BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031859
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/148 (68%), Positives = 126/148 (85%), Gaps = 1/148 (0%)
Query: 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
VV+QLQ+QF D+ SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD KLIN+M+
Sbjct: 5 VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMS 64
Query: 63 RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
+LE+P VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+ CD QNREGC+RCLQQV
Sbjct: 65 ISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVD 124
Query: 122 HEYTMLKSKLQTLFRMEQQILAAGGSVP 149
+EY MLK+KLQ LF +E+QIL AGG++P
Sbjct: 125 YEYKMLKTKLQDLFNLEKQILQAGGTIP 152
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 119/148 (80%), Gaps = 1/148 (0%)
Query: 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
+++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI++MA
Sbjct: 4 LIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMA 63
Query: 63 RALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
RAL+Q VDFK V S VHQLKGSSSS+GA RVK +C+ + CD+QN EGC+RCLQQV
Sbjct: 64 RALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVD 123
Query: 122 HEYTMLKSKLQTLFRMEQQILAAGGSVP 149
EY LK+KLQ LF +EQQI+ AGG +P
Sbjct: 124 IEYKTLKAKLQDLFNLEQQIVQAGGRIP 151
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 120/148 (81%), Gaps = 1/148 (0%)
Query: 3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
+++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D KLI++MA
Sbjct: 4 LIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMA 63
Query: 63 RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
RAL+ VDF QV + VHQLKGSSSS+GA RVK +C++F+ C+A+N EGC+RCLQQV
Sbjct: 64 RALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVD 123
Query: 122 HEYTMLKSKLQTLFRMEQQILAAGGSVP 149
EY LK+KLQ +F +E+QI+ AGG VP
Sbjct: 124 IEYKALKTKLQDMFNLEKQIIQAGGIVP 151
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 119/149 (79%), Gaps = 1/149 (0%)
Query: 1 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
MD+V Q QK D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N
Sbjct: 1 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59
Query: 61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
++ +L+Q VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV
Sbjct: 60 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQV 119
Query: 121 SHEYTMLKSKLQTLFRMEQQILAAGGSVP 149
EY ++K++L+TLF++EQQI+A+GG +P
Sbjct: 120 KQEYYLVKNRLETLFKLEQQIVASGGMIP 148
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Query: 7 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
L+ Q SS++ +G VD+QF QL LQDE +P FV EV +LF DDA+++IN +A L
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66 EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYT 125
EQP V+F +VD++VHQLKGSS+S+GA +VK C+ FR FC ++R+GC+ L V +++
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 126 MLKSKLQTLFRMEQQILA 143
L++K QT+ ++EQQI A
Sbjct: 126 DLRNKFQTMLQLEQQIQA 143
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 89/119 (74%)
Query: 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
+GY+D+QF +L +LQD+++P+FV EV++L+F D+ +LIN++ +ALE+ DF ++DS++H
Sbjct: 9 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68
Query: 81 QLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQ 139
Q KGSS+SIGA +VK C FR +C A N EGC+R QQ+ E++ L+ KL+ F+ Q
Sbjct: 69 QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQASQ 127
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
V +LQ +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EKL+ ++
Sbjct: 6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65
Query: 64 A-LEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSH 122
+++ D+K++ H++QL GSSSSIGA RV+NVC+AFRS + NR GC+R L+ V H
Sbjct: 66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEH 125
Query: 123 EYTMLKSKLQTLFRMEQQ-ILAAGGSVPL 150
EY LK+ + LF++EQQ ILAAG P+
Sbjct: 126 EYHYLKNMMHELFQLEQQRILAAGVRYPM 154
>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1
Length = 295
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
F QL ++ D+ +F + +F+ AE I + +ALE D K++ S H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALE--AKDLKKLSSLGHFLKGSSA 228
Query: 88 SIGALRVKNVCIAFRSFCDAQNREGCMR 115
+G +++ VC +++ ++R+G M+
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDGVMK 256
>sp|Q54RR8|RDEA_DICDI Phosphorelay intermediate protein rdeA OS=Dictyostelium discoideum
GN=rdeA PE=1 SV=1
Length = 254
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKN 96
E +F E+ + E+ + + + E D K H H +KGSSS IG V+
Sbjct: 24 EGEKEFTFELLDSYISSVEEHLPELLNSFE--AKDLKGAVLHSHDIKGSSSYIGCEAVRY 81
Query: 97 VCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRM 137
V ++C +N E L++ Y LK +++ +F++
Sbjct: 82 VSGKIEAYC--KNDE-----LEKAESFYPELKKEVEEVFKI 115
>sp|C5BS89|NRDR_TERTT Transcriptional repressor NrdR OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=nrdR PE=3 SV=1
Length = 155
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 53 DAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
D EKL N + RALE+ V + +++ +H ++ ++G +K++ I + + QN
Sbjct: 62 DEEKLRNGLQRALEKRPVSVEAIETALHNVRHYLQALGEREIKSLVIGEKVMEELQN 118
>sp|A2ALK8|PTN3_MOUSE Tyrosine-protein phosphatase non-receptor type 3 OS=Mus musculus
GN=Ptpn3 PE=2 SV=1
Length = 913
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 24/114 (21%)
Query: 7 LQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFF-------DDAEKLIN 59
+Q F DF+SS++ GY+ D SQ Q++ DF+ +V SL +AE
Sbjct: 154 VQSHFGDFNSSIHHPGYLAD--SQFIPDQND---DFLSKVESLHEQHSGLKQSEAESCYI 208
Query: 60 SMARALEQPCVDFKQVDSH----VHQLK---GSSSSIGALRVKNVCIAFRSFCD 106
++AR L DF V+ H +H L G +S+ A+ K +C +F + +
Sbjct: 209 NIARTL-----DFYGVELHGGRDLHNLDLMIGIASAGIAVYRKYICTSFYPWVN 257
>sp|A3DKB6|SYA_CLOTH Alanine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405
/ DSM 1237) GN=alaS PE=3 SV=1
Length = 880
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 45 EVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRVKNV 97
E A FD+ EKL+ +A+ L+ P K+++S ++++K + I LR K V
Sbjct: 703 EAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQLRSKLV 756
>sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22
PE=1 SV=3
Length = 908
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 25 DDQFSQLHKLQDESSPDFVVEVASL---FFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81
DDQF+ + L+D+ +P+ V+ V + F ++ EK +A+++ +D DS+ Q
Sbjct: 363 DDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY-----KAIKKEILDEGDTDSNTDQ 417
Query: 82 LKGSS 86
GSS
Sbjct: 418 DAGSS 422
>sp|Q5RA93|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22
PE=2 SV=1
Length = 908
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 25 DDQFSQLHKLQDESSPDFVVEVASL---FFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81
DDQF+ + L+D+ +P+ V+ V + F ++ EK +A+++ +D DS+ Q
Sbjct: 363 DDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY-----KAIKKEILDEGDTDSNTDQ 417
Query: 82 LKGSS 86
GSS
Sbjct: 418 DAGSS 422
>sp|Q8C5N3|CWC22_MOUSE Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22
PE=1 SV=1
Length = 908
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 25 DDQFSQLHKLQDESSPDFVVEVASL---FFDDAEKLINSMARALEQPCVDFKQVDSHVHQ 81
DDQF+ + L+D+ +P+ V+ V + F ++ EK +A+++ +D DS+ Q
Sbjct: 361 DDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKY-----KAIKKEILDEGDSDSNTDQ 415
Query: 82 LKGSS 86
GSS
Sbjct: 416 GAGSS 420
>sp|B5ED20|GATB_GEOBB Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
DSM 16622) GN=gatB PE=3 SV=1
Length = 488
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Query: 52 DDAEKLINSMARALEQPCVDFKQVDSHVHQ------LKGSSSSIGALRVKNVCIAFRSFC 105
+DA KL+++ ++ CVD + + + + ++ +I L+ + + + C
Sbjct: 125 EDAGKLVHADIPGVDDSCVDLNRACTPLLEIVSEPDMRSPDEAIAYLKKLHQIVMYLGIC 184
Query: 106 DAQNREGCMRCLQQVS------------------HEYTMLKSKLQTLFRMEQQILAAGGS 147
D EG RC VS + + +K ++ + +IL GG
Sbjct: 185 DGNLEEGSFRCDANVSLMPVGSNVFGTRAELKNINSFKFIKQAIEYEIERQAEILDDGGK 244
Query: 148 VPLE 151
V E
Sbjct: 245 VVQE 248
>sp|C6E6Z3|GATB_GEOSM Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Geobacter sp. (strain M21) GN=gatB PE=3 SV=1
Length = 479
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 24/124 (19%)
Query: 52 DDAEKLINSMARALEQPCVDFKQVDSHVHQ------LKGSSSSIGALRVKNVCIAFRSFC 105
+DA KL+++ ++ CVD + + + + ++ +I L+ + + + C
Sbjct: 125 EDAGKLVHADIPGVDDSCVDLNRACTPLLEIVSEPDMRSPDEAIAYLKKLHQIVMYLGIC 184
Query: 106 DAQNREGCMRCLQQVS------------------HEYTMLKSKLQTLFRMEQQILAAGGS 147
D EG RC VS + + +K ++ + +IL GG
Sbjct: 185 DGNLEEGSFRCDANVSLMPVGSNVFGTRAELKNINSFKFIKQAIEYEIERQAEILDDGGK 244
Query: 148 VPLE 151
V E
Sbjct: 245 VIQE 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,837,635
Number of Sequences: 539616
Number of extensions: 1657248
Number of successful extensions: 4460
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4439
Number of HSP's gapped (non-prelim): 28
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)