Query 031861
Match_columns 151
No_of_seqs 135 out of 1097
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3145 Cystine transporter Cy 99.9 1.5E-22 3.2E-27 166.1 5.9 125 2-126 237-362 (372)
2 TIGR00951 2A43 Lysosomal Cysti 99.7 6.3E-16 1.4E-20 123.4 12.1 89 21-120 132-220 (220)
3 KOG3145 Cystine transporter Cy 99.7 1.9E-17 4.1E-22 136.1 0.8 98 27-125 123-229 (372)
4 TIGR00951 2A43 Lysosomal Cysti 99.6 1.9E-15 4.1E-20 120.6 10.4 96 27-123 3-103 (220)
5 KOG2913 Predicted membrane pro 99.6 6.4E-15 1.4E-19 120.2 10.0 92 22-124 3-94 (260)
6 KOG2913 Predicted membrane pro 99.6 2.3E-15 4.9E-20 122.8 4.0 89 26-126 164-252 (260)
7 PF04193 PQ-loop: PQ loop repe 99.6 9.7E-15 2.1E-19 94.0 6.0 56 28-83 2-57 (61)
8 smart00679 CTNS Repeated motif 99.2 1E-11 2.2E-16 70.3 2.5 32 41-72 1-32 (32)
9 COG4095 Uncharacterized conser 98.9 5.5E-09 1.2E-13 72.0 7.7 84 27-122 4-87 (89)
10 PF03083 MtN3_slv: Sugar efflu 98.5 2.4E-07 5.1E-12 63.3 6.3 82 30-123 5-86 (87)
11 KOG3211 Predicted endoplasmic 98.2 5.9E-06 1.3E-10 65.5 7.4 88 27-125 141-228 (230)
12 KOG1623 Multitransmembrane pro 97.3 0.00071 1.5E-08 55.0 6.4 87 26-124 7-94 (243)
13 KOG3211 Predicted endoplasmic 97.2 0.0024 5.3E-08 50.8 8.4 83 27-120 30-112 (230)
14 PHA02246 hypothetical protein 96.3 0.022 4.8E-07 43.7 7.3 47 34-80 115-161 (192)
15 KOG2489 Transmembrane protein 95.2 0.23 4.9E-06 44.4 9.9 55 10-66 450-507 (592)
16 KOG1623 Multitransmembrane pro 95.0 0.15 3.2E-06 41.6 7.9 73 28-104 125-200 (243)
17 PF00810 ER_lumen_recept: ER l 93.9 0.52 1.1E-05 35.5 8.2 64 11-76 78-141 (147)
18 PF08611 DUF1774: Fungal prote 89.4 3 6.6E-05 29.4 7.3 32 36-67 6-37 (97)
19 KOG3106 ER lumen protein retai 80.4 4.4 9.5E-05 32.2 5.1 54 27-80 115-168 (212)
20 PF07578 LAB_N: Lipid A Biosyn 72.5 9.2 0.0002 25.5 4.3 46 31-77 1-46 (72)
21 PHA02246 hypothetical protein 72.1 44 0.00095 25.9 8.9 48 27-74 4-53 (192)
22 KOG0828 Predicted E3 ubiquitin 66.4 58 0.0012 29.7 9.1 43 23-65 444-488 (636)
23 PHA02706 hypothetical protein; 64.6 2.7 5.8E-05 26.2 0.4 42 96-143 13-54 (58)
24 PHA00726 hypothetical protein 63.3 13 0.00028 25.7 3.6 26 101-127 9-34 (89)
25 PF10746 Phage_holin_6: Phage 60.3 29 0.00062 22.8 4.7 41 16-56 25-65 (66)
26 PF04971 Lysis_S: Lysis protei 56.0 32 0.00069 22.7 4.4 40 18-58 27-67 (68)
27 COG5196 ERD2 ER lumen protein 55.3 1E+02 0.0022 24.3 8.5 53 27-79 116-168 (214)
28 PTZ00370 STEVOR; Provisional 53.4 22 0.00047 29.9 4.0 29 101-129 261-289 (296)
29 TIGR00892 2A0113 monocarboxyla 52.9 1.2E+02 0.0025 26.0 8.7 32 118-149 424-455 (455)
30 PF02487 CLN3: CLN3 protein; 52.5 1.6E+02 0.0035 25.7 10.3 48 27-75 117-164 (402)
31 COG0833 LysP Amino acid transp 49.4 2.1E+02 0.0046 26.2 10.0 96 23-121 399-501 (541)
32 PF07077 DUF1345: Protein of u 44.8 1.4E+02 0.0031 23.0 9.8 11 44-54 33-43 (180)
33 KOG3106 ER lumen protein retai 44.4 62 0.0014 25.8 5.1 24 44-67 17-40 (212)
34 PF07672 MFS_Mycoplasma: Mycop 43.4 1.1E+02 0.0024 25.4 6.7 33 42-77 226-258 (267)
35 PRK09697 protein secretion pro 36.2 30 0.00064 25.3 2.0 10 112-122 76-85 (139)
36 PF04148 Erv26: Transmembrane 31.4 1.5E+02 0.0032 23.7 5.5 54 56-116 62-115 (211)
37 PRK15087 hemolysin; Provisiona 31.1 2.6E+02 0.0057 22.0 10.5 68 4-84 116-188 (219)
38 TIGR01478 STEVOR variant surfa 30.4 52 0.0011 27.6 2.9 29 101-129 265-293 (295)
39 COG4736 CcoQ Cbb3-type cytochr 30.1 79 0.0017 20.3 3.1 26 100-125 11-36 (60)
40 PRK15049 L-asparagine permease 29.9 3.9E+02 0.0084 23.5 11.2 28 22-49 376-403 (499)
41 PF15048 OSTbeta: Organic solu 29.1 1.2E+02 0.0026 22.4 4.3 25 92-116 34-58 (125)
42 PRK14780 lipoprotein signal pe 28.9 1.3E+02 0.0029 24.9 5.0 33 92-124 199-231 (263)
43 PF07857 DUF1632: CEO family ( 26.3 2.8E+02 0.006 22.7 6.4 23 105-127 230-252 (254)
44 COG5102 SFT2 Membrane protein 25.6 1.7E+02 0.0036 23.0 4.7 16 59-74 158-173 (201)
45 PF15069 FAM163: FAM163 family 25.3 1.6E+02 0.0036 22.2 4.5 7 134-140 48-54 (143)
46 KOG2766 Predicted membrane pro 25.0 3.1E+02 0.0066 23.2 6.4 17 28-44 195-211 (336)
47 PF11368 DUF3169: Protein of u 24.7 69 0.0015 25.6 2.6 13 62-74 14-26 (248)
48 TIGR02736 cbb3_Q_epsi cytochro 22.9 1.8E+02 0.0039 18.4 3.7 21 106-126 10-30 (56)
49 PRK01021 lpxB lipid-A-disaccha 22.2 2.7E+02 0.0059 25.9 6.1 63 27-94 9-71 (608)
50 TIGR01065 hlyIII channel prote 20.5 4.1E+02 0.0088 20.5 7.2 35 42-84 140-174 (204)
51 PF11145 DUF2921: Protein of u 20.4 3.2E+02 0.007 26.7 6.5 88 24-115 799-899 (909)
52 PF06809 NPDC1: Neural prolife 20.3 45 0.00097 28.5 0.7 14 113-127 262-275 (341)
No 1
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.87 E-value=1.5e-22 Score=166.06 Aligned_cols=125 Identities=54% Similarity=0.891 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhh
Q 031861 2 AIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV 80 (151)
Q Consensus 2 ~~~~~v~~~~~~~~~~~~~~~-~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~ 80 (151)
|++.++|+.+++..++++..+ .|.+..+.+.+++...+.++|+||.++||+||||+|+|+..++++++|+++.+++.++
T Consensus 237 gil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMil 316 (372)
T KOG3145|consen 237 GILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMIL 316 (372)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHH
Confidence 567788888888888877665 5899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 031861 81 QSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVI 126 (151)
Q Consensus 81 ~~~~~~~~~~i~~n~~~l~~s~~~v~~d~iil~Q~~~~Y~~~~~~~ 126 (151)
+..+.++|..+.+|+.+..++++++++|.+++.|||++|++++.-+
T Consensus 317 Q~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~~~~~~~ 362 (372)
T KOG3145|consen 317 QSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYPRGHVLK 362 (372)
T ss_pred HHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEeccccccC
Confidence 9999999999999999999999999999999999998888887654
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.68 E-value=6.3e-16 Score=123.37 Aligned_cols=89 Identities=37% Similarity=0.512 Sum_probs=77.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHH
Q 031861 21 NHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLL 100 (151)
Q Consensus 21 ~~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~ 100 (151)
...|.+..+.++.++.....+|++||+++|||||||+|+|+...+++++|.+-. +++.... .+|+.++..
T Consensus 132 ~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqr----i~ts~~~------~gd~~~l~~ 201 (220)
T TIGR00951 132 PITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQR----IFQSVNE------TGDPLKAGL 201 (220)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHH----HHHHHHH------cCCHHHHHH
Confidence 457899999999999999999999999999999999999999999999995554 4433321 267899999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 031861 101 SLVSVVFDLLFICQHYVLYP 120 (151)
Q Consensus 101 s~~~v~~d~iil~Q~~~~Y~ 120 (151)
+..++++|.+++.||| +|+
T Consensus 202 ~~~s~~~n~i~~~Q~~-~y~ 220 (220)
T TIGR00951 202 FVVSSLFNGLFAAQVF-FYW 220 (220)
T ss_pred HHHHHHHHHHHHHHHh-hcC
Confidence 9999999999999997 774
No 3
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.65 E-value=1.9e-17 Score=136.15 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhh---hccCCc--c----ccccchhH
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS---IDQNSW--V----NFYGNIGK 97 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~---~~~~~~--~----~i~~n~~~ 97 (151)
..+++||++.+.|++|++||++.||||||+.|+|.+|+++|++|...|.+..+..- ..+++. . ..+.+..+
T Consensus 123 l~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nD 202 (372)
T KOG3145|consen 123 LDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLND 202 (372)
T ss_pred HHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhh
Confidence 68899999999999999999999999999999999999999999999998765422 223332 1 12333557
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 031861 98 TLLSLVSVVFDLLFICQHYVLYPAKKAV 125 (151)
Q Consensus 98 l~~s~~~v~~d~iil~Q~~~~Y~~~~~~ 125 (151)
++.++|+++++++.+.|++ .|+|..++
T Consensus 203 v~fslHa~lmt~Iti~Qc~-~yeR~~q~ 229 (372)
T KOG3145|consen 203 VVFSLHAVLMTVITILQCF-FYERGWQR 229 (372)
T ss_pred hhhhHHHHHHHHHHHHHHH-hhhhcccc
Confidence 9999999999999999995 88877543
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.63 E-value=1.9e-15 Score=120.62 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhh---hccCCcccc--ccchhHHHHH
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS---IDQNSWVNF--YGNIGKTLLS 101 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~---~~~~~~~~i--~~n~~~l~~s 101 (151)
++.++||++.++|+++++||++|||||||++|+|++|+.++++|..++.++.+..- ..+++.+.- .....+++.+
T Consensus 3 iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~a 82 (220)
T TIGR00951 3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFT 82 (220)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHH
Confidence 46789999999999999999999999999999999999999999999998765431 122222211 1223589999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCc
Q 031861 102 LVSVVFDLLFICQHYVLYPAKK 123 (151)
Q Consensus 102 ~~~v~~d~iil~Q~~~~Y~~~~ 123 (151)
+++++++++++.|+. +|+++.
T Consensus 83 i~~~il~~l~~~q~~-~~~~~~ 103 (220)
T TIGR00951 83 LHAILICFIVLHQCG-DYERGW 103 (220)
T ss_pred HHHHHHHHHHHHHHh-hccccc
Confidence 999999999999985 776553
No 5
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=6.4e-15 Score=120.17 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=80.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHH
Q 031861 22 HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLS 101 (151)
Q Consensus 22 ~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s 101 (151)
..|.....++|.++.+||.+..+||+++|||+||++|+|+.|+..|+.|+++.+++..+... ++...+.+
T Consensus 3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~----------~~~~~~~~ 72 (260)
T KOG2913|consen 3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL----------GSTLKVQA 72 (260)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc----------chhHHHHH
Confidence 45778899999999999999999999999999999999999999999999999988777443 34566778
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcc
Q 031861 102 LVSVVFDLLFICQHYVLYPAKKA 124 (151)
Q Consensus 102 ~~~v~~d~iil~Q~~~~Y~~~~~ 124 (151)
...++.|.+++.|++ ||++..+
T Consensus 73 ~yy~~~d~~l~~q~~-yy~~~~~ 94 (260)
T KOG2913|consen 73 VYYTLADSVLFVQCL-YYGNIYP 94 (260)
T ss_pred HHHHHHHHHHHHHHH-hcchhcc
Confidence 889999999999984 7877655
No 6
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.56 E-value=2.3e-15 Score=122.80 Aligned_cols=89 Identities=27% Similarity=0.312 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHH
Q 031861 26 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSV 105 (151)
Q Consensus 26 ~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v 105 (151)
..+.++||++..++..+|+|||++|+|||||+|+|+.++.++..||.+|..| +.+..|.||+..+..+.
T Consensus 164 ~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s-----------~~~~~n~~w~~~~~~~~ 232 (260)
T KOG2913|consen 164 SLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS-----------SYLVTNLPWLVDSKGTI 232 (260)
T ss_pred chHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc-----------cccccCCcccccCCcch
Confidence 3788999999999999999999999999999999999999999999999776 23467899999999999
Q ss_pred HHHHHHHHHHHhhcCCCcccc
Q 031861 106 VFDLLFICQHYVLYPAKKAVI 126 (151)
Q Consensus 106 ~~d~iil~Q~~~~Y~~~~~~~ 126 (151)
.+|+.++.|++ +||+++++.
T Consensus 233 ~~D~~~~~q~~-~~~~~~~~~ 252 (260)
T KOG2913|consen 233 YLDIFIFLQFF-NYRASKAQD 252 (260)
T ss_pred hHHHHHHHHHH-Hhhcccccc
Confidence 99999999986 788777443
No 7
>PF04193 PQ-loop: PQ loop repeat
Probab=99.55 E-value=9.7e-15 Score=93.98 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhh
Q 031861 28 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI 83 (151)
Q Consensus 28 ~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~ 83 (151)
++++|+++.++++++++||+++|||+||++|+|+.++.++++|+++++++.+....
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~ 57 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY 57 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999887776543
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=99.20 E-value=1e-11 Score=70.30 Aligned_cols=32 Identities=50% Similarity=0.748 Sum_probs=29.9
Q ss_pred hhhhhHHHHHhhhCcccccchHHHHHHhhhhh
Q 031861 41 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC 72 (151)
Q Consensus 41 ~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i 72 (151)
++++||+++|||+||++|+|+.|+++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 47899999999999999999999999999974
No 9
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.5e-09 Score=72.02 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHH
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV 106 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~ 106 (151)
..+++|++++.+..++++||.+|-+|.|+|+++|+.|+.+-..|-.+|++ ++....+.+.+..| .++..
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwli----ygILi~~lPii~aN-------~i~~i 72 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLI----YGILINDLPIIIAN-------IISFI 72 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH----HHHHHccCcchhHH-------HHHHH
Confidence 45789999999999999999999999999999999999999999999965 44433333444444 66777
Q ss_pred HHHHHHHHHHhhcCCC
Q 031861 107 FDLLFICQHYVLYPAK 122 (151)
Q Consensus 107 ~d~iil~Q~~~~Y~~~ 122 (151)
+.++++.-. +.|+.|
T Consensus 73 l~liIl~~k-I~~~~k 87 (89)
T COG4095 73 LSLIILFYK-IKYILK 87 (89)
T ss_pred HHHHHHHHH-HHHHHh
Confidence 777777765 356544
No 10
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.55 E-value=2.4e-07 Score=63.34 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHHHHH
Q 031861 30 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDL 109 (151)
Q Consensus 30 ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~~d~ 109 (151)
++|.+..++-..+-+||+.+.+|+||++++|+..+...++++.+| +.++...+|+..+..|. ..+++..
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W----~~YG~l~~d~~i~~~N~-------~g~~~~~ 73 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLW----LIYGILINDWPIIVPNV-------FGLVLSI 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHh----hhhhhhcCCeeEEeeHH-------HHHHHHH
Confidence 345566666677779999999999999999999999999999999 45666666777777774 3455555
Q ss_pred HHHHHHHhhcCCCc
Q 031861 110 LFICQHYVLYPAKK 123 (151)
Q Consensus 110 iil~Q~~~~Y~~~~ 123 (151)
+.+.-++ .|.+++
T Consensus 74 ~~~~~~~-~y~~~~ 86 (87)
T PF03083_consen 74 IYLVVYY-IYPSKK 86 (87)
T ss_pred HHHhheE-EeCCCC
Confidence 5555554 566654
No 11
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.20 E-value=5.9e-06 Score=65.50 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHH
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV 106 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~ 106 (151)
+....-.....+..++|+||+..|||.|+|..+|....++++.|...+.+..+-. ..| +..+....+..+
T Consensus 141 ~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~---t~d-------~~mll~~v~s~~ 210 (230)
T KOG3211|consen 141 IITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE---TGD-------FLMLLRFVISLA 210 (230)
T ss_pred HHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh---cCC-------hhhHHHHHHHHH
Confidence 3344444455567789999999999999999999999999999999986543221 112 233555677889
Q ss_pred HHHHHHHHHHhhcCCCccc
Q 031861 107 FDLLFICQHYVLYPAKKAV 125 (151)
Q Consensus 107 ~d~iil~Q~~~~Y~~~~~~ 125 (151)
+|..+..|.. .||+.+++
T Consensus 211 ~Ng~i~aq~l-~Y~s~~~~ 228 (230)
T KOG3211|consen 211 LNGLITAQVL-RYWSTAIK 228 (230)
T ss_pred HhHHHHHHHH-HHHhcCCC
Confidence 9999999985 89888764
No 12
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=97.29 E-value=0.00071 Score=55.00 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccC-CccccccchhHHHHHHHH
Q 031861 26 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN-SWVNFYGNIGKTLLSLVS 104 (151)
Q Consensus 26 ~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~-~~~~i~~n~~~l~~s~~~ 104 (151)
.+..+.|.+....-..+-+|-.++-+||||+||.|...+++.+++..+|+ .++.... |...+..|. +.
T Consensus 7 ~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl----~YG~~~~~d~llitIN~-------~G 75 (243)
T KOG1623|consen 7 FLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWL----YYGLLKVHDYLLITING-------IG 75 (243)
T ss_pred HHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHH----HhhhhccCceEEEEEeh-------hc
Confidence 34444555555555677789999999999999999999999999999994 4553332 666666673 33
Q ss_pred HHHHHHHHHHHHhhcCCCcc
Q 031861 105 VVFDLLFICQHYVLYPAKKA 124 (151)
Q Consensus 105 v~~d~iil~Q~~~~Y~~~~~ 124 (151)
+++..+-+.=+ ++|.++|.
T Consensus 76 ~~ie~~Yi~~f-~~ya~~k~ 94 (243)
T KOG1623|consen 76 LVIETVYISIF-LYYAPKKK 94 (243)
T ss_pred HHHHHHHHHHH-heecCchh
Confidence 44444444444 37776664
No 13
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.22 E-value=0.0024 Score=50.84 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHH
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV 106 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~ 106 (151)
+...+||.-...+..-.+|||.|--..||++|+|..-+++.++|..-.+.+..-+++.- + ...-+.+-++
T Consensus 30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF---s-------s~gE~~fLl~ 99 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF---S-------SYGEYPFLLL 99 (230)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc---h-------hHHHHHHHHH
Confidence 68889999999999999999999999999999999999999999888765444433211 1 1111223445
Q ss_pred HHHHHHHHHHhhcC
Q 031861 107 FDLLFICQHYVLYP 120 (151)
Q Consensus 107 ~d~iil~Q~~~~Y~ 120 (151)
-+.+++.+.+ .|+
T Consensus 100 Q~vili~~if-~f~ 112 (230)
T KOG3211|consen 100 QAVILILCIF-HFS 112 (230)
T ss_pred HHHHHHHHHH-Hhc
Confidence 5667777775 776
No 14
>PHA02246 hypothetical protein
Probab=96.32 E-value=0.022 Score=43.65 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhh
Q 031861 34 IQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV 80 (151)
Q Consensus 34 i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~ 80 (151)
++...-..+++|||+.=||.|+.||.|+.+.++--+|-.+-..+..+
T Consensus 115 Vat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L 161 (192)
T PHA02246 115 VATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL 161 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence 44455567899999999999999999999999988887766555444
No 15
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=95.15 E-value=0.23 Score=44.44 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHh---hhhhHHHHHhhhCcccccchHHHHH
Q 031861 10 AAAVCFFVALPNHSWLWLINFFNAIQVIMTLI---KYIPQAIMNFRRKSTDGFSIGNILL 66 (151)
Q Consensus 10 ~~~~~~~~~~~~~~w~~~~~ilG~i~~~~~~~---s~iPQI~~N~krKSt~GlS~~f~~l 66 (151)
++++-..+--.+-+| .+.++-..+...+++ -..||...|||-||+.-|.-.++.-
T Consensus 450 g~aVYSLlY~~hKsW--YSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 450 GGAVYSLLYVEHKSW--YSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred HHHHHhhhhcccccH--HHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 333333333334454 333444444444444 4589999999999999999887764
No 16
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=95.03 E-value=0.15 Score=41.61 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhh---hhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHH
Q 031861 28 INFFNAIQVIMTLIKY---IPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVS 104 (151)
Q Consensus 28 ~~ilG~i~~~~~~~s~---iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~ 104 (151)
...+|+++.+.....+ +--+.+--|+||+|.++...-+..++-...| ++++...+|.-....|..-.++++.+
T Consensus 125 ~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W----~lYGlli~D~~IaipN~iG~~l~~~Q 200 (243)
T KOG1623|consen 125 VSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQW----LLYGLLIKDFFIAIPNVLGFLLGLIQ 200 (243)
T ss_pred eeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHH----HHHHHHhcCeEEEcccHHHHHHHHHH
Confidence 4567888887776655 5556678888999999998866555555544 44554444443334564334444333
No 17
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=93.90 E-value=0.52 Score=35.53 Aligned_cols=64 Identities=8% Similarity=0.128 Sum_probs=48.0
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhh
Q 031861 11 AAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYS 76 (151)
Q Consensus 11 ~~~~~~~~~~~~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i 76 (151)
.+++.+... .++| +..+++=..+..+.+++.+||.++-.|++.+|.+...++..-.+.-.++.+
T Consensus 78 ~vLa~i~~p-~~~~-~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~ 141 (147)
T PF00810_consen 78 FVLALIFHP-LNSF-FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL 141 (147)
T ss_pred HHHHHHHhc-cccc-hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence 334444443 2222 466777778999999999999999999999999999998877666666543
No 18
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=89.42 E-value=3 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=20.6
Q ss_pred HHHHHhhhhhHHHHHhhhCcccccchHHHHHH
Q 031861 36 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD 67 (151)
Q Consensus 36 ~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~ 67 (151)
.++|.+..+|+...--.+--+-|+|...+...
T Consensus 6 VfIW~~l~~g~~~i~~~~D~~~GfslS~L~~s 37 (97)
T PF08611_consen 6 VFIWVILVYGGFFILAFKDYAMGFSLSYLTAS 37 (97)
T ss_pred hHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHH
Confidence 45677777777766665556667766665554
No 19
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.40 E-value=4.4 Score=32.21 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhh
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV 80 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~ 80 (151)
+.+++=-.+..+.+++-+||..+--|.|.+|-+--+.++.--+--.+|....+.
T Consensus 115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~ 168 (212)
T KOG3106|consen 115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIY 168 (212)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 567777789999999999999999999999999988887765555555544444
No 20
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=72.49 E-value=9.2 Score=25.54 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhh
Q 031861 31 FNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ 77 (151)
Q Consensus 31 lG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ 77 (151)
+|.++-.+.+.-++=|-+.-=|+|... ++..|-.+.++|+++.+++
T Consensus 1 iG~~gq~lF~~Rf~~QW~~SEk~k~sv-~P~~FW~lSl~Gs~lll~Y 46 (72)
T PF07578_consen 1 IGFIGQLLFSSRFIVQWIYSEKAKKSV-VPVAFWYLSLIGSLLLLIY 46 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHH
Confidence 477788888888999999888888664 8999999999999987543
No 21
>PHA02246 hypothetical protein
Probab=72.09 E-value=44 Score=25.88 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHH--Hhhhhhhh
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL--DFLGGCTN 74 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l--~~~G~i~~ 74 (151)
+.-.+...++.+-.+.++||.---.|.|+++|.|-.|-.+ ..+|..++
T Consensus 4 ~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSfy 53 (192)
T PHA02246 4 LSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISFY 53 (192)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4455677888888999999999999999999999877555 34454444
No 22
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.39 E-value=58 Score=29.67 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=27.2
Q ss_pred chHH-HHHHHHHHHHHHHHhhhhhHHHHHhhhC-cccccchHHHH
Q 031861 23 SWLW-LINFFNAIQVIMTLIKYIPQAIMNFRRK-STDGFSIGNIL 65 (151)
Q Consensus 23 ~w~~-~~~ilG~i~~~~~~~s~iPQI~~N~krK-St~GlS~~f~~ 65 (151)
.|.- .-..+-.+-.+++-.-.+|||+.|-+|+ |-.-+...+++
T Consensus 444 ~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIl 488 (636)
T KOG0828|consen 444 FWPVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYIL 488 (636)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhh
Confidence 4553 4455555666666667899999999996 44334444443
No 23
>PHA02706 hypothetical protein; Provisional
Probab=64.61 E-value=2.7 Score=26.19 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCCCCCCCCCCCCC
Q 031861 96 GKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 143 (151)
Q Consensus 96 ~~l~~s~~~v~~d~iil~Q~~~~Y~~~~~~~~~~~~~~~~~~pll~~~ 143 (151)
....+++.+++.|.++++-.| +-+++..+. ..||.||||...
T Consensus 13 immllgi~siiidtvifinay--fvkkr~~~~----k~~e~~pll~kt 54 (58)
T PHA02706 13 IMMLLGIASIIIDTVIFINAY--FVKKRKCIN----KKDEIEPLLDKT 54 (58)
T ss_pred HHHHHhhHHHhhheeeeeehh--hhhhhhhcc----cccccchhhhhh
Confidence 345567778888999988864 444433322 247889998643
No 24
>PHA00726 hypothetical protein
Probab=63.34 E-value=13 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccc
Q 031861 101 SLVSVVFDLLFICQHYVLYPAKKAVIS 127 (151)
Q Consensus 101 s~~~v~~d~iil~Q~~~~Y~~~~~~~~ 127 (151)
+-+.+.+|.+++.-. .++|+.|+++.
T Consensus 9 aei~l~fD~i~l~~s-LLFRKpK~k~~ 34 (89)
T PHA00726 9 AEIVLVFDTIMLTTA-LLFRKPKPKKV 34 (89)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCCCchh
Confidence 456789999999997 59999988763
No 25
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=60.33 E-value=29 Score=22.80 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=33.7
Q ss_pred HhhccccchHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcc
Q 031861 16 FVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 56 (151)
Q Consensus 16 ~~~~~~~~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt 56 (151)
.-.+....|.++..+...+++++-+...++--++-||||.-
T Consensus 25 a~~f~GLslneWfyiati~YtvlQig~~v~k~v~~~kr~~k 65 (66)
T PF10746_consen 25 ARYFWGLSLNEWFYIATIAYTVLQIGYLVWKKVRDWKRKNK 65 (66)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334567778888899999999999999999999999864
No 26
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.00 E-value=32 Score=22.73 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=26.1
Q ss_pred hccccchHHHHHHHHHHHHHHHHh-hhhhHHHHHhhhCcccc
Q 031861 18 ALPNHSWLWLINFFNAIQVIMTLI-KYIPQAIMNFRRKSTDG 58 (151)
Q Consensus 18 ~~~~~~w~~~~~ilG~i~~~~~~~-s~iPQI~~N~krKSt~G 58 (151)
..+..+|..++-+.|.+-.++..+ -.+=| ++--|||+.+|
T Consensus 27 ~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK-~k~drr~~a~g 67 (68)
T PF04971_consen 27 QFSPSQWAAIGVIGGIFFGLLTYLTNLYFK-IKEDRRKAARG 67 (68)
T ss_pred ccCcccchhHHHHHHHHHHHHHHHhHhhhh-hhHhhhHhhcC
Confidence 345678999988888876666555 34444 45567776665
No 27
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=55.35 E-value=1e+02 Score=24.27 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhh
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMI 79 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll 79 (151)
+.+++=-.+..+.+++.+||.++--|...|+.+....++...+=-..|....+
T Consensus 116 isnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI 168 (214)
T COG5196 116 ISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWI 168 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHH
Confidence 67777778889999999999999999999999999888776554445544333
No 28
>PTZ00370 STEVOR; Provisional
Probab=53.37 E-value=22 Score=29.92 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccc
Q 031861 101 SLVSVVFDLLFICQHYVLYPAKKAVISSK 129 (151)
Q Consensus 101 s~~~v~~d~iil~Q~~~~Y~~~~~~~~~~ 129 (151)
+++-+++..++++-+..+|||||+-..|+
T Consensus 261 alvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 33333444444444333799888776665
No 29
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=52.85 E-value=1.2e+02 Score=26.00 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=13.4
Q ss_pred hcCCCcccccccCCCCCCCCCCCCCCCCCCCC
Q 031861 118 LYPAKKAVISSKLSKDGGVEPLLKSSDHPESE 149 (151)
Q Consensus 118 ~Y~~~~~~~~~~~~~~~~~~pll~~~~~~~~~ 149 (151)
.||..++++......|..|+..=.+.|.+|+|
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (455)
T TIGR00892 424 NYRLLAKEQKAALEREGARDKKDAEGDSRESE 455 (455)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccccCC
Confidence 56555544432221233333333344555544
No 30
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=52.49 E-value=1.6e+02 Score=25.74 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhh
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY 75 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~ 75 (151)
++-++..++...-=+.++.+ -.-|.+.+..|+|.++=.--++|...|.
T Consensus 117 ~Gv~las~ssg~GE~tfL~l-t~~y~~~~l~~wssGTG~aGl~Ga~~y~ 164 (402)
T PF02487_consen 117 LGVVLASLSSGLGEVTFLSL-THFYGKSSLSAWSSGTGGAGLVGALYYL 164 (402)
T ss_pred HHHHHHhhhhhhhHHHHHHH-HHhcCccccccccCCcChhhHHHHHHHH
Confidence 34444444444444455554 5567778899999999888888888885
No 31
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=49.41 E-value=2.1e+02 Score=26.19 Aligned_cols=96 Identities=14% Similarity=0.009 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHh--hh--Cccccc---chHHHHHHhhhhhhhhhhhhhhhhccCCccccccch
Q 031861 23 SWLWLINFFNAIQVIMTLIKYIPQAIMNF--RR--KSTDGF---SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNI 95 (151)
Q Consensus 23 ~w~~~~~ilG~i~~~~~~~s~iPQI~~N~--kr--KSt~Gl---S~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~ 95 (151)
.+.|+.++.|....+.|..--+-|+.--. |. ++.+.+ |+.+......|.++..+-++.+.+..-+ + ...+.
T Consensus 399 vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~-p-~~~~~ 476 (541)
T COG0833 399 VFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFF-P-IGFSA 476 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheee-c-CCccH
Confidence 68889999999999999988877775332 22 233333 3345556666666655544443332100 0 01122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCC
Q 031861 96 GKTLLSLVSVVFDLLFICQHYVLYPA 121 (151)
Q Consensus 96 ~~l~~s~~~v~~d~iil~Q~~~~Y~~ 121 (151)
..++.+-+.+-+-+++..=|. +|+|
T Consensus 477 ~~F~~~Yl~~pi~i~~y~~yk-~~~k 501 (541)
T COG0833 477 GDFFAAYLGLPIFIAIYIGYK-LYKK 501 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHhe-eEec
Confidence 334444455555555555543 4554
No 32
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=44.82 E-value=1.4e+02 Score=22.97 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=5.0
Q ss_pred hhHHHHHhhhC
Q 031861 44 IPQAIMNFRRK 54 (151)
Q Consensus 44 iPQI~~N~krK 54 (151)
=|+-.+-+.++
T Consensus 33 ~~~~~r~~a~~ 43 (180)
T PF07077_consen 33 DPERTRRRARR 43 (180)
T ss_pred CHHHHHHHHHh
Confidence 34555444444
No 33
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=62 Score=25.81 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=18.7
Q ss_pred hhHHHHHhhhCcccccchHHHHHH
Q 031861 44 IPQAIMNFRRKSTDGFSIGNILLD 67 (151)
Q Consensus 44 iPQI~~N~krKSt~GlS~~f~~l~ 67 (151)
+==+.|-||.||++|+|...=.+-
T Consensus 17 ~vLi~Ki~ktrsCaGiSlKSQ~L~ 40 (212)
T KOG3106|consen 17 IVLILKIWKTKSCAGISLKSQELF 40 (212)
T ss_pred HHHHHHHHhcCccccccchHHHHH
Confidence 334789999999999999765443
No 34
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=43.37 E-value=1.1e+02 Score=25.36 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=18.4
Q ss_pred hhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhh
Q 031861 42 KYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ 77 (151)
Q Consensus 42 s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ 77 (151)
..+||-+|+++.|.+ ...|=++|-.|-+++.+.
T Consensus 226 L~lPhEyK~~~pk~i---g~~Fg~iWGfGY~~yTi~ 258 (267)
T PF07672_consen 226 LNLPHEYKGYNPKKI---GIQFGLIWGFGYIFYTIY 258 (267)
T ss_pred hcChhhhcCCCccee---hhHHHHHHHHHHHHHHHH
Confidence 446666666655433 355555666666666543
No 35
>PRK09697 protein secretion protein GspB; Provisional
Probab=36.17 E-value=30 Score=25.30 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=5.5
Q ss_pred HHHHHhhcCCC
Q 031861 112 ICQHYVLYPAK 122 (151)
Q Consensus 112 l~Q~~~~Y~~~ 122 (151)
-.||| .+.++
T Consensus 76 s~qH~-~FKKq 85 (139)
T PRK09697 76 STQHY-FFKKQ 85 (139)
T ss_pred hhhhe-eeecC
Confidence 35775 55444
No 36
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=31.44 E-value=1.5e+02 Score=23.75 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=40.1
Q ss_pred ccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 031861 56 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 116 (151)
Q Consensus 56 t~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n~~~l~~s~~~v~~d~iil~Q~~ 116 (151)
+||+++...++.+..+..|.- +-++++.+.-..|..+++.+.++.|=.+..+|+
T Consensus 62 ~D~~P~~~~l~si~s~~~Y~~-------~L~~fP~i~ltsp~Fi~S~~lvi~nH~lwf~~F 115 (211)
T PF04148_consen 62 FDGFPFWLTLFSIFSHLVYLR-------NLRTFPFISLTSPSFILSCVLVILNHFLWFRHF 115 (211)
T ss_pred cCCCCHHHHHHHHHHHHHHHH-------HhCCCCeeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777776666666532 224567776677889999999999999999975
No 37
>PRK15087 hemolysin; Provisional
Probab=31.15 E-value=2.6e+02 Score=22.00 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHh-hccccchHHH----HHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhh
Q 031861 4 VSVVWLAAAVCFFV-ALPNHSWLWL----INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQM 78 (151)
Q Consensus 4 ~~~v~~~~~~~~~~-~~~~~~w~~~----~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~l 78 (151)
...+|..++++... ......|.++ .-.+||...+ .+|+.+.+. +..-+.+-+.|+++|.++.
T Consensus 116 ~~~iW~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~-----~~~~l~~~~--------~~~~l~~l~~GG~~Y~~G~ 182 (219)
T PRK15087 116 MIVIWSLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLI-----VIYQLAIKL--------AIGGVTLLAVGGVVYSLGV 182 (219)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-----HHHHHHHhC--------CHHHHHHHHHHhHHHHhhH
Confidence 44566555544322 2223444442 3334555544 666666553 4445566678999999998
Q ss_pred hhhhhc
Q 031861 79 IVQSID 84 (151)
Q Consensus 79 l~~~~~ 84 (151)
+++..+
T Consensus 183 ~fY~~~ 188 (219)
T PRK15087 183 IFYVCK 188 (219)
T ss_pred HHHccC
Confidence 887754
No 38
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.45 E-value=52 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccc
Q 031861 101 SLVSVVFDLLFICQHYVLYPAKKAVISSK 129 (151)
Q Consensus 101 s~~~v~~d~iil~Q~~~~Y~~~~~~~~~~ 129 (151)
+++-+++..++++-+..+|||||+-..|+
T Consensus 265 alvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33333444444444333799888766554
No 39
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=79 Score=20.31 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccc
Q 031861 100 LSLVSVVFDLLFICQHYVLYPAKKAV 125 (151)
Q Consensus 100 ~s~~~v~~d~iil~Q~~~~Y~~~~~~ 125 (151)
-+..++.+-++++.=.|..||++++.
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Confidence 34455555555555555578877654
No 40
>PRK15049 L-asparagine permease; Provisional
Probab=29.95 E-value=3.9e+02 Score=23.53 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q 031861 22 HSWLWLINFFNAIQVIMTLIKYIPQAIM 49 (151)
Q Consensus 22 ~~w~~~~~ilG~i~~~~~~~s~iPQI~~ 49 (151)
..+.++.++.+....+.|.+..+-++..
T Consensus 376 ~~f~~l~~~~~~~~li~y~~~~~~~l~~ 403 (499)
T PRK15049 376 RVFEIVLNFASLGIIASWAFIIVCQMRL 403 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667777666666655
No 41
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.08 E-value=1.2e+02 Score=22.37 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q 031861 92 YGNIGKTLLSLVSVVFDLLFICQHY 116 (151)
Q Consensus 92 ~~n~~~l~~s~~~v~~d~iil~Q~~ 116 (151)
.+|...++++.+++++-++++.+-.
T Consensus 34 pWNysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 34 PWNYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4677789999999999999999963
No 42
>PRK14780 lipoprotein signal peptidase; Provisional
Probab=28.89 E-value=1.3e+02 Score=24.88 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=20.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 031861 92 YGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 124 (151)
Q Consensus 92 ~~n~~~l~~s~~~v~~d~iil~Q~~~~Y~~~~~ 124 (151)
..|..+.....+.+++-+..+.+++.-|+++++
T Consensus 199 iFNlADi~I~~G~~llv~~~li~~~~~~~~~~~ 231 (263)
T PRK14780 199 IINLFDVYIVVGVCVLVVILIISFIIKWKKDKD 231 (263)
T ss_pred eeEHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 457777666666666666677775434554443
No 43
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=26.26 E-value=2.8e+02 Score=22.73 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhcCCCccccc
Q 031861 105 VVFDLLFICQHYVLYPAKKAVIS 127 (151)
Q Consensus 105 v~~d~iil~Q~~~~Y~~~~~~~~ 127 (151)
+++..+++.=.|+.|+|+||+-+
T Consensus 230 IfltSt~~F~~Y~~~~rn~P~v~ 252 (254)
T PF07857_consen 230 IFLTSTVYFVIYCIIKRNKPKVY 252 (254)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCC
Confidence 33344444445678999988653
No 44
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=25.63 E-value=1.7e+02 Score=22.97 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=6.4
Q ss_pred cchHHHHHHhhhhhhh
Q 031861 59 FSIGNILLDFLGGCTN 74 (151)
Q Consensus 59 lS~~f~~l~~~G~i~~ 74 (151)
+++.+-++-++..+.|
T Consensus 158 L~i~f~~l~vvsfi~y 173 (201)
T COG5102 158 LNIAFCFLQVVSFIMY 173 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 45
>PF15069 FAM163: FAM163 family
Probab=25.26 E-value=1.6e+02 Score=22.15 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 031861 134 GGVEPLL 140 (151)
Q Consensus 134 ~~~~pll 140 (151)
.|+||-+
T Consensus 48 ~eee~d~ 54 (143)
T PF15069_consen 48 EEEEPDF 54 (143)
T ss_pred cccCCCC
Confidence 3455554
No 46
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=24.95 E-value=3.1e+02 Score=23.22 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 031861 28 INFFNAIQVIMTLIKYI 44 (151)
Q Consensus 28 ~~ilG~i~~~~~~~s~i 44 (151)
.+++|.+..+-..+|-+
T Consensus 195 ~elm~~lgLfGaIIsaI 211 (336)
T KOG2766|consen 195 VELMGFLGLFGAIISAI 211 (336)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 47
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.74 E-value=69 Score=25.63 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=6.2
Q ss_pred HHHHHHhhhhhhh
Q 031861 62 GNILLDFLGGCTN 74 (151)
Q Consensus 62 ~f~~l~~~G~i~~ 74 (151)
.+++..++|++.-
T Consensus 14 ~illg~~iGg~~G 26 (248)
T PF11368_consen 14 LILLGGLIGGFIG 26 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555544
No 48
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=22.88 E-value=1.8e+02 Score=18.44 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhcCCCcccc
Q 031861 106 VFDLLFICQHYVLYPAKKAVI 126 (151)
Q Consensus 106 ~~d~iil~Q~~~~Y~~~~~~~ 126 (151)
++-+++..=.|-+||+++...
T Consensus 10 ~lvv~LYgY~yhLYrsek~G~ 30 (56)
T TIGR02736 10 LLVIFLYAYIYHLYRSQKKGE 30 (56)
T ss_pred HHHHHHHHHHHHhhhhhcccc
Confidence 333333333333688776654
No 49
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.20 E-value=2.7e+02 Score=25.86 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhccCCccccccc
Q 031861 27 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 94 (151)
Q Consensus 27 ~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~~~~~~~i~~n 94 (151)
+...+|+++-.+.+.-++=|-+..=|+|... ++..|-.++++|+++. +.++..+.|.+.+.+.
T Consensus 9 ~~~~~G~~~q~~F~~rf~~QW~~sek~~~s~-~p~~FW~~Sl~g~~~l----~~y~~~~~~~~~~~~q 71 (608)
T PRK01021 9 WLYPLGLFANLFFGSAFCIQWFLSKKRKYSY-VPKIFWILSSIGAVLM----ICHGFIQSQFPIALLH 71 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-CchHHHHHHHHHHHHH----HHHHHHhcCCcEEEec
No 50
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=20.46 E-value=4.1e+02 Score=20.51 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=22.7
Q ss_pred hhhhHHHHHhhhCcccccchHHHHHHhhhhhhhhhhhhhhhhc
Q 031861 42 KYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID 84 (151)
Q Consensus 42 s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~~i~ll~~~~~ 84 (151)
..+|+++++ ++...+..-+.|+++|.++.+++...
T Consensus 140 ~~~~~~~~~--------~~~~~~~~l~~gg~~Y~~G~~fY~~~ 174 (204)
T TIGR01065 140 LVIKPLYHN--------LPGAGFSLLAAGGLLYTVGAIFYALK 174 (204)
T ss_pred HHHHHHHHh--------CCHHHHHHHHHHhHHHHcchHheeec
Confidence 356776533 23344555667889999988887754
No 51
>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function.
Probab=20.38 E-value=3.2e+02 Score=26.66 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHhhhC-cccccchHHHHHHhhhhhhhhhhhhhhhhcc----CCccccccc----
Q 031861 24 WLWLINFFNAIQVIMTLIKYIPQAIMNFRRK-STDGFSIGNILLDFLGGCTNYSQMIVQSIDQ----NSWVNFYGN---- 94 (151)
Q Consensus 24 w~~~~~ilG~i~~~~~~~s~iPQI~~N~krK-St~GlS~~f~~l~~~G~i~~~i~ll~~~~~~----~~~~~i~~n---- 94 (151)
|.++-...|.+. =.-.+|||+.|--.+ .++-||..|++-..+==++..++-++-.... ++.++..+|
T Consensus 799 ~~~l~~y~GLv~----D~FLLPQii~N~~~~~~~~~Ls~~fY~G~T~~Rllph~Yd~~r~~~~~~~~~~~~~~ya~~~~d 874 (909)
T PF11145_consen 799 WEDLKSYAGLVL----DGFLLPQIIGNAFWQSKVKPLSKSFYVGTTLVRLLPHVYDLYRAPNYVPYFDDESYVYANPRMD 874 (909)
T ss_pred HHHHHHhhhHHH----hhhhHHHHHHHHHhccCCcccccceeehHHHHHHHHHHHhhccccccCcccccccccccCcccc
Confidence 555555555443 345799999986555 4567888776543222222222212111100 012222222
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHH
Q 031861 95 ----IGKTLLSLVSVVFDLLFICQH 115 (151)
Q Consensus 95 ----~~~l~~s~~~v~~d~iil~Q~ 115 (151)
.-+++.-.+++++-.+++.|.
T Consensus 875 fys~awDi~Ip~~a~llA~~v~~QQ 899 (909)
T PF11145_consen 875 FYSTAWDIVIPCGAVLLAALVYLQQ 899 (909)
T ss_pred ccccccceeeehHHHHHHHHHHHHh
Confidence 223556677888888899995
No 52
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=20.28 E-value=45 Score=28.52 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=10.0
Q ss_pred HHHHhhcCCCccccc
Q 031861 113 CQHYVLYPAKKAVIS 127 (151)
Q Consensus 113 ~Q~~~~Y~~~~~~~~ 127 (151)
.|.| -|.+.|.+..
T Consensus 262 AQMY-HYQHQKQQMi 275 (341)
T PF06809_consen 262 AQMY-HYQHQKQQMI 275 (341)
T ss_pred HHHH-HHHHHHHHHH
Confidence 6776 7888877664
Done!