Query 031858
Match_columns 151
No_of_seqs 189 out of 771
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj8_B Nuclear pore complex pr 99.8 1.4E-19 4.7E-24 125.3 2.2 83 2-87 4-91 (92)
2 3gj8_B Nuclear pore complex pr 99.7 3.7E-18 1.3E-22 118.1 2.2 84 55-145 4-91 (92)
3 3gj7_B Nuclear pore complex pr 99.3 4E-13 1.4E-17 93.8 2.1 81 4-86 7-97 (98)
4 2lk0_A RNA-binding protein 5; 99.3 8.7E-13 3E-17 74.3 2.6 31 2-32 1-31 (32)
5 1n0z_A ZNF265; zinc finger, RN 99.3 4.1E-12 1.4E-16 76.8 4.0 37 110-146 7-43 (45)
6 2k1p_A Zinc finger RAN-binding 99.2 3.2E-12 1.1E-16 72.4 3.0 31 2-32 2-32 (33)
7 2k1p_A Zinc finger RAN-binding 99.2 7.1E-12 2.4E-16 71.0 2.9 31 113-145 2-32 (33)
8 1n0z_A ZNF265; zinc finger, RN 99.2 1.3E-11 4.4E-16 74.6 4.2 36 53-88 8-43 (45)
9 3gj7_B Nuclear pore complex pr 99.2 4.7E-12 1.6E-16 88.3 2.1 84 56-145 6-98 (98)
10 2lk0_A RNA-binding protein 5; 99.2 8.6E-12 2.9E-16 70.1 2.2 31 114-146 2-32 (32)
11 3gj3_B Nuclear pore complex pr 98.6 1.8E-08 6.2E-13 56.8 2.5 29 3-31 4-32 (33)
12 3gj5_B Nuclear pore complex pr 98.6 2E-08 6.8E-13 56.9 2.4 31 2-32 3-33 (34)
13 2ebq_A Nuclear pore complex pr 98.5 9.9E-08 3.4E-12 57.8 3.4 33 1-33 6-38 (47)
14 2ebr_A Nuclear pore complex pr 98.3 5.9E-07 2E-11 54.4 3.4 37 109-147 3-39 (47)
15 3gj5_B Nuclear pore complex pr 98.3 3.5E-07 1.2E-11 51.8 2.1 31 55-87 3-33 (34)
16 2ebr_A Nuclear pore complex pr 98.2 1E-06 3.5E-11 53.3 4.0 37 52-90 4-40 (47)
17 3gj3_B Nuclear pore complex pr 98.2 5E-07 1.7E-11 50.8 2.1 30 55-86 3-32 (33)
18 2ebq_A Nuclear pore complex pr 98.2 1.3E-06 4.4E-11 52.8 3.7 36 110-147 4-39 (47)
19 2ebv_A Nuclear pore complex pr 98.1 3E-06 1E-10 53.2 4.5 39 46-86 18-56 (57)
20 2ebv_A Nuclear pore complex pr 97.9 1.2E-05 4E-10 50.5 4.4 35 109-145 23-57 (57)
21 2d9g_A YY1-associated factor 2 97.7 2.2E-05 7.6E-10 48.5 3.3 31 3-33 8-38 (53)
22 2d9g_A YY1-associated factor 2 97.6 5E-05 1.7E-09 46.9 3.9 33 112-146 6-38 (53)
23 3a9j_C Mitogen-activated prote 97.2 0.00024 8.4E-09 39.6 2.7 28 4-31 6-33 (34)
24 1nj3_A NPL4; NZF domain, rubre 97.0 0.00045 1.5E-08 37.7 2.7 27 4-30 4-30 (31)
25 3a9j_C Mitogen-activated prote 96.8 0.0008 2.7E-08 37.5 2.4 28 115-144 6-33 (34)
26 1nj3_A NPL4; NZF domain, rubre 96.7 0.0014 4.7E-08 35.7 3.0 27 115-143 4-30 (31)
27 3b08_B Ranbp-type and C3HC4-ty 96.3 0.0027 9.2E-08 40.5 2.8 28 6-33 8-35 (64)
28 2crc_A Ubiquitin conjugating e 95.8 0.0098 3.4E-07 36.4 3.6 30 115-146 8-37 (52)
29 2crc_A Ubiquitin conjugating e 95.5 0.017 6E-07 35.2 3.9 30 57-88 8-37 (52)
30 3b08_B Ranbp-type and C3HC4-ty 95.2 0.012 4.1E-07 37.5 2.7 30 115-146 6-35 (64)
31 2c6a_A Ubiquitin-protein ligas 93.6 0.041 1.4E-06 32.7 2.3 27 5-31 12-38 (46)
32 1w7p_D VPS36P, YLR417W; ESCRT- 90.6 0.047 1.6E-06 48.1 0.0 81 5-87 116-206 (566)
33 2c6a_A Ubiquitin-protein ligas 90.5 0.17 5.7E-06 30.0 2.3 29 115-145 11-39 (46)
34 1w7p_D VPS36P, YLR417W; ESCRT- 87.2 0.11 3.9E-06 45.6 0.0 83 56-145 114-206 (566)
35 2cr8_A MDM4 protein; ZF-ranbp 85.5 0.58 2E-05 28.3 2.5 26 6-31 11-36 (53)
36 2cr8_A MDM4 protein; ZF-ranbp 74.6 3.4 0.00012 24.9 3.3 31 54-86 6-36 (53)
37 2ayj_A 50S ribosomal protein L 73.6 1.8 6.3E-05 26.5 2.0 23 6-28 19-41 (56)
38 2kn9_A Rubredoxin; metalloprot 73.3 5.7 0.0002 26.1 4.5 17 51-69 52-68 (81)
39 1e8j_A Rubredoxin; iron-sulfur 70.8 9.5 0.00033 22.7 4.8 17 51-69 28-44 (52)
40 3j21_g 50S ribosomal protein L 66.6 2.9 9.8E-05 25.1 1.7 25 5-29 13-37 (51)
41 2j9u_B VPS36, vacuolar protein 64.5 3.6 0.00012 26.7 2.0 26 6-31 17-51 (76)
42 4b2u_A S67; toxin, ICK; NMR {S 62.9 0.87 3E-05 24.7 -1.0 12 2-13 14-25 (36)
43 1dx8_A Rubredoxin; electron tr 62.2 10 0.00036 24.0 3.9 18 51-70 32-49 (70)
44 1s24_A Rubredoxin 2; electron 55.4 14 0.00046 24.6 3.7 17 51-69 60-76 (87)
45 6rxn_A Rubredoxin; electron tr 54.7 7.8 0.00027 22.6 2.1 12 6-17 4-15 (46)
46 3v43_A Histone acetyltransfera 49.2 14 0.00047 25.0 3.1 19 3-29 52-70 (112)
47 2ayj_A 50S ribosomal protein L 49.1 6.6 0.00023 24.0 1.2 28 55-84 15-42 (56)
48 4rxn_A Rubredoxin; electron tr 40.4 12 0.0004 22.6 1.4 18 51-70 28-45 (54)
49 1yk4_A Rubredoxin, RD; electro 36.2 15 0.00051 21.8 1.4 17 51-69 27-43 (52)
50 2v3b_B Rubredoxin 2, rubredoxi 36.0 15 0.00051 22.1 1.3 17 51-69 28-44 (55)
51 1dl6_A Transcription factor II 35.4 22 0.00076 21.4 2.1 35 15-71 6-40 (58)
52 2kdx_A HYPA, hydrogenase/ureas 32.6 26 0.0009 23.8 2.4 28 4-31 71-101 (119)
53 3asl_A E3 ubiquitin-protein li 32.4 57 0.0019 20.1 3.7 11 57-69 57-68 (70)
54 1xwh_A Autoimmune regulator; P 31.9 28 0.00094 21.2 2.2 25 2-28 4-28 (66)
55 2k4x_A 30S ribosomal protein S 31.1 15 0.00052 22.0 0.8 24 6-29 18-45 (55)
56 3a43_A HYPD, hydrogenase nicke 31.0 29 0.00098 24.5 2.4 28 4-31 68-118 (139)
57 1fp0_A KAP-1 corepressor; PHD 30.4 20 0.00067 23.7 1.3 12 4-15 61-72 (88)
58 1lko_A Rubrerythrin all-iron(I 30.3 22 0.00077 26.3 1.8 26 117-144 155-182 (191)
59 3shb_A E3 ubiquitin-protein li 27.8 75 0.0026 20.1 3.8 9 4-12 19-27 (77)
60 2gmg_A Hypothetical protein PF 26.5 35 0.0012 23.4 2.0 25 6-31 67-95 (105)
61 3pwf_A Rubrerythrin; non heme 24.8 29 0.001 25.3 1.5 28 57-86 136-164 (170)
62 1yuz_A Nigerythrin; rubrythrin 23.6 32 0.0011 25.8 1.6 27 116-144 170-197 (202)
63 2lri_C Autoimmune regulator; Z 23.4 23 0.00079 21.8 0.6 11 4-14 48-58 (66)
64 4gne_A Histone-lysine N-methyl 22.9 29 0.001 23.6 1.1 24 4-27 51-76 (107)
65 2apo_B Ribosome biogenesis pro 22.8 89 0.003 19.1 3.2 26 61-90 8-33 (60)
66 1yuz_A Nigerythrin; rubrythrin 22.5 35 0.0012 25.6 1.6 27 58-86 170-197 (202)
67 3j20_Y 30S ribosomal protein S 21.9 34 0.0011 20.0 1.1 21 7-27 20-44 (50)
68 2ysm_A Myeloid/lymphoid or mix 20.2 43 0.0015 22.2 1.5 20 3-30 45-64 (111)
No 1
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.76 E-value=1.4e-19 Score=125.32 Aligned_cols=83 Identities=22% Similarity=0.466 Sum_probs=26.5
Q ss_pred CCCCCeEeCCCCcccccccccccccCCCCCCCCCCC---CCC--CCCCCCcCcCCCCCCCCCCcccCCCCCCCccccccc
Q 031858 2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCG---FGG--RGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFASRS 76 (151)
Q Consensus 2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~---~~g--~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~ 76 (151)
.++|||+|+.|+++||+++++|++|++|||...... ... ...+...|| ..+..++|+|+|. .|.++|+++++
T Consensus 4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~-~~f~~~~g~W~C~--~C~~~N~a~~~ 80 (92)
T 3gj8_B 4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGL-DKFKKPEGSWDCE--VCLVQNKADST 80 (92)
T ss_dssp -------------------------------------------------------------CCEECT--TTCCEECSSCS
T ss_pred CCCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccc-cccCCCCCcccCC--cCCcCChhhcc
Confidence 478999999999999999999999999998642211 000 000112234 4567789999999 99999999999
Q ss_pred cccccCCCCCC
Q 031858 77 SCFKCGAFKDD 87 (151)
Q Consensus 77 ~C~~C~~~~~~ 87 (151)
+|+.|+++||.
T Consensus 81 ~C~~C~~pkp~ 91 (92)
T 3gj8_B 81 KCIACESAKPG 91 (92)
T ss_dssp BCTTTCCBCC-
T ss_pred cccccCCCCCC
Confidence 99999999984
No 2
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.69 E-value=3.7e-18 Score=118.10 Aligned_cols=84 Identities=23% Similarity=0.481 Sum_probs=26.6
Q ss_pred CCCCCcccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCC--CCc--cCCCCCCCCCCCCCCceEEeCCCCCcccc
Q 031858 55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMP--RSR--GSSFGGGNRSGWKSGDWICTRSGCNEHNF 130 (151)
Q Consensus 55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~~~~~~~~~--~~~--~~g~~~~~~~~~~~gdW~C~~~~C~~~Nf 130 (151)
.++|||+|. .|+++||++++.|++|+++||......-....+ ... ..+| ..+..++|+|+|. .|+++||
T Consensus 4 ~~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~---~~f~~~~g~W~C~--~C~~~N~ 76 (92)
T 3gj8_B 4 GSVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGL---DKFKKPEGSWDCE--VCLVQNK 76 (92)
T ss_dssp -----------------------------------------------------------------CCEECT--TTCCEEC
T ss_pred CCCcCCCCC--cCCCEeccccceecccCCCCCCCCCccccccCcccccccccccc---cccCCCCCcccCC--cCCcCCh
Confidence 467999999 999999999999999999998654311000000 000 0122 3466789999999 8999999
Q ss_pred cccccccCCCCCCCC
Q 031858 131 ASRMECFRCNAPRDF 145 (151)
Q Consensus 131 a~r~~C~~C~~pk~~ 145 (151)
+.+++|+.|++|||.
T Consensus 77 a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 77 ADSTKCIACESAKPG 91 (92)
T ss_dssp SSCSBCTTTCCBCC-
T ss_pred hhcccccccCCCCCC
Confidence 999999999999985
No 3
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.32 E-value=4e-13 Score=93.77 Aligned_cols=81 Identities=22% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCCeEeCCCCcccccccccccccCCCCCCCCCC-----CCCC-----CCCCCCcCcCCCCCCCCCCcccCCCCCCCcccc
Q 031858 4 PGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFC-----GFGG-----RGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFA 73 (151)
Q Consensus 4 ~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~~~~-----~~~g-----~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a 73 (151)
..+|.|..|.++|.++..+|..|++||+..... .... .......||+..+..+.|.|+|. .|.++|.+
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~--~C~~~N~~ 84 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCD--TCLVQNKP 84 (98)
T ss_dssp ----------------------------------------------------------------CCEECT--TTCCEECT
T ss_pred CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCC--cCcCCChh
Confidence 458999999999999999999999999853110 0000 00112345666678889999999 99999999
Q ss_pred ccccccccCCCCC
Q 031858 74 SRSSCFKCGAFKD 86 (151)
Q Consensus 74 ~r~~C~~C~~~~~ 86 (151)
....|..|+++||
T Consensus 85 ~~~~C~aC~tpkP 97 (98)
T 3gj7_B 85 EAVKCVACETPKP 97 (98)
T ss_dssp TCSBCTTTCCBCC
T ss_pred hcceecccCCCCC
Confidence 9999999999997
No 4
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.30 E-value=8.7e-13 Score=74.26 Aligned_cols=31 Identities=35% Similarity=0.825 Sum_probs=28.9
Q ss_pred CCCCCeEeCCCCcccccccccccccCCCCCC
Q 031858 2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSS 32 (151)
Q Consensus 2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~ 32 (151)
+|+|||+|+.|+++||++|+.|++|++||+.
T Consensus 1 pk~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 1 XKFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp -CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 5899999999999999999999999999975
No 5
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.26 E-value=4.1e-12 Score=76.76 Aligned_cols=37 Identities=38% Similarity=0.829 Sum_probs=33.9
Q ss_pred CCCCCCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858 110 RSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146 (151)
Q Consensus 110 ~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~ 146 (151)
.+..++|||+|+++.|+++||++|+.|++|++||+.+
T Consensus 7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 4567899999998889999999999999999999876
No 6
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.25 E-value=3.2e-12 Score=72.38 Aligned_cols=31 Identities=32% Similarity=1.081 Sum_probs=29.4
Q ss_pred CCCCCeEeCCCCcccccccccccccCCCCCC
Q 031858 2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSS 32 (151)
Q Consensus 2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~ 32 (151)
.++|||+|+.|+++||++|+.|++|++||+.
T Consensus 2 ~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccCCCCCccccccccccccCCcCCC
Confidence 4899999999999999999999999999975
No 7
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.20 E-value=7.1e-12 Score=70.95 Aligned_cols=31 Identities=39% Similarity=0.875 Sum_probs=29.1
Q ss_pred CCCCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858 113 WKSGDWICTRSGCNEHNFASRMECFRCNAPRDF 145 (151)
Q Consensus 113 ~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~ 145 (151)
.++|||+|+ .|+++||++|+.|++|++||+.
T Consensus 2 ~~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 2 SSANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CSSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCcccC--CCCCccccccccccccCCcCCC
Confidence 468999999 8999999999999999999985
No 8
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.20 E-value=1.3e-11 Score=74.56 Aligned_cols=36 Identities=44% Similarity=0.887 Sum_probs=33.1
Q ss_pred CCCCCCCcccCCCCCCCccccccccccccCCCCCCC
Q 031858 53 SDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV 88 (151)
Q Consensus 53 ~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~ 88 (151)
...++|||+|+++.|+++||++|..|++|+++|+++
T Consensus 8 ~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 8 FRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp CSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 567899999998889999999999999999999864
No 9
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=99.19 E-value=4.7e-12 Score=88.33 Aligned_cols=84 Identities=23% Similarity=0.521 Sum_probs=26.5
Q ss_pred CCCCcccCCCCCCCccccccccccccCCCCCCCCCCC-----C-CC---CCCCCccCCCCCCCCCCCCCCceEEeCCCCC
Q 031858 56 RPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAGGG-----F-DC---DMPRSRGSSFGGGNRSGWKSGDWICTRSGCN 126 (151)
Q Consensus 56 ~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~~~-----~-~~---~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C~ 126 (151)
....|.|. .|.++|.++...|..|+++|+...... . .+ ........||+ ..+..+.|.|.|. .|.
T Consensus 6 ~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfg--d~fk~~~g~W~C~--~C~ 79 (98)
T 3gj7_B 6 AGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFG--DKFKPAIGTWDCD--TCL 79 (98)
T ss_dssp ---------------------------------------------------------------------CCEECT--TTC
T ss_pred CCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchh--hccCCCCCcccCC--cCc
Confidence 34689999 999999999999999999998543110 0 00 00011123453 5677889999999 899
Q ss_pred cccccccccccCCCCCCCC
Q 031858 127 EHNFASRMECFRCNAPRDF 145 (151)
Q Consensus 127 ~~Nfa~r~~C~~C~~pk~~ 145 (151)
++|.+....|..|++|||.
T Consensus 80 ~~N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 80 VQNKPEAVKCVACETPKPG 98 (98)
T ss_dssp CEECTTCSBCTTTCCBCC-
T ss_pred CCChhhcceecccCCCCCC
Confidence 9999999999999999984
No 10
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.17 E-value=8.6e-12 Score=70.13 Aligned_cols=31 Identities=42% Similarity=0.956 Sum_probs=28.4
Q ss_pred CCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858 114 KSGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146 (151)
Q Consensus 114 ~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~ 146 (151)
+.|||+|+ .|+++||++|..|++|++||++.
T Consensus 2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~a 32 (32)
T 2lk0_A 2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFDX 32 (32)
T ss_dssp CCSEEECT--TTCCEEETTCCBCTTTCCBTTC-
T ss_pred CCCCCCcC--cCcCCcChhcceecCCCCcCCCC
Confidence 57999999 89999999999999999999863
No 11
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.61 E-value=1.8e-08 Score=56.76 Aligned_cols=29 Identities=28% Similarity=0.799 Sum_probs=26.6
Q ss_pred CCCCeEeCCCCcccccccccccccCCCCC
Q 031858 3 RPGDWNCRSCQHLNFQRRDSCQRCGDPRS 31 (151)
Q Consensus 3 k~gdW~C~~C~~~N~~~~~~C~~C~~pkp 31 (151)
++|+|+|+.|.++|.++.++|..|.+|||
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 67999999999999999999999999998
No 12
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.59 E-value=2e-08 Score=56.93 Aligned_cols=31 Identities=23% Similarity=0.656 Sum_probs=25.8
Q ss_pred CCCCCeEeCCCCcccccccccccccCCCCCC
Q 031858 2 NRPGDWNCRSCQHLNFQRRDSCQRCGDPRSS 32 (151)
Q Consensus 2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~ 32 (151)
.++|+|+|+.|.++|.++.++|..|++|||.
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 3689999999999999999999999999984
No 13
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=9.9e-08 Score=57.79 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=30.5
Q ss_pred CCCCCCeEeCCCCcccccccccccccCCCCCCC
Q 031858 1 MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG 33 (151)
Q Consensus 1 ~~k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~ 33 (151)
++++|.|+|..|.+.|.+...+|+.|++|||..
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs 38 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT 38 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence 467899999999999999999999999999864
No 14
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=5.9e-07 Score=54.40 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=33.4
Q ss_pred CCCCCCCCceEEeCCCCCcccccccccccCCCCCCCCCC
Q 031858 109 NRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGN 147 (151)
Q Consensus 109 ~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~~ 147 (151)
..+..+.|.|.|. .|.+.|.+.+..|+.|++|||...
T Consensus 3 ~~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 3 SGSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SSCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred ccccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCc
Confidence 3567789999999 899999999999999999999764
No 15
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=98.26 E-value=3.5e-07 Score=51.76 Aligned_cols=31 Identities=29% Similarity=0.716 Sum_probs=25.6
Q ss_pred CCCCCcccCCCCCCCccccccccccccCCCCCC
Q 031858 55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDD 87 (151)
Q Consensus 55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~ 87 (151)
+++|.|+|. .|.++|.+...+|..|.++||.
T Consensus 3 ~~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCE--VCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECC--eeEeECccccCEEcccCCcCCC
Confidence 578999999 9999999999999999999974
No 16
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1e-06 Score=53.30 Aligned_cols=37 Identities=30% Similarity=0.633 Sum_probs=33.2
Q ss_pred CCCCCCCCcccCCCCCCCccccccccccccCCCCCCCCC
Q 031858 52 GSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDVAG 90 (151)
Q Consensus 52 ~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~ 90 (151)
++...+|.|+|. .|.++|.+.+..|+.|++|++...+
T Consensus 4 ~fk~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~p 40 (47)
T 2ebr_A 4 GSSGPEGSWDCE--LCLVQNKADSTKCLACESAKPGTKS 40 (47)
T ss_dssp SCSSCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCCS
T ss_pred cccCCCCeeECC--eeecCCcCCcceecCcCCCCCCCcc
Confidence 467888999999 9999999999999999999987643
No 17
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=98.22 E-value=5e-07 Score=50.81 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=26.4
Q ss_pred CCCCCcccCCCCCCCccccccccccccCCCCC
Q 031858 55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAFKD 86 (151)
Q Consensus 55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~ 86 (151)
.++|.|+|+ .|.++|.+...+|..|.+|||
T Consensus 3 ~~~g~W~C~--~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 3 LGSGTWDCD--TCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp ---CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCCceeCC--cccCCCccccCEEcccCCCCC
Confidence 467999999 999999999999999999997
No 18
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-06 Score=52.84 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=32.1
Q ss_pred CCCCCCCceEEeCCCCCcccccccccccCCCCCCCCCC
Q 031858 110 RSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFGN 147 (151)
Q Consensus 110 ~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~~ 147 (151)
+...++|.|+|. .|.+.|.+.+.+|+.|++||+...
T Consensus 4 ~~~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 4 GSSGVIGTWDCD--TCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp SCCCCSSSEECS--SSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CcCCCCCceECC--eeeccCccCCceecCcCCCCCCCc
Confidence 345678999999 899999999999999999999764
No 19
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=3e-06 Score=53.22 Aligned_cols=39 Identities=33% Similarity=0.664 Sum_probs=35.4
Q ss_pred CcCcCCCCCCCCCCcccCCCCCCCccccccccccccCCCCC
Q 031858 46 SFGFGTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKD 86 (151)
Q Consensus 46 ~~g~~~~~~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~ 86 (151)
..||+..+.++.|.|+|. .|.++|.+...+|+.|++|+|
T Consensus 18 ~~gfg~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 18 TLGFGDKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CCSCCSCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCHHHhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence 345777789999999999 999999999999999999997
No 20
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=50.47 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=32.8
Q ss_pred CCCCCCCCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858 109 NRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRDF 145 (151)
Q Consensus 109 ~~~~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~ 145 (151)
..+..+.|.|.|. .|.+.|-+...+|+.|++|||.
T Consensus 23 ~~FK~~~GsWeC~--~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 23 DKFKRPIGSWECS--VCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp SCCCCCSSSCCCS--SSCCCCCSSCSBCSSSCCBCCC
T ss_pred HhcCCCCCeeeCC--eeEccCccCCceeeEcCCcCCC
Confidence 6788899999999 8999999999999999999984
No 21
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=48.52 Aligned_cols=31 Identities=23% Similarity=0.610 Sum_probs=28.3
Q ss_pred CCCCeEeCCCCcccccccccccccCCCCCCC
Q 031858 3 RPGDWNCRSCQHLNFQRRDSCQRCGDPRSSG 33 (151)
Q Consensus 3 k~gdW~C~~C~~~N~~~~~~C~~C~~pkp~~ 33 (151)
.++.|.|+.|.++|......|..|.+||+..
T Consensus 8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 4578999999999999999999999999853
No 22
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=5e-05 Score=46.92 Aligned_cols=33 Identities=24% Similarity=0.615 Sum_probs=29.2
Q ss_pred CCCCCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858 112 GWKSGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146 (151)
Q Consensus 112 ~~~~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~ 146 (151)
....+.|.|+ .|.++|.+....|.+|..||+..
T Consensus 6 ~~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 6 SGDEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp SSCCCCEECS--SSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCCcCCC--CCccCCCCCCCccCCCCCcCCcc
Confidence 3456789999 89999999999999999999853
No 23
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.18 E-value=0.00024 Score=39.62 Aligned_cols=28 Identities=36% Similarity=0.914 Sum_probs=25.9
Q ss_pred CCCeEeCCCCcccccccccccccCCCCC
Q 031858 4 PGDWNCRSCQHLNFQRRDSCQRCGDPRS 31 (151)
Q Consensus 4 ~gdW~C~~C~~~N~~~~~~C~~C~~pkp 31 (151)
...|.|+.|.++|......|..|..+|+
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3589999999999999999999999986
No 24
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.02 E-value=0.00045 Score=37.71 Aligned_cols=27 Identities=30% Similarity=0.866 Sum_probs=25.1
Q ss_pred CCCeEeCCCCcccccccccccccCCCC
Q 031858 4 PGDWNCRSCQHLNFQRRDSCQRCGDPR 30 (151)
Q Consensus 4 ~gdW~C~~C~~~N~~~~~~C~~C~~pk 30 (151)
...|.|+.|.++|......|..|.+|+
T Consensus 4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CccccCCcccccCCCCCCccCCcCCCC
Confidence 458999999999999999999999987
No 25
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=96.78 E-value=0.0008 Score=37.47 Aligned_cols=28 Identities=32% Similarity=0.871 Sum_probs=25.8
Q ss_pred CCceEEeCCCCCcccccccccccCCCCCCC
Q 031858 115 SGDWICTRSGCNEHNFASRMECFRCNAPRD 144 (151)
Q Consensus 115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~ 144 (151)
...|.|+ .|.++|.+....|.+|..+|+
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 3579999 899999999999999999986
No 26
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=96.71 E-value=0.0014 Score=35.71 Aligned_cols=27 Identities=33% Similarity=0.716 Sum_probs=24.9
Q ss_pred CCceEEeCCCCCcccccccccccCCCCCC
Q 031858 115 SGDWICTRSGCNEHNFASRMECFRCNAPR 143 (151)
Q Consensus 115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk 143 (151)
...|.|+ .|.++|......|.+|..++
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCC
Confidence 3579999 89999999999999999987
No 27
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.27 E-value=0.0027 Score=40.53 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=26.5
Q ss_pred CeEeCCCCcccccccccccccCCCCCCC
Q 031858 6 DWNCRSCQHLNFQRRDSCQRCGDPRSSG 33 (151)
Q Consensus 6 dW~C~~C~~~N~~~~~~C~~C~~pkp~~ 33 (151)
.|.|+.|.++|......|-.|.++++..
T Consensus 8 ~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 8 GWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp SEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 7999999999999999999999999864
No 28
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=95.76 E-value=0.0098 Score=36.36 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=27.2
Q ss_pred CCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858 115 SGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146 (151)
Q Consensus 115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~ 146 (151)
...|.|+ .|.++|-.....|.+|..+++..
T Consensus 8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence 3479999 89999999999999999999864
No 29
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=95.46 E-value=0.017 Score=35.23 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=27.2
Q ss_pred CCCcccCCCCCCCccccccccccccCCCCCCC
Q 031858 57 PGDWYCSAGNCGAHNFASRSSCFKCGAFKDDV 88 (151)
Q Consensus 57 ~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~~~ 88 (151)
...|.|+ .|.++|-.....|.+|..+++..
T Consensus 8 ~~~W~Cp--~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCP--GCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence 3489999 99999999999999999999864
No 30
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=95.22 E-value=0.012 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=27.3
Q ss_pred CCceEEeCCCCCcccccccccccCCCCCCCCC
Q 031858 115 SGDWICTRSGCNEHNFASRMECFRCNAPRDFG 146 (151)
Q Consensus 115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~~ 146 (151)
...|.|+ .|.++|-.....|.+|.++++..
T Consensus 6 ~~~W~CP--~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 6 PVGWQCP--GCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CCSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence 3479999 89999999999999999999875
No 31
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=93.62 E-value=0.041 Score=32.67 Aligned_cols=27 Identities=33% Similarity=0.801 Sum_probs=25.1
Q ss_pred CCeEeCCCCcccccccccccccCCCCC
Q 031858 5 GDWNCRSCQHLNFQRRDSCQRCGDPRS 31 (151)
Q Consensus 5 gdW~C~~C~~~N~~~~~~C~~C~~pkp 31 (151)
..|.|++|...|......|.+|-+-|.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred ceEecccccccCCCccchhhHHHhhcc
Confidence 579999999999999999999999875
No 32
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=90.65 E-value=0.047 Score=48.08 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCeEeCCCCcccccc---------cccccccCCCCCCCCCC-CCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCccccc
Q 031858 5 GDWNCRSCQHLNFQR---------RDSCQRCGDPRSSGDFC-GFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHNFAS 74 (151)
Q Consensus 5 gdW~C~~C~~~N~~~---------~~~C~~C~~pkp~~~~~-~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N~a~ 74 (151)
..|+|+-|.|.|-.. .-.|..|+-+.+..... .-....................+=.|+ .|.+.|.++
T Consensus 116 ~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP--~CTF~NHPs 193 (566)
T 1w7p_D 116 STWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICP--ACTFANHPQ 193 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCC--cccccCChh
Confidence 479999999999852 23699999876543110 000000000000000011112356798 999999999
Q ss_pred cccccccCCCCCC
Q 031858 75 RSSCFKCGAFKDD 87 (151)
Q Consensus 75 r~~C~~C~~~~~~ 87 (151)
-..|..|+++.+.
T Consensus 194 l~~CEiCg~~L~~ 206 (566)
T 1w7p_D 194 IGNCEICGHRLPN 206 (566)
T ss_dssp -------------
T ss_pred hhcccccCCcCCC
Confidence 9999999999876
No 33
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=90.47 E-value=0.17 Score=30.00 Aligned_cols=29 Identities=41% Similarity=0.738 Sum_probs=25.7
Q ss_pred CCceEEeCCCCCcccccccccccCCCCCCCC
Q 031858 115 SGDWICTRSGCNEHNFASRMECFRCNAPRDF 145 (151)
Q Consensus 115 ~gdW~C~~~~C~~~Nfa~r~~C~~C~~pk~~ 145 (151)
+..|.|. .|..+|.+-...|++|-+-|..
T Consensus 11 ~D~WkC~--~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 11 ADYWKCT--SCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GGCEECT--TTCCEECSSCSSCTTTCCCCSS
T ss_pred cceEecc--cccccCCCccchhhHHHhhccc
Confidence 4779999 8999999999999999887753
No 34
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=87.22 E-value=0.11 Score=45.63 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred CCCCcccCCCCCCCccccc---------cccccccCCCCCCCCC-CCCCCCCCCCccCCCCCCCCCCCCCCceEEeCCCC
Q 031858 56 RPGDWYCSAGNCGAHNFAS---------RSSCFKCGAFKDDVAG-GGFDCDMPRSRGSSFGGGNRSGWKSGDWICTRSGC 125 (151)
Q Consensus 56 ~~gdW~C~~~~C~~~N~a~---------r~~C~~C~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~gdW~C~~~~C 125 (151)
....|+|+ -|.+.|-.- ...|..|+.+.+-... ......... .+ ............+=.|+ .|
T Consensus 114 ~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~--~~-~~~~~~~~~~~~~~~CP--~C 186 (566)
T 1w7p_D 114 VVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAI--DP-NANPQNQFGVNSENICP--AC 186 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccC--CC-cccCccccccccCCCCC--cc
Confidence 35689999 999999852 3469999988653221 000000000 00 00000001112345799 89
Q ss_pred CcccccccccccCCCCCCCC
Q 031858 126 NEHNFASRMECFRCNAPRDF 145 (151)
Q Consensus 126 ~~~Nfa~r~~C~~C~~pk~~ 145 (151)
.+.|.++-..|.+|+++.+.
T Consensus 187 TF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 187 TFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp --------------------
T ss_pred cccCChhhhcccccCCcCCC
Confidence 99999999999999999876
No 35
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=85.53 E-value=0.58 Score=28.28 Aligned_cols=26 Identities=31% Similarity=0.885 Sum_probs=24.3
Q ss_pred CeEeCCCCcccccccccccccCCCCC
Q 031858 6 DWNCRSCQHLNFQRRDSCQRCGDPRS 31 (151)
Q Consensus 6 dW~C~~C~~~N~~~~~~C~~C~~pkp 31 (151)
-|.|+.|.-.|-.-...|.+|-+-|.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred eeecccccccCCCccchhHHHHHhhc
Confidence 59999999999999999999999875
No 36
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=74.57 E-value=3.4 Score=24.90 Aligned_cols=31 Identities=29% Similarity=0.817 Sum_probs=27.1
Q ss_pred CCCCCCcccCCCCCCCccccccccccccCCCCC
Q 031858 54 DVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKD 86 (151)
Q Consensus 54 ~~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~~~ 86 (151)
...+.-|.|+ .|..+|-+-...|.+|-+-|.
T Consensus 6 ~~~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 6 SGSEDEWQCT--ECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp SCCSCCEECS--SSCCEECSSCCBCTTTCCBCC
T ss_pred CCCcceeecc--cccccCCCccchhHHHHHhhc
Confidence 3456789999 999999999999999988875
No 37
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=73.58 E-value=1.8 Score=26.52 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=21.6
Q ss_pred CeEeCCCCcccccccccccccCC
Q 031858 6 DWNCRSCQHLNFQRRDSCQRCGD 28 (151)
Q Consensus 6 dW~C~~C~~~N~~~~~~C~~C~~ 28 (151)
.++|-.|...|-.+.+.|.+|+.
T Consensus 19 k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhhccccCcCCcccccccCCCC
Confidence 58999999999999999999985
No 38
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=73.34 E-value=5.7 Score=26.05 Aligned_cols=17 Identities=53% Similarity=1.114 Sum_probs=13.2
Q ss_pred CCCCCCCCCcccCCCCCCC
Q 031858 51 TGSDVRPGDWYCSAGNCGA 69 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~ 69 (151)
+.+...+.||.|+ .|+.
T Consensus 52 T~fedlPddW~CP--vCga 68 (81)
T 2kn9_A 52 TRWDDIPDDWSCP--DCGA 68 (81)
T ss_dssp CCTTTSCTTCCCT--TTCC
T ss_pred CChhHCCCCCcCC--CCCC
Confidence 4466778999999 7776
No 39
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=70.84 E-value=9.5 Score=22.70 Aligned_cols=17 Identities=47% Similarity=0.995 Sum_probs=13.4
Q ss_pred CCCCCCCCCcccCCCCCCC
Q 031858 51 TGSDVRPGDWYCSAGNCGA 69 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~ 69 (151)
+.+...+.||.|+ .|+.
T Consensus 28 t~f~~lP~dw~CP--~Cg~ 44 (52)
T 1e8j_A 28 TKFEDLPDDWACP--VCGA 44 (52)
T ss_dssp CCTTSSCTTCCCS--SSCC
T ss_pred CchHHCCCCCcCC--CCCC
Confidence 4567778999999 7776
No 40
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.62 E-value=2.9 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.5
Q ss_pred CCeEeCCCCcccccccccccccCCC
Q 031858 5 GDWNCRSCQHLNFQRRDSCQRCGDP 29 (151)
Q Consensus 5 gdW~C~~C~~~N~~~~~~C~~C~~p 29 (151)
...+|+.|...|-.....|.+|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 3579999999999999999999975
No 41
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=64.54 E-value=3.6 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.770 Sum_probs=18.9
Q ss_pred CeEeCCCCccccccccc---------ccccCCCCC
Q 031858 6 DWNCRSCQHLNFQRRDS---------CQRCGDPRS 31 (151)
Q Consensus 6 dW~C~~C~~~N~~~~~~---------C~~C~~pkp 31 (151)
+|.|+-|.+.|-..... |..|+...+
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 89999999888766554 666665443
No 42
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=62.90 E-value=0.87 Score=24.73 Aligned_cols=12 Identities=50% Similarity=1.365 Sum_probs=9.7
Q ss_pred CCCCCeEeCCCC
Q 031858 2 NRPGDWNCRSCQ 13 (151)
Q Consensus 2 ~k~gdW~C~~C~ 13 (151)
+|+|||-|-+|-
T Consensus 14 pregdwcchkcv 25 (36)
T 4b2u_A 14 PREGDWCCHKCV 25 (36)
T ss_dssp GGGCCSSSSEEE
T ss_pred CCccCeeeeccc
Confidence 578999998774
No 43
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=62.18 E-value=10 Score=23.97 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=13.1
Q ss_pred CCCCCCCCCcccCCCCCCCc
Q 031858 51 TGSDVRPGDWYCSAGNCGAH 70 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~~ 70 (151)
+.+...+.||.|+ .|+..
T Consensus 32 T~f~~lPddw~CP--~Cga~ 49 (70)
T 1dx8_A 32 TPFVDLSDSFMCP--ACRSP 49 (70)
T ss_dssp CCGGGSCTTCBCT--TTCCB
T ss_pred CchhhCCCCCcCC--CCCCC
Confidence 3456678899998 77663
No 44
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=55.41 E-value=14 Score=24.55 Aligned_cols=17 Identities=47% Similarity=1.113 Sum_probs=13.0
Q ss_pred CCCCCCCCCcccCCCCCCC
Q 031858 51 TGSDVRPGDWYCSAGNCGA 69 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~ 69 (151)
+.+..-+.||.|+ .|+.
T Consensus 60 T~fedlPddW~CP--vCga 76 (87)
T 1s24_A 60 TRFEDIPDDWCCP--DCGA 76 (87)
T ss_dssp CCGGGCCTTCCCS--SSCC
T ss_pred CChhHCCCCCCCC--CCCC
Confidence 3466678899999 7876
No 45
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=54.68 E-value=7.8 Score=22.59 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.9
Q ss_pred CeEeCCCCcccc
Q 031858 6 DWNCRSCQHLNF 17 (151)
Q Consensus 6 dW~C~~C~~~N~ 17 (151)
.|.|..|+++-.
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 488888887654
No 46
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=49.15 E-value=14 Score=25.03 Aligned_cols=19 Identities=32% Similarity=1.113 Sum_probs=14.2
Q ss_pred CCCCeEeCCCCcccccccccccccCCC
Q 031858 3 RPGDWNCRSCQHLNFQRRDSCQRCGDP 29 (151)
Q Consensus 3 k~gdW~C~~C~~~N~~~~~~C~~C~~p 29 (151)
+.++|.|+.|. .|..|+..
T Consensus 52 ~~~~W~C~~C~--------~C~vC~~~ 70 (112)
T 3v43_A 52 KALRWQCIECK--------TCSSCRDQ 70 (112)
T ss_dssp HTSCCCCTTTC--------CBTTTCCC
T ss_pred hccccccccCC--------ccccccCc
Confidence 36799999886 57777754
No 47
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=49.11 E-value=6.6 Score=24.01 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCCCcccCCCCCCCccccccccccccCCC
Q 031858 55 VRPGDWYCSAGNCGAHNFASRSSCFKCGAF 84 (151)
Q Consensus 55 ~~~gdW~C~~~~C~~~N~a~r~~C~~C~~~ 84 (151)
..-.-++|- .|+.+|-.+++.|.+|+..
T Consensus 15 ~~~~k~ICr--kC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 15 RVFLKKVCR--KCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CSCCCEEET--TTCCEECTTCSSCTTTCCC
T ss_pred HHhchhhhc--cccCcCCcccccccCCCCC
Confidence 344689999 9999999999999999854
No 48
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=40.35 E-value=12 Score=22.57 Aligned_cols=18 Identities=39% Similarity=0.855 Sum_probs=13.9
Q ss_pred CCCCCCCCCcccCCCCCCCc
Q 031858 51 TGSDVRPGDWYCSAGNCGAH 70 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~~ 70 (151)
+.+...+.||.|+ .|+..
T Consensus 28 t~fe~lP~dw~CP--~Cg~~ 45 (54)
T 4rxn_A 28 TDFKDIPDDWVCP--LCGVG 45 (54)
T ss_dssp CCGGGSCTTCBCT--TTCCB
T ss_pred CChhHCCCCCcCc--CCCCc
Confidence 4566778999999 78763
No 49
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.18 E-value=15 Score=21.80 Aligned_cols=17 Identities=47% Similarity=1.001 Sum_probs=13.3
Q ss_pred CCCCCCCCCcccCCCCCCC
Q 031858 51 TGSDVRPGDWYCSAGNCGA 69 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~ 69 (151)
+.+...+.||.|+ .|+.
T Consensus 27 t~f~~lP~dw~CP--~Cg~ 43 (52)
T 1yk4_A 27 TKFEDLPDDWVCP--LCGA 43 (52)
T ss_dssp CCGGGSCTTCBCT--TTCC
T ss_pred CCHhHCCCCCcCC--CCCC
Confidence 3466778999999 8876
No 50
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=36.01 E-value=15 Score=22.09 Aligned_cols=17 Identities=41% Similarity=1.054 Sum_probs=13.2
Q ss_pred CCCCCCCCCcccCCCCCCC
Q 031858 51 TGSDVRPGDWYCSAGNCGA 69 (151)
Q Consensus 51 ~~~~~~~gdW~C~~~~C~~ 69 (151)
+.+...+.||.|+ .|+.
T Consensus 28 t~f~~lP~dw~CP--~Cga 44 (55)
T 2v3b_B 28 TRWEDIPADWVCP--DCGV 44 (55)
T ss_dssp CCGGGSCTTCCCT--TTCC
T ss_pred CChhHCCCCCcCC--CCCC
Confidence 4466778999999 7876
No 51
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.37 E-value=22 Score=21.36 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=21.5
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCcCcCCCCCCCCCCcccCCCCCCCcc
Q 031858 15 LNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDWYCSAGNCGAHN 71 (151)
Q Consensus 15 ~N~~~~~~C~~C~~pkp~~~~~~~~g~~~~~~~g~~~~~~~~~gdW~C~~~~C~~~N 71 (151)
.+|.....|..|+..... .....|+++|. .||.+=
T Consensus 6 ~~ll~~~~Cp~C~~~~lv--------------------~D~~~ge~vC~--~CGlVl 40 (58)
T 1dl6_A 6 LDALPRVTCPNHPDAILV--------------------EDYRAGDMICP--ECGLVV 40 (58)
T ss_dssp CCCCSCCSBTTBSSSCCE--------------------ECSSSCCEECT--TTCCEE
T ss_pred hhccccccCcCCCCCcee--------------------EeCCCCeEEeC--CCCCEE
Confidence 345556678888753311 23456789998 787653
No 52
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.64 E-value=26 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCCeEeCCCCccccc--ccc-cccccCCCCC
Q 031858 4 PGDWNCRSCQHLNFQ--RRD-SCQRCGDPRS 31 (151)
Q Consensus 4 ~gdW~C~~C~~~N~~--~~~-~C~~C~~pkp 31 (151)
|+.|.|..|+..-.. ... .|..|+.+..
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 678999999986442 334 7999998853
No 53
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=32.39 E-value=57 Score=20.14 Aligned_cols=11 Identities=36% Similarity=1.431 Sum_probs=8.4
Q ss_pred CC-CcccCCCCCCC
Q 031858 57 PG-DWYCSAGNCGA 69 (151)
Q Consensus 57 ~g-dW~C~~~~C~~ 69 (151)
.| +|.|+ .|..
T Consensus 57 ~g~~W~C~--~C~~ 68 (70)
T 3asl_A 57 SEDEWYCP--ECRN 68 (70)
T ss_dssp SSSCCCCT--TTSC
T ss_pred CCCCcCCc--CccC
Confidence 46 99998 7753
No 54
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.86 E-value=28 Score=21.21 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=17.0
Q ss_pred CCCCCeEeCCCCcccccccccccccCC
Q 031858 2 NRPGDWNCRSCQHLNFQRRDSCQRCGD 28 (151)
Q Consensus 2 ~k~gdW~C~~C~~~N~~~~~~C~~C~~ 28 (151)
....++.|..|... ..-..|-.|..
T Consensus 4 ~~~~~~~C~vC~~~--g~ll~CD~C~~ 28 (66)
T 1xwh_A 4 AQKNEDECAVCRDG--GELICCDGCPR 28 (66)
T ss_dssp CCSCCCSBSSSSCC--SSCEECSSCCC
T ss_pred CCCCCCCCccCCCC--CCEEEcCCCCh
Confidence 45678889888864 35666776654
No 55
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=31.07 E-value=15 Score=22.01 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=17.2
Q ss_pred CeEeCCCCcccc----cccccccccCCC
Q 031858 6 DWNCRSCQHLNF----QRRDSCQRCGDP 29 (151)
Q Consensus 6 dW~C~~C~~~N~----~~~~~C~~C~~p 29 (151)
...||.|+...| ..|..|.+|+-.
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 467999987665 456778888753
No 56
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=30.97 E-value=29 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=21.3
Q ss_pred CCCeEeCCCCcccccc-----------------------cccccccCCCCC
Q 031858 4 PGDWNCRSCQHLNFQR-----------------------RDSCQRCGDPRS 31 (151)
Q Consensus 4 ~gdW~C~~C~~~N~~~-----------------------~~~C~~C~~pkp 31 (151)
+..|.|..|++.-... ...|..|+.+..
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 6789999998874322 467999998864
No 57
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.44 E-value=20 Score=23.70 Aligned_cols=12 Identities=33% Similarity=1.090 Sum_probs=9.3
Q ss_pred CCCeEeCCCCcc
Q 031858 4 PGDWNCRSCQHL 15 (151)
Q Consensus 4 ~gdW~C~~C~~~ 15 (151)
+|+|.|+.|...
T Consensus 61 ~g~W~C~~C~~~ 72 (88)
T 1fp0_A 61 GEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCCCSCCCC
T ss_pred CCCcCCccccCC
Confidence 478999888764
No 58
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.31 E-value=22 Score=26.29 Aligned_cols=26 Identities=23% Similarity=0.666 Sum_probs=20.1
Q ss_pred ceEEeCCCCCccccc--ccccccCCCCCCC
Q 031858 117 DWICTRSGCNEHNFA--SRMECFRCNAPRD 144 (151)
Q Consensus 117 dW~C~~~~C~~~Nfa--~r~~C~~C~~pk~ 144 (151)
.|.|. .|+++=.. --..|+.|++|+.
T Consensus 155 ~~~C~--~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCR--NCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEET--TTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEEC--CCCCEeeCCCCCCCCCCCcCCHH
Confidence 69999 89998432 2238999999875
No 59
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=27.75 E-value=75 Score=20.09 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=7.3
Q ss_pred CCCeEeCCC
Q 031858 4 PGDWNCRSC 12 (151)
Q Consensus 4 ~gdW~C~~C 12 (151)
.++|.|+.|
T Consensus 19 ~~~W~C~~C 27 (77)
T 3shb_A 19 DVNRLCRVC 27 (77)
T ss_dssp CTTSCCTTT
T ss_pred CCCCCCCCC
Confidence 478999887
No 60
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.53 E-value=35 Score=23.35 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=19.3
Q ss_pred CeEeCCCCcccc----cccccccccCCCCC
Q 031858 6 DWNCRSCQHLNF----QRRDSCQRCGDPRS 31 (151)
Q Consensus 6 dW~C~~C~~~N~----~~~~~C~~C~~pkp 31 (151)
.-.|-.|++. | ..+.+|..|+...-
T Consensus 67 p~~C~~CG~~-F~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFV-FKAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCB-CCCCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCe-ecccCCCCCCCcCCCCCcc
Confidence 3468899997 7 56788999997653
No 61
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.78 E-value=29 Score=25.33 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=21.2
Q ss_pred CCCcccCCCCCCCcccc-ccccccccCCCCC
Q 031858 57 PGDWYCSAGNCGAHNFA-SRSSCFKCGAFKD 86 (151)
Q Consensus 57 ~gdW~C~~~~C~~~N~a-~r~~C~~C~~~~~ 86 (151)
.--|.|+ .||++-.. --..|+.|++++.
T Consensus 136 ~~~~~C~--~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICP--ICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECT--TTCCEEESCCCSBCTTTCCBGG
T ss_pred CCeeEeC--CCCCeeCCCCCCCCCCCCCCHH
Confidence 4579999 99997543 2348999998874
No 62
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.62 E-value=32 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred CceEEeCCCCCccccccc-ccccCCCCCCC
Q 031858 116 GDWICTRSGCNEHNFASR-MECFRCNAPRD 144 (151)
Q Consensus 116 gdW~C~~~~C~~~Nfa~r-~~C~~C~~pk~ 144 (151)
.-|.|. .|++.-.... ..|..|++++.
T Consensus 170 ~~~~C~--~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCP--ICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEEC--CCCCEEcCcCCCCCCCCCCChH
Confidence 469999 8999844322 48999999875
No 63
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=23.40 E-value=23 Score=21.84 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.1
Q ss_pred CCCeEeCCCCc
Q 031858 4 PGDWNCRSCQH 14 (151)
Q Consensus 4 ~gdW~C~~C~~ 14 (151)
.|+|.|+.|..
T Consensus 48 ~g~W~C~~C~~ 58 (66)
T 2lri_C 48 GTGLRCRSCSG 58 (66)
T ss_dssp SSSCCCTTTTT
T ss_pred CCCEECccccC
Confidence 57999999964
No 64
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.89 E-value=29 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=14.2
Q ss_pred CCCeEeCCC--CcccccccccccccC
Q 031858 4 PGDWNCRSC--QHLNFQRRDSCQRCG 27 (151)
Q Consensus 4 ~gdW~C~~C--~~~N~~~~~~C~~C~ 27 (151)
.|+|.|+.| ..-.-.....|..|-
T Consensus 51 ~g~W~Cp~c~C~~C~k~~~~~C~~Cp 76 (107)
T 4gne_A 51 YGKWECPWHQCDECSSAAVSFCEFCP 76 (107)
T ss_dssp SSCCCCGGGBCTTTCSBCCEECSSSS
T ss_pred CCCEECCCCCCCcCCCCCCcCcCCCC
Confidence 589999954 343334445555554
No 65
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.83 E-value=89 Score=19.07 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred ccCCCCCCCccccccccccccCCCCCCCCC
Q 031858 61 YCSAGNCGAHNFASRSSCFKCGAFKDDVAG 90 (151)
Q Consensus 61 ~C~~~~C~~~N~a~r~~C~~C~~~~~~~~~ 90 (151)
.|+ .|++..+ ...|..|+.+....-+
T Consensus 8 ~C~--~CgvYTL--k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 8 KCP--KCGLYTL--KEICPKCGEKTVIPKP 33 (60)
T ss_dssp ECT--TTCCEES--SSBCSSSCSBCBCCCC
T ss_pred eCC--CCCCEec--cccCcCCCCcCCCCCC
Confidence 477 8988887 7789999988654433
No 66
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.52 E-value=35 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred CCcccCCCCCCCcccccc-ccccccCCCCC
Q 031858 58 GDWYCSAGNCGAHNFASR-SSCFKCGAFKD 86 (151)
Q Consensus 58 gdW~C~~~~C~~~N~a~r-~~C~~C~~~~~ 86 (151)
.-|.|. .||++=.... ..|+.|++++.
T Consensus 170 ~~~~C~--~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCP--ICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECS--SSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEEC--CCCCEEcCcCCCCCCCCCCChH
Confidence 479999 9999854433 58999999874
No 67
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.89 E-value=34 Score=20.02 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=10.9
Q ss_pred eEeCCCCccccc----ccccccccC
Q 031858 7 WNCRSCQHLNFQ----RRDSCQRCG 27 (151)
Q Consensus 7 W~C~~C~~~N~~----~~~~C~~C~ 27 (151)
..||.|+...|- .|..|..|+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSC
T ss_pred ccCCCCCCceEEecCCCeEECCCCC
Confidence 456666653222 355566665
No 68
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.15 E-value=43 Score=22.21 Aligned_cols=20 Identities=30% Similarity=1.087 Sum_probs=14.8
Q ss_pred CCCCeEeCCCCcccccccccccccCCCC
Q 031858 3 RPGDWNCRSCQHLNFQRRDSCQRCGDPR 30 (151)
Q Consensus 3 k~gdW~C~~C~~~N~~~~~~C~~C~~pk 30 (151)
+.+.|.|+.|. .|..|+...
T Consensus 45 ~~~~W~C~~C~--------~C~~C~~~~ 64 (111)
T 2ysm_A 45 KRAGWQCPECK--------VCQNCKQSG 64 (111)
T ss_dssp TSTTCCCTTTC--------CCTTTCCCS
T ss_pred cccCccCCcCC--------cccccCccC
Confidence 35789999886 577787653
Done!