BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031863
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XO8|A Chain A, Solution Structure Of At1g01470 From Arabidopsis Thaliana
          Length = 151

 Score =  207 bits (527), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 121/151 (80%)

Query: 1   MAQFLDKAKNFVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEI 60
           MA  LDKAK+FVA+K+  I KPE  +TDVDLK+V+R++VEY AKVSV NPYSHS+PICEI
Sbjct: 1   MASLLDKAKDFVADKLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI 60

Query: 61  SYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDIDYEVEL 120
           S+TF SAG+ I  G + DPGSLK  D T L +P+ VP +IL +LA+D+G DWDIDYE+++
Sbjct: 61  SFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYELQI 120

Query: 121 GLTIDLPIIGNFTIPLSKKGEFKLPSLSDIF 151
           GLTIDLP++G FTIP+S KGE KLP+  D F
Sbjct: 121 GLTIDLPVVGEFTIPISSKGEIKLPTFKDFF 151


>pdb|1YYC|A Chain A, Solution Structure Of A Putative Late Embryogenesis
           Abundant (Lea) Protein At2g46140.1
          Length = 174

 Score =  192 bits (489), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 116/151 (76%)

Query: 1   MAQFLDKAKNFVAEKMANIEKPEAEITDVDLKNVSREAVEYDAKVSVDNPYSHSLPICEI 60
           ++  LDKAK F AEK+ANI  PEA + DVD K V+R+ V+Y AKVSV NPYS S+PIC+I
Sbjct: 24  ISSLLDKAKGFFAEKLANIPTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYSQSIPICQI 83

Query: 61  SYTFKSAGKVIASGTMADPGSLKGNDKTLLQVPMKVPPNILVSLAKDIGADWDIDYEVEL 120
           SY  KSA + IASGT+ DPGSL G+  T+L VP+KV  +I VSL KD+  DWDIDY++++
Sbjct: 84  SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYSIAVSLMKDMCTDWDIDYQLDI 143

Query: 121 GLTIDLPIIGNFTIPLSKKGEFKLPSLSDIF 151
           GLT D+P++G+ TIP+S +GE KLPSL D F
Sbjct: 144 GLTFDIPVVGDITIPVSTQGEIKLPSLRDFF 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.134    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,554,530
Number of Sequences: 62578
Number of extensions: 182606
Number of successful extensions: 315
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 5
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)