BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031857
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 151
Score = 266 bits (681), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/151 (86%), Positives = 139/151 (92%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHSRGKGIS+SA+PYKRTPPSW+K ++ DVE+ I K AKKG PSQIGV+LRD HGI
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
>pdb|3IZB|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 151
Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 108/150 (72%), Positives = 131/150 (87%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
MGRMHS GKGIS+SA+PY R P+W K+SS+ V + I K+A+KGLTPSQIGV+LRD+HG+
Sbjct: 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Q + +TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 TQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLV 150
RIHRLARYY+ LPP WKYES TAS LV
Sbjct: 121 RIHRLARYYRTVAVLPPNWKYESATASALV 150
>pdb|3ZEY|G Chain G, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 151
Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 130/151 (86%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
M RMH G G +ASALPY+RTPP+WLK SS+DV D +CK AKKGL+PS+IG+ LRDS GI
Sbjct: 1 MVRMHGNGHGKAASALPYRRTPPTWLKSSSRDVIDAVCKLAKKGLSPSRIGMQLRDSMGI 60
Query: 61 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
AQVK+VTG KILRILK G+APEIPEDLY LIK+A +RKHLERN KDKD+KFRLILVES
Sbjct: 61 AQVKNVTGRKILRILKHKGMAPEIPEDLYCLIKRATQMRKHLERNTKDKDTKFRLILVES 120
Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
RIHRLARYY++ K+LPP WKYES+TAS +VA
Sbjct: 121 RIHRLARYYRRVKQLPPTWKYESSTASAMVA 151
>pdb|2XZM|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|O Chain O, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 153
Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 122/152 (80%), Gaps = 2/152 (1%)
Query: 1 MGRMH--SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58
MGRM +GKGIS SALP+KR P WL ++ V D K AKKGLTPSQIGVILRD H
Sbjct: 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQH 60
Query: 59 GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILV 118
GI QV+ +TG KILRILK +G AP++PEDLY LIKKA++IRKHLE+NRKDKDSK+RLILV
Sbjct: 61 GIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILV 120
Query: 119 ESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
ESRIHRL+RYYK +KLPP WKY + TAS LV
Sbjct: 121 ESRIHRLSRYYKLNQKLPPKWKYNAQTASALV 152
>pdb|1YSH|E Chain E, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 84
Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/84 (96%), Positives = 82/84 (97%)
Query: 65 SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR 124
SVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR
Sbjct: 1 SVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR 60
Query: 125 LARYYKKTKKLPPVWKYESTTAST 148
LARYYK+TKKLPP WKYESTTAST
Sbjct: 61 LARYYKRTKKLPPTWKYESTTAST 84
>pdb|3JYV|O Chain O, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 84
Score = 142 bits (358), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 77/84 (91%)
Query: 66 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 125
+TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 126 ARYYKKTKKLPPVWKYESTTASTL 149
ARYY+ LPP WKYES TAS L
Sbjct: 61 ARYYRTVAVLPPNWKYESATASAL 84
>pdb|3J20|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 158
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Query: 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
M RMH+R +G S S P + PP W++ + +++E+ + K K+G + + IG ILRD +GI
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 61 AQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKF 113
VK I RIL+ HGLAPEIPEDL LI++AV +RKHLE++ KD S
Sbjct: 61 PSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMR 120
Query: 114 RLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 150
L L+ES+I RL +YYK+ KLP W+Y+ TA LV
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157
>pdb|1S1H|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 65
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 65/65 (100%)
Query: 66 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRL 125
+TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRL
Sbjct: 1 ITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRL 60
Query: 126 ARYYK 130
ARYY+
Sbjct: 61 ARYYR 65
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 29.3 bits (64), Expect = 0.92, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 41 AKKGLTPSQIG-----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL----YHL 91
A K L P+Q + L D G++ +VT ++IL+ K L PEIP + Y
Sbjct: 22 AAKKLQPAQTAAKNLIIFLGDGMGVS---TVTAARILKGQKKDKLGPEIPLAMDRFPYVA 78
Query: 92 IKKAVAIRKHL 102
+ K + KH+
Sbjct: 79 LSKTYNVDKHV 89
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 29.3 bits (64), Expect = 0.93, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 41 AKKGLTPSQIG-----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL----YHL 91
A K L P+Q + L D G++ +VT ++IL+ K L PEIP + Y
Sbjct: 22 AAKKLQPAQTAAKNLIIFLGDGMGVS---TVTAARILKGQKKDKLGPEIPLAMDRFPYVA 78
Query: 92 IKKAVAIRKHL 102
+ K + KH+
Sbjct: 79 LSKTYNVDKHV 89
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 28.9 bits (63), Expect = 1.0, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 41 AKKGLTPSQIG-----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDL----YHL 91
A K L P+Q + L D G++ +VT ++IL+ K L PEIP + Y
Sbjct: 22 AAKKLQPAQTAAKNLIIFLGDGMGVS---TVTAARILKGQKKDKLGPEIPLAMDRFPYVA 78
Query: 92 IKKAVAIRKHL 102
+ K + KH+
Sbjct: 79 LSKTYNVDKHV 89
>pdb|3BRJ|A Chain A, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|B Chain B, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|C Chain C, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|D Chain D, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
Length = 175
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 48 SQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 107
S +G +L+DS + + S L++L G+ +P+D+YH I+ + ++ HL +
Sbjct: 55 SVVGPLLQDSGPLGDL-----SVRLKLLFGLGV---LPDDIYHDIEDIIKLKNHLNSDAS 106
Query: 108 D 108
D
Sbjct: 107 D 107
>pdb|3T91|A Chain A, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis
pdb|3T91|B Chain B, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis
pdb|3T9Q|A Chain A, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis (Mn Presoaked)
pdb|3T9Q|B Chain B, Structure Of The Phosphatase Domain Of The Cell Fate
Determinant Spoiie From Bacillus Subtilis (Mn Presoaked)
Length = 242
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 24 SWLKISSQDVEDNICKFAKKGLTPSQI 50
S L +S D++D CKF K G TPS I
Sbjct: 93 STLDLSIIDLQDASCKFLKVGSTPSFI 119
>pdb|2E67|A Chain A, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|B Chain B, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|C Chain C, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|D Chain D, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|E Chain E, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|F Chain F, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
Length = 264
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 25 WLKISSQDVEDNI---CKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81
W K +++VE + + A K +P+ + D+H A ++ LR+ +A+ L
Sbjct: 96 WRKARAEEVERELKAQIQAAAKLFSPTHL-----DAHQGAVLRPDLAEVYLRLAEAYRLV 150
Query: 82 PEIPEDL 88
P +PE L
Sbjct: 151 PLVPESL 157
>pdb|1WU2|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
pdb|1WU2|B Chain B, Crystal Structure Of Molybdopterin Biosynthesis Moea
Protein From Pyrococcus Horikoshii Ot3
Length = 396
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 47 PSQIG----VILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPED 87
PSQ+G + + +GIA+V GS IL L A EIPED
Sbjct: 337 PSQLGRYEFIKIYYENGIARVIKKKGSGILSSLLASNAYLEIPED 381
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK---------TKKLPPV 138
L LI AVA HL++ + D+ FR+ + + +H LA Y++ +K+L PV
Sbjct: 312 LLELIGHAVA---HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
Query: 139 WK 140
K
Sbjct: 369 AK 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,227,663
Number of Sequences: 62578
Number of extensions: 151612
Number of successful extensions: 505
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 25
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)