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALV 150
>FB|FBgn0010265 [details] [associations]
symbol:RpS13 "Ribosomal protein S13" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;NAS] [GO:0006412 "translation"
evidence=ISS;NAS] [GO:0005840 "ribosome" evidence=IDA;NAS]
[GO:0005811 "lipid particle" evidence=IDA] [GO:0000022 "mitotic
spindle elongation" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 EMBL:AE014134
GO:GO:0005811 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000022 KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060
eggNOG:COG0184 HAMAP:MF_01343_A InterPro:IPR023029 OMA:MARMHAR
CTD:6207 GeneTree:ENSGT00390000017491 EMBL:Z19052 EMBL:X91853
EMBL:X91854 EMBL:AY058536 PIR:S70391 RefSeq:NP_001033885.1
RefSeq:NP_476938.1 UniGene:Dm.3535 ProteinModelPortal:Q03334
SMR:Q03334 DIP:DIP-17858N IntAct:Q03334 MINT:MINT-1001577
STRING:Q03334 PaxDb:Q03334 PRIDE:Q03334 EnsemblMetazoa:FBtr0079724
EnsemblMetazoa:FBtr0100541 GeneID:34149 KEGG:dme:Dmel_CG13389
FlyBase:FBgn0010265 InParanoid:Q03334 OrthoDB:EOG4N02X8
PhylomeDB:Q03334 ChiTaRS:RPS13 GenomeRNAi:34149 NextBio:787111
Bgee:Q03334 GermOnline:CG13389 Uniprot:Q03334
Length = 151
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 115/151 (76%), Positives = 132/151 (87%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKGIS SALPY+RT PSWLK+++ DV++ I K KKGLTPS+IG+ILRDSHG+
Sbjct: 1 MGRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVES
Sbjct: 61 AQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKTKSVLPPNWKYESSTASALVA 151
>POMBASE|SPAC6F6.07c [details] [associations]
symbol:rps13 "40S ribosomal protein S13" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISO]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 PomBase:SPAC6F6.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0022627
KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR EMBL:X67030 PIR:S26296 RefSeq:NP_593900.1
ProteinModelPortal:P28189 SMR:P28189 IntAct:P28189
MINT:MINT-4688056 STRING:P28189 PRIDE:P28189
EnsemblFungi:SPAC6F6.07c.1 GeneID:2542108 KEGG:spo:SPAC6F6.07c
OrthoDB:EOG4QZBWD NextBio:20803180 Uniprot:P28189
Length = 151
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 112/151 (74%), Positives = 132/151 (87%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHS+GKGI++SALPY R+PP+W K + V + I KF+KKG++PSQIGV LRDSHGI
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
QV+ +TG KI+RILKA+GLAPE+PEDLY+LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYY+K LPP WKYES TAS LVA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALVA 151
>SGD|S000002471 [details] [associations]
symbol:RPS13 "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0070181 "SSU rRNA
binding" evidence=IDA] [GO:0000462 "maturation of SSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0002181 "cytoplasmic translation" evidence=IC]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362 SGD:S000002471
EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 EMBL:X84162 EMBL:Z49209
GO:GO:0030686 GO:GO:0070181 GO:GO:0000462 RefSeq:NP_010353.3
GeneID:851640 KEGG:sce:YDR068W PDB:1S1H PDBsum:1S1H GO:GO:0022627
PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G PDBsum:3IZB
PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G RefSeq:NP_010349.3
GeneID:851636 KEGG:sce:YDR064W KO:K02953 InterPro:IPR009068
SUPFAM:SSF47060 PDB:1K5X PDBsum:1K5X eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A InterPro:IPR023029
OMA:MARMHAR GeneTree:ENSGT00390000017491 OrthoDB:EOG4QZBWD
EMBL:Z74360 PIR:S54048 ProteinModelPortal:P05756 SMR:P05756
IntAct:P05756 MINT:MINT-1324638 STRING:P05756 PaxDb:P05756
PeptideAtlas:P05756 PRIDE:P05756 EnsemblFungi:YDR064W
EvolutionaryTrace:P05756 NextBio:969194 Genevestigator:P05756
GermOnline:YDR064W Uniprot:P05756
Length = 151
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 108/150 (72%), Positives = 131/150 (87%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHS GKGIS+SA+PY R P+W K+SS+ V + I K+A+KGLTPSQIGV+LRD+HG+
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Q + +TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLV 150
RIHRLARYY+ LPP WKYES TAS LV
Sbjct: 121 RIHRLARYYRTVAVLPPNWKYESATASALV 150
>WB|WBGene00004482 [details] [associations]
symbol:rps-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR000589
InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069 PROSITE:PS00362
GO:GO:0009792 GO:GO:0040007 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 KO:K02953
EMBL:FO080367 InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A OMA:MARMHAR
GeneTree:ENSGT00390000017491 PIR:H88480 RefSeq:NP_498393.1
ProteinModelPortal:P51404 SMR:P51404 DIP:DIP-25602N IntAct:P51404
MINT:MINT-1063512 STRING:P51404 PaxDb:P51404
EnsemblMetazoa:C16A3.9.1 EnsemblMetazoa:C16A3.9.2 GeneID:175901
KEGG:cel:CELE_C16A3.9 UCSC:C16A3.9.1 CTD:175901 WormBase:C16A3.9
InParanoid:P51404 NextBio:890222 Uniprot:P51404
Length = 151
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 106/151 (70%), Positives = 133/151 (88%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG++ SA+PY+R+ PSW K+++++V+D I K AKKGL PSQIGVILRDSHG+
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
QV+ + G+KI RILK+ G+APE+PEDLYHL+KKAVAIRKHLER+RKD DSK+RLILVES
Sbjct: 61 GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK ++LPP WKYES TA++LV+
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTAASLVS 151
>GENEDB_PFALCIPARUM|PF13_0316 [details] [associations]
symbol:PF13_0316 "40S ribosomal protein S13"
species:5833 "Plasmodium falciparum" [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISS] InterPro:IPR000589
InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL844509 KO:K02953
InterPro:IPR009068 SUPFAM:SSF47060 HOGENOM:HOG000180723
HAMAP:MF_01343_A InterPro:IPR023029 OMA:MARMHAR
ProtClustDB:PTZ00072 RefSeq:XP_001350306.1
ProteinModelPortal:Q8IDB0 SMR:Q8IDB0 PRIDE:Q8IDB0
EnsemblProtists:PF13_0316:mRNA GeneID:814278 KEGG:pfa:PF13_0316
EuPathDB:PlasmoDB:PF3D7_1358800 Uniprot:Q8IDB0
Length = 151
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 104/151 (68%), Positives = 125/151 (82%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRM+ +GKGIS+S LPYKR PSWLK ++ED I K AKKG TPSQIG LRD++GI
Sbjct: 1 MGRMYGKGKGISSSTLPYKRKQPSWLKQKPSEIEDAIIKLAKKGQTPSQIGATLRDNYGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
QVKSVTG+KILRIL+A G+A IPEDLY LIKKAV++RKHLE+N+KDKD KFRLIL ES
Sbjct: 61 PQVKSVTGNKILRILRAQGIATTIPEDLYFLIKKAVSMRKHLEKNKKDKDCKFRLILTES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
+IHR++RYYK+ K LP WKY+S+TAS L+A
Sbjct: 121 KIHRISRYYKRKKLLPSNWKYQSSTASALIA 151
>UNIPROTKB|F1NGB4 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412 GO:GO:0003729
GO:GO:0003735 GO:GO:0033119 GO:GO:0022627 InterPro:IPR009068
SUPFAM:SSF47060 GeneTree:ENSGT00390000017491 EMBL:AADN02030436
EMBL:AADN02030437 EMBL:AADN02030438 IPI:IPI00577443
Ensembl:ENSGALT00000017164 Ensembl:ENSGALT00000039567
Uniprot:F1NGB4
Length = 127
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 101/127 (79%), Positives = 116/127 (91%)
Query: 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84
WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++
Sbjct: 1 WLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDL 60
Query: 85 PEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 144
PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP WKYES+
Sbjct: 61 PEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESS 120
Query: 145 TASTLVA 151
TAS LVA
Sbjct: 121 TASALVA 127
>DICTYBASE|DDB_G0284533 [details] [associations]
symbol:rps13 "40S ribosomal protein S13"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312 Pfam:PF08069
PROSITE:PS00362 dictyBase:DDB_G0284533 GenomeReviews:CM000153_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000066
KO:K02953 InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HAMAP:MF_01343_A OMA:MARMHAR RefSeq:XP_638554.1
ProteinModelPortal:Q54PH8 SMR:Q54PH8 STRING:Q54PH8
EnsemblProtists:DDB0230055 GeneID:8624647 KEGG:ddi:DDB_G0284533
ProtClustDB:PTZ00072 Uniprot:Q54PH8
Length = 151
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 104/151 (68%), Positives = 118/151 (78%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG LRDS G+
Sbjct: 1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVES
Sbjct: 61 AQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRL R Y+K L P WKYES ASTLVA
Sbjct: 121 RIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151
>UNIPROTKB|J3KMX5 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000589 InterPro:IPR012606
Pfam:PF00312 Pfam:PF08069 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009068 SUPFAM:SSF47060 EMBL:AC116533 ChiTaRS:RPS13
HGNC:HGNC:10386 ProteinModelPortal:J3KMX5 Ensembl:ENST00000228140
Uniprot:J3KMX5
Length = 148
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 82/107 (76%), Positives = 98/107 (91%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 107
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
>UNIPROTKB|P62279 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9823 "Sus
scrofa" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000589 InterPro:IPR012606 Pfam:PF00312
Pfam:PF08069 PROSITE:PS00362 GO:GO:0005730 GO:GO:0006412
GO:GO:0003729 GO:GO:0003735 GO:GO:0033119 GO:GO:0022627
InterPro:IPR009068 SUPFAM:SSF47060 eggNOG:COG0184
HOGENOM:HOG000180723 HAMAP:MF_01343_A HOVERGEN:HBG000938
OrthoDB:EOG4RJG2T EMBL:F14525 ProteinModelPortal:P62279 SMR:P62279
STRING:P62279 ArrayExpress:P62279 Uniprot:P62279
Length = 107
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 82/107 (76%), Positives = 98/107 (91%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 107
AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
>UNIPROTKB|I3L7A9 [details] [associations]
symbol:I3L7A9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR012606 Pfam:PF08069
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GeneTree:ENSGT00390000017491 EMBL:CU481337
Ensembl:ENSSSCT00000029071 OMA:PIESRIH Uniprot:I3L7A9
Length = 107
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 68/104 (65%), Positives = 85/104 (81%)
Query: 8 GKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT 67
GKG+S SALPY+ + P+WLK+ S DV++ I K AKK LTPSQ+G+ILRDSHG+AQV VT
Sbjct: 4 GKGLSQSALPYRHSVPTWLKLMSGDVKEQIYKLAKKDLTPSQMGMILRDSHGVAQVGFVT 63
Query: 68 GSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDS 111
G KILRILK+ GLAP++PEDL+HL KK +K+LERNRK KD+
Sbjct: 64 GKKILRILKSQGLAPDLPEDLHHLKKKKERKKKYLERNRKAKDA 107
>UNIPROTKB|E9PS50 [details] [associations]
symbol:RPS13 "40S ribosomal protein S13" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR012606 Pfam:PF08069
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC116533
ChiTaRS:RPS13 HGNC:HGNC:10386 IPI:IPI00980940
ProteinModelPortal:E9PS50 SMR:E9PS50 Ensembl:ENST00000533969
ArrayExpress:E9PS50 Bgee:E9PS50 Uniprot:E9PS50
Length = 116
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDS 57
MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQI ++L S
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIVLLLSPS 57
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/34 (79%), Positives = 32/34 (94%)
Query: 48 SQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81
S+IGVILRDSHG+AQV+ VTG+KILRILK+ GLA
Sbjct: 83 SRIGVILRDSHGVAQVRFVTGNKILRILKSKGLA 116
>UNIPROTKB|F1LXY1 [details] [associations]
symbol:F1LXY1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR012606
Pfam:PF08069 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
IPI:IPI00947710 Ensembl:ENSRNOT00000066599 Uniprot:F1LXY1
Length = 72
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
+G H+ KG+ ALPY + P+WL++ S+D+++ I K AKKGLTPSQIG ILRDSHG+
Sbjct: 1 VGCTHAPRKGLFRLALPYCHSMPTWLRLMSEDLKEQIYKLAKKGLTPSQIGEILRDSHGV 60
Query: 61 AQV 63
QV
Sbjct: 61 TQV 63
>RGD|1309022 [details] [associations]
symbol:Bco2 "beta-carotene oxygenase 2" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=ISO] [GO:0016116
"carotenoid metabolic process" evidence=ISO] [GO:0016119 "carotene
metabolic process" evidence=ISO] [GO:0016121 "carotene catabolic
process" evidence=ISO] [GO:0016702 "oxidoreductase activity, acting
on single donors with incorporation of molecular oxygen,
incorporation of two atoms of oxygen" evidence=ISO] [GO:0051881
"regulation of mitochondrial membrane potential" evidence=ISO]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:2000377
"regulation of reactive oxygen species metabolic process"
evidence=ISO] InterPro:IPR012606 Pfam:PF08069 RGD:1309022
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 HOVERGEN:HBG050679
InterPro:IPR004294 PANTHER:PTHR10543 Pfam:PF03055 IPI:IPI00382241
EMBL:AY325176 UniGene:Rn.162999 ProteinModelPortal:Q7TP70
PRIDE:Q7TP70 UCSC:RGD:1309022 Genevestigator:Q7TP70 Uniprot:Q7TP70
Length = 481
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVE 34
+GRMH+ GKG+S SALPY+R+ WLK+ S DV+
Sbjct: 444 VGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>RGD|1597300 [details] [associations]
symbol:Tex12 "testis expressed 12" species:10116 "Rattus
norvegicus" [GO:0000795 "synaptonemal complex" evidence=ISO]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR012606 Pfam:PF08069 RGD:1597300
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GeneTree:ENSGT00500000044783 InterPro:IPR004294 PANTHER:PTHR10543
Pfam:PF03055 IPI:IPI00382241 Ensembl:ENSRNOT00000059191
UCSC:RGD:1597300 ArrayExpress:F1LMB4 Uniprot:F1LMB4
Length = 481
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVE 34
+GRMH+ GKG+S SALPY+R+ WLK+ S DV+
Sbjct: 444 VGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 151 151 0.00097 104 3 11 22 0.48 31
30 0.40 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 555 (59 KB)
Total size of DFA: 133 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.94u 0.10s 17.04t Elapsed: 00:00:01
Total cpu time: 16.94u 0.10s 17.04t Elapsed: 00:00:01
Start: Fri May 10 04:48:16 2013 End: Fri May 10 04:48:17 2013