BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031858
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0Z|A Chain A, Solution Structure Of The First Zinc-Finger Domain From
Znf265
Length = 45
Score = 32.7 bits (73), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFK 85
V GDW C CG NFA R+SC +CG K
Sbjct: 10 VSDGDWICPDKKCGNVNFARRTSCDRCGREK 40
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 5 GDWNC--RSCQHLNFQRRDSCQRCG 27
GDW C + C ++NF RR SC RCG
Sbjct: 13 GDWICPDKKCGNVNFARRTSCDRCG 37
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 116 GDWICTRSGCNEHNFASRMECFRCNAPRDFG 146
GDWIC C NFA R C RC + G
Sbjct: 13 GDWICPDKKCGNVNFARRTSCDRCGREKTTG 43
>pdb|3G9Y|A Chain A, Crystal Structure Of The Second Zinc Finger From
Zranb2ZNF265 BOUND To 6 Nt Ssrna Sequence Agguaa
pdb|2K1P|A Chain A, Solution Structure Of The Second Zinc Finger Domain Of
Zranb2ZNF265
Length = 33
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 DWNCRSCQHLNFQRRDSCQRCGDPR 30
DW C++C ++N+ RR C C P+
Sbjct: 6 DWQCKTCSNVNWARRSECNMCNTPK 30
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 7 WNCRSCQHLNFQRRD-------SCQRCGDPR 30
W C CQ +N R + SC+ CG PR
Sbjct: 415 WYCEDCQAVNVPRPERYLEDPTSCEACGSPR 445
>pdb|2LK0|A Chain A, Solution Structure And Binding Studies Of The Ranbp2-Type
Zinc Finger Of Rbm5
pdb|2LK1|A Chain A, Solution Structure And Binding Studies Of The Ranbp2-Type
Zinc Finger Of Rbm5
Length = 32
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 114 KSGDWICTRSGCNEHNFASRMECFRCNAPR 143
K DW+C + C +NF R++CFRC A +
Sbjct: 2 KFEDWLCNK--CCLNNFRKRLKCFRCGADK 29
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 59 DWYCSAGNCGAHNFASRSSCFKCGAFKDD 87
DW C+ C +NF R CF+CGA K D
Sbjct: 5 DWLCNK--CCLNNFRKRLKCFRCGADKFD 31
>pdb|3A9K|C Chain C, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 5 GDWNCRSCQHLNFQRRDSCQRCGDPR 30
WNC SC LN + C++C PR
Sbjct: 7 APWNCDSCTFLNHPALNRCEQCEMPR 32
>pdb|3A9J|C Chain C, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 34
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 5 GDWNCRSCQHLNFQRRDSCQRCGDPR 30
WNC +C LN C++C PR
Sbjct: 7 AQWNCTACTFLNHPALIRCEQCEMPR 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.534
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,028,619
Number of Sequences: 62578
Number of extensions: 116604
Number of successful extensions: 226
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 16
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)