Query 031859
Match_columns 151
No_of_seqs 136 out of 1009
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 3E-35 1E-39 216.4 19.9 147 4-150 3-149 (153)
2 1yvi_A Histidine-containing ph 100.0 4.5E-31 1.5E-35 193.1 18.3 145 4-148 3-148 (149)
3 2r25_A Phosphorelay intermedia 99.9 1.2E-23 4.1E-28 155.8 12.7 116 18-136 3-164 (167)
4 2a0b_A HPT domain; sensory tra 99.9 1.7E-21 5.9E-26 137.8 10.4 120 17-140 5-124 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 2.3E-19 8E-24 126.4 13.4 113 20-137 2-115 (119)
6 3iqt_A Signal transduction his 99.8 8.1E-19 2.8E-23 124.4 11.7 110 21-135 12-122 (123)
7 1y6d_A Phosphorelay protein LU 99.7 4.5E-19 1.5E-23 125.1 1.4 109 22-134 10-118 (120)
8 2ooc_A Histidine phosphotransf 99.7 2.3E-16 7.9E-21 110.1 8.5 102 21-137 8-109 (113)
9 1sr2_A Putative sensor-like hi 99.6 3.3E-16 1.1E-20 109.9 7.6 87 39-127 29-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 2.7E-14 9.2E-19 97.8 9.0 89 43-133 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 1.2E-12 4.1E-17 94.2 9.0 89 44-134 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 1.1E-12 3.6E-17 95.2 7.5 65 43-109 5-80 (146)
13 2lch_A Protein OR38; structura 99.4 1.7E-12 5.7E-17 90.1 7.7 90 43-132 4-102 (113)
14 3kyj_A CHEA3, putative histidi 99.0 1.2E-09 4.1E-14 79.0 9.3 92 43-134 9-109 (144)
15 2lp4_A Chemotaxis protein CHEA 98.8 2.3E-08 7.9E-13 76.9 9.6 63 43-105 5-73 (225)
16 3zsu_A TLL2057 protein, cyanoq 92.0 2.1 7.1E-05 29.9 9.6 76 52-136 31-124 (130)
17 3ls0_A SLL1638 protein, PSBQ; 91.0 2.9 0.0001 29.2 10.6 77 52-137 33-128 (133)
18 1vyk_A Oxygen-evolving enhance 82.2 11 0.00038 26.7 10.6 76 52-136 53-146 (149)
19 1gp8_A Protein (scaffolding pr 81.4 4.1 0.00014 22.3 4.6 24 59-84 15-38 (40)
20 3uo3_A J-type CO-chaperone JAC 77.8 9.7 0.00033 27.6 7.3 42 92-134 132-173 (181)
21 3hho_A CO-chaperone protein HS 76.6 11 0.00039 27.0 7.3 64 59-133 103-167 (174)
22 3bvo_A CO-chaperone protein HS 73.6 9.2 0.00032 28.4 6.3 24 57-82 167-190 (207)
23 1fpo_A HSC20, chaperone protei 69.0 17 0.0006 25.9 6.8 38 94-132 125-162 (171)
24 3zbh_A ESXA; unknown function, 51.8 40 0.0014 20.8 8.4 19 71-89 10-28 (99)
25 3gwk_C SAG1039, putative uncha 48.7 46 0.0016 20.6 9.0 70 70-140 8-80 (98)
26 4ioe_A Secreted protein ESXB; 47.6 46 0.0016 20.3 6.5 21 70-90 9-29 (93)
27 2vs0_A Virulence factor ESXA; 46.3 49 0.0017 20.2 9.1 70 70-140 6-78 (97)
28 2di0_A Activating signal coint 45.1 19 0.00064 22.3 2.9 44 20-63 9-52 (71)
29 2y44_A GARP, glutamic acid/ala 41.4 1E+02 0.0035 22.5 9.1 83 45-133 90-172 (184)
30 2f4m_B UV excision repair prot 39.0 60 0.002 19.3 4.4 37 26-63 11-47 (61)
31 2p1h_A APAF-1, apoptotic prote 31.6 43 0.0015 20.9 3.1 62 14-79 27-89 (94)
32 3zta_A MTR, anti-sigma-factor 27.0 1.4E+02 0.0048 19.8 6.7 68 5-89 56-123 (146)
33 3do9_A UPF0302 protein BA_1542 25.9 1.7E+02 0.0059 21.2 5.9 41 43-87 142-182 (188)
34 2cw9_A Translocase of inner mi 25.6 49 0.0017 23.9 2.9 32 48-81 55-87 (194)
35 3p9y_A CG14216, LD40846P; phos 25.1 63 0.0021 23.9 3.3 17 87-103 152-168 (198)
36 4dvz_A Cytotoxicity-associated 24.2 3.1E+02 0.011 22.7 8.4 49 53-105 479-533 (569)
37 2xus_A Breast cancer metastasi 24.2 48 0.0017 18.9 2.0 21 2-22 13-33 (49)
38 2r6a_C DNAG primase, helicase 23.9 1.2E+02 0.0042 19.7 4.6 44 71-117 87-130 (143)
39 4h3k_B RNA polymerase II subun 23.9 85 0.0029 23.5 3.9 19 86-104 167-185 (214)
40 2qsf_X RAD23, UV excision repa 23.4 1.1E+02 0.0036 22.1 4.3 38 25-63 32-69 (171)
41 1pve_A HHR23B, UV excision rep 23.2 39 0.0013 20.9 1.7 37 26-63 13-49 (72)
42 2p06_A Hypothetical protein AF 22.6 1.5E+02 0.005 18.9 4.3 21 57-79 68-88 (114)
43 3nmd_A CGMP dependent protein 22.5 1.4E+02 0.0049 18.3 4.8 55 80-134 7-66 (72)
44 3fav_B ESAT-6, 6 kDa early sec 20.0 1.6E+02 0.0054 17.8 6.9 69 70-139 5-76 (94)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=3e-35 Score=216.45 Aligned_cols=147 Identities=57% Similarity=1.040 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHhhhhccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhh
Q 031859 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK 83 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 83 (151)
+.+|+.++.+|.++++++|++|++|++|.+|.++++++|+.+++..|++++++.+..|+.+++.++.|+..+.+++|+||
T Consensus 3 ~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 82 (153)
T 3us6_A 3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK 82 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999887669999999999999
Q ss_pred hhhhhhcHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCCCC
Q 031859 84 GSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVPL 150 (151)
Q Consensus 84 Gss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 150 (151)
|||+|+||.+|+.+|..||.+++.++.+++...+.+++.+|.+++.+|++|++.++|+.+++|++|.
T Consensus 83 Gss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~~~~ 149 (153)
T 3us6_A 83 GSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPM 149 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.98 E-value=4.5e-31 Score=193.15 Aligned_cols=145 Identities=47% Similarity=0.807 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHhhhhccCchHHHHHHHhccccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhh
Q 031859 4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESS-PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQL 82 (151)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ld~~f~~L~~L~~~~~-~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 82 (151)
+.+|+.++.+++++++++|++|+.|++|..|.++++ ++|+.+++..|+++++..+..|..+++.++.|+..+..++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 678999999999999999999988999999987778 9999999999999999999999999987644799999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Q 031859 83 KGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSV 148 (151)
Q Consensus 83 KGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 148 (151)
||||+|+||.+|+.+|..||.+++.++.+.+...+.+++.+|.+++.+|++|++.++|++|++|++
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~~~~ 148 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYDPKQ 148 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999874
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.91 E-value=1.2e-23 Score=155.78 Aligned_cols=116 Identities=21% Similarity=0.387 Sum_probs=107.4
Q ss_pred hhhccCch-HHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHhHhhhhhhhhhcHHHHH
Q 031859 18 LYREGYVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRVK 95 (151)
Q Consensus 18 ~~~~~~ld-~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGss~~lGa~~L~ 95 (151)
..+.|++| .+|++|.+|.+++ |+|+.+++..|++++++.+..|+.|++ .+ ||..+..++|+|||||+|+||.+|.
T Consensus 3 ~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV~ 79 (167)
T 2r25_A 3 TIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRIA 79 (167)
T ss_dssp CCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34678999 5899999998766 999999999999999999999999999 88 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q 031859 96 NVCIAFRSFCDAQN------------RE--------------------------------GCMRCLQQVSHEYTMLKSKL 131 (151)
Q Consensus 96 ~~c~~LE~a~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~l~~~L 131 (151)
.+|.+||.+|+.++ .. .+...+.+++.+|..++.+|
T Consensus 80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L 159 (167)
T 2r25_A 80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL 159 (167)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888 33 57789999999999999999
Q ss_pred HHHHH
Q 031859 132 QTLFR 136 (151)
Q Consensus 132 ~~~~~ 136 (151)
++|++
T Consensus 160 ~~~~~ 164 (167)
T 2r25_A 160 SKYYN 164 (167)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99986
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.86 E-value=1.7e-21 Score=137.83 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=106.2
Q ss_pred hhhhccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHH
Q 031859 17 SLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKN 96 (151)
Q Consensus 17 ~~~~~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~ 96 (151)
...+.+++|.. .|..|....+++++.+++..|+++.++.+..|..++..+ |+..+.+.+|+|||+|+++|+..|+.
T Consensus 5 ~~~~~~~lD~~--~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 5 NSKSEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp -CHHHHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34456678855 555555556789999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 97 VCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQ 140 (151)
Q Consensus 97 ~c~~LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~ 140 (151)
+|..+|.+++.++...+...+.+|...|.++...|..|+...++
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~ 124 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATK 124 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999888888889999999999999999999987553
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.82 E-value=2.3e-19 Score=126.44 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=101.0
Q ss_pred hccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHH
Q 031859 20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI 99 (151)
Q Consensus 20 ~~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~ 99 (151)
|-.++|.. ....+ .+|++++..+++..|+++.++++..|+.++..+ ||..+.+.+|+|||+|+++|+.+|..+|.
T Consensus 2 ~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~ 76 (119)
T 3myf_A 2 DLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ 76 (119)
T ss_dssp CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 44566754 44332 478999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 100 AFRSFCDAQN-REGCMRCLQQVSHEYTMLKSKLQTLFRM 137 (151)
Q Consensus 100 ~LE~a~~~~~-~~~~~~~~~~l~~~~~~l~~~L~~~~~~ 137 (151)
.||.+++.+. .+.+...+..+..++..+..+++.|+..
T Consensus 77 ~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 77 EIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999985 4677888999999999999999999875
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.79 E-value=8.1e-19 Score=124.37 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=97.5
Q ss_pred ccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHH
Q 031859 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA 100 (151)
Q Consensus 21 ~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~ 100 (151)
.+++|.. .+..+ .+|++++..+++..|+++.++++..|+.++..+ ||..+.+++|+|||+|+++|+.+|..+|..
T Consensus 12 ~~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3566654 44442 578999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 101 FRSFCDAQNR-EGCMRCLQQVSHEYTMLKSKLQTLF 135 (151)
Q Consensus 101 LE~a~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~~ 135 (151)
||++++.+.. +.+...+..+..++..+..+.+.|+
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999864 4777888999999999999888875
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.73 E-value=4.5e-19 Score=125.13 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=89.7
Q ss_pred cCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHH
Q 031859 22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAF 101 (151)
Q Consensus 22 ~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~L 101 (151)
+.+|. .++..|++..+++++.+++..|++++++.+..|+.+...+ |+..+.+.+|+|||||+++|+..|+++|..+
T Consensus 10 ~~~d~--~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~l 85 (120)
T 1y6d_A 10 DVLNQ--QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAI 85 (120)
T ss_dssp TTTTT--THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred ccccH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHH
Confidence 44444 4888888777899999999999999999999999887777 8888999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 102 RSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTL 134 (151)
Q Consensus 102 E~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 134 (151)
|..++.|+...+......+...+.+....+..+
T Consensus 86 E~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 86 DKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 999999876644444455566666666655544
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.66 E-value=2.3e-16 Score=110.08 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=85.5
Q ss_pred ccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHH
Q 031859 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA 100 (151)
Q Consensus 21 ~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~ 100 (151)
.+.+|.. .|..+ +.++++|+.+++..|++++++.+..|..+ .. || ++++|+|||+|+++|+.+|.++|..
T Consensus 8 ~~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~ 77 (113)
T 2ooc_A 8 SGAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCER 77 (113)
T ss_dssp -CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3456644 45443 57889999999999999999999999887 44 66 8999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 101 FRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRM 137 (151)
Q Consensus 101 LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~ 137 (151)
+|..++. ....+..|..++.++..+|..++..
T Consensus 78 lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~ 109 (113)
T 2ooc_A 78 CEAGQES-----LEGVRTALDAALLDIAAYAHEQALR 109 (113)
T ss_dssp HHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998876 3456788999999999998887753
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.65 E-value=3.3e-16 Score=109.86 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 031859 39 SPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQ 118 (151)
Q Consensus 39 ~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~~~ 118 (151)
.+..-.+++..|+++.++++..|..++..+ ||..+++.+|+|||+++++|++.|.++|..+|.+++.++...+...+.
T Consensus 29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~ 106 (116)
T 1sr2_A 29 AQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYIS 106 (116)
T ss_dssp HHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567899999999999999999999999 999999999999999999999999999999999999998877777777
Q ss_pred HHHHHHHHH
Q 031859 119 QVSHEYTML 127 (151)
Q Consensus 119 ~l~~~~~~l 127 (151)
+|...+.++
T Consensus 107 ~L~~~l~~L 115 (116)
T 1sr2_A 107 DIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776666543
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.54 E-value=2.7e-14 Score=97.77 Aligned_cols=89 Identities=13% Similarity=0.261 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--------CCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHH---hhcCHH
Q 031859 43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNRE 111 (151)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~ 111 (151)
+.+++..|+++.++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+.++|+.+|... +.+...
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999985 33 67899999999999999999999999999999876 566655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031859 112 GCMRCLQQVSHEYTMLKSKLQT 133 (151)
Q Consensus 112 ~~~~~~~~l~~~~~~l~~~L~~ 133 (151)
.....+..+...+..+...+..
T Consensus 81 ~~~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 81 ITSDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777776653
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.40 E-value=1.2e-12 Score=94.16 Aligned_cols=89 Identities=13% Similarity=0.266 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--------CCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHH---hhcCHHH
Q 031859 44 VEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREG 112 (151)
Q Consensus 44 ~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~ 112 (151)
.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+.++|..+|... +.+....
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~ 80 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI 80 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999999999983 44 78999999999999999999999999999999865 5665433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031859 113 CMRCLQQVSHEYTMLKSKLQTL 134 (151)
Q Consensus 113 ~~~~~~~l~~~~~~l~~~L~~~ 134 (151)
....+..+...+..+...+...
T Consensus 81 ~~~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 81 TSDLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666665544
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.37 E-value=1.1e-12 Score=95.17 Aligned_cols=65 Identities=17% Similarity=0.368 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--------CCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHH---HhhcC
Q 031859 43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQN 109 (151)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~ 109 (151)
+.+++..|++++++.+..|+.++. .. ++..+.+.+|+|||+|+++|+..+.++|..+|.. .+.+.
T Consensus 5 ~~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~ 80 (146)
T 1i5n_A 5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGE 80 (146)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999982 23 4689999999999999999999999999999987 55654
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.36 E-value=1.7e-12 Score=90.06 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCC---CHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHH---HhhcCHHHH
Q 031859 43 VVEVASLFFDDAEKLINSMARALEQ---PCV---DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNREGC 113 (151)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~~~~ 113 (151)
..+++..|++++++.+..|..++.. .+. ++..+.+.+|+|||+|+++|+..+.++|+.+|.. .+.+.....
T Consensus 4 ~~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~ 83 (113)
T 2lch_A 4 HQEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKIT 83 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3578999999999999999998731 111 3567999999999999999999999999999974 455554433
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031859 114 MRCLQQVSHEYTMLKSKLQ 132 (151)
Q Consensus 114 ~~~~~~l~~~~~~l~~~L~ 132 (151)
...+..+...+..+...+.
T Consensus 84 ~~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 84 SDLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555543
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.04 E-value=1.2e-09 Score=78.99 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCCCC---HHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHH---hhcCHHHH
Q 031859 43 VVEVASLFFDDAEKLINSMARALE---QPCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGC 113 (151)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~ 113 (151)
..+++..|++++.+.+..|...+. ..+.| ...+.+.+|+|||+|+++|+..+.++|..+|... +.+...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 568999999999999999998863 22213 4579999999999999999999999999999865 45543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031859 114 MRCLQQVSHEYTMLKSKLQTL 134 (151)
Q Consensus 114 ~~~~~~l~~~~~~l~~~L~~~ 134 (151)
...+..+...+..+...+...
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~ 109 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEET 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544433
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.81 E-value=2.3e-08 Score=76.88 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCCCC---HHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 031859 43 VVEVASLFFDDAEKLINSMARALE---QPCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC 105 (151)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~ 105 (151)
+.+++..|+.++.+.+..|+..+. .++.| ...+.|.+|+|||+|+.+|+..+.++|+.+|+..
T Consensus 5 ~~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l 73 (225)
T 2lp4_A 5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLL 73 (225)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 346889999999999999998862 33224 3578999999999999999999999999999865
No 16
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=91.99 E-value=2.1 Score=29.88 Aligned_cols=76 Identities=4% Similarity=0.067 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhh------------------cHHHHHHHHHHHHHHHhhcCHHHH
Q 031859 52 DDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSI------------------GALRVKNVCIAFRSFCDAQNREGC 113 (151)
Q Consensus 52 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~l------------------Ga~~L~~~c~~LE~a~~~~~~~~~ 113 (151)
.++.+.+.+|...++++ ||..++...|.--|..+.= =+..|.+-..+|-.+++..+...
T Consensus 31 ~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~- 107 (130)
T 3zsu_A 31 EKNAERFADLEVSVAKG--DWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTV- 107 (130)
T ss_dssp HHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHHhhc--chHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45567789999999999 9999999999765543311 12234444555555666665543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031859 114 MRCLQQVSHEYTMLKSKLQTLFR 136 (151)
Q Consensus 114 ~~~~~~l~~~~~~l~~~L~~~~~ 136 (151)
....|.++...+++|++
T Consensus 108 ------a~k~Y~~a~adfdafl~ 124 (130)
T 3zsu_A 108 ------AQEGFREAEADFKAYLN 124 (130)
T ss_dssp ------HHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 34556666666666654
No 17
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=90.97 E-value=2.9 Score=29.21 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=48.3
Q ss_pred HHHHHHHHH-HHHHHcCCCCCHHHHHHHhHhhhhhhh--------hh----------cHHHHHHHHHHHHHHHhhcCHHH
Q 031859 52 DDAEKLINS-MARALEQPCVDFKQVDSHVHQLKGSSS--------SI----------GALRVKNVCIAFRSFCDAQNREG 112 (151)
Q Consensus 52 ~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGss~--------~l----------Ga~~L~~~c~~LE~a~~~~~~~~ 112 (151)
.++.+.+.+ |...++++ ||..++...|.--|..+ ++ =+..|.+-..+|-.+++..+..
T Consensus 33 ~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~- 109 (133)
T 3ls0_A 33 AVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGS- 109 (133)
T ss_dssp HHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHH-
Confidence 455677788 99999999 99999999997655432 21 1122333444444555555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 113 CMRCLQQVSHEYTMLKSKLQTLFRM 137 (151)
Q Consensus 113 ~~~~~~~l~~~~~~l~~~L~~~~~~ 137 (151)
.....|.++...+++|++.
T Consensus 110 ------~a~k~Y~~a~adfdafl~l 128 (133)
T 3ls0_A 110 ------QAKIQYQEALADFDSFLNL 128 (133)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHh
Confidence 3455666666667777543
No 18
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=82.19 E-value=11 Score=26.68 Aligned_cols=76 Identities=5% Similarity=0.052 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhh--------hhhhc----------HHHHHHHHHHHHHHHhhcCHHHH
Q 031859 52 DDAEKLINSMARALEQPCVDFKQVDSHVHQLKGS--------SSSIG----------ALRVKNVCIAFRSFCDAQNREGC 113 (151)
Q Consensus 52 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs--------s~~lG----------a~~L~~~c~~LE~a~~~~~~~~~ 113 (151)
+++.+.+..++..++++ +|..++...|.=-|. ..++. +..|+....+|..+++..+...+
T Consensus 53 k~~a~~i~~vk~lI~k~--~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a 130 (149)
T 1vyk_A 53 KVSASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEA 130 (149)
T ss_dssp HHHHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhc--cHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44556667788889999 999998887753221 11111 24456666666677777776555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031859 114 MRCLQQVSHEYTMLKSKLQTLFR 136 (151)
Q Consensus 114 ~~~~~~l~~~~~~l~~~L~~~~~ 136 (151)
.. .|..+...|+.|++
T Consensus 131 ~~-------~Y~~t~~~ld~vl~ 146 (149)
T 1vyk_A 131 EK-------YYGQTVSNINEVLA 146 (149)
T ss_dssp HH-------HHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHH
Confidence 44 45555555555554
No 19
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=81.40 E-value=4.1 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHhHhhhh
Q 031859 59 NSMARALEQPCVDFKQVDSHVHQLKG 84 (151)
Q Consensus 59 ~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (151)
.+|--|.+++ ||++++.+=|+||+
T Consensus 15 QqiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 15 KQMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 4566778999 99999999999987
No 20
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=77.82 E-value=9.7 Score=27.64 Aligned_cols=42 Identities=5% Similarity=0.161 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 92 LRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTL 134 (151)
Q Consensus 92 ~~L~~~c~~LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 134 (151)
..+..+...|+.+...++.+.+...+.+| .-|..+...+..|
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL-~y~~kl~~~ik~w 173 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVEL-KYWYNLAKAFKDW 173 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 34556666666666666666665555544 3455555555544
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=76.57 E-value=11 Score=26.99 Aligned_cols=64 Identities=5% Similarity=0.038 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCCC-HHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 59 NSMARALEQPCVD-FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQT 133 (151)
Q Consensus 59 ~~L~~a~~~~~~D-~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 133 (151)
+.|..+-... | -..+..+...++. .+..+...|+.+...++...+...+.+|+ -|.++...+..
T Consensus 103 E~le~~~~~~--d~~~~l~~l~~~~~~--------~~~~~~~~l~~~~~~~d~~~A~~~~~kL~-f~~kl~~~i~~ 167 (174)
T 3hho_A 103 EELESVTACA--DPEAALVAFDTKVTA--------MQRHYLAQLQGQLAQSEWLAAADQIRKLK-FIAKLKNEVER 167 (174)
T ss_dssp HHHHHHTSSS--SHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHhhcc--chHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444 5 4455555555443 34556666666666677666655444442 33444444433
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=73.60 E-value=9.2 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhHhh
Q 031859 57 LINSMARALEQPCVDFKQVDSHVHQL 82 (151)
Q Consensus 57 ~l~~L~~a~~~~~~D~~~l~~~aH~L 82 (151)
....|..++..+ ||..+...+.+|
T Consensus 167 ~~~~l~~~~~~~--d~~~A~~~v~kL 190 (207)
T 3bvo_A 167 FTDNVSSAFEQD--DFEEAKEILTKM 190 (207)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 334444444444 555544444443
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=68.99 E-value=17 Score=25.91 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 94 VKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQ 132 (151)
Q Consensus 94 L~~~c~~LE~a~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 132 (151)
+..+...|+.+...++.+.+...+.+++ -|.++...+.
T Consensus 125 ~~~~~~~l~~~~~~~~~~~A~~~~~kl~-y~~kl~~~i~ 162 (171)
T 1fpo_A 125 FDTRHQLMVEQLDNETWDAAADTCRKLR-FLDKLRSSAE 162 (171)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444555555555556655555444443 2334444443
No 24
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=51.75 E-value=40 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.7
Q ss_pred CHHHHHHHhHhhhhhhhhh
Q 031859 71 DFKQVDSHVHQLKGSSSSI 89 (151)
Q Consensus 71 D~~~l~~~aH~LKGss~~l 89 (151)
|++.+...+-.++..+..+
T Consensus 10 ~~~~l~~~A~~~~~~~~~i 28 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNV 28 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5555666655555555444
No 25
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=48.73 E-value=46 Score=20.64 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=35.7
Q ss_pred CCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHHh--hc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD--AQ-NREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQ 140 (151)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~--~~-~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~ 140 (151)
++++.+...|-.++..+..+-- .+..+...+....- .| ....+...+.+....+.++...|..+-...++
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTE-VLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777666532 23333334443321 12 22344455555555555555555554444433
No 26
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=47.60 E-value=46 Score=20.32 Aligned_cols=21 Identities=5% Similarity=0.166 Sum_probs=13.2
Q ss_pred CCHHHHHHHhHhhhhhhhhhc
Q 031859 70 VDFKQVDSHVHQLKGSSSSIG 90 (151)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lG 90 (151)
+|++.+...|-.+++.+..+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~ 29 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQ 29 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 366666766666666665553
No 27
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=46.33 E-value=49 Score=20.24 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=40.7
Q ss_pred CCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHH--hhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC--DAQ-NREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQ 140 (151)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~--~~~-~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~ 140 (151)
+|++.+...+.++++.+..+-. .+..+...+.... =.| ....+...+.+....+..+...|..+-...++
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888777642 2333344444322 123 23345556666666666666666665554444
No 28
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=45.06 E-value=19 Score=22.32 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=35.4
Q ss_pred hccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (151)
Q Consensus 20 ~~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (151)
+...+++.++++.+|..+.+..|+..++..|=.+.+..+..|-.
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 33445677889999998889999999999998888887777643
No 29
>2y44_A GARP, glutamic acid/alanine-rich protein; membrane protein, surface protein; 1.65A {Trypanosoma congolense}
Probab=41.36 E-value=1e+02 Score=22.50 Aligned_cols=83 Identities=6% Similarity=0.083 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 031859 45 EVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEY 124 (151)
Q Consensus 45 ~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~~~~l~~~~ 124 (151)
.+-..++...+..|..+...- --..++..+-+..|.+.++-...|.+....++...... .+.+......+...|
T Consensus 90 ~~~~~~~~~~d~~Lk~va~~~-----~~~~vr~aA~~Ct~~A~~VTs~SL~~Al~~l~~~~~~~-~~~lr~~~~~~~~~l 163 (184)
T 2y44_A 90 AASKDAIETTDESLRLLATCE-----ADEPIRTAAKKCTGAAAEVTSKSLESAFDALAELLPDG-ADDIREHGAVFVKGL 163 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHTCCSCCSSCCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHhcc-----CcHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHcchh-HHHHHHHHHHHHHHH
Confidence 333345555555555554433 23689999999999999999999999999999884443 555555556666666
Q ss_pred HHHHHHHHH
Q 031859 125 TMLKSKLQT 133 (151)
Q Consensus 125 ~~l~~~L~~ 133 (151)
..+......
T Consensus 164 ~~LE~~~~~ 172 (184)
T 2y44_A 164 KSLEDDVRT 172 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555443
No 30
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=39.02 E-value=60 Score=19.29 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=30.1
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 26 DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (151)
Q Consensus 26 ~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (151)
.+|.++..+- ..+|+++..++...-+++++.+..|.+
T Consensus 11 Pqf~~lR~~v-q~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQII-QQNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHH-HHCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHH-HHCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 5788887766 346999999999999999988887765
No 31
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.59 E-value=43 Score=20.93 Aligned_cols=62 Identities=10% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHhhhhccCchHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 031859 14 FSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHV 79 (151)
Q Consensus 14 ~~~~~~~~~~ld~~f~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~a 79 (151)
....+...+++.+. ....+.. ....+-...++.....-.+.-+..+..++... ++..+....
T Consensus 27 lld~L~~~~vlt~~--~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~L 89 (94)
T 2p1h_A 27 IMDHMISDGFLTIS--EEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAALL 89 (94)
T ss_dssp HHHHHHHHTSSCHH--HHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHCCCCCHH--HHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHHH
Confidence 34445555666643 2222232 23344466666666555566666666666554 454544443
No 32
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=27.04 E-value=1.4e+02 Score=19.81 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhhhccCchHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhh
Q 031859 5 SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKG 84 (151)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ld~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG 84 (151)
+.|+|+..|--.-++.+|+-=++..- .+..+++.|+.-..+....|..+.. -...++ -|-+||
T Consensus 56 selekeiadkvkimfaqgyhievlql-----------ilekildsfisvireqyhdlqaaas----yittvr--dhifkg 118 (146)
T 3zta_A 56 SELEKEIADKVKIMFAQGYHIEVLQL-----------ILEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFKG 118 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHH-----------HHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhcc
Confidence 45677777777777777765544211 2556777777777766666655432 112233 488899
Q ss_pred hhhhh
Q 031859 85 SSSSI 89 (151)
Q Consensus 85 ss~~l 89 (151)
.|-.+
T Consensus 119 tsfll 123 (146)
T 3zta_A 119 TSFLL 123 (146)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88654
No 33
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=25.87 E-value=1.7e+02 Score=21.17 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhHhhhhhhh
Q 031859 43 VVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87 (151)
Q Consensus 43 ~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~ 87 (151)
+.+.+..|.. .+....|..|+..+ |-+.+.+++..||---|
T Consensus 142 l~~~~~~~~~--~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~~~~ 182 (188)
T 3do9_A 142 LEESVFSFRR--ERLLKQIDEALDKQ--DKEAFHRLTAELKMLEG 182 (188)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhc
Confidence 3444444443 34789999999999 99999999998875433
No 34
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=25.64 E-value=49 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHH-HHHHHHHHcCCCCCHHHHHHHhHh
Q 031859 48 SLFFDDAEKL-INSMARALEQPCVDFKQVDSHVHQ 81 (151)
Q Consensus 48 ~~F~~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~ 81 (151)
..|+..+... +..+..|...+ |.+.|+.++..
T Consensus 55 ~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t~ 87 (194)
T 2cw9_A 55 DRFLKQCENDIIPNVLEAMISG--ELDILKDWCYE 87 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcCH
Confidence 6789999998 79999999999 99999988654
No 35
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=25.06 E-value=63 Score=23.90 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=15.7
Q ss_pred hhhcHHHHHHHHHHHHH
Q 031859 87 SSIGALRVKNVCIAFRS 103 (151)
Q Consensus 87 ~~lGa~~L~~~c~~LE~ 103 (151)
+++|+..+.++|..||.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999999987
No 36
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=24.15 E-value=3.1e+02 Score=22.75 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHc------CCCCCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 031859 53 DAEKLINSMARALE------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC 105 (151)
Q Consensus 53 ~~~~~l~~L~~a~~------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~ 105 (151)
.....++.|.+++. .+ ||..+.+..--||.|. +|..+=.++...++..-
T Consensus 479 kV~aKIDNLNQaaSefKnGKng--DFSkVgQAlsdLKnSk--vgLsrnQELtqKIdNLN 533 (569)
T 4dvz_A 479 EWISKVENLNAALNEFKNGKNK--DFSKVTQAKSDLENSV--KDVIINQKVTDKVDNLN 533 (569)
T ss_dssp HHHHHHHHHHHHHHHHHTC-----CTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhcCCCcc--CcchhhhhhhHHHhhh--hhhhhhHHHHHHHHHHH
Confidence 45566777777765 35 9999999988898755 44444447777777643
No 37
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=24.15 E-value=48 Score=18.92 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHhhhhcc
Q 031859 2 DVVSQLQKQFIDFSSSLYREG 22 (151)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (151)
|-+..|+++|.+..-.++.+-
T Consensus 13 d~l~~LEkqF~~LkEqlY~ER 33 (49)
T 2xus_A 13 SEMLDLEKQFSELKEKLFRER 33 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777663
No 38
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=23.90 E-value=1.2e+02 Score=19.67 Aligned_cols=44 Identities=7% Similarity=-0.057 Sum_probs=30.1
Q ss_pred CHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 031859 71 DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCL 117 (151)
Q Consensus 71 D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~~ 117 (151)
....+...+..+|-.+- ..++.+++.++..++..++.+.+....
T Consensus 87 ~~~~i~~y~~~v~~~~~---~r~l~~~~~~i~~~~~~~d~~~~l~~~ 130 (143)
T 2r6a_C 87 SEQELEDYIRHVLNRPK---WLMLKVKEQEKTEAERRKDFLTAARIA 130 (143)
T ss_dssp CHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45567778888776654 467777888888877777766544433
No 39
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=23.89 E-value=85 Score=23.46 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=16.1
Q ss_pred hhhhcHHHHHHHHHHHHHH
Q 031859 86 SSSIGALRVKNVCIAFRSF 104 (151)
Q Consensus 86 s~~lGa~~L~~~c~~LE~a 104 (151)
-+++|+..+.++|..||..
T Consensus 167 eA~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 167 EATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4569999999999999864
No 40
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=23.43 E-value=1.1e+02 Score=22.06 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=29.5
Q ss_pred hHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 25 DDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (151)
Q Consensus 25 d~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (151)
+++|.+++.+- ..+|+++..|+...-+++|+.+..|.+
T Consensus 32 ~Pqf~qlRq~v-qqNPqlL~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 32 VEDLLSLRQVV-SGNPEALAPLLENISARYPQLREHIMA 69 (171)
T ss_dssp HHHHHHHHHHH-HTCGGGHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHHH-HHCHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 36788887765 457999999999888888887777655
No 41
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=23.18 E-value=39 Score=20.86 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=28.0
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 26 DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63 (151)
Q Consensus 26 ~~f~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~ 63 (151)
.+|.+|+.+- ..+|+++..++...-+++++.+..|.+
T Consensus 13 Pqf~qlR~~v-qqNP~lL~~lLqqL~~~NPqL~q~I~~ 49 (72)
T 1pve_A 13 PQFQQMRQII-QQNPSLLPALLQQIGRENPQLLQQISQ 49 (72)
T ss_dssp TTTTTHHHHH-TTCGGGHHHHHHHHHTTCHHHHHHHHT
T ss_pred hHHHHHHHHH-HHCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 4566776655 457999999999988888887776654
No 42
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=22.63 E-value=1.5e+02 Score=18.94 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHh
Q 031859 57 LINSMARALEQPCVDFKQVDSHV 79 (151)
Q Consensus 57 ~l~~L~~a~~~~~~D~~~l~~~a 79 (151)
.+.+|+.++++. ||+.++.-.
T Consensus 68 emdelreaveke--dwenlrdel 88 (114)
T 2p06_A 68 EMDELREAVEKE--DWENLRDEL 88 (114)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHH
Confidence 456788899998 999887654
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.45 E-value=1.4e+02 Score=18.30 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred HhhhhhhhhhcHHHHHHHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 80 HQLKGSSSSIGALRVKNVCIAFRSFC-----DAQNREGCMRCLQQVSHEYTMLKSKLQTL 134 (151)
Q Consensus 80 H~LKGss~~lGa~~L~~~c~~LE~a~-----~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 134 (151)
|.-.|.++.-|...+.++=..|+..- +..-.......+.+....+..++..|.+|
T Consensus 7 ~~~~~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 7 HHHHGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666666655555555554332 11222233344444445555555555544
No 44
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=20.01 E-value=1.6e+02 Score=17.82 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=29.6
Q ss_pred CCHHHHHHHhHhhhhhhhhhcHHHHHHHHHHHHHHHh--hc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031859 70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD--AQ-NREGCMRCLQQVSHEYTMLKSKLQTLFRMEQ 139 (151)
Q Consensus 70 ~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~--~~-~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~ 139 (151)
+||..+...+-.+.+.+..+.. .|.++-..++.... .| ....+...+.+....+.++...|..+-...+
T Consensus 5 v~~~~l~~~a~~~~~~~~~i~~-~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~ 76 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIHS-LLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTIS 76 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777776665432 12222222222110 12 1223444445555555555555554444333
Done!