Query 031861
Match_columns 151
No_of_seqs 135 out of 1097
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_G FXYD10, phospholemman-l 50.4 8.6 0.0003 24.8 2.0 10 137-146 63-72 (74)
2 3gia_A Uncharacterized protein 49.1 1E+02 0.0034 24.6 10.0 27 23-49 339-365 (444)
3 2jp3_A FXYD domain-containing 40.7 8.7 0.0003 24.4 0.8 46 97-146 21-66 (67)
4 4djk_A Probable glutamate/gamm 37.3 1.7E+02 0.0057 23.8 13.6 16 64-79 413-428 (511)
5 3l1l_A Arginine/agmatine antip 31.4 1.9E+02 0.0067 22.8 10.2 50 23-74 349-398 (445)
6 2knc_A Integrin alpha-IIB; tra 30.3 91 0.0031 18.7 4.7 19 105-124 26-44 (54)
7 1zza_A Stannin, AG8_1; helix, 27.3 1.3E+02 0.0044 19.4 6.0 25 99-123 18-42 (90)
8 2l2t_A Receptor tyrosine-prote 16.7 1.7E+02 0.0057 16.7 3.8 28 95-122 9-37 (44)
9 3ug9_A Archaeal-type opsin 1, 13.6 5.2E+02 0.018 20.9 8.4 42 106-147 281-323 (333)
10 2ks1_B Epidermal growth factor 12.5 1.1E+02 0.0039 17.4 1.8 6 118-123 34-39 (44)
No 1
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=50.43 E-value=8.6 Score=24.83 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 031861 137 EPLLKSSDHP 146 (151)
Q Consensus 137 ~pll~~~~~~ 146 (151)
||||++.+..
T Consensus 63 ~~litpg~a~ 72 (74)
T 2zxe_G 63 QHLLQPGEAT 72 (74)
T ss_dssp ----------
T ss_pred ccccccCccC
Confidence 7999987654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=49.07 E-value=1e+02 Score=24.64 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHH
Q 031861 23 SWLWLINFFNAIQVIMTLIKYIPQAIM 49 (151)
Q Consensus 23 ~w~~~~~ilG~i~~~~~~~s~iPQI~~ 49 (151)
++..+..+.+......|....+..+..
T Consensus 339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (444)
T 3gia_A 339 NMEGVASITSAVFMVIYLFVILSHYIL 365 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555565555554443
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.71 E-value=8.7 Score=24.36 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCCCCCCCCCCCCCCCC
Q 031861 97 KTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 146 (151)
Q Consensus 97 ~l~~s~~~v~~d~iil~Q~~~~Y~~~~~~~~~~~~~~~~~~pll~~~~~~ 146 (151)
-++++.+-+++-++++.-.-| +.+.+++.+. ..++.+|||++.+..
T Consensus 21 GLifA~vLfi~GI~iilS~kc--rCk~~qk~~~--~~~~a~~litpg~a~ 66 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALALSGKC--KCRRNHTPSS--LPEKVTPLITPGSAS 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTHH--HHHHTCCTTT--STTTSHHHHSCCCSC
T ss_pred chhhHHHHHHHHHHHHHcCcc--cccCCCCCCC--CCccCCceecCCcCC
Confidence 344554444544444443222 2222222222 234568899977643
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=37.30 E-value=1.7e+02 Score=23.81 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=8.7
Q ss_pred HHHHhhhhhhhhhhhh
Q 031861 64 ILLDFLGGCTNYSQMI 79 (151)
Q Consensus 64 ~~l~~~G~i~~~i~ll 79 (151)
...+.+|.+......+
T Consensus 413 ~~~~~~~~~~~~~~~~ 428 (511)
T 4djk_A 413 LVVAIVGLLTSIMAFI 428 (511)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666665554433
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.37 E-value=1.9e+02 Score=22.83 Aligned_cols=50 Identities=2% Similarity=-0.100 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHhhhCcccccchHHHHHHhhhhhhh
Q 031861 23 SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTN 74 (151)
Q Consensus 23 ~w~~~~~ilG~i~~~~~~~s~iPQI~~N~krKSt~GlS~~f~~l~~~G~i~~ 74 (151)
.+.++....+......|...-+-.+...+|++ .... +....+..+|.++.
T Consensus 349 ~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r~-~~~~~~~~~~~~~~ 398 (445)
T 3l1l_A 349 EFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKAR-PAYLAVTTIAFLYC 398 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGGC-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cccc-chhHHHHHHHHHHH
Confidence 34455555555554555554444444433332 1111 23344555555544
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.27 E-value=91 Score=18.68 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhcCCCcc
Q 031861 105 VVFDLLFICQHYVLYPAKKA 124 (151)
Q Consensus 105 v~~d~iil~Q~~~~Y~~~~~ 124 (151)
+.+-..+++.+= .++++++
T Consensus 26 L~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 26 LTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHH-HTTTTCC
T ss_pred HHHHHHHHHHcC-cccCCCC
Confidence 333344555543 4555543
No 7
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=27.30 E-value=1.3e+02 Score=19.41 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Q 031861 99 LLSLVSVVFDLLFICQHYVLYPAKK 123 (151)
Q Consensus 99 ~~s~~~v~~d~iil~Q~~~~Y~~~~ 123 (151)
+.-++++..-..++.-+|||-|-++
T Consensus 18 ~viliavaalg~li~gcwcylrlqr 42 (90)
T 1zza_A 18 IVILIAIAALGALILGCWCYLRLQR 42 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666777655443
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.65 E-value=1.7e+02 Score=16.72 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=10.6
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHhhcCCC
Q 031861 95 IGKTLLSLVS-VVFDLLFICQHYVLYPAK 122 (151)
Q Consensus 95 ~~~l~~s~~~-v~~d~iil~Q~~~~Y~~~ 122 (151)
.+.++.+++. ++.-.++..-.+++.|++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 3444444333 333333333333233443
No 9
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=13.64 E-value=5.2e+02 Score=20.91 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhcCCCcc-cccccCCCCCCCCCCCCCCCCCC
Q 031861 106 VFDLLFICQHYVLYPAKKA-VISSKLSKDGGVEPLLKSSDHPE 147 (151)
Q Consensus 106 ~~d~iil~Q~~~~Y~~~~~-~~~~~~~~~~~~~pll~~~~~~~ 147 (151)
..-.+-..+|.++|++-++ +|.+-...|-|-|-+..++++|.
T Consensus 281 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (333)
T 3ug9_A 281 HYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDEAEAG 323 (333)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEC------CEEEEEESCC----
T ss_pred HHHHHHhhhheeeeccceeeeEEEecCeeeehhhhhcccccCC
Confidence 4445566778767876533 33332223445566666665543
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.51 E-value=1.1e+02 Score=17.41 Aligned_cols=6 Identities=0% Similarity=0.202 Sum_probs=2.3
Q ss_pred hcCCCc
Q 031861 118 LYPAKK 123 (151)
Q Consensus 118 ~Y~~~~ 123 (151)
+.|+++
T Consensus 34 ~~RRr~ 39 (44)
T 2ks1_B 34 FMRRRH 39 (44)
T ss_dssp HHHTTT
T ss_pred HhhhhH
Confidence 334433
Done!