Query 031857
Match_columns 151
No_of_seqs 125 out of 250
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_N S27A, YS15, 40S ribosom 100.0 1.7E-90 5.8E-95 544.7 14.4 151 1-151 1-151 (151)
2 2xzm_O RPS13E; ribosome, trans 100.0 3.5E-90 1.2E-94 543.7 14.3 151 1-151 1-153 (153)
3 3j20_Q 30S ribosomal protein S 100.0 1.4E-76 4.8E-81 468.6 13.3 151 1-151 1-158 (158)
4 4a5u_B 30S ribosomal protein S 98.2 1.3E-06 4.6E-11 63.0 4.3 45 89-133 29-73 (88)
5 3ulw_A 30S ribosomal protein S 98.2 8.5E-07 2.9E-11 64.6 3.1 46 88-133 32-77 (93)
6 1a32_A Ribosomal protein S15; 97.9 4.7E-05 1.6E-09 54.8 8.1 63 71-133 7-73 (88)
7 2vqe_O 30S ribosomal protein S 97.8 4.7E-05 1.6E-09 54.9 6.6 63 71-133 8-74 (89)
8 3r8n_O 30S ribosomal protein S 97.7 3.7E-05 1.3E-09 55.4 4.3 46 88-133 28-73 (88)
9 3bbn_O Ribosomal protein S15; 97.4 3.4E-05 1.1E-09 56.0 1.1 47 87-133 25-71 (90)
10 1ynp_A Oxidoreductase, AKR11C1 80.8 2.6 8.7E-05 34.4 5.4 71 23-95 233-306 (317)
11 1jko_C HIN recombinase, DNA-in 78.3 1.4 4.7E-05 25.2 2.3 46 28-84 6-51 (52)
12 3m66_A Mterf3, mterf domain-co 78.2 1.5 5.1E-05 34.7 3.1 70 21-93 24-98 (270)
13 3bzy_B ESCU; auto cleavage pro 78.1 3.6 0.00012 28.6 4.7 59 21-96 16-75 (83)
14 3c01_E Surface presentation of 77.3 7.8 0.00027 27.8 6.5 68 21-105 16-84 (98)
15 3t7y_A YOP proteins translocat 76.6 3.9 0.00013 29.3 4.7 60 21-97 31-91 (97)
16 2l8n_A Transcriptional repress 76.0 1.5 5E-05 28.9 2.1 44 37-83 12-56 (67)
17 1pul_A Hypothetical protein C3 74.2 3 0.0001 31.4 3.7 46 21-81 12-57 (125)
18 4dfk_A DNA polymerase I, therm 73.9 3.2 0.00011 37.2 4.5 35 30-64 175-212 (540)
19 3r88_A Anthranilate phosphorib 72.8 1.7 5.8E-05 37.4 2.3 50 5-54 6-65 (377)
20 2vt1_B Surface presentation of 72.1 4 0.00014 29.1 3.8 66 21-103 16-82 (93)
21 2jlj_A YSCU, YOP proteins tran 70.2 5.9 0.0002 30.3 4.6 67 21-104 69-136 (144)
22 4fp9_B Mterf domain-containing 69.5 8 0.00027 32.7 5.7 61 29-95 42-102 (335)
23 3hot_A Transposable element ma 65.5 5.3 0.00018 31.6 3.6 37 25-61 3-39 (345)
24 2d8c_A Phosphatidylcholine:cer 65.4 14 0.00048 26.0 5.5 73 10-99 1-81 (97)
25 3bzs_A ESCU; auto cleavage pro 65.2 7.9 0.00027 29.4 4.4 60 21-97 70-130 (137)
26 2dmp_A Zinc fingers and homeob 64.7 15 0.00051 24.9 5.4 51 10-60 1-52 (89)
27 1u78_A TC3 transposase, transp 64.4 12 0.00039 25.6 4.8 45 27-80 60-105 (141)
28 1uxc_A FRUR (1-57), fructose r 61.6 6.6 0.00023 25.5 2.9 42 43-84 10-51 (65)
29 2kd1_A DNA integration/recombi 60.5 6.9 0.00024 25.6 2.9 31 25-55 48-78 (118)
30 2kkp_A Phage integrase; SAM-li 60.5 8 0.00028 25.0 3.2 30 25-54 50-79 (117)
31 2kfn_A Klenow fragment of DNA 60.2 8.7 0.0003 34.3 4.4 56 30-88 240-304 (605)
32 2jli_A YSCU, YOP proteins tran 59.7 11 0.00037 28.2 4.1 58 21-95 60-118 (123)
33 2key_A Putative phage integras 58.8 11 0.00036 24.5 3.6 52 24-86 48-100 (112)
34 3nrw_A Phage integrase/site-sp 57.5 9.5 0.00032 25.6 3.3 53 24-87 50-102 (117)
35 3pv8_A DNA polymerase I; DNA p 56.8 13 0.00044 33.7 4.9 60 30-89 227-291 (592)
36 1tdp_A Carnobacteriocin B2 imm 56.7 6.8 0.00023 29.2 2.6 52 86-137 6-71 (111)
37 4dyq_A Gene 1 protein; GP1, oc 54.1 27 0.00091 25.3 5.5 57 27-100 12-68 (140)
38 3eau_A Voltage-gated potassium 53.0 17 0.00058 29.2 4.6 62 33-96 254-321 (327)
39 2i4r_A V-type ATP synthase sub 52.6 3.4 0.00012 29.5 0.4 28 27-58 35-62 (102)
40 3b1s_B Flagellar biosynthetic 57.5 3 0.0001 29.4 0.0 59 22-97 17-76 (87)
41 3gdw_A Sigma-54 interaction do 52.2 30 0.001 25.4 5.5 74 27-102 41-129 (139)
42 3n2t_A Putative oxidoreductase 51.8 28 0.00094 28.5 5.8 63 33-97 265-330 (348)
43 1tc3_C Protein (TC3 transposas 51.2 12 0.0004 20.6 2.5 26 28-54 6-31 (51)
44 2vz4_A Tipal, HTH-type transcr 49.7 23 0.0008 24.3 4.4 41 16-56 28-70 (108)
45 3v0s_A Perakine reductase; AKR 49.1 19 0.00064 29.3 4.3 62 33-96 244-309 (337)
46 2zze_A Alanyl-tRNA synthetase; 48.7 19 0.00063 34.1 4.7 56 33-94 434-491 (752)
47 1zbm_A Hypothetical protein AF 48.5 4.4 0.00015 30.8 0.4 22 70-91 259-280 (280)
48 2ka4_B P113, signal transducer 48.4 4.1 0.00014 27.2 0.2 11 81-91 7-17 (57)
49 3neh_A Renal dipeptidase famil 48.1 5.6 0.00019 33.6 1.0 45 21-80 269-313 (318)
50 3b0z_B Flagellar biosynthetic 51.9 4.3 0.00015 30.0 0.0 66 22-104 17-83 (114)
51 2cob_A LCOR protein; MLR2, KIA 44.3 30 0.001 23.7 4.1 39 23-65 6-47 (70)
52 3g2b_A Coenzyme PQQ synthesis 43.2 13 0.00045 25.9 2.2 52 28-80 39-92 (95)
53 2kw0_A CCMH protein; oxidoredu 43.0 14 0.00048 26.3 2.3 30 30-59 42-71 (90)
54 3ly0_A Dipeptidase AC. metallo 42.9 20 0.00069 30.9 3.7 43 22-78 312-354 (364)
55 2gsv_A Hypothetical protein YV 42.3 13 0.00043 26.1 1.9 25 96-131 12-36 (80)
56 1lqa_A TAS protein; TIM barrel 42.3 50 0.0017 26.5 5.8 63 32-96 272-338 (346)
57 3n6q_A YGHZ aldo-keto reductas 41.6 62 0.0021 26.2 6.3 65 31-96 264-332 (346)
58 3plo_X DNA-invertase; resolvas 41.3 5.6 0.00019 29.9 0.0 26 29-55 144-169 (193)
59 3eus_A DNA-binding protein; st 41.1 33 0.0011 22.1 3.8 31 44-80 38-68 (86)
60 3v7n_A Threonine synthase; ssg 40.3 16 0.00055 32.5 2.8 70 26-95 385-464 (487)
61 2hl7_A Cytochrome C-type bioge 40.3 16 0.00056 25.5 2.3 30 30-59 45-74 (84)
62 3lfu_A DNA helicase II; SF1 he 40.3 16 0.00055 31.4 2.7 27 31-57 331-357 (647)
63 2xvc_A ESCRT-III, SSO0910; cel 39.7 19 0.00066 24.1 2.4 20 26-45 35-54 (59)
64 1pyf_A IOLS protein; beta-alph 39.2 41 0.0014 26.8 4.8 60 34-95 245-308 (312)
65 2cpg_A REPA protein, transcrip 38.7 15 0.00051 21.2 1.6 22 30-51 10-32 (45)
66 2v7f_A RPS19, RPS19E SSU ribos 38.0 28 0.00095 26.3 3.4 60 20-82 26-112 (150)
67 2ahq_A Sigma-54, RNA polymeras 37.6 33 0.0011 23.5 3.4 49 27-80 15-68 (76)
68 1gve_A Aflatoxin B1 aldehyde r 37.2 75 0.0025 25.4 6.1 65 33-97 240-316 (327)
69 1r8d_A Transcription activator 36.5 43 0.0015 22.9 4.0 41 16-56 29-71 (109)
70 3lut_A Voltage-gated potassium 35.9 27 0.00093 28.7 3.3 62 33-96 288-355 (367)
71 3id7_A Dipeptidase; streptomyc 35.8 34 0.0012 29.7 4.1 44 21-78 326-369 (400)
72 1pdo_A Mannose permease; phosp 35.4 34 0.0012 24.4 3.4 70 25-97 36-119 (135)
73 3m66_A Mterf3, mterf domain-co 35.2 67 0.0023 25.0 5.4 34 22-55 65-98 (270)
74 2hue_C Histone H4; mini beta s 35.1 37 0.0013 23.0 3.4 35 53-94 3-38 (84)
75 1u78_A TC3 transposase, transp 35.0 98 0.0033 20.8 5.6 26 28-54 7-32 (141)
76 1wdd_S Ribulose bisphosphate c 34.3 22 0.00076 26.8 2.4 22 27-48 20-41 (128)
77 4fp9_B Mterf domain-containing 34.0 61 0.0021 27.2 5.3 64 29-95 74-137 (335)
78 1rbl_M Ribulose 1,5 bisphospha 33.5 21 0.00071 26.2 2.0 22 27-48 19-40 (109)
79 1taf_B TFIID TBP associated fa 33.5 69 0.0024 21.5 4.5 34 69-103 10-55 (70)
80 1svd_M Ribulose bisphosphate c 33.4 24 0.00083 25.9 2.4 22 27-48 21-42 (110)
81 1q06_A Transcriptional regulat 32.9 33 0.0011 24.7 3.1 40 17-56 28-69 (135)
82 1uaa_A REP helicase, protein ( 32.6 60 0.002 28.5 5.2 45 32-84 326-371 (673)
83 3erp_A Putative oxidoreductase 32.5 49 0.0017 27.1 4.3 64 32-96 282-349 (353)
84 2r0q_C Putative transposon TN5 32.5 44 0.0015 25.1 3.8 40 32-81 163-202 (209)
85 1yfs_A Alanyl-tRNA synthetase; 32.4 59 0.002 29.3 5.1 55 33-94 364-420 (465)
86 1vz0_A PARB, chromosome partit 32.3 78 0.0027 24.8 5.4 21 70-94 150-170 (230)
87 1ur3_M Hypothetical oxidoreduc 31.8 89 0.0031 25.2 5.8 64 31-96 245-313 (319)
88 3kjx_A Transcriptional regulat 31.2 33 0.0011 26.7 2.9 37 43-82 20-56 (344)
89 3fia_A Intersectin-1; EH 1 dom 31.2 1.5E+02 0.0051 21.5 7.2 75 1-95 1-75 (121)
90 3zxw_B Ribulose bisphosphate c 30.9 24 0.00083 26.2 2.0 22 27-48 18-39 (118)
91 2oxo_A Integrase; DNA-binding 30.7 46 0.0016 20.1 3.1 49 26-86 44-92 (103)
92 1gk8_I Ribulose bisphosphate c 30.5 28 0.00095 26.7 2.4 22 27-48 20-41 (140)
93 1pdn_C Protein (PRD paired); p 30.4 33 0.0011 22.5 2.5 26 28-54 18-43 (128)
94 1xo0_A Recombinase CRE; CRE re 30.3 47 0.0016 24.8 3.6 31 24-54 43-73 (324)
95 2x48_A CAG38821; archeal virus 30.1 46 0.0016 19.4 2.9 24 30-54 18-41 (55)
96 2pju_A Propionate catabolism o 29.8 71 0.0024 25.3 4.7 60 28-104 138-200 (225)
97 2jpc_A SSRB; DNA binding prote 29.7 34 0.0012 20.2 2.3 21 34-54 3-23 (61)
98 2ztg_A Alanyl-tRNA synthetase; 29.4 62 0.0021 30.5 4.9 43 46-94 440-482 (739)
99 3rgc_A Possible periplasmic pr 29.3 1E+02 0.0035 23.5 5.5 55 67-132 71-126 (252)
100 2nsa_A Trigger factor, TF; cha 29.3 31 0.0011 25.1 2.4 25 26-50 107-132 (170)
101 2jml_A DNA binding domain/tran 29.2 31 0.001 22.5 2.1 33 25-57 42-77 (81)
102 2rin_A Putative glycine betain 28.8 60 0.0021 25.8 4.2 50 28-77 232-287 (298)
103 2a6c_A Helix-turn-helix motif; 28.7 65 0.0022 20.4 3.7 31 24-54 10-41 (83)
104 3aon_B V-type sodium ATPase su 28.6 13 0.00043 27.0 0.1 59 27-98 27-100 (115)
105 2odi_A R.BCNI; endonuclease-DN 28.1 44 0.0015 27.4 3.3 34 28-61 4-47 (238)
106 3bed_A PTS system, IIA compone 27.9 77 0.0026 22.8 4.3 67 27-98 42-121 (142)
107 1ta9_A Glycerol dehydrogenase; 27.9 89 0.003 26.9 5.4 75 70-146 357-441 (450)
108 3ulq_B Transcriptional regulat 27.7 34 0.0012 22.9 2.2 53 21-81 23-75 (90)
109 2kj8_A Putative prophage CPS-5 27.1 52 0.0018 21.5 3.0 49 26-86 48-96 (118)
110 2elc_A Trp D, anthranilate pho 27.0 42 0.0014 28.0 3.1 29 27-55 12-40 (329)
111 1bwv_S Rubisco, protein (ribul 26.9 35 0.0012 26.0 2.4 22 27-48 13-34 (138)
112 3mva_O Transcription terminati 26.3 54 0.0018 26.8 3.6 69 21-95 74-147 (343)
113 3in6_A FMN-binding protein; st 26.1 11 0.00036 29.0 -0.7 42 24-67 9-50 (148)
114 3b7h_A Prophage LP1 protein 11 25.9 77 0.0026 19.1 3.5 23 31-53 6-29 (78)
115 1j93_A UROD, uroporphyrinogen 25.8 65 0.0022 26.0 3.9 34 24-61 299-333 (353)
116 1u69_A Hypothetical protein; s 25.8 29 0.001 26.2 1.7 34 29-63 86-119 (163)
117 2qai_A V-type ATP synthase sub 25.7 19 0.00064 26.0 0.6 55 31-98 34-99 (111)
118 2q5c_A NTRC family transcripti 25.6 94 0.0032 23.6 4.6 40 29-68 127-169 (196)
119 3bd1_A CRO protein; transcript 25.4 1.1E+02 0.0037 18.9 4.3 34 39-79 16-50 (79)
120 1m5y_A SurviVal protein, survi 25.4 2E+02 0.0068 23.2 6.8 31 67-100 90-120 (408)
121 1o17_A Anthranilate PRT, anthr 25.3 47 0.0016 28.0 3.1 29 27-55 15-43 (345)
122 1s4d_A Uroporphyrin-III C-meth 25.3 48 0.0016 26.4 3.0 26 21-46 69-94 (280)
123 3cz6_A DNA-binding protein RAP 25.3 54 0.0019 25.9 3.2 41 22-62 34-78 (168)
124 3mva_O Transcription terminati 25.3 39 0.0013 27.6 2.5 49 32-80 122-170 (343)
125 2k4b_A Transcriptional regulat 25.1 31 0.0011 23.9 1.7 46 32-82 39-84 (99)
126 3hh1_A Tetrapyrrole methylase 25.1 72 0.0025 22.0 3.6 48 29-82 64-111 (117)
127 4hkm_A Anthranilate phosphorib 24.9 48 0.0017 27.7 3.1 29 27-55 18-46 (346)
128 1itu_A Renal dipeptidase; glyc 24.8 73 0.0025 27.2 4.2 42 22-77 295-336 (369)
129 3uj3_X DNA-invertase; helix-tu 24.8 15 0.00053 27.3 0.0 41 29-80 144-184 (193)
130 3ff5_A PEX14P, peroxisomal bio 24.7 51 0.0017 21.4 2.5 24 33-56 30-53 (54)
131 2kj5_A Phage integrase; GFT PS 24.7 56 0.0019 20.9 2.8 28 26-54 49-76 (116)
132 4g8t_A Glucarate dehydratase; 24.7 50 0.0017 28.5 3.2 33 115-147 418-461 (464)
133 2pjw_V Vacuolar protein sortin 24.6 1.6E+02 0.0053 20.8 5.3 48 84-131 31-79 (91)
134 2hsg_A Glucose-resistance amyl 24.6 49 0.0017 25.5 2.9 37 43-82 12-48 (332)
135 1vqu_A Anthranilate phosphorib 24.6 49 0.0017 28.2 3.1 29 27-55 39-67 (374)
136 2kvc_A Putative uncharacterize 24.6 61 0.0021 23.6 3.2 30 27-56 38-68 (103)
137 3tl4_X Glutaminyl-tRNA synthet 24.3 54 0.0018 25.8 3.1 49 26-76 115-171 (187)
138 2kiw_A INT protein; alpha, str 24.3 65 0.0022 20.4 3.0 28 26-54 42-69 (111)
139 1p6r_A Penicillinase repressor 24.2 26 0.0009 22.3 1.1 38 42-82 21-58 (82)
140 4f0h_B Ribulose bisphosphate c 24.1 43 0.0015 25.6 2.4 22 27-48 13-34 (138)
141 2k9i_A Plasmid PRN1, complete 24.1 37 0.0013 20.0 1.7 22 30-51 17-39 (55)
142 2oyy_A Hexameric cytochrome; a 24.0 25 0.00085 24.6 0.9 37 23-59 7-47 (76)
143 3ov9_A Nucleoprotein; orthogon 23.9 1.6E+02 0.0055 24.5 6.0 83 28-138 16-99 (245)
144 1k78_A Paired box protein PAX5 23.7 1.8E+02 0.0063 20.0 6.6 49 27-80 90-144 (149)
145 2bp1_A Aflatoxin B1 aldehyde r 23.6 1.2E+02 0.0042 24.8 5.3 64 33-97 273-349 (360)
146 1h3o_A Transcription initiatio 23.6 65 0.0022 22.2 3.0 30 67-97 8-37 (75)
147 2e5z_A SFRS8 protein, splicing 23.6 65 0.0022 22.7 3.1 21 21-41 12-32 (90)
148 4a8e_A XER A, probable tyrosin 23.5 61 0.0021 23.9 3.1 30 25-54 44-73 (292)
149 2gpe_A Bifunctional protein PU 23.5 44 0.0015 19.9 1.9 21 30-50 11-32 (52)
150 3k3w_A Penicillin G acylase; h 23.5 15 0.00052 29.0 -0.3 16 52-67 6-21 (196)
151 1bxn_I Rubisco, protein (ribul 23.4 39 0.0013 25.8 2.0 22 27-48 13-34 (139)
152 2czl_A Hypothetical protein TT 23.3 12 0.0004 28.3 -1.0 20 70-89 252-271 (272)
153 2ctd_A Zinc finger protein 512 23.3 1.1E+02 0.0036 20.1 4.0 28 10-37 1-28 (96)
154 1khd_A Anthranilate phosphorib 23.2 50 0.0017 27.8 2.9 29 27-55 25-53 (345)
155 2dkl_A Trinucleotide repeat co 22.8 1.4E+02 0.005 20.4 4.7 43 10-58 1-46 (85)
156 1fm2_A Glutaryl 7-aminocephalo 22.3 16 0.00054 28.3 -0.4 16 52-67 19-34 (169)
157 3d1n_I POU domain, class 6, tr 22.2 68 0.0023 23.4 3.1 32 29-60 2-37 (151)
158 1vg5_A RSGI RUH-014, rhomboid 22.1 77 0.0026 21.4 3.1 32 28-59 24-55 (73)
159 3gpv_A Transcriptional regulat 22.1 53 0.0018 24.0 2.5 39 17-55 44-84 (148)
160 1rr7_A Middle operon regulator 22.0 96 0.0033 22.5 3.9 86 35-131 30-118 (129)
161 2w84_A Peroxisomal membrane pr 21.6 60 0.0021 22.2 2.5 25 33-57 35-59 (70)
162 2lky_A Uncharacterized protein 21.5 71 0.0024 23.6 3.1 28 27-54 40-68 (112)
163 1y7y_A C.AHDI; helix-turn-heli 21.4 99 0.0034 18.3 3.3 23 32-54 13-36 (74)
164 2fu4_A Ferric uptake regulatio 21.2 95 0.0032 19.5 3.3 40 43-84 32-71 (83)
165 3l91_A Acyl-homoserine lactone 21.1 13 0.00045 28.7 -1.1 53 83-139 73-125 (170)
166 1cp9_A Penicillin amidohydrola 21.1 18 0.00062 28.6 -0.3 16 52-67 6-21 (205)
167 3kz3_A Repressor protein CI; f 21.1 1.6E+02 0.0053 18.2 4.4 14 44-57 36-49 (80)
168 2kkv_A Integrase; protein stru 21.0 54 0.0018 21.4 2.1 28 25-53 48-75 (121)
169 1bgx_T TAQ DNA polymerase; DNA 20.9 25 0.00086 33.1 0.6 35 31-65 468-505 (832)
170 3gty_X Trigger factor, TF; cha 20.7 25 0.00085 30.3 0.5 53 26-78 349-404 (433)
171 2ay0_A Bifunctional PUTA prote 20.7 54 0.0018 20.7 2.0 21 30-50 11-32 (58)
172 2khq_A Integrase; all-alpha, s 20.6 64 0.0022 20.3 2.4 29 25-54 44-72 (110)
173 2dsj_A Pyrimidine-nucleoside ( 20.6 64 0.0022 28.3 3.1 28 27-54 15-42 (423)
174 3h5t_A Transcriptional regulat 20.5 53 0.0018 25.7 2.3 44 37-83 12-57 (366)
175 1sfu_A 34L protein; protein/Z- 20.5 72 0.0025 21.9 2.7 21 26-46 39-59 (75)
176 2inf_A URO-D, UPD, uroporphyri 20.3 73 0.0025 25.9 3.2 36 24-61 296-331 (359)
177 2kj9_A Integrase; DNA_BRE_C su 20.3 84 0.0029 20.8 3.0 26 27-53 54-79 (118)
178 1pz1_A GSP69, general stress p 20.1 55 0.0019 26.4 2.4 64 32-96 243-310 (333)
No 1
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=100.00 E-value=1.7e-90 Score=544.70 Aligned_cols=151 Identities=72% Similarity=1.183 Sum_probs=149.4
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++||++||+
T Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~gl 80 (151)
T 3u5c_N 1 MGRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSNGL 80 (151)
T ss_dssp -CCTTSSCCCCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTC
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhcccC
Q 031857 81 APEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151 (151)
Q Consensus 81 ap~iPEDL~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~~A~~lv~ 151 (151)
+|+|||||||||||||+||||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus 81 apeiPEDL~~LikKAv~lrkHLe~n~kD~~sK~~L~liESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 151 (151)
T 3u5c_N 81 APEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALVN 151 (151)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 2
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=100.00 E-value=3.5e-90 Score=543.74 Aligned_cols=151 Identities=70% Similarity=1.122 Sum_probs=147.3
Q ss_pred CCCCC--CCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 031857 1 MGRMH--SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (151)
Q Consensus 1 M~Rmh--~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~n 78 (151)
||||| ++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|||+||++|||+|
T Consensus 1 M~rmh~~~~~kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~ 80 (153)
T 2xzm_O 1 MGRMQMKGKGKGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN 80 (153)
T ss_dssp ---CCSCSSCCCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT
T ss_pred CCCCCcCCCCCCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhcccC
Q 031857 79 GLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151 (151)
Q Consensus 79 glap~iPEDL~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~~A~~lv~ 151 (151)
|++|+|||||||||||||+||||||+|+||+||||+|||||||||||+||||++++||+||+|+|+||++||+
T Consensus 81 glapeiPEDL~~LikKAv~lRkHLe~n~kD~~sK~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~tA~~lv~ 153 (153)
T 2xzm_O 81 GCAPQLPEDLYFLIKKALSIRKHLEKNRKDKDSKYRLILVESRIHRLSRYYKLNQKLPPKWKYNAQTASALVQ 153 (153)
T ss_dssp TCCCSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCSSHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCcCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-76 Score=468.64 Aligned_cols=151 Identities=48% Similarity=0.806 Sum_probs=149.8
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeec-------chhHHH
Q 031857 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT-------GSKILR 73 (151)
Q Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vt-------G~ki~~ 73 (151)
|||||++|||+|+|++||++++|+|+++++||||++||+|||+|+||||||++||||||||+||+|| |+||++
T Consensus 1 M~rmh~~~kG~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gip~Vk~vt~~~~~~~G~ki~~ 80 (158)
T 3j20_Q 1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITR 80 (158)
T ss_dssp CCCCSSSSSCCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCCSCHHHHHCSSSTTSCCCTHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCCCCeeeccccccccCcCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhcccC
Q 031857 74 ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151 (151)
Q Consensus 74 ILk~nglap~iPEDL~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~WkY~~~~A~~lv~ 151 (151)
||++||++|+|||||++|++||++|++||+.|+||+||+|+|++++||++||.+||+++.+||+||+|+|+||++||.
T Consensus 81 iLk~~gl~p~iPEDL~~Lt~RI~~Lt~HLk~hkKD~hSrRgL~~lv~kRrrLL~YLk~kd~lp~~w~Y~~~ta~~lv~ 158 (158)
T 3j20_Q 81 ILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLVR 158 (158)
T ss_dssp HHHHHTCSCSSCHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCCHHHHHHHHC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceECHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999973
No 4
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=98.19 E-value=1.3e-06 Score=62.97 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 031857 89 YHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (151)
Q Consensus 89 ~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (151)
.-|=.+..++..|++.|+||.||+++|..+.++-+||.+|++++.
T Consensus 29 A~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 73 (88)
T 4a5u_B 29 ALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999999999999999999863
No 5
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=98.18 E-value=8.5e-07 Score=64.58 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 031857 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (151)
Q Consensus 88 L~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (151)
..-|-.+..++..|++.|+||.||+++|..+.++-+||.+|++++.
T Consensus 32 IA~LT~rI~~L~~Hlk~hkKD~~srRgL~~lv~kRrrLL~YLk~~d 77 (93)
T 3ulw_A 32 VALLTARIAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSYLKRKD 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999999999999999999999999999863
No 6
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=97.92 E-value=4.7e-05 Score=54.81 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=52.5
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 031857 71 ILRILKAHGLAP---EIPED-LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (151)
Q Consensus 71 i~~ILk~nglap---~iPED-L~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (151)
-.+|.++.+..+ -=||- ..-|-.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus 7 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 1a32_A 7 KREIIEQFKVHENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKD 73 (88)
T ss_dssp HHHHHHHTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345666666554 45665 5677789999999999999999999999999999999999999864
No 7
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=97.82 E-value=4.7e-05 Score=54.92 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCC---CChhh-HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 031857 71 ILRILKAHGLAP---EIPED-LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (151)
Q Consensus 71 i~~ILk~nglap---~iPED-L~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (151)
-.+|.++.+-.+ -=||- ..-|=.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus 8 K~~ii~~~~~~~~DTGS~EvQIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~~d 74 (89)
T 2vqe_O 8 KQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQRED 74 (89)
T ss_dssp HHHHHHTTCSSTTCCSSHHHHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCcccccchhHHHHHHHHHHHHHHHHHHcC
Confidence 345566655544 45665 5677789999999999999999999999999999999999999864
No 8
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=97.68 E-value=3.7e-05 Score=55.43 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 031857 88 LYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (151)
Q Consensus 88 L~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (151)
...|=.+..++..|++.|+||.||+++|...-++-+||.+|.+++.
T Consensus 28 iA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YL~~~d 73 (88)
T 3r8n_O 28 VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKD 73 (88)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCcccchhhHHHHHHHHHHHHHHHHHcC
Confidence 4556778999999999999999999999999999999999999863
No 9
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.42 E-value=3.4e-05 Score=55.97 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcC
Q 031857 87 DLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 133 (151)
Q Consensus 87 DL~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~ 133 (151)
-..-|=.+..++..|++.|+||.+++++|...-++-+||.+|.+++.
T Consensus 25 QIA~LT~rI~~Lt~Hlk~hkKD~~srRgL~~lv~kRrkLL~YLk~kd 71 (90)
T 3bbn_O 25 QVFCFTNKIRRLTLHLELHKKDYSSQRGLRKTLGKRQRLLAYLLKIN 71 (90)
T ss_dssp HHHHHHHHHTTTTTTTTTCTTCSTTSHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567788899999999999999999999999999999999999864
No 10
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=80.81 E-value=2.6 Score=34.40 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=47.3
Q ss_pred CCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031857 23 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 23 P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~G---Ip~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (151)
+.|+.....++.+.+.++|+ |.||+|+-+.--=++| +|.++.-+-..|.+.++.-+. .++++|.+.-|..+
T Consensus 233 ~~~~~~~~~~~~~~l~~ia~-g~s~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~-~~Ls~ee~~~l~~~ 306 (317)
T 1ynp_A 233 EGYLNYRYDELKLLRESLPT-DRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEA-TPLTAEERQHIQKL 306 (317)
T ss_dssp CCBTTBCHHHHHHHHHHSCS-SSCHHHHHHHHHHTSTTEEEEECCCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHc-CCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 46777788888899999999 9999999876555554 233333333334444443221 67888888777665
No 11
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.26 E-value=1.4 Score=25.21 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~i 84 (151)
+++++. +.|+.|...|+|.++|...| || .-..|.++|++.|+.|.+
T Consensus 6 ~~~~~~-~~i~~l~~~g~s~~~ia~~l----gv------s~~Tv~r~l~~~~~~~~~ 51 (52)
T 1jko_C 6 INKHEQ-EQISRLLEKGHPRQQLAIIF----GI------GVSTLYRYFPASSIKKRM 51 (52)
T ss_dssp SCTTHH-HHHHHHHHTTCCHHHHHHTT----SC------CHHHHHHHSCTTC-----
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH----CC------CHHHHHHHHHHccccccc
Confidence 455554 57778888999999987654 53 345677888888876643
No 12
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=78.16 E-value=1.5 Score=34.66 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=43.6
Q ss_pred CCCCC----ccCChH-HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHH
Q 031857 21 TPPSW----LKISSQ-DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 93 (151)
Q Consensus 21 ~~P~W----~~~~~e-eve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~Lik 93 (151)
..|.| +..+.+ .+...+.-|..-|+++++||.++.-.-.+=.-..-.=+...+.|++-|+. ++|+..++.
T Consensus 24 k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls---~~~i~~~l~ 98 (270)
T 3m66_A 24 KHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFS---KADVAQMVR 98 (270)
T ss_dssp TSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred hccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCC---HHHHHHHHH
Confidence 34777 788865 78888888888999999999888665332211111112244567777765 345554443
No 13
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=78.08 E-value=3.6 Score=28.65 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=45.5
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAV 96 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv 96 (151)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-+-..+
T Consensus 16 ~aP~VvAKG~~~~A~~I~~~A~e--------------~~VPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeil 75 (83)
T 3bzy_B 16 PLPLVIETGKDAKALQIIKLAEL--------------YDIPVIED---IPLARSLDKNIHKGQYITEDFFEPVAQLI 75 (83)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCTTCBCCGGGHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 34555555678888888888874 79998876 45888888 78899999999997765544
No 14
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=77.32 E-value=7.8 Score=27.81 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~iR 99 (151)
.+|-=+-.-.+++-+.|.++|++ +|||-+.. ..+.+.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (98)
T 3c01_E 16 PIPMISVYETNQRALAVRAYAEK--------------VGVPVIVD---IKLARSLFKTHRRYDLVSLEEIDEVLRLLVWL 78 (98)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCeecC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 35555555678888889988874 79998876 45888887 78899999999998888777665
Q ss_pred HHHhHc
Q 031857 100 KHLERN 105 (151)
Q Consensus 100 kHLe~n 105 (151)
--|+..
T Consensus 79 ~~l~~~ 84 (98)
T 3c01_E 79 EEVENA 84 (98)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 555543
No 15
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=76.56 E-value=3.9 Score=29.33 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=46.8
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~ 97 (151)
.+|-=+-.-.+++-+.|.++|++ ||||-+.. ..+.|.|- .-.+..+||++||.-+-..+.
T Consensus 31 ~aP~VvAKG~~~~A~~I~~~A~e--------------~gVPi~e~---~~LAr~L~~~~~ig~~IP~ely~aVAeiLa 91 (97)
T 3t7y_A 31 KAPWIIAMGVNLRAKRIIAEAEK--------------YGVPIMRN---VPLAHQLLDEGKELKFIPETTYEAVGEILL 91 (97)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCBTSBCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCeEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHH
Confidence 35666666778888999988874 89998876 45888886 778999999999977665443
No 16
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=75.97 E-value=1.5 Score=28.90 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCC
Q 031857 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPE 83 (151)
Q Consensus 37 Ivklak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~ 83 (151)
|.++|+ -|+++|-|-.+|.+. |.|..-|-.+|.++.++-|..|.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~---~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNP---DKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCC---CCSCHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCcc
Confidence 344454 499999999999876 45788999999999999999875
No 17
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=74.22 E-value=3 Score=31.41 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngla 81 (151)
.+-+|++++.+++++.-..+++-|-+++ +.++|+.+.+++++-|+-
T Consensus 12 ~~~~~~~~~~~~L~~~F~~Fa~fG~~~~---------------~~M~~k~f~K~~kD~~li 57 (125)
T 1pul_A 12 AAAAGFNWDDADVKKRWDAFTKFGAATA---------------TEMTGKNFDKWLKDAGVL 57 (125)
T ss_dssp ------CCCHHHHHHHHHHHHHHTCSSS---------------SCCCHHHHHHHHHHHTSC
T ss_pred HHHHhcCccHHHHHHHHHHHHhcCCCcc---------------ccCcHHHHHHHHHHCCCC
Confidence 4567999999999999999999887765 557888888888887776
No 18
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=73.90 E-value=3.2 Score=37.18 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCcee
Q 031857 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVK 64 (151)
Q Consensus 30 ~eeve~~IvklakkG~---~pSqIG~iLRD~~GIp~Vk 64 (151)
-+++++.|.+++-..+ ||.|+|.+|.|..|+|..|
T Consensus 175 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lgl~~~~ 212 (540)
T 4dfk_A 175 IARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIG 212 (540)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCC
Confidence 4577888888884433 8999999999999999876
No 19
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=72.84 E-value=1.7 Score=37.37 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCCCCCCCcCCCCCCCCCCCc----------cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 5 HSRGKGISASALPYKRTPPSWL----------KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 5 h~~~kG~S~S~~P~~~~~P~W~----------~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
++.+.+.-++..+-..+.|+|- ++|.||.++.+-.+..--+||+|||-.|
T Consensus 6 ~~~~~~~~~~p~~~~~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL 65 (377)
T 3r88_A 6 GSSGGSRGGSPKAEAASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFA 65 (377)
T ss_dssp ------------------CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3445554456556666789997 6799999999999999999999998765
No 20
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=72.05 E-value=4 Score=29.14 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~iR 99 (151)
.+|-=+-.-.+++-+.|.++|++ +|||-+.. ..+.|.|- .-.+..+||++||.-|-..+..=
T Consensus 16 ~AP~VvAKG~~~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 78 (93)
T 2vt1_B 16 PAPFISLIETNQCALAVRKYANE--------------VGIPTVRD---VKLARKLYKTHTKYSFVDFEHLDEVLRLIVWL 78 (93)
T ss_dssp SSCEEEEEEEHHHHHHHHHHHHH--------------TTCCEEEC---HHHHHHHHHHCCSSEECCTTTHHHHHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHH--------------cCCCEEEC---HHHHHHHHHcCCCCCccCHHHHHHHHHHHHHH
Confidence 35555556678889999998874 79998876 45888887 77899999999998887766654
Q ss_pred HHHh
Q 031857 100 KHLE 103 (151)
Q Consensus 100 kHLe 103 (151)
--|+
T Consensus 79 ~~l~ 82 (93)
T 2vt1_B 79 EQVE 82 (93)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 4443
No 21
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=70.24 E-value=5.9 Score=30.30 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=50.6
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVAIR 99 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~iR 99 (151)
.+|-=+---.+++-+.|.++|++ ||||-+.. ..+.+.|- .-.+..+||++||.-|-..+..=
T Consensus 69 ~AP~VvAKG~g~~A~~I~e~A~e--------------~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v 131 (144)
T 2jlj_A 69 PLPLVTFKYTDAQVQTVRKIAEE--------------EGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEVLRWL 131 (144)
T ss_dssp SSCEEEEEEETHHHHHHHHHHHH--------------HTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--------------cCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 45655555678888889988874 89998876 45888887 78899999999998887777665
Q ss_pred HHHhH
Q 031857 100 KHLER 104 (151)
Q Consensus 100 kHLe~ 104 (151)
-.|+.
T Consensus 132 ~~l~~ 136 (144)
T 2jlj_A 132 ERQNI 136 (144)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 54544
No 22
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=69.47 E-value=8 Score=32.66 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031857 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (151)
...+.+..|-.|..-|++|+|||.+|.-..+|-.- +=..+...|..-|+. |||+..+|+++
T Consensus 42 ~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~---~l~~~i~~L~~LGls---~e~V~kiL~k~ 102 (335)
T 4fp9_B 42 GSLELERVMSSLLDMGFSNAHINELLSVRRGASLQ---QLLDIISEFILLGLN---PEPVCVVLKKS 102 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH---HHHHHHHHHHHTTCC---HHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh---HHHHHHHHHHHcCCC---HHHHHHHHHhC
Confidence 34577888888999999999999999988766321 112345567777876 56777666664
No 23
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=65.48 E-value=5.3 Score=31.60 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=32.9
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCC
Q 031857 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA 61 (151)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp 61 (151)
|...+..|+...|+.+.+.|.+.++|-..|...||--
T Consensus 3 ~~~~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~ 39 (345)
T 3hot_A 3 SFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQ 39 (345)
T ss_dssp --CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSC
T ss_pred cccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999999999943
No 24
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=65.42 E-value=14 Score=26.03 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCCCcCCCC----CCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHH----HHHcCCC
Q 031857 10 GISASALPY----KRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRI----LKAHGLA 81 (151)
Q Consensus 10 G~S~S~~P~----~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~I----Lk~ngla 81 (151)
|.|+|.-|. ...+..| ++|||.+-+.++ |+.- ..|.+ +.|+|..++.. |++-++.
T Consensus 1 ~~~~~~~~~p~~~~~~v~~W---s~edV~~WL~~~---Gl~~------Y~~~F-----~~IdG~~LL~Lt~~dLk~~~Lg 63 (97)
T 2d8c_A 1 GSSGSSGMLSARTMKEVVYW---SPKKVADWLLEN---AMPE------YCEPL-----EHFTGQDLINLTQEDFKKPPLY 63 (97)
T ss_dssp CCCSSCSCCCCSCCSCCSSC---CTTHHHHHHHHT---TCTT------TTTTT-----TTCCHHHHHTCCHHHHHSSSSS
T ss_pred CCCCCCCCCCCCCCCchhhC---CHHHHHHHHHHc---CCHH------HHHHH-----HcCCCHHHhcCCHHHHhhCCCC
Confidence 556666544 3455678 789998887653 5521 12333 45999988754 6764444
Q ss_pred CCChhhHHHHHHHHHHHH
Q 031857 82 PEIPEDLYHLIKKAVAIR 99 (151)
Q Consensus 82 p~iPEDL~~LikKAv~iR 99 (151)
-.-..+-..|+...-.|+
T Consensus 64 I~~~g~rkkl~~~I~~L~ 81 (97)
T 2d8c_A 64 RVSSDNGQRLLDMIETLK 81 (97)
T ss_dssp SCSTTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 455555555655554554
No 25
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=65.23 E-value=7.9 Score=29.38 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=46.5
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~ 97 (151)
.+|-=+---.+++-+.|.++|+ +||||-+.. ..+.+.|- .-.+..+||++||.-|-..+.
T Consensus 70 ~AP~VvAKG~g~~A~~I~e~A~--------------e~gVPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 130 (137)
T 3bzs_A 70 PLPLVIETGKDAKALQIIKLAE--------------LYDIPVIED---IPLARSLYKNIHKGQYITEDFFEPVAQLIR 130 (137)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH--------------HHTCCEEEC---HHHHHHHHHHSCTTCBCCGGGHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH--------------HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Confidence 3555555567888888988887 489998876 45888887 788999999999977765544
No 26
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.72 E-value=15 Score=24.93 Aligned_cols=51 Identities=22% Similarity=0.129 Sum_probs=34.9
Q ss_pred CCCCcCCCCCCCCCCCcc-CChHHHHHHHHHHHhcCCCcchhhhHhhhccCC
Q 031857 10 GISASALPYKRTPPSWLK-ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60 (151)
Q Consensus 10 G~S~S~~P~~~~~P~W~~-~~~eeve~~IvklakkG~~pSqIG~iLRD~~GI 60 (151)
|.|+|.-|+-...|..++ +|+++++.+-..+.+.-++...--..|-.+.|+
T Consensus 1 gss~s~~~~p~~~p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l 52 (89)
T 2dmp_A 1 GSSGSSGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKL 52 (89)
T ss_dssp CCSSCCCCCSCCCSSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCC
Confidence 678888888887887777 899988888776666655554444444444443
No 27
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=64.43 E-value=12 Score=25.59 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=30.7
Q ss_pred cCChHHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 27 KISSQDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 27 ~~~~eeve~~Ivklak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
.+++++. +.|+.+.. .+.|+.+|-..| |+ .+.-..|.++|+++|+
T Consensus 60 ~l~~~~~-~~i~~~~~~~~~s~~~i~~~l----g~----~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDE-RNVIRAASNSCKTARDIRNEL----QL----SASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHH-HHHHHHHHHCCCCHHHHHHHT----TC----CSCHHHHHHHHHHTC-
T ss_pred cCCHHHH-HHHHHHHhCCCCCHHHHHHHH----CC----CccHHHHHHHHHHCCC
Confidence 4566665 44555444 558999888766 65 3555779999999998
No 28
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=61.57 E-value=6.6 Score=25.49 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=33.5
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031857 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (151)
Q Consensus 43 kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~i 84 (151)
-|+|+|-|..+|.+.-+--.|..-|-.+|.++.++-|..|..
T Consensus 10 aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 10 AGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 499999999999976411156778889999999999998874
No 29
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=60.52 E-value=6.9 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=26.1
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 25 WLKISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
.-++++++|.+.+..|.++|++|+.|...+.
T Consensus 48 l~~it~~~i~~~~~~l~~~g~s~~t~~~~~~ 78 (118)
T 2kd1_A 48 LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIK 78 (118)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467999999999999999999998876653
No 30
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=60.51 E-value=8 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.7
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
.-++++++|.+.+..|.++|++|+.+...+
T Consensus 50 l~~It~~~i~~~~~~l~~~~~s~~t~~~~~ 79 (117)
T 2kkp_A 50 LKKLQPADIQRLYASKLESGLSPTRVRYIH 79 (117)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456799999999999999999999887665
No 31
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=60.20 E-value=8.7 Score=34.33 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhcC---CCcchhhhHhhhccCCCceee------ecchhHHHHHHHcCCCCCChhhH
Q 031857 30 SQDVEDNICKFAKKG---LTPSQIGVILRDSHGIAQVKS------VTGSKILRILKAHGLAPEIPEDL 88 (151)
Q Consensus 30 ~eeve~~IvklakkG---~~pSqIG~iLRD~~GIp~Vk~------vtG~ki~~ILk~nglap~iPEDL 88 (151)
-+++++.|.+++-.- -||.|+|.+|-|..|+|..|. -|...+++-|.+. .++++.+
T Consensus 240 ~~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kktk~g~~st~~~vL~~l~~~---~p~~~~i 304 (605)
T 2kfn_A 240 LAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALD---YPLPKVI 304 (605)
T ss_dssp HHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSCCCCCC----TTTCCHHHHHTTT---CSHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCCCCCCcCCCCCccccHHHHHHHHhc---ChHHHHH
Confidence 356777777777422 378999999999999985442 4455666666432 4445444
No 32
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=59.65 E-value=11 Score=28.15 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKA 95 (151)
.+|-=+-.-.+++-+.|.++|+ +||||-+.. ..+.+.|- .-.+..+||++||.-|-..
T Consensus 60 ~AP~VvAKG~~~~A~~I~~~A~--------------e~~VPi~e~---~~LAr~Ly~~~~ig~~IP~ely~aVAei 118 (123)
T 2jli_A 60 PLPLVTFKYTDAQVQTVRKIAE--------------EEGVPILQR---IPLARALYWDALVDHYIPAEQIEATAEV 118 (123)
T ss_dssp SSCEEEEEEETHHHHHHHHHHH--------------HHTCCEEEC---HHHHHHHHHHCCTTSBCCGGGHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHH--------------HcCCCEEeC---HHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence 3555555567888888888887 479998876 45888887 7889999999999766443
No 33
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=58.81 E-value=11 Score=24.46 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCccCChHHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 031857 24 SWLKISSQDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (151)
Q Consensus 24 ~W~~~~~eeve~~Ivklak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPE 86 (151)
.+-++++++|.+.+..|.+ +|++++-|...+.- + +.+.+.+.++|+-..=|-
T Consensus 48 ~l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~------l-----r~~~~~a~~~~~i~~nP~ 100 (112)
T 2key_A 48 QFHELTEDFLRDYLIYMKKTLCNADSTAQRNLST------I-----KIYVSAAIKKGYMENDPF 100 (112)
T ss_dssp CTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHH------H-----HHHHHHHHHTTSCCSCHH
T ss_pred CHHHcCHHHHHHHHHHHHHccCcchhhHHHHHHH------H-----HHHHHHHHHCCCcccCCc
Confidence 3667899999999999998 99999988877652 2 236667777787655453
No 34
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=57.48 E-value=9.5 Score=25.59 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhh
Q 031857 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPED 87 (151)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPED 87 (151)
.|.++++++|.+-+..|.++|++|+-|-..|.- + +.+.+.|.+.|+-+.=|-+
T Consensus 50 ~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~------l-----r~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 50 AMRELTGWKLDEYETFRRGSDVSPATLNGEMQT------L-----KNWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp SGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH------H-----HHHHHHHHHTTSSCTTSGG
T ss_pred ChHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHH------H-----HHHHHHHHHcCCcccCHHH
Confidence 578899999999999999999999988877642 2 3477788888876655543
No 35
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=56.79 E-value=13 Score=33.68 Aligned_cols=60 Identities=28% Similarity=0.394 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhcCC---CcchhhhHhhhccCCCceee-ecchhH-HHHHHHcCCCCCChhhHH
Q 031857 30 SQDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVKS-VTGSKI-LRILKAHGLAPEIPEDLY 89 (151)
Q Consensus 30 ~eeve~~IvklakkG~---~pSqIG~iLRD~~GIp~Vk~-vtG~ki-~~ILk~nglap~iPEDL~ 89 (151)
-+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|. =||-+. ..+|++-.-..++++.+.
T Consensus 227 ~~~l~~~~~~~~g~~fN~~Spkql~~~Lf~~lgl~~~kktktg~st~~~vL~~l~~~~p~~~~il 291 (592)
T 3pv8_A 227 LGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENIL 291 (592)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCCEETTEECCCHHHHHHTTTTCTHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHH
Confidence 4677888888885433 68999999999999998653 223221 235554332344555443
No 36
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=56.73 E-value=6.8 Score=29.22 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=42.7
Q ss_pred hhHHHHHHHHH---------HHHHHHhHcCCcccchhH---HHHHHHHH-HHHHHHHHhcCC-CCC
Q 031857 86 EDLYHLIKKAV---------AIRKHLERNRKDKDSKFR---LILVESRI-HRLARYYKKTKK-LPP 137 (151)
Q Consensus 86 EDL~~LikKAv---------~iRkHLe~n~kD~~~k~~---L~LiESkI-~RL~rYYk~~~~-LP~ 137 (151)
|+|+++|-+|- .+|+-|+++-|.+++... .++|-+|. +.+++||=.... +|+
T Consensus 6 q~L~~~lS~AY~DpeVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~~~P~ 71 (111)
T 1tdp_A 6 QTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPS 71 (111)
T ss_dssp HHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCCCCCG
T ss_pred HHHHHHHHHHhCCHhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcccCcH
Confidence 68889888884 589999999999988775 88888886 568999988776 665
No 37
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=54.12 E-value=27 Score=25.30 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=43.2
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRK 100 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~iRk 100 (151)
+++ +|+.+.||++...|.|-.+|- ...|||.... +.+-|.++ +|+..-+++|-..+.
T Consensus 12 k~t-~e~~e~I~~~i~~G~sl~~i~----~~~~~ps~~T-----~~~W~~~~-------~ef~e~~~~Ar~~~~ 68 (140)
T 4dyq_A 12 DYM-PEVADDICSLLSSGESLLKVC----KRPGMPDKST-----VFRWLAKH-------EDFRDKYAKATEARA 68 (140)
T ss_dssp SCC-TTHHHHHHHHHHTTCCHHHHH----TSTTCCCHHH-----HHHHHHHC-------HHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHCCCcHHHHH----hcCCCCCHHH-----HHHHHHcC-------HHHHHHHHHHHHHHH
Confidence 444 467788999999999988876 3578886554 78888886 568888888866644
No 38
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=53.01 E-value=17 Score=29.18 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=38.4
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhcc-CCCceeeecchh----HHHHHHHcCCCCCChhhHHHHHHHHH
Q 031857 33 VEDNICKFAK-KGLTPSQIGVILRDSH-GIAQVKSVTGSK----ILRILKAHGLAPEIPEDLYHLIKKAV 96 (151)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~iLRD~~-GIp~Vk~vtG~k----i~~ILk~nglap~iPEDL~~LikKAv 96 (151)
..+.+.++|+ .|.||+|+-+.--=++ ||.. .|.|.+ |.+.++.-++.+++++|-+.-|..+.
T Consensus 254 ~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~--vI~g~~~~~~l~en~~a~~~~~~L~~e~~~~i~~~~ 321 (327)
T 3eau_A 254 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSS--VLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 321 (327)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHSSTTCCE--EEECCSSHHHHHHHHGGGGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHhCCCCce--EEeCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 3456677775 7999999987654444 5532 245544 33444433444578888888777653
No 39
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=52.62 E-value=3.4 Score=29.52 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=21.8
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLRD~~ 58 (151)
..+++|+++.+-+|++.. .||++|-.|.
T Consensus 35 ~~~~ee~~~~~~~l~~~~----digIIlIte~ 62 (102)
T 2i4r_A 35 VTSDEEIVKAVEDVLKRD----DVGVVIMKQE 62 (102)
T ss_dssp CCSHHHHHHHHHHHHHCS----SEEEEEEEGG
T ss_pred CCCHHHHHHHHHHHhhCC----CeEEEEEeHH
Confidence 468899999999999874 6777766553
No 40
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=57.54 E-value=3 Score=29.38 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHH-HcCCCCCChhhHHHHHHHHHH
Q 031857 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK-AHGLAPEIPEDLYHLIKKAVA 97 (151)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk-~nglap~iPEDL~~LikKAv~ 97 (151)
+|-=+-.-.+++-+.|.++|+ +||||-+... .+.|.|- .-.+..+||++||.-+-..+.
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~--------------e~~VPi~e~~---~LAr~Ly~~~~ig~~IP~ely~aVAeiLa 76 (87)
T 3b1s_B 17 APVVVAKGKGTIAQKIVEIAE--------------NYSIPVVRKP---ELARALYPAVEVGKEISPKFYKAVAEIIA 76 (87)
Confidence 455555566677777777766 4799988763 4777776 678889999999976655443
No 41
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=52.18 E-value=30 Score=25.44 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=48.6
Q ss_pred cCChHHHHHHHHHHHhc-------CC-------CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHH
Q 031857 27 KISSQDVEDNICKFAKK-------GL-------TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 92 (151)
Q Consensus 27 ~~~~eeve~~Ivklakk-------G~-------~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~Li 92 (151)
..++|++.+.+.+..++ |+ ||+.++..|.+..+++ |+-|+|-.+--.|+.-...- .-.+|-.|+
T Consensus 41 ~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~a~~l~~~~~~~-v~vI~gvnlpmllea~~~~~-~~~~L~el~ 118 (139)
T 3gdw_A 41 TMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSFGNMLFEETGIR-TKAITMTSTMIVLEAIRMAS-VGRSLEDIY 118 (139)
T ss_dssp TSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGHHHHHHHHHCCC-EEEECSCCHHHHHHHHHHHH-TTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHHHHHHHHhhCCC-EEEEeCCCHHHHHHHHHHhh-cCCCHHHHH
Confidence 45788888888887653 32 8999999998886654 99999999876665321100 123555666
Q ss_pred HHH-HHHHHHH
Q 031857 93 KKA-VAIRKHL 102 (151)
Q Consensus 93 kKA-v~iRkHL 102 (151)
..| .+++...
T Consensus 119 ~~~~~~~~~~~ 129 (139)
T 3gdw_A 119 QNIQLSFESVV 129 (139)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 666 4554443
No 42
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=51.85 E-value=28 Score=28.52 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccCC--CceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 031857 33 VEDNICKFAK-KGLTPSQIGVILRDSHGI--AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVA 97 (151)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~iLRD~~GI--p~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~ 97 (151)
+.+.+.++|+ .|.||+|+-+.--=++|| |.+..-+-..|.+.|..-++ +++++.+..|..+..
T Consensus 265 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~v~~~I~g~~~~~~l~enl~a~~~--~L~~e~~~~l~~~~~ 330 (348)
T 3n2t_A 265 AMDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGW--SLTDEEKKAVDDILA 330 (348)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTTEEEEEECSSGGGGTTHHHHSSC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Confidence 4456777775 799999998764444464 55555555666677766555 799888888877653
No 43
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.24 E-value=12 Score=20.58 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
+++++. ..|+.+...|+|..+|...|
T Consensus 6 l~~~~~-~~i~~~~~~g~s~~~IA~~l 31 (51)
T 1tc3_C 6 LSDTER-AQLDVMKLLNVSLHEMSRKI 31 (51)
T ss_dssp CCHHHH-HHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHH
Confidence 345544 45667788999999998765
No 44
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=49.66 E-value=23 Score=24.34 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=31.5
Q ss_pred CCCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhhh
Q 031857 16 LPYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILRD 56 (151)
Q Consensus 16 ~P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~iLRD 56 (151)
.|.++..--.-.++.++|+ ..|..|...|+|..+|..+|.+
T Consensus 28 ~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 28 VPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 3554444455568999988 4688999999999999999965
No 45
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=49.13 E-value=19 Score=29.34 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 031857 33 VEDNICKFAK-KGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (151)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~iLRD~~G---Ip~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv 96 (151)
+.+.+.++|+ .|.||+|+-+.--=++| +|.+..-+-..|.+.++.-++ ++++|-+..|..+.
T Consensus 244 ~~~~l~~ia~~~g~t~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~e~~~~l~~~~ 309 (337)
T 3v0s_A 244 IYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNVGALKV--XLTKEDLKEISDAV 309 (337)
T ss_dssp -CHHHHHHHHHTTSCHHHHHHHHHHTTCTTBCCCCCCSCHHHHHHHHHGGGC--CCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHhh
Confidence 3456677776 69999999876555565 455555455556666655444 78888887777654
No 46
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=48.65 E-value=19 Score=34.11 Aligned_cols=56 Identities=30% Similarity=0.597 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCC--CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031857 33 VEDNICKFAKKGL--TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (151)
Q Consensus 33 ve~~IvklakkG~--~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (151)
+++.|-++.++|- =|.+.-..|-|.||+|.= =+..|++|+|+.-++|++.+.+|.+
T Consensus 434 l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~d------lt~~ia~e~g~~vd~~~~F~~~m~~ 491 (752)
T 2zze_A 434 VRREIAKLKKKGIKEIPVEXLVTFYESHGLTPE------IVXEIAEKEGVKVNIPDNFYSMVAK 491 (752)
T ss_dssp HHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHH------HHHHHHTTSSCCCCCCTTHHHHHHG
T ss_pred HHHHHHHhhhcCCCccCHHHHHHHHhccCCCHH------HHHHHHHHcCCccCCcccHHHHHHH
Confidence 4445556655443 477888999999999952 1456889999999999999887754
No 47
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=48.46 E-value=4.4 Score=30.78 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=9.8
Q ss_pred hHHHHHHHcCCCCCChhhHHHH
Q 031857 70 KILRILKAHGLAPEIPEDLYHL 91 (151)
Q Consensus 70 ki~~ILk~nglap~iPEDL~~L 91 (151)
.+.+.|.+.|+-+.-|+|++-|
T Consensus 259 ~~~~~l~~~g~i~~~~~~~~~~ 280 (280)
T 1zbm_A 259 KLYEMAEAKGLIKMPKLDILRL 280 (280)
T ss_dssp HHHHHHHTTTCC----------
T ss_pred HHHHHHHHcCCcCCCChhhccC
Confidence 4667799999999999998854
No 48
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=48.44 E-value=4.1 Score=27.17 Aligned_cols=11 Identities=55% Similarity=1.150 Sum_probs=9.6
Q ss_pred CCCChhhHHHH
Q 031857 81 APEIPEDLYHL 91 (151)
Q Consensus 81 ap~iPEDL~~L 91 (151)
.|++|+||.+|
T Consensus 7 EpDLP~DL~~l 17 (57)
T 2ka4_B 7 EPDLPHDLRHL 17 (57)
T ss_dssp CCCCCHHHHTS
T ss_pred CCCccHHHHHh
Confidence 68999999876
No 49
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=48.06 E-value=5.6 Score=33.59 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=34.7
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
..|.|+. +..+...++..|.+ |+|.++|-. |.|.+.+|+|++.|-
T Consensus 269 ~~p~gl~-d~s~~p~L~~~L~~-g~se~~i~k-------------i~g~N~lRv~~~~~~ 313 (318)
T 3neh_A 269 DHVKGLE-HVGKYQSFLETLEK-HYTKEEIEG-------------FASRNFLNHLPKEGH 313 (318)
T ss_dssp SCBBTBS-SGGGHHHHHHHHTT-TSCHHHHHH-------------HHTHHHHHTCCC---
T ss_pred CCCCCCC-CHHHHHHHHHHHHh-cCCHHHHHH-------------HHhHhHHHHHhhhcc
Confidence 4578887 78889999999999 999999865 567778888877763
No 50
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=51.93 E-value=4.3 Score=29.98 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=47.8
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHH-HHcCCCCCChhhHHHHHHHHHHHHH
Q 031857 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRIL-KAHGLAPEIPEDLYHLIKKAVAIRK 100 (151)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~IL-k~nglap~iPEDL~~LikKAv~iRk 100 (151)
+|-=+-.-.+++-+.|.++|+ +||||-+... .+.+.| ..-.+..+||++||.-|-..+..=-
T Consensus 17 AP~VvAKG~~~~A~~I~e~A~--------------e~gVPi~e~~---~LAr~Ly~~~~ig~~IP~ely~aVAeiLa~v~ 79 (114)
T 3b0z_B 17 APKVVAKGAGLIALRIREIGA--------------EHRVPTLEAP---PLARALYRHAEIGQQIPGQLYAAVAEVLAWVW 79 (114)
Confidence 454555556677777777776 4799988763 477788 5678889999999988877766655
Q ss_pred HHhH
Q 031857 101 HLER 104 (151)
Q Consensus 101 HLe~ 104 (151)
.|+.
T Consensus 80 ~l~~ 83 (114)
T 3b0z_B 80 QLKR 83 (114)
Confidence 5553
No 51
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=44.25 E-value=30 Score=23.69 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=26.7
Q ss_pred CCCcc---CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceee
Q 031857 23 PSWLK---ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKS 65 (151)
Q Consensus 23 P~W~~---~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~ 65 (151)
|.|-. ++.|++++.|.....-.+|.++-+- +||||.-..
T Consensus 6 pk~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak----~yGVP~sTL 47 (70)
T 2cob_A 6 SGRGRYRQYNSEILEEAISVVMSGKMSVSKAQS----IYGIPHSTL 47 (70)
T ss_dssp CCSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHH----HHTCCHHHH
T ss_pred cccccccccCHHHHHHHHHHHHcCCccHHHHHH----HhCCChHHH
Confidence 55554 4788888888776443388887664 699997543
No 52
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=43.17 E-value=13 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCc--eeeecchhHHHHHHHcCC
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQ--VKSVTGSKILRILKAHGL 80 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~--Vk~vtG~ki~~ILk~ngl 80 (151)
+.-+++-..|.++-...-|..+|...|.++|+++. +. -.=...++.|.++|+
T Consensus 39 i~Ln~~a~~Iw~l~DG~rtv~eIv~~L~~~y~~~~e~i~-~DV~~FL~~L~~~g~ 92 (95)
T 3g2b_A 39 VELDDIALVVAQRYDGTQSLAQIAQTLAAEFDADASEIE-TDVIELTTTLHQKRL 92 (95)
T ss_dssp CCCCTHHHHHHHHCCSSSCHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHTTC
T ss_pred eecCHHHHHHHHHccCCCCHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHCcC
Confidence 35678888899999989999999999999999881 11 011236667777775
No 53
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=42.98 E-value=14 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 031857 30 SQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (151)
Q Consensus 30 ~eeve~~IvklakkG~~pSqIG~iLRD~~G 59 (151)
+.|...+|.++-++|.|..||=-.|.+.||
T Consensus 42 A~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 42 ATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 568889999999999999999999999998
No 54
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=42.90 E-value=20 Score=30.86 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=34.7
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 031857 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (151)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~n 78 (151)
.|.|+. +..+...++..|.+.|+|.++|-. |.|.+.+|+|++.
T Consensus 312 ~p~gl~-d~s~~p~L~~~L~~rG~se~~i~k-------------i~g~N~lRvl~~~ 354 (364)
T 3ly0_A 312 IPQGIA-DVTGLPALQAAMRAHGYDEPLMRK-------------LCHENWYGLLERT 354 (364)
T ss_dssp CCTTTC-SGGGHHHHHHHHHHHTCCHHHHHH-------------HHTHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHCCCCHHHHHH-------------HHhHhHHHHHHHH
Confidence 567776 778899999999999999998865 5677788888764
No 55
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=42.35 E-value=13 Score=26.11 Aligned_cols=25 Identities=32% Similarity=0.756 Sum_probs=21.6
Q ss_pred HHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHh
Q 031857 96 VAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKK 131 (151)
Q Consensus 96 v~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~ 131 (151)
-|++.|++.|. -|-|||-+.-||+.
T Consensus 12 ~N~k~hi~mn~-----------~edKIhAmNaYYrs 36 (80)
T 2gsv_A 12 ENLKQHIEMNQ-----------SEDKIHAMNSYYRS 36 (80)
T ss_dssp HHHHHHHHHCS-----------SSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----------cHhHHHHHHHHHHH
Confidence 37899999998 47799999999986
No 56
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=42.26 E-value=50 Score=26.48 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=38.6
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCC---CceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 031857 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGI---AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (151)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~iLRD~~GI---p~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv 96 (151)
++.+.+.++|+ .|.||+|+-+.--=++|. |.+..-+-..|.+.|+.-+ .+++++.+.-|..+.
T Consensus 272 ~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~enl~a~~--~~L~~e~~~~l~~~~ 338 (346)
T 1lqa_A 272 KAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLH--LELSEDVLAEIEAVH 338 (346)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSHHHHHHHHGGGG--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Confidence 44556667764 799999998766556652 3333333344555554433 378887777776553
No 57
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=41.64 E-value=62 Score=26.18 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-CC--CCCChhhHHHHHHHHH
Q 031857 31 QDVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-GL--APEIPEDLYHLIKKAV 96 (151)
Q Consensus 31 eeve~~Ivklak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~n-gl--ap~iPEDL~~LikKAv 96 (151)
.++.+.+.++|+ .|.||+|+-+.--=+++-. +-.|.|.+=.+-|++| +. ..+++++-+..|..+.
T Consensus 264 ~~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i~~~~ 332 (346)
T 3n6q_A 264 LNSLRLLNEMAQQRGQSMAQMALSWLLKDDRV-TSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHI 332 (346)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHTSSTTC-SEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHhCCCC-cEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 345556777775 7999999987655555411 2344454433344444 32 3689988888887764
No 58
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=41.32 E-value=5.6 Score=29.88 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 29 SSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
+++++ +.|.+|..+|+|.++|...|-
T Consensus 144 ~~~~v-~~i~~l~~~G~s~~~Ia~~l~ 169 (193)
T 3plo_X 144 TKAEW-EQAGRLLAQGIPRKQVALIYD 169 (193)
T ss_dssp ---------------------------
T ss_pred CHHHH-HHHHHHHHCCCCHHHHHHHHC
Confidence 44444 568888889999999987764
No 59
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=41.09 E-value=33 Score=22.06 Aligned_cols=31 Identities=6% Similarity=-0.088 Sum_probs=17.7
Q ss_pred CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 44 GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 44 G~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
|+|++.|..+-+... .| +-..+.+|.+.-|+
T Consensus 38 gis~~~is~~E~G~~-~p-----~~~~l~~ia~~l~v 68 (86)
T 3eus_A 38 DKPQSFVAKVETRER-RL-----DVIEFAKWMAACEG 68 (86)
T ss_dssp TCCHHHHHHHHTTSS-CC-----BHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHCCCC-CC-----CHHHHHHHHHHcCC
Confidence 666666666655544 22 33446667776666
No 60
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=40.33 E-value=16 Score=32.47 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=48.7
Q ss_pred ccCChHHHHHHHHHHHhc-CCC---cchhhhHhhhcc---CCCceeeecch--hHHHHH-HHcCCCCCChhhHHHHHHHH
Q 031857 26 LKISSQDVEDNICKFAKK-GLT---PSQIGVILRDSH---GIAQVKSVTGS--KILRIL-KAHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 26 ~~~~~eeve~~Ivklakk-G~~---pSqIG~iLRD~~---GIp~Vk~vtG~--ki~~IL-k~nglap~iPEDL~~LikKA 95 (151)
...|.+|+.+.|..++++ |+- -|-+|+.--.++ +.|.|-..||. |-.+.+ +.-|..|+||+.|-.|.++-
T Consensus 385 ~~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~~~~~~V~l~Ta~p~Kf~~~v~~a~~~~~~~P~~l~~l~~~~ 464 (487)
T 3v7n_A 385 GRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLRPGVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALP 464 (487)
T ss_dssp ECCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCCTTSCEEEEECBCGGGGHHHHHHHHSSCCCCCGGGTTGGGSC
T ss_pred EEECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhCCCCcEEEEecCCccccHHHHHHHhCCCCCCChHHHHHhcCc
Confidence 357999999999998874 863 345554322222 67888888876 544444 44588999999998887654
No 61
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=40.28 E-value=16 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 031857 30 SQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (151)
Q Consensus 30 ~eeve~~IvklakkG~~pSqIG~iLRD~~G 59 (151)
+.+....|.++-+.|.|..||=-.|.+.||
T Consensus 45 A~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 45 AADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 567888999999999999999999999998
No 62
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=40.25 E-value=16 Score=31.41 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCcchhhhHhhhc
Q 031857 31 QDVEDNICKFAKKGLTPSQIGVILRDS 57 (151)
Q Consensus 31 eeve~~IvklakkG~~pSqIG~iLRD~ 57 (151)
+.|.+.|.+|.+.|++++.|+++.|+.
T Consensus 331 ~~ia~~I~~l~~~g~~~~diaVL~r~~ 357 (647)
T 3lfu_A 331 RFVVNRIKTWQDNGGALAECAILYRSN 357 (647)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESSG
T ss_pred HHHHHHHHHHHHcCCCccCEEEEEeCc
Confidence 346677888888999999999999984
No 63
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=39.68 E-value=19 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.9
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 031857 26 LKISSQDVEDNICKFAKKGL 45 (151)
Q Consensus 26 ~~~~~eeve~~IvklakkG~ 45 (151)
+.+++|||-+...+|+.||+
T Consensus 35 ygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 35 YGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HCCCHHHHHHHHHHHHHTTS
T ss_pred hCCCHHHHHHHHHHHHHCCC
Confidence 45789999999999999996
No 64
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=39.17 E-value=41 Score=26.78 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHH-hcCCCcchhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031857 34 EDNICKFA-KKGLTPSQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 34 e~~Ivkla-kkG~~pSqIG~iLRD~~G---Ip~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (151)
.+.+.++| +.|.||+|+-+.--=+++ +|.+..-+-..|.+.++.-++ +++++.+.-|..+
T Consensus 245 ~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~--~L~~~~~~~l~~~ 308 (312)
T 1pyf_A 245 VNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADV--TLSQEDISFIDKL 308 (312)
T ss_dssp HHTTHHHHHHTTSCHHHHHHHHHHHSTTCCCBCCCCSSHHHHHHHHGGGGC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhccC--CCCHHHHHHHHHH
Confidence 35566777 479999999876544554 344444444455555554444 7888877777654
No 65
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=38.73 E-value=15 Score=21.21 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHh-cCCCcchhh
Q 031857 30 SQDVEDNICKFAK-KGLTPSQIG 51 (151)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqIG 51 (151)
++|+.+.+-++|+ .|.|.|++=
T Consensus 10 ~~~l~~~Ld~~a~~~g~srS~~i 32 (45)
T 2cpg_A 10 SESVLENLEKMAREMGLSKSAMI 32 (45)
T ss_dssp EHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHHH
Confidence 5788888899987 599988763
No 66
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=38.04 E-value=28 Score=26.27 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCCCCCccCC----------------hHHHHHHHHHHHhcCCCcchhhhHhhhccC-------CCc----eeeecchhHH
Q 031857 20 RTPPSWLKIS----------------SQDVEDNICKFAKKGLTPSQIGVILRDSHG-------IAQ----VKSVTGSKIL 72 (151)
Q Consensus 20 ~~~P~W~~~~----------------~eeve~~IvklakkG~~pSqIG~iLRD~~G-------Ip~----Vk~vtG~ki~ 72 (151)
-.+|+|.++- -+.+.+.|.++.-.| .|.. .-|+.+|| -|. |-.-|=.+.+
T Consensus 26 i~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g-~~G~--~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL 102 (150)
T 2v7f_A 26 IKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDG-PVGI--ERLRTYYGGRKNRGHAPERFYKAGGSIIRKAL 102 (150)
T ss_dssp CCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHC-SBCH--HHHHHHHCC----CCCTTSCCCHHHHHHHHHH
T ss_pred CCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhC-CCCH--HHHHHHHCCCccCCcCCccccccchHHHHHHH
Confidence 4678898871 235667777777788 5555 68999998 221 1223334577
Q ss_pred HHHHHcCCCC
Q 031857 73 RILKAHGLAP 82 (151)
Q Consensus 73 ~ILk~nglap 82 (151)
+.|++.|+--
T Consensus 103 ~~Le~~GlV~ 112 (150)
T 2v7f_A 103 QQLEAAGFVE 112 (150)
T ss_dssp HHHHHTTSEE
T ss_pred HHHHHCCCEE
Confidence 7888888643
No 67
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=37.56 E-value=33 Score=23.46 Aligned_cols=49 Identities=12% Similarity=0.299 Sum_probs=34.2
Q ss_pred cCChHHHHHHHHHHHhcC-----CCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 27 KISSQDVEDNICKFAKKG-----LTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG-----~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
..|.+.|.+.|.+|-..- +|-.+|-..|.++ ||.-.+. .+.+.=++-|+
T Consensus 15 ~~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRR----TVaKYRe~l~I 68 (76)
T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARR----TVAKYREMLGI 68 (76)
T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHH----HHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHH----HHHHHHHHcCC
Confidence 468899999999987654 7888888888776 7765543 34444444444
No 68
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=37.23 E-value=75 Score=25.41 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=38.4
Q ss_pred HHHHHHHHHhc-----CCCcchhhhHh-hhccCC---CceeeecchhHHHHHHHc-C-CC-CCChhhHHHHHHHHHH
Q 031857 33 VEDNICKFAKK-----GLTPSQIGVIL-RDSHGI---AQVKSVTGSKILRILKAH-G-LA-PEIPEDLYHLIKKAVA 97 (151)
Q Consensus 33 ve~~Ivklakk-----G~~pSqIG~iL-RD~~GI---p~Vk~vtG~ki~~ILk~n-g-la-p~iPEDL~~LikKAv~ 97 (151)
+.+.+.++|++ |.||+|+-+.- ..+-+| ..+-.|.|.+=.+-|++| + +. ++++++.+..|..+..
T Consensus 240 ~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~~I~g~~~~~~l~en~~a~~~~~L~~e~~~~l~~~~~ 316 (327)
T 1gve_A 240 GIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQAWN 316 (327)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTSSCCGGGTCEEEECCSSHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCHHHHHHHHHHhCCCccccCCCeEEECCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 44667777775 99999998643 343333 113445554433333333 1 22 3688888888877654
No 69
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=36.50 E-value=43 Score=22.92 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCCCCCCCCccCChHHHHH--HHHHHHhcCCCcchhhhHhhh
Q 031857 16 LPYKRTPPSWLKISSQDVED--NICKFAKKGLTPSQIGVILRD 56 (151)
Q Consensus 16 ~P~~~~~P~W~~~~~eeve~--~IvklakkG~~pSqIG~iLRD 56 (151)
.|.++..--.-.++.++|+. .|..|...|+|..+|...|..
T Consensus 29 ~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 29 NPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred CCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 34444444555689999885 678888899999999998864
No 70
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=35.94 E-value=27 Score=28.71 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=37.4
Q ss_pred HHHHHHHHHh-cCCCcchhhhHhhh-ccCCCceeeecchhHHHHHHHc----CCCCCChhhHHHHHHHHH
Q 031857 33 VEDNICKFAK-KGLTPSQIGVILRD-SHGIAQVKSVTGSKILRILKAH----GLAPEIPEDLYHLIKKAV 96 (151)
Q Consensus 33 ve~~Ivklak-kG~~pSqIG~iLRD-~~GIp~Vk~vtG~ki~~ILk~n----glap~iPEDL~~LikKAv 96 (151)
..+.+.++|+ .|.||+|+-+.--= +-||. -.|.|.+=.+-|++| ++.+++++|.+..|.++.
T Consensus 288 ~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~--~vI~g~~~~~~l~en~~a~~~~~~Ls~e~~~~i~~~~ 355 (367)
T 3lut_A 288 KLKELQAIAERLGCTLPQLAIAWCLRNEGVS--SVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSIL 355 (367)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHTSTTEE--EEEECCSSHHHHHHHHTHHHHGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCc--EEecCCCCHHHHHHHHHhhcccCCCCHHHHHHHHHHH
Confidence 3456777775 79999998765333 33442 234554434444444 233578888888777653
No 71
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=35.84 E-value=34 Score=29.68 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH 78 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~n 78 (151)
..|.|+. +..+.-.++..|.+.|+|..+|-. |.|.+++|+|++.
T Consensus 326 ~~P~gl~-dvs~~p~L~~~L~~rG~se~di~k-------------i~g~N~lRvl~~v 369 (400)
T 3id7_A 326 FTPDGLG-DVSGYPNLIAELLDRGWSQSDLAK-------------LTWKNAVRVLDAA 369 (400)
T ss_dssp CCCBTCS-STTCHHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHHHhhcCCCHHHHHH-------------HHHHhHHHHHHHH
Confidence 4577775 667888999999999999998865 4677778887764
No 72
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=35.36 E-value=34 Score=24.43 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=45.6
Q ss_pred CccCChHHHHHHHHHHHhc--------------CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHH
Q 031857 25 WLKISSQDVEDNICKFAKK--------------GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYH 90 (151)
Q Consensus 25 W~~~~~eeve~~Ivklakk--------------G~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~ 90 (151)
+.+.+++++.+.|.+..++ |=||+.+...+-+.+ +.|+-|+|.++--+|+.-... ..-.++-.
T Consensus 36 ~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~n~a~~~~~~~--~~v~vi~GvNlpmlle~~~~~-~~~~~l~e 112 (135)
T 1pdo_A 36 VPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDK--EHYEVIAGVNIPMLVETLMAR-DDDPSFDE 112 (135)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTTC--TTEEEEESCCHHHHHHHHHHH-TTCCCHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHhcc--CCEEEEeCCCHHHHHHHHHhc-ccCCCHHH
Confidence 4466788888888877664 468899988887764 589999999977555532111 01134445
Q ss_pred HHHHHHH
Q 031857 91 LIKKAVA 97 (151)
Q Consensus 91 LikKAv~ 97 (151)
+++.|+.
T Consensus 113 l~~~~~~ 119 (135)
T 1pdo_A 113 LVALAVE 119 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 73
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=35.22 E-value=67 Score=25.02 Aligned_cols=34 Identities=6% Similarity=0.244 Sum_probs=19.4
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
.|.=+..+.|+++..|.-|..-|+++.+|+.++.
T Consensus 65 ~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~ 98 (270)
T 3m66_A 65 NHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVR 98 (270)
T ss_dssp CTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChhhhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445555555555555555556666666665554
No 74
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=35.13 E-value=37 Score=23.02 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=19.2
Q ss_pred Hhhhc-cCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031857 53 ILRDS-HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (151)
Q Consensus 53 iLRD~-~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (151)
+|||+ +|||. -.|-+|.+..|. ..|.+|.+.-+..
T Consensus 3 ~~r~~~~~ip~------~~I~Riar~~Gv-~rIs~da~~~l~~ 38 (84)
T 2hue_C 3 VLRDNIQGITK------PAIRRLARRGGV-KRISGLIYEETRG 38 (84)
T ss_dssp CGGGGCCSSCH------HHHHHHHHHTTC-CEECTTHHHHHHH
T ss_pred cccccCCCCCH------HHHHHHHHHcCc-hhccHHHHHHHHH
Confidence 35665 45543 246777777775 4455555444333
No 75
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.99 E-value=98 Score=20.75 Aligned_cols=26 Identities=4% Similarity=0.110 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
++.++ ...|+.|.+.|.|.++|...|
T Consensus 7 ~s~~~-r~~i~~~~~~G~s~~~ia~~l 32 (141)
T 1u78_A 7 LSDTE-RAQLDVMKLLNVSLHEMSRKI 32 (141)
T ss_dssp CCHHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 45554 456777889999999999876
No 76
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=34.28 E-value=22 Score=26.83 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.3
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
++|.|||.++|.-|-.+|..|+
T Consensus 20 ~lt~eqI~kQI~Yll~qGw~p~ 41 (128)
T 1wdd_S 20 PLTVEDLLKQIEYLLRSKWVPC 41 (128)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeee
Confidence 4699999999999999999887
No 77
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.05 E-value=61 Score=27.21 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHH
Q 031857 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKA 95 (151)
..+.+++.|..|..-|+++..|+.+|+-.-.|=....-.=+.-...|++-|+.. +++..++.+.
T Consensus 74 l~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~---~~i~~ll~~~ 137 (335)
T 4fp9_B 74 SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE---GKLKRVLYCC 137 (335)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT---TTHHHHHHHC
T ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH---HHHHHHHHhC
Confidence 467888889999999999999999998874332211111122356788888763 5676666654
No 78
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=33.55 E-value=21 Score=26.18 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
.+|.+||.++|.-+-.+|..|+
T Consensus 19 ~lt~eqI~kQI~Yll~qGw~p~ 40 (109)
T 1rbl_M 19 PLSDRQIAAQIEYMIEQGFHPL 40 (109)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEE
Confidence 4699999999999999999875
No 79
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=33.53 E-value=69 Score=21.49 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=23.9
Q ss_pred hhHHHHHHHcCCCCCChhhHH------------HHHHHHHHHHHHHh
Q 031857 69 SKILRILKAHGLAPEIPEDLY------------HLIKKAVAIRKHLE 103 (151)
Q Consensus 69 ~ki~~ILk~nglap~iPEDL~------------~LikKAv~iRkHLe 103 (151)
-.|.+|.++.|+ +.++||.. .+++.|+.+-+|=.
T Consensus 10 ~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHak 55 (70)
T 1taf_B 10 ESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAK 55 (70)
T ss_dssp HHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457888999998 57887754 45667777766643
No 80
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=33.36 E-value=24 Score=25.87 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.0
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
.+|.+||.++|.-+-.+|..|+
T Consensus 21 ~lt~eqI~kQV~Yll~qGw~p~ 42 (110)
T 1svd_M 21 PMNAERIRAQIKYAIAQGWSPG 42 (110)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeeE
Confidence 4699999999999999999875
No 81
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.92 E-value=33 Score=24.68 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhhh
Q 031857 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILRD 56 (151)
Q Consensus 17 P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~iLRD 56 (151)
|..+..--+=.|+.++|+ ..|..|...|+|..+|..+|..
T Consensus 28 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 28 PPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNL 69 (135)
T ss_dssp CCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCccCCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 443444456668999988 4688899999999999988853
No 82
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=32.64 E-value=60 Score=28.53 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=32.0
Q ss_pred HHHHHHHHHH-hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031857 32 DVEDNICKFA-KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (151)
Q Consensus 32 eve~~Ivkla-kkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~i 84 (151)
.|.+.|.+|. ..|+.++.|++..|+..- ...|.+.|.++|+.-.+
T Consensus 326 ~va~~I~~l~~~~g~~~~diaVL~r~~~~--------~~~l~~~L~~~gIp~~~ 371 (673)
T 1uaa_A 326 RVTGELIAHHFVNKTQYKDYAILYRGNHQ--------SRVFEKFLMQNRIPYKI 371 (673)
T ss_dssp HHHHHHHHHHHHHCCCTTTEEEEESSSGG--------GTTHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhccCCCccCEEEEEechhh--------HHHHHHHHHHCCCCEEE
Confidence 3556677776 689999999999998531 24466777777765433
No 83
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=32.53 E-value=49 Score=27.07 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHc-C-C-CCCChhhHHHHHHHHH
Q 031857 32 DVEDNICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAH-G-L-APEIPEDLYHLIKKAV 96 (151)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~n-g-l-ap~iPEDL~~LikKAv 96 (151)
++.+.+.++|+ .|.||+|+-+.--=+++.. +-.|.|.+=.+-|++| + + ..+++++-+..|..+.
T Consensus 282 ~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v-~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i~~~~ 349 (353)
T 3erp_A 282 EKVRRLNELAARRGQKLSQMALAWVLRNDNV-TSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAIL 349 (353)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCC-CEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC-cEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 44556777775 6999999987654455421 1234454433333433 1 2 4688888888887765
No 84
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=32.53 E-value=44 Score=25.13 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 031857 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (151)
Q Consensus 32 eve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngla 81 (151)
+|...|.++..+|+|.++|...| || .-..+-++|+..+..
T Consensus 163 ~iv~~i~~~~~~G~s~~~Ia~~l----~i------s~~tv~r~l~~~~~~ 202 (209)
T 2r0q_C 163 VIYHRVVEMLEEGQAISKIAKEV----NI------TRQTVYRIKHDNGLS 202 (209)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH----TC------CHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH----Cc------CHHHHHHHHhccccc
Confidence 45678889999999999999988 43 345677787765543
No 85
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=32.38 E-value=59 Score=29.29 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCC--CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031857 33 VEDNICKFAKKGL--TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (151)
Q Consensus 33 ve~~IvklakkG~--~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (151)
+++.|-++.++|- =|-+.--.|-|.||.|.= =+..|++|+|+.-+.+ ....+|.+
T Consensus 364 l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~d------Lt~eia~e~g~~vD~~-gF~~~m~~ 420 (465)
T 1yfs_A 364 IQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD------LIDEIAREKGLGIDLE-GFQCELEE 420 (465)
T ss_dssp HHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHH------HHHHHHHTTTCEECHH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCHHHHHhhhhccCCCHH------HHHHHHHHcCCeeCHH-HHHHHHHH
Confidence 3444555555454 377888899999999952 1456889999999987 67766554
No 86
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=32.27 E-value=78 Score=24.82 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=13.5
Q ss_pred hHHHHHHHcCCCCCChhhHHHHHHH
Q 031857 70 KILRILKAHGLAPEIPEDLYHLIKK 94 (151)
Q Consensus 70 ki~~ILk~nglap~iPEDL~~LikK 94 (151)
.|.+.|+-. .+|+++..++..
T Consensus 150 ~V~~~l~l~----~l~~~v~~~l~~ 170 (230)
T 1vz0_A 150 TVANALRLL----QLPPEALEALER 170 (230)
T ss_dssp HHHHHHHGG----GSCHHHHHHHHT
T ss_pred HHHHHHHHH----cCCHHHHHHHHc
Confidence 455556554 678888877764
No 87
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=31.78 E-value=89 Score=25.21 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHh-cCCCc-chhhhHhhhccC---CCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHH
Q 031857 31 QDVEDNICKFAK-KGLTP-SQIGVILRDSHG---IAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV 96 (151)
Q Consensus 31 eeve~~Ivklak-kG~~p-SqIG~iLRD~~G---Ip~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv 96 (151)
.++.+.+.++|+ .|.|| +|+-..--=+++ +|.+..-+-..|.+.++.-+ .+++++-+.-|..+.
T Consensus 245 ~~~~~~l~~ia~~~g~t~~aqvaL~w~l~~~~~~~~I~G~~~~~~l~en~~a~~--~~Ls~ee~~~l~~~~ 313 (319)
T 1ur3_M 245 QPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAET--LKMTRQQWFRIRKAA 313 (319)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHTSTTCCEEEECCSCHHHHHHHHGGGG--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHh
Confidence 345567777775 69999 999876544543 23333333334444554434 468888777776653
No 88
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.24 E-value=33 Score=26.72 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=31.9
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031857 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (151)
Q Consensus 43 kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap 82 (151)
-|+|+|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 20 agVS~~TVSr~Ln~~---~~vs~~tr~rV~~~~~~lgY~p 56 (344)
T 3kjx_A 20 SGVSEMTVSRVLRNR---GDVSDATRARVLAAAKELGYVP 56 (344)
T ss_dssp HCCCSHHHHHHHTTC---SCCCHHHHHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCC
Confidence 499999999999876 6788999999999999988554
No 89
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=31.21 E-value=1.5e+02 Score=21.45 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCcCCCCCCCCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 1 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 1 M~Rmh~~~kG~S~S~~P~~~~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
||.-|-.---...=.-||......|. ++++|..+.-.-...- .+ .=| .|+|..+..+|...||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~W~-it~ee~~~y~~iF~~l--D~-~dG-------------~Isg~elr~~~~~sgL 63 (121)
T 3fia_A 1 MGHHHHHHSHVAQFPTPFGGSLDTWA-ITVEERAKHDQQFHSL--KP-ISG-------------FITGDQARNFFFQSGL 63 (121)
T ss_dssp ---------------CTTSCCTTTSC-CCHHHHHHHHHHHHHT--CC-BTT-------------BEEHHHHHHHHGGGCC
T ss_pred CCccccchhHHHhccccccCCCCCCC-CCHHHHHHHHHHHHHh--CC-CCC-------------eECHHHHHHHHHHcCC
Confidence 45444433334444567888888998 6888877643322221 11 111 5899999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 031857 81 APEIPEDLYHLIKKA 95 (151)
Q Consensus 81 ap~iPEDL~~LikKA 95 (151)
. .++|..++.-|
T Consensus 64 p---~~~L~~Iw~la 75 (121)
T 3fia_A 64 P---QPVLAQIWALA 75 (121)
T ss_dssp C---HHHHHHHHHHH
T ss_pred C---HHHHHHHHHHH
Confidence 5 55666665544
No 90
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=30.92 E-value=24 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
.+|.|||.++|.-|-.+|..|+
T Consensus 18 ~Lt~eqI~kQV~yll~qGw~~~ 39 (118)
T 3zxw_B 18 PLSDAQIARQIQYAIDQGYHPC 39 (118)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCeeE
Confidence 3589999999999999999775
No 91
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=30.72 E-value=46 Score=20.11 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=30.5
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 031857 26 LKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (151)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPE 86 (151)
-++++++|.+.+..|.+.| +|+.+-..+.- =+.+.+...+.|+-+.=|-
T Consensus 44 ~~it~~~i~~~~~~l~~~~-~~~t~~~~~~~-----------l~~~~~~a~~~~~i~~nP~ 92 (103)
T 2oxo_A 44 EDITTKEIAAMLNGYIDEG-KAASAKLIRST-----------LSDAFREAIAEGHITTNHV 92 (103)
T ss_dssp GGCCHHHHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHHHHTTSCSSCTT
T ss_pred hhCCHHHHHHHHHHHHHCC-CHHHHHHHHHH-----------HHHHHHHHHHcCCCCCChH
Confidence 4678999999999988777 67666544321 1234455555666444443
No 92
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=30.54 E-value=28 Score=26.73 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=20.2
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
++|.|||.++|--|-.+|..|+
T Consensus 20 ~lt~eqI~kQI~YlL~qGw~p~ 41 (140)
T 1gk8_I 20 PLTDEQIAAQVDYIVANGWIPC 41 (140)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEee
Confidence 4699999999999999999886
No 93
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=30.40 E-value=33 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
++. |....|+.|...|+|.++|...|
T Consensus 18 ~s~-~~r~~i~~~~~~g~s~~~ia~~l 43 (128)
T 1pdn_C 18 LPN-NIRLKIVEMAADGIRPCVISRQL 43 (128)
T ss_dssp CCH-HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 45667778888999999998776
No 94
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=30.30 E-value=47 Score=24.75 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=26.9
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
.+.++++++|.+.+..|.++|++|+-|-..+
T Consensus 43 ~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~ 73 (324)
T 1xo0_A 43 KWFPAEPEDVRDYLLYLQARGLAVKTIQQHL 73 (324)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCcCHHHHHHHH
Confidence 4678899999999999999999999887654
No 95
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.12 E-value=46 Score=19.41 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 30 SQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 30 ~eeve~~IvklakkG~~pSqIG~iL 54 (151)
+++ .+.|..|...|+|..+|+..|
T Consensus 18 ~~~-~~~i~~l~~~g~s~~eIA~~l 41 (55)
T 2x48_A 18 DDL-VSVAHELAKMGYTVQQIANAL 41 (55)
T ss_dssp HHH-HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHH-HHHHHHHHHcCCCHHHHHHHH
Confidence 444 456677788999999998765
No 96
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.79 E-value=71 Score=25.26 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHhcCCCc---chhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhH
Q 031857 28 ISSQDVEDNICKFAKKGLTP---SQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER 104 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~p---SqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~iRkHLe~ 104 (151)
.+.||+++.|-+|.++|+.- ..+...+=.++|+|.|-.-. .|-+..-+..|+.+-+-..+
T Consensus 138 ~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vlI~s-----------------~eSI~~Ai~eA~~l~~~~r~ 200 (225)
T 2pju_A 138 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS-----------------AATVRQAFSDALDMTRMSLR 200 (225)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEESSC-----------------HHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEEECC-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999764 12223344456666554322 35555556666666444333
No 97
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.74 E-value=34 Score=20.25 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCCcchhhhHh
Q 031857 34 EDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 34 e~~IvklakkG~~pSqIG~iL 54 (151)
+..|+.|.-.|+|..+|+..|
T Consensus 3 e~~vl~l~~~g~s~~eIA~~l 23 (61)
T 2jpc_A 3 ERQVLKLIDEGYTNHGISEKL 23 (61)
T ss_dssp HHHHHHHHHTSCCSHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 456777778899999999877
No 98
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=29.42 E-value=62 Score=30.52 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=34.8
Q ss_pred CcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHH
Q 031857 46 TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKK 94 (151)
Q Consensus 46 ~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikK 94 (151)
=|-..-..|-|.||+|.= =+..|++|+|+.-++|++.+.+|.+
T Consensus 440 l~g~~af~LyDTyGfP~d------lt~~ia~e~g~~vd~~~~F~~~m~~ 482 (739)
T 2ztg_A 440 LEKDDLIELYDSHGIPVE------LAVGIAAEKGAEVEMPKDIYAELAK 482 (739)
T ss_dssp CCHHHHHHHHHHHCCCHH------HHHHHHHHTTCBCCCCTTHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCHH------HHHHHHHHcCCeeCCcccHHHHHHH
Confidence 566778889999999952 1456889999999999999877754
No 99
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=29.32 E-value=1e+02 Score=23.53 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=35.1
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhHcCCcccchhHHH-HHHHHHHHHHHHHHhc
Q 031857 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLI-LVESRIHRLARYYKKT 132 (151)
Q Consensus 67 tG~ki~~ILk~nglap~iPEDL~~LikKAv~iRkHLe~n~kD~~~k~~L~-LiESkI~RL~rYYk~~ 132 (151)
+-....+.|+.+|+. |+++...|++-+.+++-++..-++ ... .+|.-| -.||...
T Consensus 71 s~~~~~~~L~~~g~t---~~~~~~~ir~~l~~~~l~~~~~~~-----~v~vvtd~ei---~~yy~~~ 126 (252)
T 3rgc_A 71 TLNAFKANLKSKNQS---YEQFRTNFKKDLEKRKLYEKIASM-----AKTDFSDDGA---KKFFEQN 126 (252)
T ss_dssp CHHHHHHHTCC---C---HHHHHHHHHHHHHHHHHHHHHHTT-----SCCCCCHHHH---HHHHHTC
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHhc-----cCccCCHHHH---HHHHHhC
Confidence 445688899999986 789999999988888877654221 111 245554 4788764
No 100
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=29.27 E-value=31 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=18.9
Q ss_pred ccCChHHHHHHHHHHHh-cCCCcchh
Q 031857 26 LKISSQDVEDNICKFAK-KGLTPSQI 50 (151)
Q Consensus 26 ~~~~~eeve~~Ivklak-kG~~pSqI 50 (151)
+..|.+||.+.|.++|. -|++|.++
T Consensus 107 I~vsdeev~~~i~~~A~~y~~~~~~~ 132 (170)
T 2nsa_A 107 ISVNDEELEKEAEELAPFWGISPDRA 132 (170)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHH
Confidence 56788999999998886 36666654
No 101
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=29.21 E-value=31 Score=22.45 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=27.3
Q ss_pred CccCChHHHH--HHHHHHH-hcCCCcchhhhHhhhc
Q 031857 25 WLKISSQDVE--DNICKFA-KKGLTPSQIGVILRDS 57 (151)
Q Consensus 25 W~~~~~eeve--~~Ivkla-kkG~~pSqIG~iLRD~ 57 (151)
.-.++.++|+ ..|..|. +.|+|..+|-.+|...
T Consensus 42 ~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~ 77 (81)
T 2jml_A 42 YRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTE 77 (81)
T ss_dssp SCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHS
T ss_pred eeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHcc
Confidence 3447999997 4689999 8999999999988764
No 102
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=28.82 E-value=60 Score=25.78 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccC------CCceeeecchhHHHHHHH
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHG------IAQVKSVTGSKILRILKA 77 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iLRD~~G------Ip~Vk~vtG~ki~~ILk~ 77 (151)
++.+++.++.......|.+|.++-...-.+++ ++.|+.+.|..-.+++++
T Consensus 232 ~~~~~~~~l~~~v~~~~~~~~~vA~~wl~~~~~~~~~wl~~~~~~~g~~~~~~~~~ 287 (298)
T 2rin_A 232 FSLQMENEIMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAVKA 287 (298)
T ss_dssp CCHHHHHHHHHHHHTTCCCHHHHHHHHHHHSGGGHHHHTTTCBCTTSSBHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHCHHHHHHHhcCCcCCCCCcHHHHHHH
Confidence 46677777777777789999998887666665 567777777777666654
No 103
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=28.74 E-value=65 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=14.9
Q ss_pred CCccCChHHHHHHHHHHHh-cCCCcchhhhHh
Q 031857 24 SWLKISSQDVEDNICKFAK-KGLTPSQIGVIL 54 (151)
Q Consensus 24 ~W~~~~~eeve~~Ivklak-kG~~pSqIG~iL 54 (151)
.|-......+-+.|.++.+ .|+|..+++..+
T Consensus 10 ~~~~~~~~~~~~~l~~~r~~~glsq~elA~~~ 41 (83)
T 2a6c_A 10 HHHMKMRSQLLIVLQEHLRNSGLTQFKAAELL 41 (83)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCccccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333334445455544433 566665555443
No 104
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=28.58 E-value=13 Score=27.00 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=37.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhhhcc---------------CCCceeeecchhHHHHHHHcCCCCCChhhHHHH
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILRDSH---------------GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHL 91 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLRD~~---------------GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~L 91 (151)
-.++||+++.+-+|++. .||+++-+++ -.|.|=.|-++. |-...-.+.+..+
T Consensus 27 v~~~ee~~~~~~~l~~~-----digIIlIte~ia~~i~~~i~~~~~~~~P~IveIPs~~--------g~~~~~~~~i~~~ 93 (115)
T 3aon_B 27 GTTKTEIRKTIDEMAKN-----EYGVIYITEQCANLVPETIERYKGQLTPAIILIPSHQ--------GTLGIGLEEIQNS 93 (115)
T ss_dssp CCSHHHHHHHHHHHHHT-----TEEEEEEEHHHHTTCHHHHHHHHTSSSCEEEEECBTT--------BCCSHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHhc-----CceEEEEeHHHHHHhHHHHHHHhCCCCCEEEEECCCC--------CCCCccHHHHHHH
Confidence 36899999999999985 6888776654 234443333333 1111134568888
Q ss_pred HHHHHHH
Q 031857 92 IKKAVAI 98 (151)
Q Consensus 92 ikKAv~i 98 (151)
+++|+.+
T Consensus 94 V~~aiG~ 100 (115)
T 3aon_B 94 VEKAVGQ 100 (115)
T ss_dssp HHHHTTC
T ss_pred HHHHhCc
Confidence 8888764
No 105
>2odi_A R.BCNI; endonuclease-DNA complex, restriction enzyme, hydrolas complex; HET: MSE; 1.45A {Brevibacillus centrosporus} PDB: 2odh_A* 2q10_A* 3imb_A
Probab=28.07 E-value=44 Score=27.35 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHhcCCC--cc--------hhhhHhhhccCCC
Q 031857 28 ISSQDVEDNICKFAKKGLT--PS--------QIGVILRDSHGIA 61 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~--pS--------qIG~iLRD~~GIp 61 (151)
++.+|+.+.+-+.+.+|.- || -||..|-|..||+
T Consensus 4 ~~k~~Li~~l~~I~~~G~i~~~s~~~r~~~~gvG~TLE~lLGI~ 47 (238)
T 2odi_A 4 WSKEEVVNKLHEIKNKGYLSVPTDMFRTDDGVVGQILERQFGVQ 47 (238)
T ss_dssp CCHHHHHHHHHHHHHTCSEECCTTTCSSCTTHHHHHHHHHTTCC
T ss_pred eeHHHHHHHHHHHHHCCCeecCcccccCCCCcHHHHHHHHhCCC
Confidence 5889999999999999999 88 4999999999996
No 106
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=27.93 E-value=77 Score=22.78 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=44.5
Q ss_pred cCChHHHHHHHHHHHhc-------------CCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHH
Q 031857 27 KISSQDVEDNICKFAKK-------------GLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIK 93 (151)
Q Consensus 27 ~~~~eeve~~Ivklakk-------------G~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~Lik 93 (151)
..+++++.+.|.+..++ |=||+.+...+-+.+ +.|+-|+|.++-=+|+.-.. . =.+|-.++.
T Consensus 42 ~~~~~~~~~~i~~~i~~~~~~gvliLtDl~GGSp~n~a~~~~~~~--~~v~vi~GvNlpmlle~~~~-~--~~~l~el~~ 116 (142)
T 3bed_A 42 EDGLSGTQAKLAAILKEAGNVPTLVLADLXGGTPCNVAMMAMGTY--PQLRVVAGLNLAMAIEAAVS-P--VENVDELAA 116 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHCSCCEEEEESSTTSHHHHHHHHHTTTC--TTEEEEESCCHHHHHHHHHC-C--CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEECCCCHHHHHHHHHhccC--CCEEEEeCCCHHHHHHHHHc-c--CCCHHHHHH
Confidence 44566666666665543 678999988887765 58999999998777665432 1 234555666
Q ss_pred HHHHH
Q 031857 94 KAVAI 98 (151)
Q Consensus 94 KAv~i 98 (151)
.|+..
T Consensus 117 ~~~~~ 121 (142)
T 3bed_A 117 YLTQI 121 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 107
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=27.87 E-value=89 Score=26.95 Aligned_cols=75 Identities=7% Similarity=0.114 Sum_probs=42.9
Q ss_pred hHHHHHHHcCCCCCC---------hhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHH-HHHHhcCCCCCCC
Q 031857 70 KILRILKAHGLAPEI---------PEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA-RYYKKTKKLPPVW 139 (151)
Q Consensus 70 ki~~ILk~nglap~i---------PEDL~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~-rYYk~~~~LP~~W 139 (151)
.|.+++++-|+...+ .||+..+.++|..-...+..|+++.+..-=..+++.= ..+. +|-.+.+ +|+.|
T Consensus 357 ~i~~l~~~lglP~~L~elgi~~~~~~~l~~~a~~a~~~~~~~~~~p~~~t~edi~~il~~a-~~~g~~~~~~~~-~~~~~ 434 (450)
T 1ta9_A 357 NLASFMAKCHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQIADAIKAV-DSYSQKWQEQTG-WTERF 434 (450)
T ss_dssp HHHHHHHHTTCCCSHHHHTCTTCCHHHHHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHH-HHHHHHHHHHHT-CCCCC
T ss_pred HHHHHHHHcCCCCCHHHcCCCCCcHHHHHHHHHHHhhCcccccCCCCCCCHHHHHHHHHHH-HHhCchhhhhcC-Ccccc
Confidence 455556666655333 5688888888875444454457777644333333322 2233 3334444 88888
Q ss_pred ccchhhh
Q 031857 140 KYESTTA 146 (151)
Q Consensus 140 kY~~~~A 146 (151)
+..|+.-
T Consensus 435 ~~~~~~~ 441 (450)
T 1ta9_A 435 RLPPSRH 441 (450)
T ss_dssp CCCSSTT
T ss_pred cCCcccC
Confidence 8777643
No 108
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.70 E-value=34 Score=22.95 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 81 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngla 81 (151)
..+....+|+.|. .|+.|..+|+|..+|+..|-=+. -.| -.-+.++++.-|+.
T Consensus 23 ~~~~~~~Lt~rE~--~Vl~l~~~G~s~~eIA~~L~iS~--~TV----~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 23 SQKEQDVLTPREC--LILQEVEKGFTNQEIADALHLSK--RSI----EYSLTSIFNKLNVG 75 (90)
T ss_dssp ------CCCHHHH--HHHHHHHTTCCHHHHHHHHTCCH--HHH----HHHHHHHHHHTTCS
T ss_pred ccccccCCCHHHH--HHHHHHHcCCCHHHHHHHHCcCH--HHH----HHHHHHHHHHHCCC
Confidence 3344556676655 57778889999999999885322 111 23466677777764
No 109
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=27.08 E-value=52 Score=21.53 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=31.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChh
Q 031857 26 LKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPE 86 (151)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPE 86 (151)
-++++.+|.+.+..|.++| +|+.+..++. .=+.+.+...+.|+-+.=|-
T Consensus 48 ~~It~~~i~~~~~~l~~~~-s~~t~~~~~~-----------~l~~~~~~Av~~~~i~~NP~ 96 (118)
T 2kj8_A 48 QDIEPMQLLEVIRRFEDRG-AMERANKARR-----------RCGEVFRYAIVTGRAKYNPA 96 (118)
T ss_dssp TSCCHHHHHHHHHHHHTTT-CHHHHHHHHH-----------HHHHHHHHHHHTTSCSCCSH
T ss_pred HHCCHHHHHHHHHHHHHcC-CHHHHHHHHH-----------HHHHHHHHHHHcCCcccCcH
Confidence 4678888888888888777 6766655442 11235555667787655553
No 110
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=26.96 E-value=42 Score=28.04 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=24.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 12 ~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~ 40 (329)
T 2elc_A 12 VLEEEEAYEVMRALMAGEVSPVRAAGLLV 40 (329)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 57899999999999988899999997663
No 111
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=26.87 E-value=35 Score=26.03 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
++|.+||.++|.-|-.+|..|+
T Consensus 13 ~ltdeqI~kQI~Yll~qGw~p~ 34 (138)
T 1bwv_S 13 DLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeee
Confidence 4699999999999999999875
No 112
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=26.25 E-value=54 Score=26.75 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=43.5
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCce--eeecchh---HHHHHHHcCCCCCChhhHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV--KSVTGSK---ILRILKAHGLAPEIPEDLYHLIKKA 95 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~V--k~vtG~k---i~~ILk~nglap~iPEDL~~LikKA 95 (151)
.-|..+..+++++...+.-|..-|+++++|+.++... |.+ ....... -..+|++-|+.. +|+..++.++
T Consensus 74 ~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~---P~iLl~s~~~~~l~p~v~fL~~lGl~~---~~i~~ll~~~ 147 (343)
T 3mva_O 74 RYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERS---PESFFRSNNNLNLENNIKFLYSVGLTR---KCLCRLLTNA 147 (343)
T ss_dssp HCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHC---SHHHHSCCCHHHHHHHHHHHHHTTCCH---HHHHHHHHHC
T ss_pred hCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHC---CHHHhCCChHhhHHHHHHHHHHhCCCH---HHHHHHHHhC
Confidence 3477777777777777777777888888888777644 431 1111112 236777777653 5666666555
No 113
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}
Probab=26.09 E-value=11 Score=29.03 Aligned_cols=42 Identities=10% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeec
Q 031857 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVT 67 (151)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vt 67 (151)
+|+....-|..|.+-+|-+.|+-|+-|.+. |.-|+|+|-.+.
T Consensus 9 ~~~~~~~~~~~~~~r~l~~~~v~~~~LATA--dkdG~PNVa~~~ 50 (148)
T 3in6_A 9 EWLEIMDRELLEKARSLINANYISTTLSTV--DRNYEVNIAVIS 50 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSEEEEEE--CTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcceEEEEEc--CCCCCccEEEEe
Confidence 699999999999999999999888888775 788999998654
No 114
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=25.90 E-value=77 Score=19.10 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHh-cCCCcchhhhH
Q 031857 31 QDVEDNICKFAK-KGLTPSQIGVI 53 (151)
Q Consensus 31 eeve~~Ivklak-kG~~pSqIG~i 53 (151)
+++-+.|.++.+ +|+|..+++..
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~ 29 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATL 29 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344444444433 56665555443
No 115
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=25.78 E-value=65 Score=26.05 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCccCChHHHHHHHHHHHhc-CCCcchhhhHhhhccCCC
Q 031857 24 SWLKISSQDVEDNICKFAKK-GLTPSQIGVILRDSHGIA 61 (151)
Q Consensus 24 ~W~~~~~eeve~~Ivklakk-G~~pSqIG~iLRD~~GIp 61 (151)
..+.-|+|+|++.|.++.+. |- . |.||=..||||
T Consensus 299 ~~l~~~~e~i~~~v~~~l~~~~~---~-g~I~~~g~gi~ 333 (353)
T 1j93_A 299 GVLFGSKEFITNRINDTVKKAGK---G-KHILNLGHGIK 333 (353)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHCS---S-SEEBCBSSCCC
T ss_pred HHHcCCHHHHHHHHHHHHHHhCC---C-CEEEeCCCCCC
Confidence 34445888888888888776 52 2 78888888887
No 116
>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=25.76 E-value=29 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCce
Q 031857 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV 63 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~V 63 (151)
+.+|+...--+|+..|=+..+-| .|+|.|||.=.
T Consensus 86 d~~e~d~~~~~L~~~Gg~v~~~G-~v~D~fGv~W~ 119 (163)
T 1u69_A 86 DQAETDRLWNAIVDNGGEESACG-WCRDKWGISWQ 119 (163)
T ss_dssp SHHHHHHHHHHHHHTTCEECSTT-EEECTTSCEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEEE-EEECCCCCEEE
Confidence 57889998999986676777788 79999998643
No 117
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=25.74 E-value=19 Score=26.04 Aligned_cols=55 Identities=11% Similarity=0.275 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCCcchhhhHhhhc-----------cCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q 031857 31 QDVEDNICKFAKKGLTPSQIGVILRDS-----------HGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAI 98 (151)
Q Consensus 31 eeve~~IvklakkG~~pSqIG~iLRD~-----------~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~i 98 (151)
+|+++.+-+|++.. .||++|-+| --+|.|=.|-++. |-.. -.+.+..++++|+++
T Consensus 34 ee~~~~~~~l~~~~----digIIlIte~ia~~i~~~~~i~~P~IleIPs~~--------g~~~-~~d~i~~~V~~aiG~ 99 (111)
T 2qai_A 34 ERARNKLRELLERD----DVGIILITERLAQRIGSLPEVKFPIILQIPDKF--------GSIY-GEDILRDVVRRAIGV 99 (111)
T ss_dssp HHHHHHHHHHHTCT----TEEEEEEEHHHHHHHCSCCCCSSSEEEEECTTC---------------CTHHHHHHHHC--
T ss_pred HHHHHHHHHHhhCC----CeEEEEEcHHHHhhcccccccCCCEEEEECCCC--------CCCc-hHHHHHHHHHHHhCh
Confidence 99999999999863 566655433 2277777777766 2111 236789999999886
No 118
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.58 E-value=94 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHhcCCCc---chhhhHhhhccCCCceeeecc
Q 031857 29 SSQDVEDNICKFAKKGLTP---SQIGVILRDSHGIAQVKSVTG 68 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~p---SqIG~iLRD~~GIp~Vk~vtG 68 (151)
+.+|+++.|-+|.++|+.- ..+...+=.++|+|.|-.-+|
T Consensus 127 ~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~sg 169 (196)
T 2q5c_A 127 SEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINSG 169 (196)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECCCC
T ss_pred CHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEecC
Confidence 6899999999999999875 223344556677777765554
No 119
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.42 E-value=1.1e+02 Score=18.95 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcC
Q 031857 39 KFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHG 79 (151)
Q Consensus 39 klak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ng 79 (151)
+||+ -|++++.|..+.+... +| +.. +.+|.+.-|
T Consensus 16 ~lA~~lgvs~~~is~~e~g~~-~p-~~~-----l~~ia~~l~ 50 (79)
T 3bd1_A 16 ALAASLGVRQSAISNWRARGR-VP-AER-----CIDIERVTN 50 (79)
T ss_dssp HHHHHHTCCHHHHHHHHHHTC-CC-GGG-----HHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHCCC-CC-HHH-----HHHHHHHHC
Confidence 4443 4889999988888766 77 543 555555555
No 120
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=25.42 E-value=2e+02 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=20.5
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q 031857 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRK 100 (151)
Q Consensus 67 tG~ki~~ILk~nglap~iPEDL~~LikKAv~iRk 100 (151)
+-..+.+.|+.+|+. |+++...|++-+-+.+
T Consensus 90 ~~~~~~~~L~~~g~t---~~~~~~~~r~~l~~~~ 120 (408)
T 1m5y_A 90 TLDQMRSRLAYDGLN---YNTYRNQIRKEMIISE 120 (408)
T ss_dssp CHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHH
Confidence 445578888899975 5677766666554443
No 121
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=25.30 E-value=47 Score=27.99 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=25.5
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
++|.||..+.+-.+..--+||.|||-.|-
T Consensus 15 ~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~ 43 (345)
T 1o17_A 15 DLEINEAEELAKAIIRGEVPEILVSAILV 43 (345)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 57999999999999998899999998764
No 122
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=25.28 E-value=48 Score=26.38 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=20.0
Q ss_pred CCCCCccCChHHHHHHHHHHHhcCCC
Q 031857 21 TPPSWLKISSQDVEDNICKFAKKGLT 46 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~IvklakkG~~ 46 (151)
..+.|...+.+|+.+.|++++++|..
T Consensus 69 k~~~~~~~~~~~i~~~l~~~~~~G~~ 94 (280)
T 1s4d_A 69 KRGGKPSPKQRDISLRLVELARAGNR 94 (280)
T ss_dssp CCC--CCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccccccCHHHHHHHHHHHHhCCCe
Confidence 34567778899999999999999854
No 123
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=25.26 E-value=54 Score=25.92 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=34.5
Q ss_pred CCCCccC-ChHHHHHHHHHHHhcCCCcchhhhH---hhhccCCCc
Q 031857 22 PPSWLKI-SSQDVEDNICKFAKKGLTPSQIGVI---LRDSHGIAQ 62 (151)
Q Consensus 22 ~P~W~~~-~~eeve~~IvklakkG~~pSqIG~i---LRD~~GIp~ 62 (151)
.|..+++ |.+|+.+.|-+.-..-+.|||+-+. |.|.-||-.
T Consensus 34 l~~FF~~~st~e~~~kv~eii~~~~e~s~~~~Lv~~l~~e~Gi~~ 78 (168)
T 3cz6_A 34 LPLFFHFGSTRQFMDKLHEVISGDYEPSQAEKLVQDLCDETGIRK 78 (168)
T ss_dssp CGGGGGCSSHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHCBCH
T ss_pred HHHHHccCCHHHHHHHHHHHHhcccChhhHHHHHHHHHHHhCccc
Confidence 3788999 9999999999999999999999875 455677653
No 124
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=25.26 E-value=39 Score=27.60 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 32 eve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
.+...|.=|..-|++.++||..+.-.-.|=....-.-+...+.|++-|+
T Consensus 122 ~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv 170 (343)
T 3mva_O 122 NLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGL 170 (343)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCC
Confidence 5666666677777777777777765532222221111335556666654
No 125
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=25.08 E-value=31 Score=23.90 Aligned_cols=46 Identities=13% Similarity=-0.025 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031857 32 DVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (151)
Q Consensus 32 eve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap 82 (151)
+|-+.|.+ ..++|.++|...|.... .+..-|=..+++.|+++|+--
T Consensus 39 ~VL~~L~~--~~~~t~~eL~~~l~~~~---~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 39 IVMRVIWS--LGEARVDEIYAQIPQEL---EWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp HHHHHHHH--HSCEEHHHHHHTCCGGG---CCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHh--CCCCCHHHHHHHHhccc---CCCHhhHHHHHHHHHHCCCEE
Confidence 45555554 56889999998887652 334444456888899999754
No 126
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=25.06 E-value=72 Score=21.98 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031857 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap 82 (151)
+.+|..+.|++++++|.+-+.+= ..|.|.+-. +|..+.+.+.+.|+.-
T Consensus 64 ~~~~~~~~i~~~~~~G~~V~~l~-----d~GdP~i~~-~~~~l~~~~~~~gi~v 111 (117)
T 3hh1_A 64 NEERAVRQVIELLEEGSDVALVT-----DAGTPAISD-PGYTMASAAHAAGLPV 111 (117)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEE-----ETTSCGGGS-TTHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHCCCeEEEEe-----cCCcCeEec-cHHHHHHHHHHCCCcE
Confidence 45688889999999997633221 479999966 8999999999988753
No 127
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=24.92 E-value=48 Score=27.72 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=22.8
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
++|.||..+.+-.+..--+++.|||-.|-
T Consensus 18 ~Lt~eEa~~~~~~il~G~~~d~QiaAfL~ 46 (346)
T 4hkm_A 18 EIFHDEMVDLMRQIMRGEVSDAMVSAILT 46 (346)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46788888888888888888888887653
No 128
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=24.85 E-value=73 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH
Q 031857 22 PPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA 77 (151)
Q Consensus 22 ~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ 77 (151)
.|..+. +..+...++..|.+.|+|..+|-. +.|.+.+|+|++
T Consensus 295 ~p~gl~-d~~~~p~l~~~L~~~G~se~~i~k-------------i~g~N~lRvl~~ 336 (369)
T 1itu_A 295 VPEGLE-DVSKYPDLIAELLRRNWTEAEVKG-------------ALADNLLRVFEA 336 (369)
T ss_dssp CCBTCS-STTCHHHHHHHHHHTTCCHHHHHH-------------HHTHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHcCCCHHHHHH-------------HHhHhHHHHHHH
Confidence 344443 456777888888888888877644 556666777665
No 129
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=24.80 E-value=15 Score=27.25 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCC
Q 031857 29 SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 29 ~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
++++ .+.|.+|..+|+|.++|...| || .-..+-++|++.+-
T Consensus 144 ~~~~-~~~i~~l~~~G~s~~~Ia~~l----~v------s~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 144 TKAE-WEQAGRLLAQGIPRKQVALIY----DV------ALSTLYKKHPAKRA 184 (193)
T ss_dssp ----------------------------------------------------
T ss_pred CHHH-HHHHHHHHHcCCCHHHHHHHH----Cc------CHHHHHHHHHHhhh
Confidence 4444 456888999999999999888 33 23345667776653
No 130
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.72 E-value=51 Score=21.45 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhh
Q 031857 33 VEDNICKFAKKGLTPSQIGVILRD 56 (151)
Q Consensus 33 ve~~IvklakkG~~pSqIG~iLRD 56 (151)
+++.|.=|-.||+|..+|-..|+-
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 567888899999999999888763
No 131
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=24.70 E-value=56 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=21.8
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
-+++.++|.+.+..|.++| +|+.+-.++
T Consensus 49 ~~it~~~i~~~~~~l~~~~-s~~t~~~~~ 76 (116)
T 2kj5_A 49 EDVKPRHIDDVLKAVMKRG-APSIANDTL 76 (116)
T ss_dssp SSCCHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHcc-ChHHHHHHH
Confidence 4578999999999998877 777665544
No 132
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Probab=24.66 E-value=50 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCC-----------CCCCCccchhhhh
Q 031857 115 LILVESRIHRLARYYKKTKK-----------LPPVWKYESTTAS 147 (151)
Q Consensus 115 L~LiESkI~RL~rYYk~~~~-----------LP~~WkY~~~~A~ 147 (151)
+.+=|.+|.|+.++|++.+. |-|+|+|++..-.
T Consensus 418 velD~d~l~kyh~~y~~~~~~~r~d~~~m~~~~~~~~~~~~~~~ 461 (464)
T 4g8t_A 418 VELDMDQVMKANELYKSMGLGARDDAMAMQFLIPGWKFDNKKPC 461 (464)
T ss_dssp CCBCHHHHHHHHHHHHHTTCCSCCSHHHHTTTSTTCCCCTTSCT
T ss_pred eEECHHHHHHHhHHHHhcCCCccchHHHHhhcCCCCccCCCCCC
Confidence 45668899999999998763 6789999887543
No 133
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=24.64 E-value=1.6e+02 Score=20.75 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=39.3
Q ss_pred ChhhHHHHHHHHHHHHHHHhHcCCcccchhH-HHHHHHHHHHHHHHHHh
Q 031857 84 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFR-LILVESRIHRLARYYKK 131 (151)
Q Consensus 84 iPEDL~~LikKAv~iRkHLe~n~kD~~~k~~-L~LiESkI~RL~rYYk~ 131 (151)
=++.|..|-.++..+|=+|.++=.+..+|+. |.-.-.||--.+|+|-+
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~ 79 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDR 79 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988886 33344788888888864
No 134
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.62 E-value=49 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=23.6
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031857 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (151)
Q Consensus 43 kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap 82 (151)
-|+|+|-+-..|.+. |.|..-|-.+|.++.++-|-.|
T Consensus 12 agVS~~TVSrvln~~---~~vs~~tr~rV~~aa~~lgY~p 48 (332)
T 2hsg_A 12 ASVSMATVSRVVNGN---PNVKPSTRKKVLETIERLGYRP 48 (332)
T ss_dssp TTSCHHHHHHHHTTC---TTSCHHHHHHHHHHHHHHTCCS
T ss_pred hCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHHCCCc
Confidence 377777777777654 3466666667766666666544
No 135
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=24.58 E-value=49 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
++|.||+++.+-.+..--+||.|||-.|-
T Consensus 39 ~Lt~eEa~~~~~~il~G~~~~~QiaAfL~ 67 (374)
T 1vqu_A 39 SLSRSQAAELMQGWLSEAVPPELSGAILT 67 (374)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47999999999999999999999998764
No 136
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=24.56 E-value=61 Score=23.61 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=22.7
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchhhhHhhh
Q 031857 27 KISSQDVEDNICKFAKKG-LTPSQIGVILRD 56 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG-~~pSqIG~iLRD 56 (151)
.+|.|||.+.+..|..+| .++..||+.+-+
T Consensus 38 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~ 68 (103)
T 2kvc_A 38 RLSHDEVKAVANELMRLGDFDQIDIGVVITH 68 (103)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCSSCHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 479999999999999987 455556655443
No 137
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=24.33 E-value=54 Score=25.79 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=39.1
Q ss_pred ccCChHHHHHHHHHHH--------hcCCCcchhhhHhhhccCCCceeeecchhHHHHHH
Q 031857 26 LKISSQDVEDNICKFA--------KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILK 76 (151)
Q Consensus 26 ~~~~~eeve~~Ivkla--------kkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk 76 (151)
+.+|+|||++.|.++- +++|. .+|.+|-+--..|..|...|+.+-.++.
T Consensus 115 V~VT~EqI~~~V~~~i~~~k~~i~~~RY~--~~g~ll~~vr~~p~LkWAd~~~vK~~vD 171 (187)
T 3tl4_X 115 IEITEDQVRNYVMQYIQENKERILTERYK--LVPGIFADVKNLKELKWADPRSFKPIID 171 (187)
T ss_dssp CCCCHHHHHHHHHHHHHHTHHHHHHHGGG--GHHHHHHHHHTCGGGTTSCTTSHHHHHH
T ss_pred eEeCHHHHHHHHHHHHHHhHHHHHHhccc--cHHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 5679999999887765 55777 7899998888889998888888766554
No 138
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=24.29 E-value=65 Score=20.40 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=21.3
Q ss_pred ccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 26 LKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
-++++++|.+.+..|. +|++|+.+...+
T Consensus 42 ~~It~~~i~~~~~~l~-~~~s~~t~~~~~ 69 (111)
T 2kiw_A 42 QTIKKHDYQRFVDDIS-AQYSKNYVDSIV 69 (111)
T ss_dssp GGCCHHHHHHHHHHHH-TTSCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHH-hhhCHHHHHHHH
Confidence 4678899999888886 478888776654
No 139
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=24.21 E-value=26 Score=22.28 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=27.6
Q ss_pred hcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCC
Q 031857 42 KKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 82 (151)
Q Consensus 42 kkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap 82 (151)
..+.|.++|...|... +.+..-|=..+++.|+++|+--
T Consensus 21 ~~~~t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 21 HSSINTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp SSSEEHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeE
Confidence 4578899999988764 3344555566888899999753
No 140
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=24.11 E-value=43 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
++|.+||.++|.-|-.+|..|+
T Consensus 13 ~ltd~qI~kQI~YlL~qGw~~~ 34 (138)
T 4f0h_B 13 DLTDEQIKKQIDYMISKKLAIG 34 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEE
Confidence 4699999999999999999875
No 141
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=24.09 E-value=37 Score=20.04 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHh-cCCCcchhh
Q 031857 30 SQDVEDNICKFAK-KGLTPSQIG 51 (151)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqIG 51 (151)
++|+.+.+..+|+ .|+|.|++=
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~i 39 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVC 39 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHH
Confidence 4566667777775 899988853
No 142
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=23.99 E-value=25 Score=24.62 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.2
Q ss_pred CCCccCChHHHHHHHHHHHhcCCCcc----hhhhHhhhccC
Q 031857 23 PSWLKISSQDVEDNICKFAKKGLTPS----QIGVILRDSHG 59 (151)
Q Consensus 23 P~W~~~~~eeve~~IvklakkG~~pS----qIG~iLRD~~G 59 (151)
|+-..-+|||=-++-++||+.|+... +|-..||..|+
T Consensus 7 ptL~T~TPeeG~~LAvklaR~~vk~tQPd~evr~~lR~~Ya 47 (76)
T 2oyy_A 7 PTLVTATPQEGFDLAVKLSRIAVKKTQPDAQVRDTLRAVYE 47 (76)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred hhhhcCChHHHHHHHHHHHHHHHhccCCCHHHHHHHhHHhh
Confidence 34445599999999999999987544 46677777775
No 143
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=23.89 E-value=1.6e+02 Score=24.45 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHhH-cC
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER-NR 106 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~iPEDL~~LikKAv~iRkHLe~-n~ 106 (151)
.+..+|++.+-+++=+|+.|. .|.++|++.| ..|...=+++.+-|+ |.+ |+
T Consensus 16 ~d~~~i~~~v~~faYqGFDa~---------------------~ii~~lke~G-----g~~w~~D~k~mIVl~--LtRGNk 67 (245)
T 3ov9_A 16 VDRNEIEQWVREFAYQGFDAR---------------------RVIELLKQYG-----GADWEKDAKKMIVLA--LTRGNK 67 (245)
T ss_dssp CCHHHHHHHHHHHSBCSCCHH---------------------HHHHHHHHHH-----GGGHHHHHHHHHHHH--HHTCSC
T ss_pred ccHHHHHHHHHHHHhcCCCHH---------------------HHHHHHHHHc-----chhHHHHHHHHHHHH--HhhCCC
Confidence 477899999999999999995 4567778887 333443344443333 222 22
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 031857 107 KDKDSKFRLILVESRIHRLARYYKKTKKLPPV 138 (151)
Q Consensus 107 kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~ 138 (151)
-++-.|+--.---..+.+|+.-|+=+-.-|.+
T Consensus 68 ~~km~kkms~eGk~~v~~Li~~Y~L~~~~~~r 99 (245)
T 3ov9_A 68 PRRMMMKMSKEGKATVEALINKYKLKEGNPSR 99 (245)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHTCCSSSCCT
T ss_pred HHHHHHHhhHhHHHHHHHHHHHhCeecCCCCc
Confidence 22222222233334678888888866665544
No 144
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.70 E-value=1.8e+02 Score=19.99 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHh--cCCCcchhhhHhhhcc----CCCceeeecchhHHHHHHHcCC
Q 031857 27 KISSQDVEDNICKFAK--KGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGL 80 (151)
Q Consensus 27 ~~~~eeve~~Ivklak--kG~~pSqIG~iLRD~~----GIp~Vk~vtG~ki~~ILk~ngl 80 (151)
.+++ |.++.|.++.+ .+.++.+|-..|.+++ |+. +.-..|.++|+...-
T Consensus 90 ~~~~-~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~----~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 90 VATP-KVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTV----PSVSSINRIIRTKVQ 144 (149)
T ss_dssp SSCH-HHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTS----CCHHHHHHHHHCC--
T ss_pred CCCH-HHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCC----cCHHHHHHHHHHHhc
Confidence 3454 45556666654 3589999999998876 642 344568888877654
No 145
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=23.65 E-value=1.2e+02 Score=24.78 Aligned_cols=64 Identities=8% Similarity=-0.016 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc-----CCCcchhhhHh-hhccCC---Cceeeecchh----HHHHHHHcCCCCCChhhHHHHHHHHHH
Q 031857 33 VEDNICKFAKK-----GLTPSQIGVIL-RDSHGI---AQVKSVTGSK----ILRILKAHGLAPEIPEDLYHLIKKAVA 97 (151)
Q Consensus 33 ve~~Ivklakk-----G~~pSqIG~iL-RD~~GI---p~Vk~vtG~k----i~~ILk~nglap~iPEDL~~LikKAv~ 97 (151)
..+.+.++|++ |.||+|+-+.- ..+-+| ..+-.|.|.+ |.+.++.-.. ++++++.+..|..+..
T Consensus 273 ~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~vI~G~~~~~~l~enl~a~~~-~~L~~e~~~~l~~~~~ 349 (360)
T 2bp1_A 273 AIALVEKALQAAYGASAPSVTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNLAATEE-GPLEPAVVDAFNQAWH 349 (360)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSSCCGGGTCEEEECCSSHHHHHHHHHHHTS-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCcccccCCCeEEECCCCHHHHHHHHHhcCC-CCCCHHHHHHHHHHHH
Confidence 34566667765 99999997643 233333 1123455544 4444443222 3688888887776643
No 146
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=23.59 E-value=65 Score=22.15 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=24.0
Q ss_pred cchhHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 031857 67 TGSKILRILKAHGLAPEIPEDLYHLIKKAVA 97 (151)
Q Consensus 67 tG~ki~~ILk~nglap~iPEDL~~LikKAv~ 97 (151)
.-++|++|-...|+. ++++|...+|--|+.
T Consensus 8 Lqkri~~I~~k~gl~-~~~~dv~~~iS~a~q 37 (75)
T 1h3o_A 8 LQRRILEIGKKHGIT-ELHPDVVSYVSHATQ 37 (75)
T ss_dssp HHHHHHHHHHTTTCC-EECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cCChhHHHHhHHHHH
Confidence 457899999999985 688888888777754
No 147
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.56 E-value=65 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=13.1
Q ss_pred CCCCCccCChHHHHHHHHHHH
Q 031857 21 TPPSWLKISSQDVEDNICKFA 41 (151)
Q Consensus 21 ~~P~W~~~~~eeve~~Ivkla 41 (151)
.+|.=+-..+.||...|-++|
T Consensus 12 ~p~~~ii~PPpdir~iIdktA 32 (90)
T 2e5z_A 12 APVAAIIPPPPDVQPVIDKLA 32 (90)
T ss_dssp CCCCSCCCCCTTTHHHHHHHH
T ss_pred CCCCCccCCCHHHHHHHHHHH
Confidence 444445555667777777765
No 148
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=23.54 E-value=61 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=26.0
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
+.++++++|.+.+..|.++|++++.|-..+
T Consensus 44 ~~~i~~~~i~~~~~~l~~~~~s~~t~~~~~ 73 (292)
T 4a8e_A 44 GHSPTARDALRFLAKLKRKGYSTRSLNLVI 73 (292)
T ss_dssp TCCSSHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 567899999999999999999998876544
No 149
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=23.48 E-value=44 Score=19.92 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHh-cCCCcchh
Q 031857 30 SQDVEDNICKFAK-KGLTPSQI 50 (151)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqI 50 (151)
++|+.+.+..+|+ .|.|.|+|
T Consensus 11 ~~~l~~~l~~lA~~~~rs~s~l 32 (52)
T 2gpe_A 11 DDATRERIKSAATRIDRTPHWL 32 (52)
T ss_dssp EHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHH
Confidence 5788888999988 78888886
No 150
>3k3w_A Penicillin G acylase; hydrolase; 3.31A {Alcaligenes faecalis} PDB: 3ml0_A
Probab=23.47 E-value=15 Score=29.00 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.7
Q ss_pred hHhhhccCCCceeeec
Q 031857 52 VILRDSHGIAQVKSVT 67 (151)
Q Consensus 52 ~iLRD~~GIp~Vk~vt 67 (151)
.|.||.||||-|..-+
T Consensus 6 ~I~RD~~GVPHI~A~~ 21 (196)
T 3k3w_A 6 EVMRDSYGVPHVFADS 21 (196)
T ss_dssp EEEECTTCCEEEECSS
T ss_pred EEEECCCCCceEEeCC
Confidence 3689999999987544
No 151
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=23.45 E-value=39 Score=25.80 Aligned_cols=22 Identities=5% Similarity=0.243 Sum_probs=19.7
Q ss_pred cCChHHHHHHHHHHHhcCCCcc
Q 031857 27 KISSQDVEDNICKFAKKGLTPS 48 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pS 48 (151)
++|.+||.++|.-|-.+|..|+
T Consensus 13 ~ltdeqI~kQI~YlL~qGw~p~ 34 (139)
T 1bxn_I 13 ELTDEQITKQLEYCLNQGWAVG 34 (139)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeEE
Confidence 4699999999999999999765
No 152
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=23.29 E-value=12 Score=28.29 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=14.6
Q ss_pred hHHHHHHHcCCCCCChhhHH
Q 031857 70 KILRILKAHGLAPEIPEDLY 89 (151)
Q Consensus 70 ki~~ILk~nglap~iPEDL~ 89 (151)
...+.|.+.|+-+.-|++|+
T Consensus 252 ~~~~~~~~~g~i~~~~~~~~ 271 (272)
T 2czl_A 252 RLFAEAEARGLAAPSPRPLF 271 (272)
T ss_dssp HHHHHHHHTTSSCCCSSCSB
T ss_pred HHHHHHHHcCCCCCCccccc
Confidence 35677888998887777654
No 153
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.26 E-value=1.1e+02 Score=20.10 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCCcCCCCCCCCCCCccCChHHHHHHH
Q 031857 10 GISASALPYKRTPPSWLKISSQDVEDNI 37 (151)
Q Consensus 10 G~S~S~~P~~~~~P~W~~~~~eeve~~I 37 (151)
|.|||..+.+..+|.+..-+..+--..+
T Consensus 1 ~ssgs~~~~~~~~~~~~~~~~~~~~~~~ 28 (96)
T 2ctd_A 1 GSSGSSGRIRKEPPVYAAGSLEEQWYLE 28 (96)
T ss_dssp CCCCCCCCCCCCCCSSCTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCchHHHHHHHH
Confidence 6789999999999999877766654444
No 154
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=23.23 E-value=50 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHhh
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iLR 55 (151)
++|.||.++.+-.+..--+||.|||-.|-
T Consensus 25 ~Lt~eEa~~~~~~il~g~~~~~QiaAfL~ 53 (345)
T 1khd_A 25 SMTQEESHQLFAAIVRGELEDSQLAAALI 53 (345)
T ss_dssp CCCHHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47899999999999888899999997764
No 155
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.83 E-value=1.4e+02 Score=20.39 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=27.0
Q ss_pred CCCCcCCCCCC---CCCCCccCChHHHHHHHHHHHhcCCCcchhhhHhhhcc
Q 031857 10 GISASALPYKR---TPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH 58 (151)
Q Consensus 10 G~S~S~~P~~~---~~P~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~ 58 (151)
|.|||..+.+. ...+|.+ ++.|.+|..-|++..+.=..|+-..
T Consensus 1 ~~~~~~~~~k~~~~~~~~~~n------~~~I~qL~~MGF~~~~a~~AL~~~n 46 (85)
T 2dkl_A 1 GSSGSSGGMKTSGKQDEAWIM------SRLIKQLTDMGFPREPAEEALKSNN 46 (85)
T ss_dssp CCCCCCCCCCCCCCCCHHHHH------HHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCcCccCCCCCCCccccC------HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 55666665544 2334532 5666667777999988877776444
No 156
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin acylase, antibiotics, penicillin acylase, N- terminal hydrolase; 2.00A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A 2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Probab=22.31 E-value=16 Score=28.27 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.1
Q ss_pred hHhhhccCCCceeeec
Q 031857 52 VILRDSHGIAQVKSVT 67 (151)
Q Consensus 52 ~iLRD~~GIp~Vk~vt 67 (151)
.|.||.||||-|..-+
T Consensus 19 ~I~RD~~GVPHI~A~~ 34 (169)
T 1fm2_A 19 EILWDGYGVPHIYGVD 34 (169)
T ss_dssp EEEEETTSCEEEECSS
T ss_pred EEEECCCCceEEEeCC
Confidence 5789999999987543
No 157
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=22.24 E-value=68 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHH----HhcCCCcchhhhHhhhccCC
Q 031857 29 SSQDVEDNICKF----AKKGLTPSQIGVILRDSHGI 60 (151)
Q Consensus 29 ~~eeve~~Ivkl----akkG~~pSqIG~iLRD~~GI 60 (151)
+.||+++.+..+ -+-|+|-++||..|-.-||-
T Consensus 2 ~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~ 37 (151)
T 3d1n_I 2 NMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGP 37 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSC
T ss_pred CHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCC
Confidence 678887776654 34799999999999888874
No 158
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.15 E-value=77 Score=21.35 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHhcCCCcchhhhHhhhccC
Q 031857 28 ISSQDVEDNICKFAKKGLTPSQIGVILRDSHG 59 (151)
Q Consensus 28 ~~~eeve~~IvklakkG~~pSqIG~iLRD~~G 59 (151)
-+.++.++.|.+|-.-|++..+.=..||...|
T Consensus 24 ~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~ 55 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAMGFDRTQVEVALAAADD 55 (73)
T ss_dssp CCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS
T ss_pred cCCcccHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 34556677888888889999999999998765
No 159
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.06 E-value=53 Score=24.02 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCCCCCCCccCChHHHH--HHHHHHHhcCCCcchhhhHhh
Q 031857 17 PYKRTPPSWLKISSQDVE--DNICKFAKKGLTPSQIGVILR 55 (151)
Q Consensus 17 P~~~~~P~W~~~~~eeve--~~IvklakkG~~pSqIG~iLR 55 (151)
|..+..--.=.|+.++|+ ..|..|...|+|-.+|..+|.
T Consensus 44 p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 44 FLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp TCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444455667888887 568899999999999999886
No 160
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=22.03 E-value=96 Score=22.52 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCcchhhhHhhhccCCCceeeecchhHHHHHHH-cCCCCCChhhHHHHHH-HHHHHHH-HHhHcCCcccc
Q 031857 35 DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKA-HGLAPEIPEDLYHLIK-KAVAIRK-HLERNRKDKDS 111 (151)
Q Consensus 35 ~~IvklakkG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~-nglap~iPEDL~~Lik-KAv~iRk-HLe~n~kD~~~ 111 (151)
+.+.+|+. .||..|.. +|||.+..+ .-+.++-+. .|..--||-....... +-..|+. +--.|-+++..
T Consensus 30 e~L~el~~------~ig~~L~~-~Gi~~~~~i--e~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~f~G~n~~eLAr 100 (129)
T 1rr7_A 30 ALLAELND------LLRGELSR-LGVDPAHSL--EIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDFNGRNVSELTT 100 (129)
T ss_dssp HHHHHHHH------HHHHHHHH-TSSCTTSHH--HHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHHCCSSCHHHHHH
T ss_pred HHHHHHHH------HHHHHHHH-cCCCHHHHH--HHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55556654 56778886 799996665 333444444 5788888876653322 1122222 22223333333
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 031857 112 KFRLILVESRIHRLARYYKK 131 (151)
Q Consensus 112 k~~L~LiESkI~RL~rYYk~ 131 (151)
|| -|.|..|+|+++=-++
T Consensus 101 kY--gLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 101 RY--GVTFNTVYKAIRRMRR 118 (129)
T ss_dssp HH--TCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHH
Confidence 43 4678899999875443
No 161
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=21.58 E-value=60 Score=22.21 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCcchhhhHhhhc
Q 031857 33 VEDNICKFAKKGLTPSQIGVILRDS 57 (151)
Q Consensus 33 ve~~IvklakkG~~pSqIG~iLRD~ 57 (151)
+++.|.=|-.||+|..+|-..|+..
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 5678888999999999999988863
No 162
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=21.54 E-value=71 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.446 Sum_probs=20.6
Q ss_pred cCChHHHHHHHHHHHhcC-CCcchhhhHh
Q 031857 27 KISSQDVEDNICKFAKKG-LTPSQIGVIL 54 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG-~~pSqIG~iL 54 (151)
.+|.|||.+.+..|..+| .++..||+.+
T Consensus 40 ~Ltdeev~~Va~~L~~~~~i~~~dI~~~I 68 (112)
T 2lky_A 40 RLTNDEIKAIAEDLEKRAHFDHIDIGVLI 68 (112)
T ss_dssp TCCHHHHHHHHHHHHHHCCCSCCCSHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 479999999999999886 3444455443
No 163
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.40 E-value=99 Score=18.29 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=13.0
Q ss_pred HHHHHHHHHHh-cCCCcchhhhHh
Q 031857 32 DVEDNICKFAK-KGLTPSQIGVIL 54 (151)
Q Consensus 32 eve~~Ivklak-kG~~pSqIG~iL 54 (151)
.+-+.|..+.+ +|+|..+++..+
T Consensus 13 ~~~~~l~~~r~~~g~s~~~lA~~~ 36 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLS 36 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444444443 677777766555
No 164
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.25 E-value=95 Score=19.51 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=29.7
Q ss_pred cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCCCCC
Q 031857 43 KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEI 84 (151)
Q Consensus 43 kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~nglap~i 84 (151)
..+|..+|-..|+++. |.|-..|=-..++.|++.|+--.+
T Consensus 32 ~~~s~~el~~~l~~~~--~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMG--EEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCeEEE
Confidence 3578888888888764 566667777788888888875443
No 165
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=21.10 E-value=13 Score=28.72 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=35.5
Q ss_pred CChhhHHHHHHHHHHHHHHHhHcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 031857 83 EIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139 (151)
Q Consensus 83 ~iPEDL~~LikKAv~iRkHLe~n~kD~~~k~~L~LiESkI~RL~rYYk~~~~LP~~W 139 (151)
.|+-|.+. +.+.++...++.-... +.....++|+=..=+..|-.....+|..+
T Consensus 73 ~l~~D~~~---R~l~~~~~a~~~~~~l-~~~~r~~l~aYa~GvNayl~~~~~lp~e~ 125 (170)
T 3l91_A 73 NLPSDIFY---AWLNQPEALQAFWQAQ-TPAVRQLLEGYAAGFNRFLREADGKTTSC 125 (170)
T ss_dssp HHHHHHHH---HHHTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHCCSTTCTT
T ss_pred hhhhhHHH---HHcCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 36777664 6667777666654333 33445778888877788877777888765
No 166
>1cp9_A Penicillin amidohydrolase; antibiotic resistance, NTN-hydrolase fold, N-terminal pyroglutamate, penicillin binding protein; 2.50A {Providencia rettgeri} SCOP: d.153.1.2
Probab=21.09 E-value=18 Score=28.64 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=11.5
Q ss_pred hHhhhccCCCceeeec
Q 031857 52 VILRDSHGIAQVKSVT 67 (151)
Q Consensus 52 ~iLRD~~GIp~Vk~vt 67 (151)
.|.||.+|||-|..-+
T Consensus 6 ~I~RD~~GVPHI~A~~ 21 (205)
T 1cp9_A 6 KIERDNYGVPHIYAND 21 (205)
T ss_dssp EEEECTTCCEEEECSS
T ss_pred EEEECCCCCeeEEeCC
Confidence 3678888888877533
No 167
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.06 E-value=1.6e+02 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=6.3
Q ss_pred CCCcchhhhHhhhc
Q 031857 44 GLTPSQIGVILRDS 57 (151)
Q Consensus 44 G~~pSqIG~iLRD~ 57 (151)
|++++.|..+.+..
T Consensus 36 gvs~~~is~~e~g~ 49 (80)
T 3kz3_A 36 GMGQSAVAALFNGI 49 (80)
T ss_dssp TSCHHHHHHHHTTS
T ss_pred CcCHHHHHHHHcCC
Confidence 44444444444433
No 168
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=21.01 E-value=54 Score=21.41 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=20.0
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhH
Q 031857 25 WLKISSQDVEDNICKFAKKGLTPSQIGVI 53 (151)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~i 53 (151)
.-++++++|.+.+..|.++| +|+.|-.+
T Consensus 48 l~~It~~~i~~~~~~l~~~~-s~~t~~~~ 75 (121)
T 2kkv_A 48 IRQLKTSHLLAPIKEVDTSG-KHDVAQRL 75 (121)
T ss_dssp TTCCCSGGGHHHHHHHHHTT-THHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 34678888888888887776 66665443
No 169
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=20.94 E-value=25 Score=33.10 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCC---CcchhhhHhhhccCCCceee
Q 031857 31 QDVEDNICKFAKKGL---TPSQIGVILRDSHGIAQVKS 65 (151)
Q Consensus 31 eeve~~IvklakkG~---~pSqIG~iLRD~~GIp~Vk~ 65 (151)
+++++.|.+++-.-+ ||.|+|.+|-|..|+|..|.
T Consensus 468 ~~l~~~i~~~~g~~fN~~Spkql~~~Lf~~lglp~~kk 505 (832)
T 1bgx_T 468 ARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGK 505 (832)
T ss_dssp HHHHHHHHHSSSSCCCCSCHHHHTTTTTTSCCCCCCCS
T ss_pred HHHHHHHHHHhCCCcCCCCHHHHHHHHHHhcCCCCccc
Confidence 566677777764322 79999999999999996553
No 170
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=20.72 E-value=25 Score=30.29 Aligned_cols=53 Identities=13% Similarity=0.427 Sum_probs=31.0
Q ss_pred ccCChHHHHHHHHHHHhc-CCCcchhhhHhhhccCC-Ccee-eecchhHHHHHHHc
Q 031857 26 LKISSQDVEDNICKFAKK-GLTPSQIGVILRDSHGI-AQVK-SVTGSKILRILKAH 78 (151)
Q Consensus 26 ~~~~~eeve~~Ivklakk-G~~pSqIG~iLRD~~GI-p~Vk-~vtG~ki~~ILk~n 78 (151)
++.|.+||.+.|.++|.. |++|.++-..+..+-+. +.++ .+.-.|+...|.++
T Consensus 349 I~vt~eev~~~i~~~A~~yg~~~~~~~~~~~~~~~~~~~l~~~i~~~Kv~d~l~e~ 404 (433)
T 3gty_X 349 ISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQE 404 (433)
T ss_dssp CCCCHHHHHHHHTTSTTTTTSCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999888873 66776655555433221 2222 34444555555444
No 171
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=20.71 E-value=54 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHh-cCCCcchh
Q 031857 30 SQDVEDNICKFAK-KGLTPSQI 50 (151)
Q Consensus 30 ~eeve~~Ivklak-kG~~pSqI 50 (151)
++|+.+.+..||+ .|-|+|.|
T Consensus 11 ~~el~~rL~~lA~~~~rs~s~l 32 (58)
T 2ay0_A 11 DDATRERIKSAATRIDRTPHWL 32 (58)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHH
Confidence 5788999999998 89999987
No 172
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=20.60 E-value=64 Score=20.32 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=22.0
Q ss_pred CccCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 25 WLKISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 25 W~~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
--++++++|.+.+..|. +|++|+.|...+
T Consensus 44 l~~it~~~i~~~~~~l~-~~~s~~t~~~~~ 72 (110)
T 2khq_A 44 LKDIKRTEYQKFLNEYG-LTHSYETIRKLN 72 (110)
T ss_dssp GGGCCHHHHHHHHHHHH-HHSCHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 34678899999998886 478887776655
No 173
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.56 E-value=64 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhHh
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVIL 54 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~iL 54 (151)
++|.||+++.+-.+..--+|+.|||-.|
T Consensus 15 ~Lt~eEa~~~~~~i~~G~~~d~QiaAfL 42 (423)
T 2dsj_A 15 KHRREDLEAFLLGYLRDEVPDYQVSAWL 42 (423)
T ss_dssp CCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3577777777777777777777777655
No 174
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.48 E-value=53 Score=25.72 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=34.1
Q ss_pred HHHHHh-cCCCcchhhhHhhhccCCCceeeecchhHHHHHHHcCCC-CC
Q 031857 37 ICKFAK-KGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA-PE 83 (151)
Q Consensus 37 Ivklak-kG~~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngla-p~ 83 (151)
|.+.|+ -|+|+|-+-.+|.+. |.|..-|-.+|.++.++-|-. |.
T Consensus 12 i~diA~~aGVS~~TVSrvLn~~---~~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 12 LASIAAKLGISRTTVSNAYNRP---EQLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCG---GGSCHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhCCCHHHHHHHHCCC---CCCCHHHHHHHHHHHHHhCCCCCC
Confidence 344444 599999999999875 578899999999999999986 53
No 175
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.45 E-value=72 Score=21.90 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.8
Q ss_pred ccCChHHHHHHHHHHHhcCCC
Q 031857 26 LKISSQDVEDNICKFAKKGLT 46 (151)
Q Consensus 26 ~~~~~eeve~~IvklakkG~~ 46 (151)
|.++..+|..++..|.++|+-
T Consensus 39 Lg~sK~~vNr~LY~L~kkG~V 59 (75)
T 1sfu_A 39 LKINKKKINQQLYKLQKEDTV 59 (75)
T ss_dssp TTCCHHHHHHHHHHHHHTTSE
T ss_pred HCCCHHHHHHHHHHHHHCCCE
Confidence 567888999999999999963
No 176
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=20.33 E-value=73 Score=25.94 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=25.8
Q ss_pred CCccCChHHHHHHHHHHHhcCCCcchhhhHhhhccCCC
Q 031857 24 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIA 61 (151)
Q Consensus 24 ~W~~~~~eeve~~IvklakkG~~pSqIG~iLRD~~GIp 61 (151)
..+.-|+|+|++.|.++.+.|.. . =|.||=..||||
T Consensus 296 ~~l~~t~e~I~~~v~~~l~~~~~-~-~g~Il~~gcgi~ 331 (359)
T 2inf_A 296 SILLAPWEVIEQKTKEILDQGME-S-DGFIFNLGHGVF 331 (359)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHTT-S-SCEEBCBSSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-C-CCeEEeCCCCCC
Confidence 34555899999999998876421 1 177888888887
No 177
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=20.26 E-value=84 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=18.5
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhhhH
Q 031857 27 KISSQDVEDNICKFAKKGLTPSQIGVI 53 (151)
Q Consensus 27 ~~~~eeve~~IvklakkG~~pSqIG~i 53 (151)
++++.+|.+.+.+|.+.| +|+.+..+
T Consensus 54 ~It~~~i~~~l~~l~~~~-~~~t~~~~ 79 (118)
T 2kj9_A 54 ELDTGDLLVPIKKIEKLG-YLEIAMRV 79 (118)
T ss_dssp GCCHHHHHHHHHHHHTTT-CHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 568888888888887766 56655443
No 178
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=20.07 E-value=55 Score=26.45 Aligned_cols=64 Identities=14% Similarity=-0.006 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh-cCC-CcchhhhHhhhccCCCceeeecchhHHHHHHHcCC--CCCChhhHHHHHHHHH
Q 031857 32 DVEDNICKFAK-KGL-TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGL--APEIPEDLYHLIKKAV 96 (151)
Q Consensus 32 eve~~Ivklak-kG~-~pSqIG~iLRD~~GIp~Vk~vtG~ki~~ILk~ngl--ap~iPEDL~~LikKAv 96 (151)
++.+.+.++|+ .|. ||+|+-+.--=+++-. +-.|.|.+=.+-|++|=- .-+++++-+..|..+.
T Consensus 243 ~~~~~l~~ia~~~g~~s~aqvaL~w~l~~~~v-~~vI~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 310 (333)
T 1pz1_A 243 SAVNQLDKLAKTRYGKSVIHLAVRWILDQPGA-DIALWGARKPGQLEALSEITGWTLNSEDQKDINTIL 310 (333)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHTSTTC-CEEEEECCSGGGGTTCTTSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC-eEEEeCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 44466677765 699 9999987655555411 234555444444555432 2368888887777664
Done!